Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0383130 | XP_003603477.1 | 97.727 | 308 | 6 | 1 | 1 | 308 | 1 | 307 | 0.0 | 591 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0383130 | G7JBR2 | 97.727 | 308 | 6 | 1 | 1 | 308 | 1 | 307 | 0.0 | 591 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0033880 | Msa0383130 | 0.818556 | 1.842729e-52 | -8.615850e-47 |
| Msa0070250 | Msa0383130 | 0.800023 | 1.750171e-48 | -8.615850e-47 |
| Msa0126840 | Msa0383130 | 0.826284 | 2.951244e-54 | -8.615850e-47 |
| Msa0127040 | Msa0383130 | 0.830929 | 2.226089e-55 | -8.615850e-47 |
| Msa0127850 | Msa0383130 | 0.812661 | 3.789655e-51 | -8.615850e-47 |
| Msa0142110 | Msa0383130 | 0.822438 | 2.368825e-53 | -8.615850e-47 |
| Msa0171850 | Msa0383130 | 0.800214 | 1.601066e-48 | -8.615850e-47 |
| Msa0171940 | Msa0383130 | 0.801751 | 7.765459e-49 | -8.615850e-47 |
| Msa0174000 | Msa0383130 | 0.833899 | 4.090738e-56 | -8.615850e-47 |
| Msa0221600 | Msa0383130 | 0.802514 | 5.411295e-49 | -8.615850e-47 |
| Msa0383130 | Msa0383160 | 0.827240 | 1.744798e-54 | -8.615850e-47 |
| Msa0383130 | Msa0436200 | 0.881019 | 3.397319e-70 | -8.615850e-47 |
| Msa0383130 | Msa0474700 | 0.822412 | 2.402575e-53 | -8.615850e-47 |
| Msa0383130 | Msa0478580 | 0.803322 | 3.683969e-49 | -8.615850e-47 |
| Msa0383130 | Msa0524590 | 0.847417 | 1.172026e-59 | -8.615850e-47 |
| Msa0383130 | Msa0599900 | 0.800313 | 1.528131e-48 | -8.615850e-47 |
| Msa0383130 | Msa0610090 | 0.824226 | 9.052914e-54 | -8.615850e-47 |
| Msa0383130 | Msa0656810 | 0.825462 | 4.626703e-54 | -8.615850e-47 |
| Msa0383130 | Msa0658480 | 0.833683 | 4.631238e-56 | -8.615850e-47 |
| Msa0383130 | Msa0714920 | 0.802609 | 5.172481e-49 | -8.615850e-47 |
| Msa0383130 | Msa0744100 | 0.803064 | 4.166774e-49 | -8.615850e-47 |
| Msa0383130 | Msa0825270 | 0.823206 | 1.568990e-53 | -8.615850e-47 |
| Msa0383130 | Msa0826510 | 0.825097 | 5.644977e-54 | -8.615850e-47 |
| Msa0383130 | Msa0865620 | 0.818951 | 1.499538e-52 | -8.615850e-47 |
| Msa0383130 | Msa0879850 | 0.830823 | 2.363129e-55 | -8.615850e-47 |
| Msa0383130 | Msa0981430 | 0.822501 | 2.290343e-53 | -8.615850e-47 |
| Msa0383130 | Msa1068390 | 0.813876 | 2.049826e-51 | -8.615850e-47 |
| Msa0383130 | Msa1083880 | 0.813174 | 2.924720e-51 | -8.615850e-47 |
| Msa0383130 | Msa1201830 | 0.812775 | 3.577496e-51 | -8.615850e-47 |
| Msa0383130 | Msa1333970 | 0.800562 | 1.359441e-48 | -8.615850e-47 |
| Msa0383130 | Msa1459910 | 0.823454 | 1.372950e-53 | -8.615850e-47 |
| Msa0248460 | Msa0383130 | 0.806409 | 8.342985e-50 | -8.615850e-47 |
| Msa0262480 | Msa0383130 | 0.808552 | 2.927654e-50 | -8.615850e-47 |
| Msa0300350 | Msa0383130 | 0.823312 | 1.482228e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0383130 | MtrunA17_Chr3g0138531 | 97.727 | 308 | 6 | 1 | 1 | 308 | 1 | 307 | 0.0 | 591 |
| Msa0383130 | MtrunA17_Chr3g0138541 | 87.421 | 318 | 28 | 3 | 1 | 308 | 1 | 316 | 1.55e-99 | 295 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0383130 | AT2G25670.2 | 60.308 | 325 | 105 | 9 | 1 | 308 | 1 | 318 | 2.34e-43 | 151 |
| Msa0383130 | AT2G25670.1 | 60.308 | 325 | 105 | 9 | 1 | 308 | 1 | 318 | 2.34e-43 | 151 |
| Msa0383130 | AT4G32610.1 | 55.077 | 325 | 119 | 11 | 1 | 308 | 1 | 315 | 4.04e-33 | 124 |
Find 98 sgRNAs with CRISPR-Local
Find 176 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTCTTCTTCTTGGCATTCT+TGG | 0.196635 | 3_1:+85913470 | None:intergenic |
| AATCGGAATCGCAGGCGTTT+TGG | 0.237603 | 3_1:-85915163 | Msa0383130:CDS |
| CGATTCCGATTTGGTTGATT+TGG | 0.262411 | 3_1:+85915181 | None:intergenic |
| TTCTTCTTGACCTCAGGTTC+AGG | 0.291395 | 3_1:+85914051 | None:intergenic |
| CAAGGACAAGAAGAATAATA+AGG | 0.295710 | 3_1:-85915210 | Msa0383130:CDS |
| TATGGCGGATTAATTAGTTT+TGG | 0.335384 | 3_1:-85912934 | Msa0383130:three_prime_UTR |
| AGCAGCGTCCATTTCTTTAC+TGG | 0.341268 | 3_1:+85913305 | None:intergenic |
| GGAGATTGAGATCTGGGATT+GGG | 0.342740 | 3_1:+85915547 | None:intergenic |
| GCTAAAGCCAACTGTTTATT+CGG | 0.361954 | 3_1:+85913122 | None:intergenic |
| AAACAGTTGGCTTTAGCTCT+TGG | 0.363128 | 3_1:-85913116 | Msa0383130:three_prime_UTR |
| CTGCGATTCCGATTCCGATT+TGG | 0.363251 | 3_1:+85915172 | None:intergenic |
| GTGCTGTGTTGCTACTTATA+TGG | 0.365344 | 3_1:-85912883 | Msa0383130:three_prime_UTR |
| TTTGTGTACTGGGGTTGTTT+TGG | 0.368329 | 3_1:-85912960 | Msa0383130:three_prime_UTR |
| CAGGATAAGAAAGGTGTAGA+TGG | 0.373922 | 3_1:-85913531 | Msa0383130:CDS |
| TCGGCCTCCTTTGGTGCAGC+TGG | 0.386362 | 3_1:+85914018 | None:intergenic |
| AGTTGACGTTCGGCCTCCTT+TGG | 0.387948 | 3_1:+85914009 | None:intergenic |
| CGAACGTCAACTCTCCAAAA+AGG | 0.392328 | 3_1:-85913998 | Msa0383130:CDS |
| ATGCTCGGGTTTGTCCTCAC+TGG | 0.394418 | 3_1:+85915040 | None:intergenic |
| GGTTTGTCCTCACTGGGTTG+AGG | 0.405114 | 3_1:+85915047 | None:intergenic |
| TTATATAAATAAATAAATAA+AGG | 0.412888 | 3_1:+85915526 | None:intergenic |
| TGAAGGTGACGAGGAGGTAG+AGG | 0.413213 | 3_1:-85914115 | Msa0383130:CDS |
| AATAAAGGAGATTGAGATCT+GGG | 0.416008 | 3_1:+85915541 | None:intergenic |
| GAGATTGAGATCTGGGATTG+GGG | 0.417325 | 3_1:+85915548 | None:intergenic |
| GTTTGTCCTCACTGGGTTGA+GGG | 0.417417 | 3_1:+85915048 | None:intergenic |
| TGTTCTCTTCCCAGCTAGCT+AGG | 0.423496 | 3_1:+85915665 | None:intergenic |
| TGCTAGAGCTGCTGCTCAAG+AGG | 0.430832 | 3_1:-85913283 | Msa0383130:CDS |
| GTGATATAACCCTAGCTAGC+TGG | 0.431730 | 3_1:-85915675 | Msa0383130:five_prime_UTR |
| TCAGCATTCTTCTTGACCTC+AGG | 0.431890 | 3_1:+85914045 | None:intergenic |
| TCAGGTTTCACAGTGTGCTC+TGG | 0.433555 | 3_1:+85914069 | None:intergenic |
| AAATACCTTGGGATTCATCT+TGG | 0.436144 | 3_1:+85913890 | None:intergenic |
| GCTCTCCTTTACATCAATAC+AGG | 0.436244 | 3_1:-85913174 | Msa0383130:three_prime_UTR |
| GCACAGGTTGTTGGTTGTAA+TGG | 0.445016 | 3_1:+85913211 | None:intergenic |
| AAATAAAGGAGATTGAGATC+TGG | 0.459992 | 3_1:+85915540 | None:intergenic |
| TGCTCGGGTTTGTCCTCACT+GGG | 0.461528 | 3_1:+85915041 | None:intergenic |
| CAAATCAACCAAATCGGAAT+CGG | 0.464697 | 3_1:-85915180 | Msa0383130:CDS |
| TGTATTTGCAGGTGCACCTC+AGG | 0.467621 | 3_1:-85913550 | Msa0383130:intron |
| GTTAGACTCTTTCACCTCCT+TGG | 0.471040 | 3_1:+85913431 | None:intergenic |
| TTGAATCGCGTTGTTAAGAA+TGG | 0.471740 | 3_1:-85915330 | Msa0383130:exon |
| TTCTTCCAAATCAACCAAAT+CGG | 0.473799 | 3_1:-85915186 | Msa0383130:CDS |
| GGTGTAGATGGGGATGTAGA+TGG | 0.477288 | 3_1:-85913519 | Msa0383130:CDS |
| AGGAGATTGAGATCTGGGAT+TGG | 0.478847 | 3_1:+85915546 | None:intergenic |
| AGACAATATCTCAAGTCCAT+TGG | 0.492455 | 3_1:+85913073 | None:intergenic |
| TTAAGAAAGTTGCTTCTATG+AGG | 0.492845 | 3_1:-85913338 | Msa0383130:CDS |
| AAATTCCTGTATTGATGTAA+AGG | 0.499279 | 3_1:+85913169 | None:intergenic |
| AAGGACAAGAAGAATAATAA+GGG | 0.503226 | 3_1:-85915209 | Msa0383130:CDS |
| GTTCTCTTCCCAGCTAGCTA+GGG | 0.507395 | 3_1:+85915666 | None:intergenic |
| CACCGTTGAATGCAACCTCA+TGG | 0.509050 | 3_1:-85915133 | Msa0383130:CDS |
| GGGAAATCGAGATTAGGGTT+TGG | 0.509305 | 3_1:+85915570 | None:intergenic |
| CTGCTCAAGAGGCTGCTGCA+AGG | 0.511826 | 3_1:-85913272 | Msa0383130:CDS |
| TGATATAACCCTAGCTAGCT+GGG | 0.512292 | 3_1:-85915674 | Msa0383130:five_prime_UTR |
| TGAACAAACCTCAAAATGCT+CGG | 0.523575 | 3_1:+85915025 | None:intergenic |
| GAGGTTGCATTCAACGGTGC+CGG | 0.524888 | 3_1:+85915137 | None:intergenic |
| TGGTGGAAGCAGAAGAGATG+AGG | 0.527011 | 3_1:-85915303 | Msa0383130:CDS |
| AAAGAAGGATAAAGCTTCCA+AGG | 0.528000 | 3_1:-85913448 | Msa0383130:CDS |
| GTCCTCACTGGGTTGAGGGT+CGG | 0.528008 | 3_1:+85915052 | None:intergenic |
| AGGATAAGAAAGGTGTAGAT+GGG | 0.528793 | 3_1:-85913530 | Msa0383130:CDS |
| CAAATCGGAATCGGAATCGC+AGG | 0.529120 | 3_1:-85915171 | Msa0383130:CDS |
| GCCCATGAGGTTGCATTCAA+CGG | 0.535338 | 3_1:+85915131 | None:intergenic |
| TATTACTAGTCGTATTCCAA+TGG | 0.542649 | 3_1:-85913089 | Msa0383130:three_prime_UTR |
| GAACAAACCTCAAAATGCTC+GGG | 0.543027 | 3_1:+85915026 | None:intergenic |
| AGGCTGCTGCAAGGAACGCA+AGG | 0.544412 | 3_1:-85913263 | Msa0383130:CDS |
| TGCAACCTCATGGGCTGATG+TGG | 0.545900 | 3_1:-85915123 | Msa0383130:CDS |
| ACACAGAATGAAAGCAATGA+TGG | 0.546801 | 3_1:-85913919 | Msa0383130:CDS |
| GAAGGAACTTGAAGAGCTTG+AGG | 0.550464 | 3_1:-85913965 | Msa0383130:CDS |
| ACCGTTGAATGCAACCTCAT+GGG | 0.552821 | 3_1:-85915132 | Msa0383130:CDS |
| CAGAAGAGATGAGGGTTCGT+TGG | 0.554071 | 3_1:-85915294 | Msa0383130:CDS |
| GGAAAATTGAGGCGGTGCGG+TGG | 0.568741 | 3_1:+85915073 | None:intergenic |
| TTGTTAAGAATGGTTGGTGG+TGG | 0.570771 | 3_1:-85915320 | Msa0383130:exon |
| TCTACACCTTTCTTATCCTG+AGG | 0.571217 | 3_1:+85913534 | None:intergenic |
| TGAAGTTCCAGCTGCACCAA+AGG | 0.576041 | 3_1:-85914025 | Msa0383130:CDS |
| AGATTGAGATCTGGGATTGG+GGG | 0.576281 | 3_1:+85915549 | None:intergenic |
| GGTTGAGGGTCGGAAAATTG+AGG | 0.576339 | 3_1:+85915062 | None:intergenic |
| ATCGCGTTGTTAAGAATGGT+TGG | 0.586496 | 3_1:-85915326 | Msa0383130:exon |
| CACTGTGAAACCTGAACCTG+AGG | 0.592278 | 3_1:-85914061 | Msa0383130:CDS |
| GGTGCACCTCAGGATAAGAA+AGG | 0.599338 | 3_1:-85913540 | Msa0383130:CDS |
| AGTTCCAGCTGCACCAAAGG+AGG | 0.599579 | 3_1:-85914022 | Msa0383130:CDS |
| GATGATGCCGAATAAACAGT+TGG | 0.602592 | 3_1:-85913129 | Msa0383130:three_prime_UTR |
| TGATGTTGAAAATGCAGAGG+AGG | 0.604568 | 3_1:-85913391 | Msa0383130:CDS |
| GGATAAGAAAGGTGTAGATG+GGG | 0.604616 | 3_1:-85913529 | Msa0383130:CDS |
| TATTGATGTAAAGGAGAGCA+AGG | 0.606781 | 3_1:+85913178 | None:intergenic |
| TCTTTCACATCAACAACAGA+TGG | 0.611699 | 3_1:+85913366 | None:intergenic |
| AATGAAAGCAATGATGGTCA+AGG | 0.616215 | 3_1:-85913913 | Msa0383130:CDS |
| GATTGAGATCTGGGATTGGG+GGG | 0.625693 | 3_1:+85915550 | None:intergenic |
| GGTGGAAGCAGAAGAGATGA+GGG | 0.627510 | 3_1:-85915302 | Msa0383130:CDS |
| TTTAGATGAAGGTGACGAGG+AGG | 0.634428 | 3_1:-85914121 | Msa0383130:CDS |
| GTCGGAAAATTGAGGCGGTG+CGG | 0.637381 | 3_1:+85915070 | None:intergenic |
| TTCTGATGTTGAAAATGCAG+AGG | 0.645244 | 3_1:-85913394 | Msa0383130:CDS |
| GTCATCCACATCAGCCCATG+AGG | 0.661130 | 3_1:+85915118 | None:intergenic |
| GAAGAAGAAGAAATCGGACA+AGG | 0.668190 | 3_1:-85915228 | Msa0383130:CDS |
| TTCCGACCCTCAACCCAGTG+AGG | 0.672447 | 3_1:-85915054 | Msa0383130:CDS |
| GCTAGGGTTATATCACAAGA+CGG | 0.673709 | 3_1:+85915682 | None:intergenic |
| CAAGGCCAAGATGAATCCCA+AGG | 0.675177 | 3_1:-85913895 | Msa0383130:intron |
| GCGTTGTTAAGAATGGTTGG+TGG | 0.676274 | 3_1:-85915323 | Msa0383130:exon |
| TCGGCATCATCATATGAACA+AGG | 0.678182 | 3_1:+85913141 | None:intergenic |
| AAGGAGGTGAAAGAGTCTAA+CGG | 0.681195 | 3_1:-85913429 | Msa0383130:CDS |
| ATTACAACCAACAACCTGTG+CGG | 0.714310 | 3_1:-85913209 | Msa0383130:CDS |
| TGAGGGTCGGAAAATTGAGG+CGG | 0.719908 | 3_1:+85915065 | None:intergenic |
| GAAGGATAAAGCTTCCAAGG+AGG | 0.726948 | 3_1:-85913445 | Msa0383130:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATATAAATAAATAAATAA+AGG | + | chr3_1:85913001-85913020 | None:intergenic | 0.0% |
| !! | AAAAACAGTTAAAAATAAAT+TGG | + | chr3_1:85915693-85915712 | None:intergenic | 10.0% |
| !!! | AATTTATTTTTAACTGTTTT+TGG | - | chr3_1:85915692-85915711 | Msa0383130:five_prime_UTR | 10.0% |
| !! | ATGAAAAAAATTATAAATGC+TGG | + | chr3_1:85914875-85914894 | None:intergenic | 15.0% |
| !!! | ATATTGTCTTAAAACTTTTT+TGG | - | chr3_1:85915465-85915484 | Msa0383130:five_prime_UTR | 15.0% |
| !! | CAATAACAAAAAAAAAATCC+AGG | + | chr3_1:85913571-85913590 | None:intergenic | 20.0% |
| !!! | ACATTTTGAAGATTTATCTT+AGG | + | chr3_1:85914007-85914026 | None:intergenic | 20.0% |
| !!! | AATAAATAGGTTTTGTTACA+TGG | - | chr3_1:85914145-85914164 | Msa0383130:CDS | 20.0% |
| !!! | ATAAATAGGTTTTGTTACAT+GGG | - | chr3_1:85914146-85914165 | Msa0383130:CDS | 20.0% |
| !! | AGTTTATCATTACTATTCAA+AGG | + | chr3_1:85914219-85914238 | None:intergenic | 20.0% |
| !! | TGAATAGTAATGATAAACTT+TGG | - | chr3_1:85914220-85914239 | Msa0383130:intron | 20.0% |
| !! | TTACATTATTTGTAGGATTA+TGG | - | chr3_1:85914675-85914694 | Msa0383130:intron | 20.0% |
| ! | TTTGAAGAAGAAGAAGAAAT+CGG | - | chr3_1:85913290-85913309 | Msa0383130:CDS | 25.0% |
| ! | AAGGACAAGAAGAATAATAA+GGG | - | chr3_1:85913315-85913334 | Msa0383130:CDS | 25.0% |
| !!! | ATGTCATTTTTCTGTTTGTT+TGG | - | chr3_1:85913626-85913645 | Msa0383130:intron | 25.0% |
| !! | TTGATGACTATTGAGATTAA+GGG | - | chr3_1:85913721-85913740 | Msa0383130:intron | 25.0% |
| !! | ATGAACACAAGTTGAAAATA+AGG | - | chr3_1:85913922-85913941 | Msa0383130:CDS | 25.0% |
| !! | ACAAGTTGAAAATAAGGTAT+AGG | - | chr3_1:85913928-85913947 | Msa0383130:CDS | 25.0% |
| !! | TAAGTATTTGAAGAGCTTTT+CGG | + | chr3_1:85913970-85913989 | None:intergenic | 25.0% |
| ! | TATCTTAGGATAAAACATGT+TGG | + | chr3_1:85913993-85914012 | None:intergenic | 25.0% |
| ! | ACACAATTATCAAAAAGATC+AGG | + | chr3_1:85914093-85914112 | None:intergenic | 25.0% |
| !! | TTGATAATTGTGTTTCTTTG+AGG | - | chr3_1:85914100-85914119 | Msa0383130:CDS | 25.0% |
| ! | TGTCTATGCGATAAATAAAT+AGG | - | chr3_1:85914132-85914151 | Msa0383130:CDS | 25.0% |
| ! | AAATTGCAAAGTAGAAAATC+TGG | + | chr3_1:85914353-85914372 | None:intergenic | 25.0% |
| !! | TCTACTTTGCAATTTTTAAC+AGG | - | chr3_1:85914358-85914377 | Msa0383130:intron | 25.0% |
| !!! | GAAGAAGATATTTTAGATGA+AGG | - | chr3_1:85914392-85914411 | Msa0383130:intron | 25.0% |
| ! | CTCTGAATAATAAATACCTT+GGG | + | chr3_1:85914648-85914667 | None:intergenic | 25.0% |
| !!! | TGGTTTATTTTTTTGAGTTC+AGG | - | chr3_1:85914695-85914714 | Msa0383130:intron | 25.0% |
| ! | GAAAAAATCCAGTAAAGAAA+TGG | - | chr3_1:85915211-85915230 | Msa0383130:CDS | 25.0% |
| !! | AAATTCCTGTATTGATGTAA+AGG | + | chr3_1:85915358-85915377 | None:intergenic | 25.0% |
| AAATGTAAGAAAAGAGTGAG+AGG | + | chr3_1:85912931-85912950 | None:intergenic | 30.0% | |
| AATAAAGGAGATTGAGATCT+GGG | + | chr3_1:85912986-85913005 | None:intergenic | 30.0% | |
| AAATAAAGGAGATTGAGATC+TGG | + | chr3_1:85912987-85913006 | None:intergenic | 30.0% | |
| CAAGGACAAGAAGAATAATA+AGG | - | chr3_1:85913314-85913333 | Msa0383130:CDS | 30.0% | |
| TTCTTCCAAATCAACCAAAT+CGG | - | chr3_1:85913338-85913357 | Msa0383130:CDS | 30.0% | |
| !! | TGTTGTTGTTTATTGATTCC+TGG | - | chr3_1:85913550-85913569 | Msa0383130:intron | 30.0% |
| !! | GTTGATGACTATTGAGATTA+AGG | - | chr3_1:85913720-85913739 | Msa0383130:intron | 30.0% |
| TTTATGTGCTTACTTTGCTT+TGG | - | chr3_1:85914044-85914063 | Msa0383130:CDS | 30.0% | |
| ! | TTATCTGTGTTTTCTTTGTG+TGG | - | chr3_1:85914291-85914310 | Msa0383130:intron | 30.0% |
| ! | GCTCTGAATAATAAATACCT+TGG | + | chr3_1:85914649-85914668 | None:intergenic | 30.0% |
| CTGCATCTTACATTATTTGT+AGG | - | chr3_1:85914668-85914687 | Msa0383130:intron | 30.0% | |
| TCAGCGAAAAAAGATGAAAA+TGG | + | chr3_1:85914814-85914833 | None:intergenic | 30.0% | |
| ATTCGCAAAATTGTATTTGC+AGG | - | chr3_1:85914963-85914982 | Msa0383130:intron | 30.0% | |
| ! | ATCCTTCTTTTTCTTCTTCT+TGG | + | chr3_1:85915066-85915085 | None:intergenic | 30.0% |
| !!! | TTTTCAACATCAGAAGTGTT+GGG | + | chr3_1:85915125-85915144 | None:intergenic | 30.0% |
| !! | ATTTTCAACATCAGAAGTGT+TGG | + | chr3_1:85915126-85915145 | None:intergenic | 30.0% |
| TTAAGAAAGTTGCTTCTATG+AGG | - | chr3_1:85915186-85915205 | Msa0383130:CDS | 30.0% | |
| TATTACTAGTCGTATTCCAA+TGG | - | chr3_1:85915435-85915454 | Msa0383130:five_prime_UTR | 30.0% | |
| !!! | ATGAACTACTTTTTGTGTAC+TGG | - | chr3_1:85915553-85915572 | Msa0383130:five_prime_UTR | 30.0% |
| !!! | TGAACTACTTTTTGTGTACT+GGG | - | chr3_1:85915554-85915573 | Msa0383130:five_prime_UTR | 30.0% |
| !!! | TATGGCGGATTAATTAGTTT+TGG | - | chr3_1:85915590-85915609 | Msa0383130:five_prime_UTR | 30.0% |
| TTGAATCGCGTTGTTAAGAA+TGG | - | chr3_1:85913194-85913213 | Msa0383130:exon | 35.0% | |
| CAAATCAACCAAATCGGAAT+CGG | - | chr3_1:85913344-85913363 | Msa0383130:CDS | 35.0% | |
| TGAACAAACCTCAAAATGCT+CGG | + | chr3_1:85913502-85913521 | None:intergenic | 35.0% | |
| AAGCACATAAAGTGAGTAAC+AGG | + | chr3_1:85913595-85913614 | None:intergenic | 35.0% | |
| GTTACTCACTTTATGTGCTT+AGG | - | chr3_1:85913595-85913614 | Msa0383130:intron | 35.0% | |
| TCACTTTATGTGCTTAGGTA+AGG | - | chr3_1:85913600-85913619 | Msa0383130:intron | 35.0% | |
| TGGTTATGCCTGTTCTTATT+AGG | - | chr3_1:85914064-85914083 | Msa0383130:CDS | 35.0% | |
| TCAGGTATCCTAATAAGAAC+AGG | + | chr3_1:85914075-85914094 | None:intergenic | 35.0% | |
| TTGTGTGGTTATTGCTTGAA+TGG | - | chr3_1:85914306-85914325 | Msa0383130:intron | 35.0% | |
| !! | TATTTTAGATGAAGGTGACG+AGG | - | chr3_1:85914400-85914419 | Msa0383130:intron | 35.0% |
| ! | CTTCTTCTTCCTTTCCTTTT+TGG | + | chr3_1:85914543-85914562 | None:intergenic | 35.0% |
| CAAAAAGGAAAGGAAGAAGA+AGG | - | chr3_1:85914541-85914560 | Msa0383130:intron | 35.0% | |
| ACACAGAATGAAAGCAATGA+TGG | - | chr3_1:85914605-85914624 | Msa0383130:intron | 35.0% | |
| AATGAAAGCAATGATGGTCA+AGG | - | chr3_1:85914611-85914630 | Msa0383130:intron | 35.0% | |
| AAATACCTTGGGATTCATCT+TGG | + | chr3_1:85914637-85914656 | None:intergenic | 35.0% | |
| !!! | TTTCATCTTTTTTCGCTGAC+AGG | - | chr3_1:85914815-85914834 | Msa0383130:intron | 35.0% |
| ! | AGGATAAGAAAGGTGTAGAT+GGG | - | chr3_1:85914994-85915013 | Msa0383130:intron | 35.0% |
| TTTCTTCTTCTTGGCATTCT+TGG | + | chr3_1:85915057-85915076 | None:intergenic | 35.0% | |
| TGCCAAGAAGAAGAAAAAGA+AGG | - | chr3_1:85915061-85915080 | Msa0383130:CDS | 35.0% | |
| AAAGAAGGATAAAGCTTCCA+AGG | - | chr3_1:85915076-85915095 | Msa0383130:CDS | 35.0% | |
| TTCTGATGTTGAAAATGCAG+AGG | - | chr3_1:85915130-85915149 | Msa0383130:CDS | 35.0% | |
| TCTTTCACATCAACAACAGA+TGG | + | chr3_1:85915161-85915180 | None:intergenic | 35.0% | |
| TATTGATGTAAAGGAGAGCA+AGG | + | chr3_1:85915349-85915368 | None:intergenic | 35.0% | |
| GCTAAAGCCAACTGTTTATT+CGG | + | chr3_1:85915405-85915424 | None:intergenic | 35.0% | |
| AGACAATATCTCAAGTCCAT+TGG | + | chr3_1:85915454-85915473 | None:intergenic | 35.0% | |
| !!! | GAACTACTTTTTGTGTACTG+GGG | - | chr3_1:85915555-85915574 | Msa0383130:five_prime_UTR | 35.0% |
| GCTAGGGTTATATCACAAGA+CGG | + | chr3_1:85912845-85912864 | None:intergenic | 40.0% | |
| TGATATAACCCTAGCTAGCT+GGG | - | chr3_1:85912850-85912869 | Msa0383130:three_prime_UTR | 40.0% | |
| TGTAAGAAAAGAGTGAGAGG+CGG | + | chr3_1:85912928-85912947 | None:intergenic | 40.0% | |
| ATCGCGTTGTTAAGAATGGT+TGG | - | chr3_1:85913198-85913217 | Msa0383130:exon | 40.0% | |
| !! | TTGTTAAGAATGGTTGGTGG+TGG | - | chr3_1:85913204-85913223 | Msa0383130:exon | 40.0% |
| GAAGAAGAAGAAATCGGACA+AGG | - | chr3_1:85913296-85913315 | Msa0383130:CDS | 40.0% | |
| !! | CGATTCCGATTTGGTTGATT+TGG | + | chr3_1:85913346-85913365 | None:intergenic | 40.0% |
| GAACAAACCTCAAAATGCTC+GGG | + | chr3_1:85913501-85913520 | None:intergenic | 40.0% | |
| !! | CTTTTTGGAGAGTTGACGTT+CGG | + | chr3_1:85914528-85914547 | None:intergenic | 40.0% |
| GTCAACTCTCCAAAAAGGAA+AGG | - | chr3_1:85914531-85914550 | Msa0383130:intron | 40.0% | |
| !! | GAGGCTCTTTTAGCTGATTT+TGG | - | chr3_1:85914578-85914597 | Msa0383130:intron | 40.0% |
| TAGAACGAATGCATGAGCAA+CGG | + | chr3_1:85914732-85914751 | None:intergenic | 40.0% | |
| ATGCATTCGTTCTACACTAC+TGG | - | chr3_1:85914738-85914757 | Msa0383130:intron | 40.0% | |
| ! | CTGGTCTTTCTTTCTCTGTT+TGG | - | chr3_1:85914757-85914776 | Msa0383130:intron | 40.0% |
| CTAGATCTTTGAGCAAAAGC+AGG | + | chr3_1:85914789-85914808 | None:intergenic | 40.0% | |
| TCTACACCTTTCTTATCCTG+AGG | + | chr3_1:85914993-85915012 | None:intergenic | 40.0% | |
| ! | CAGGATAAGAAAGGTGTAGA+TGG | - | chr3_1:85914993-85915012 | Msa0383130:intron | 40.0% |
| ! | GGATAAGAAAGGTGTAGATG+GGG | - | chr3_1:85914995-85915014 | Msa0383130:intron | 40.0% |
| AAGGAGGTGAAAGAGTCTAA+CGG | - | chr3_1:85915095-85915114 | Msa0383130:CDS | 40.0% | |
| TGATGTTGAAAATGCAGAGG+AGG | - | chr3_1:85915133-85915152 | Msa0383130:CDS | 40.0% | |
| ATTACAACCAACAACCTGTG+CGG | - | chr3_1:85915315-85915334 | Msa0383130:exon | 40.0% | |
| GCTCTCCTTTACATCAATAC+AGG | - | chr3_1:85915350-85915369 | Msa0383130:five_prime_UTR | 40.0% | |
| TCGGCATCATCATATGAACA+AGG | + | chr3_1:85915386-85915405 | None:intergenic | 40.0% | |
| GATGATGCCGAATAAACAGT+TGG | - | chr3_1:85915395-85915414 | Msa0383130:five_prime_UTR | 40.0% | |
| !! | AAACAGTTGGCTTTAGCTCT+TGG | - | chr3_1:85915408-85915427 | Msa0383130:five_prime_UTR | 40.0% |
| ! | TTTGTGTACTGGGGTTGTTT+TGG | - | chr3_1:85915564-85915583 | Msa0383130:five_prime_UTR | 40.0% |
| ! | GTGCTGTGTTGCTACTTATA+TGG | - | chr3_1:85915641-85915660 | Msa0383130:five_prime_UTR | 40.0% |
| GTGATATAACCCTAGCTAGC+TGG | - | chr3_1:85912849-85912868 | Msa0383130:three_prime_UTR | 45.0% | |
| GGGAAATCGAGATTAGGGTT+TGG | + | chr3_1:85912957-85912976 | None:intergenic | 45.0% | |
| TTGGGGGGAAATCGAGATTA+GGG | + | chr3_1:85912962-85912981 | None:intergenic | 45.0% | |
| ATTGGGGGGAAATCGAGATT+AGG | + | chr3_1:85912963-85912982 | None:intergenic | 45.0% | |
| ! | AGATTGAGATCTGGGATTGG+GGG | + | chr3_1:85912978-85912997 | None:intergenic | 45.0% |
| ! | GAGATTGAGATCTGGGATTG+GGG | + | chr3_1:85912979-85912998 | None:intergenic | 45.0% |
| ! | GGAGATTGAGATCTGGGATT+GGG | + | chr3_1:85912980-85912999 | None:intergenic | 45.0% |
| ! | AGGAGATTGAGATCTGGGAT+TGG | + | chr3_1:85912981-85913000 | None:intergenic | 45.0% |
| GCGTTGTTAAGAATGGTTGG+TGG | - | chr3_1:85913201-85913220 | Msa0383130:exon | 45.0% | |
| ! | ATCAAGCGCTGCAAAAACGT+TGG | + | chr3_1:85913268-85913287 | None:intergenic | 45.0% |
| ACCGTTGAATGCAACCTCAT+GGG | - | chr3_1:85913392-85913411 | Msa0383130:CDS | 45.0% | |
| ! | TGTTACATGGGTGCGCATTT+TGG | - | chr3_1:85914158-85914177 | Msa0383130:intron | 45.0% |
| TTTAGATGAAGGTGACGAGG+AGG | - | chr3_1:85914403-85914422 | Msa0383130:intron | 45.0% | |
| TTCTTCTTGACCTCAGGTTC+AGG | + | chr3_1:85914476-85914495 | None:intergenic | 45.0% | |
| TCAGCATTCTTCTTGACCTC+AGG | + | chr3_1:85914482-85914501 | None:intergenic | 45.0% | |
| CGAACGTCAACTCTCCAAAA+AGG | - | chr3_1:85914526-85914545 | Msa0383130:intron | 45.0% | |
| GAAGGAACTTGAAGAGCTTG+AGG | - | chr3_1:85914559-85914578 | Msa0383130:intron | 45.0% | |
| GTGCATGTCAATCTAGATGC+AGG | - | chr3_1:85914909-85914928 | Msa0383130:intron | 45.0% | |
| GAAGGATAAAGCTTCCAAGG+AGG | - | chr3_1:85915079-85915098 | Msa0383130:CDS | 45.0% | |
| GTTAGACTCTTTCACCTCCT+TGG | + | chr3_1:85915096-85915115 | None:intergenic | 45.0% | |
| AGCAGCGTCCATTTCTTTAC+TGG | + | chr3_1:85915222-85915241 | None:intergenic | 45.0% | |
| ! | GCACAGGTTGTTGGTTGTAA+TGG | + | chr3_1:85915316-85915335 | None:intergenic | 45.0% |
| ! | TCTTTTACCGCACAGGTTGT+TGG | + | chr3_1:85915325-85915344 | None:intergenic | 45.0% |
| !!! | CTGGGGTTGTTTTGGCTTTA+TGG | - | chr3_1:85915572-85915591 | Msa0383130:five_prime_UTR | 45.0% |
| !!! | GGGTTGTTTTGGCTTTATGG+CGG | - | chr3_1:85915575-85915594 | Msa0383130:five_prime_UTR | 45.0% |
| GTTCTCTTCCCAGCTAGCTA+GGG | + | chr3_1:85912861-85912880 | None:intergenic | 50.0% | |
| TGTTCTCTTCCCAGCTAGCT+AGG | + | chr3_1:85912862-85912881 | None:intergenic | 50.0% | |
| AGGCGGAGAATGGGATATAG+AGG | + | chr3_1:85912911-85912930 | None:intergenic | 50.0% | |
| AAGAGTGAGAGGCGGAGAAT+GGG | + | chr3_1:85912920-85912939 | None:intergenic | 50.0% | |
| AAAGAGTGAGAGGCGGAGAA+TGG | + | chr3_1:85912921-85912940 | None:intergenic | 50.0% | |
| ! | GATTGAGATCTGGGATTGGG+GGG | + | chr3_1:85912977-85912996 | None:intergenic | 50.0% |
| TGGTGGAAGCAGAAGAGATG+AGG | - | chr3_1:85913221-85913240 | Msa0383130:CDS | 50.0% | |
| GGTGGAAGCAGAAGAGATGA+GGG | - | chr3_1:85913222-85913241 | Msa0383130:CDS | 50.0% | |
| CAGAAGAGATGAGGGTTCGT+TGG | - | chr3_1:85913230-85913249 | Msa0383130:CDS | 50.0% | |
| CGCTGCAAAAACGTTGGTGT+TGG | + | chr3_1:85913262-85913281 | None:intergenic | 50.0% | |
| CTGCGATTCCGATTCCGATT+TGG | + | chr3_1:85913355-85913374 | None:intergenic | 50.0% | |
| CAAATCGGAATCGGAATCGC+AGG | - | chr3_1:85913353-85913372 | Msa0383130:CDS | 50.0% | |
| ! | AATCGGAATCGCAGGCGTTT+TGG | - | chr3_1:85913361-85913380 | Msa0383130:CDS | 50.0% |
| ! | ATCGGAATCGCAGGCGTTTT+GGG | - | chr3_1:85913362-85913381 | Msa0383130:CDS | 50.0% |
| CACCGTTGAATGCAACCTCA+TGG | - | chr3_1:85913391-85913410 | Msa0383130:CDS | 50.0% | |
| GCCCATGAGGTTGCATTCAA+CGG | + | chr3_1:85913396-85913415 | None:intergenic | 50.0% | |
| TGAGGGTCGGAAAATTGAGG+CGG | + | chr3_1:85913462-85913481 | None:intergenic | 50.0% | |
| GGTTGAGGGTCGGAAAATTG+AGG | + | chr3_1:85913465-85913484 | None:intergenic | 50.0% | |
| ! | GTTTGTCCTCACTGGGTTGA+GGG | + | chr3_1:85913479-85913498 | None:intergenic | 50.0% |
| ! | GGACAAACCCGAGCATTTTG+AGG | - | chr3_1:85913491-85913510 | Msa0383130:CDS | 50.0% |
| TCAGGTTTCACAGTGTGCTC+TGG | + | chr3_1:85914458-85914477 | None:intergenic | 50.0% | |
| CACTGTGAAACCTGAACCTG+AGG | - | chr3_1:85914463-85914482 | Msa0383130:intron | 50.0% | |
| TGAAGTTCCAGCTGCACCAA+AGG | - | chr3_1:85914499-85914518 | Msa0383130:intron | 50.0% | |
| CAAGGCCAAGATGAATCCCA+AGG | - | chr3_1:85914629-85914648 | Msa0383130:intron | 50.0% | |
| TGTATTTGCAGGTGCACCTC+AGG | - | chr3_1:85914974-85914993 | Msa0383130:intron | 50.0% | |
| GGTGCACCTCAGGATAAGAA+AGG | - | chr3_1:85914984-85915003 | Msa0383130:intron | 50.0% | |
| GGTGTAGATGGGGATGTAGA+TGG | - | chr3_1:85915005-85915024 | Msa0383130:intron | 50.0% | |
| ! | GCAAGGTTCTTTTACCGCAC+AGG | + | chr3_1:85915332-85915351 | None:intergenic | 50.0% |
| TGCGAGAGAGAGAGAGAGAG+AGG | + | chr3_1:85912888-85912907 | None:intergenic | 55.0% | |
| GAGGTTGCATTCAACGGTGC+CGG | + | chr3_1:85913390-85913409 | None:intergenic | 55.0% | |
| ! | TGCAACCTCATGGGCTGATG+TGG | - | chr3_1:85913401-85913420 | Msa0383130:CDS | 55.0% |
| GTCATCCACATCAGCCCATG+AGG | + | chr3_1:85913409-85913428 | None:intergenic | 55.0% | |
| GTCGGAAAATTGAGGCGGTG+CGG | + | chr3_1:85913457-85913476 | None:intergenic | 55.0% | |
| GGTTTGTCCTCACTGGGTTG+AGG | + | chr3_1:85913480-85913499 | None:intergenic | 55.0% | |
| TGCTCGGGTTTGTCCTCACT+GGG | + | chr3_1:85913486-85913505 | None:intergenic | 55.0% | |
| ATGCTCGGGTTTGTCCTCAC+TGG | + | chr3_1:85913487-85913506 | None:intergenic | 55.0% | |
| TGAAGGTGACGAGGAGGTAG+AGG | - | chr3_1:85914409-85914428 | Msa0383130:intron | 55.0% | |
| AGTTCCAGCTGCACCAAAGG+AGG | - | chr3_1:85914502-85914521 | Msa0383130:intron | 55.0% | |
| AGTTGACGTTCGGCCTCCTT+TGG | + | chr3_1:85914518-85914537 | None:intergenic | 55.0% | |
| TGCTAGAGCTGCTGCTCAAG+AGG | - | chr3_1:85915241-85915260 | Msa0383130:CDS | 55.0% | |
| !! | ATCGCAGGCGTTTTGGGCTC+CGG | - | chr3_1:85913368-85913387 | Msa0383130:CDS | 60.0% |
| GGAAAATTGAGGCGGTGCGG+TGG | + | chr3_1:85913454-85913473 | None:intergenic | 60.0% | |
| TTCCGACCCTCAACCCAGTG+AGG | - | chr3_1:85913470-85913489 | Msa0383130:CDS | 60.0% | |
| ! | GTCCTCACTGGGTTGAGGGT+CGG | + | chr3_1:85913475-85913494 | None:intergenic | 60.0% |
| CTGCTCAAGAGGCTGCTGCA+AGG | - | chr3_1:85915252-85915271 | Msa0383130:CDS | 60.0% | |
| AGGCTGCTGCAAGGAACGCA+AGG | - | chr3_1:85915261-85915280 | Msa0383130:CDS | 60.0% | |
| ! | TCGGCCTCCTTTGGTGCAGC+TGG | + | chr3_1:85914509-85914528 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 85912827 | 85915719 | 85912827 | ID=Msa0383130;Name=Msa0383130 |
| chr3_1 | mRNA | 85912827 | 85915719 | 85912827 | ID=Msa0383130-mRNA-1;Parent=Msa0383130;Name=Msa0383130-mRNA-1;_AED=0.03;_eAED=0.03;_QI=331|1|1|1|0.5|0.4|5|379|308 |
| chr3_1 | exon | 85912827 | 85913561 | 85912827 | ID=Msa0383130-mRNA-1:exon:22666;Parent=Msa0383130-mRNA-1 |
| chr3_1 | exon | 85913896 | 85914166 | 85913896 | ID=Msa0383130-mRNA-1:exon:22665;Parent=Msa0383130-mRNA-1 |
| chr3_1 | exon | 85915034 | 85915486 | 85915034 | ID=Msa0383130-mRNA-1:exon:22664;Parent=Msa0383130-mRNA-1 |
| chr3_1 | exon | 85915519 | 85915610 | 85915519 | ID=Msa0383130-mRNA-1:exon:22663;Parent=Msa0383130-mRNA-1 |
| chr3_1 | exon | 85915634 | 85915719 | 85915634 | ID=Msa0383130-mRNA-1:exon:22662;Parent=Msa0383130-mRNA-1 |
| chr3_1 | five_prime_UTR | 85915634 | 85915719 | 85915634 | ID=Msa0383130-mRNA-1:five_prime_utr;Parent=Msa0383130-mRNA-1 |
| chr3_1 | five_prime_UTR | 85915519 | 85915610 | 85915519 | ID=Msa0383130-mRNA-1:five_prime_utr;Parent=Msa0383130-mRNA-1 |
| chr3_1 | five_prime_UTR | 85915334 | 85915486 | 85915334 | ID=Msa0383130-mRNA-1:five_prime_utr;Parent=Msa0383130-mRNA-1 |
| chr3_1 | CDS | 85915034 | 85915333 | 85915034 | ID=Msa0383130-mRNA-1:cds;Parent=Msa0383130-mRNA-1 |
| chr3_1 | CDS | 85913896 | 85914166 | 85913896 | ID=Msa0383130-mRNA-1:cds;Parent=Msa0383130-mRNA-1 |
| chr3_1 | CDS | 85913206 | 85913561 | 85913206 | ID=Msa0383130-mRNA-1:cds;Parent=Msa0383130-mRNA-1 |
| chr3_1 | three_prime_UTR | 85912827 | 85913205 | 85912827 | ID=Msa0383130-mRNA-1:three_prime_utr;Parent=Msa0383130-mRNA-1 |
| Gene Sequence |
| Protein sequence |
