Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0463520 | XP_003600923.1 | 99.083 | 218 | 0 | 1 | 21 | 238 | 1 | 216 | 2.94e-152 | 432 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0463520 | sp|Q8VZB9|R10A1_ARATH | 88.073 | 218 | 24 | 1 | 21 | 238 | 1 | 216 | 9.65e-125 | 355 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0463520 | B7FGL9 | 99.083 | 218 | 0 | 1 | 21 | 238 | 1 | 216 | 1.41e-152 | 432 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0027590 | Msa0463520 | 0.840771 | 7.115221e-58 | -8.615850e-47 |
| Msa0040220 | Msa0463520 | 0.835936 | 1.255467e-56 | -8.615850e-47 |
| Msa0042480 | Msa0463520 | 0.801516 | 8.679071e-49 | -8.615850e-47 |
| Msa0070840 | Msa0463520 | 0.808889 | 2.481144e-50 | -8.615850e-47 |
| Msa0075350 | Msa0463520 | 0.842176 | 3.033624e-58 | -8.615850e-47 |
| Msa0087910 | Msa0463520 | 0.845519 | 3.861546e-59 | -8.615850e-47 |
| Msa0128330 | Msa0463520 | 0.820423 | 6.914142e-53 | -8.615850e-47 |
| Msa0128750 | Msa0463520 | 0.803175 | 3.952512e-49 | -8.615850e-47 |
| Msa0134580 | Msa0463520 | 0.823179 | 1.592531e-53 | -8.615850e-47 |
| Msa0174580 | Msa0463520 | 0.806833 | 6.787696e-50 | -8.615850e-47 |
| Msa0191450 | Msa0463520 | 0.825172 | 5.417573e-54 | -8.615850e-47 |
| Msa0191550 | Msa0463520 | 0.810301 | 1.234104e-50 | -8.615850e-47 |
| Msa0192750 | Msa0463520 | 0.830949 | 2.200891e-55 | -8.615850e-47 |
| Msa0194940 | Msa0463520 | 0.824981 | 6.012110e-54 | -8.615850e-47 |
| Msa0210330 | Msa0463520 | 0.819903 | 9.095240e-53 | -8.615850e-47 |
| Msa0210360 | Msa0463520 | 0.854540 | 1.149806e-61 | -8.615850e-47 |
| Msa0222730 | Msa0463520 | 0.821529 | 3.847537e-53 | -8.615850e-47 |
| Msa0223440 | Msa0463520 | 0.816245 | 6.107290e-52 | -8.615850e-47 |
| Msa0235050 | Msa0463520 | 0.801431 | 9.031606e-49 | -8.615850e-47 |
| Msa0369410 | Msa0463520 | 0.890296 | 1.119776e-73 | -8.615850e-47 |
| Msa0426090 | Msa0463520 | 0.853790 | 1.893459e-61 | -8.615850e-47 |
| Msa0426250 | Msa0463520 | 0.837591 | 4.750398e-57 | -8.615850e-47 |
| Msa0463520 | Msa0471880 | 0.821287 | 4.375209e-53 | -8.615850e-47 |
| Msa0463520 | Msa0472480 | 0.849945 | 2.334792e-60 | -8.615850e-47 |
| Msa0463520 | Msa0475810 | 0.840069 | 1.085493e-57 | -8.615850e-47 |
| Msa0463520 | Msa0481520 | 0.866785 | 2.212056e-65 | -8.615850e-47 |
| Msa0463520 | Msa0481850 | 0.828123 | 1.070724e-54 | -8.615850e-47 |
| Msa0463520 | Msa0517480 | 0.812890 | 3.376101e-51 | -8.615850e-47 |
| Msa0463520 | Msa0529900 | 0.807095 | 5.974614e-50 | -8.615850e-47 |
| Msa0463520 | Msa0540480 | 0.823401 | 1.412604e-53 | -8.615850e-47 |
| Msa0463520 | Msa0573550 | 0.806482 | 8.052240e-50 | -8.615850e-47 |
| Msa0463520 | Msa0584030 | 0.805297 | 1.429021e-49 | -8.615850e-47 |
| Msa0463520 | Msa0596370 | 0.842033 | 3.310904e-58 | -8.615850e-47 |
| Msa0463520 | Msa0597240 | 0.825988 | 3.470526e-54 | -8.615850e-47 |
| Msa0463520 | Msa0653060 | 0.823109 | 1.652921e-53 | -8.615850e-47 |
| Msa0463520 | Msa0694400 | 0.813817 | 2.112347e-51 | -8.615850e-47 |
| Msa0463520 | Msa0705800 | 0.861641 | 8.894080e-64 | -8.615850e-47 |
| Msa0463520 | Msa0712610 | 0.828471 | 8.827738e-55 | -8.615850e-47 |
| Msa0463520 | Msa0717380 | 0.837873 | 4.020728e-57 | -8.615850e-47 |
| Msa0463520 | Msa0783630 | 0.812467 | 4.178395e-51 | -8.615850e-47 |
| Msa0463520 | Msa0788380 | 0.852651 | 4.013602e-61 | -8.615850e-47 |
| Msa0463520 | Msa0799830 | 0.836062 | 1.166406e-56 | -8.615850e-47 |
| Msa0463520 | Msa0876170 | 0.811904 | 5.544079e-51 | -8.615850e-47 |
| Msa0463520 | Msa0915540 | 0.832383 | 9.756093e-56 | -8.615850e-47 |
| Msa0463520 | Msa0929700 | 0.810942 | 8.970064e-51 | -8.615850e-47 |
| Msa0463520 | Msa1037290 | 0.831529 | 1.585551e-55 | -8.615850e-47 |
| Msa0463520 | Msa1040160 | 0.880381 | 5.754938e-70 | -8.615850e-47 |
| Msa0463520 | Msa1041680 | 0.839327 | 1.692948e-57 | -8.615850e-47 |
| Msa0463520 | Msa1042100 | 0.817843 | 2.671537e-52 | -8.615850e-47 |
| Msa0463520 | Msa1058700 | 0.832908 | 7.227177e-56 | -8.615850e-47 |
| Msa0463520 | Msa1078870 | 0.827114 | 1.870248e-54 | -8.615850e-47 |
| Msa0463520 | Msa1078980 | 0.825051 | 5.785921e-54 | -8.615850e-47 |
| Msa0463520 | Msa1080350 | 0.821058 | 4.941173e-53 | -8.615850e-47 |
| Msa0463520 | Msa1082170 | 0.823492 | 1.345302e-53 | -8.615850e-47 |
| Msa0463520 | Msa1083370 | 0.859340 | 4.425828e-63 | -8.615850e-47 |
| Msa0463520 | Msa1088490 | 0.801929 | 7.140042e-49 | -8.615850e-47 |
| Msa0463520 | Msa1094380 | 0.820600 | 6.294726e-53 | -8.615850e-47 |
| Msa0463520 | Msa1124850 | 0.817476 | 3.233700e-52 | -8.615850e-47 |
| Msa0463520 | Msa1125860 | 0.806539 | 7.833578e-50 | -8.615850e-47 |
| Msa0463520 | Msa1126060 | 0.809726 | 1.640718e-50 | -8.615850e-47 |
| Msa0463520 | Msa1126520 | 0.837550 | 4.864801e-57 | -8.615850e-47 |
| Msa0463520 | Msa1164150 | 0.826201 | 3.088785e-54 | -8.615850e-47 |
| Msa0463520 | Msa1166570 | 0.845098 | 5.018613e-59 | -8.615850e-47 |
| Msa0463520 | Msa1167540 | 0.850651 | 1.479382e-60 | -8.615850e-47 |
| Msa0463520 | Msa1167550 | 0.847181 | 1.360113e-59 | -8.615850e-47 |
| Msa0463520 | Msa1169180 | 0.818272 | 2.137727e-52 | -8.615850e-47 |
| Msa0463520 | Msa1180000 | 0.811655 | 6.282042e-51 | -8.615850e-47 |
| Msa0463520 | Msa1186030 | 0.832584 | 8.696239e-56 | -8.615850e-47 |
| Msa0463520 | Msa1218170 | 0.813647 | 2.302527e-51 | -8.615850e-47 |
| Msa0463520 | Msa1240270 | 0.827888 | 1.220021e-54 | -8.615850e-47 |
| Msa0463520 | Msa1258540 | 0.830517 | 2.808287e-55 | -8.615850e-47 |
| Msa0463520 | Msa1270640 | 0.802302 | 5.984482e-49 | -8.615850e-47 |
| Msa0463520 | Msa1311400 | 0.831286 | 1.819701e-55 | -8.615850e-47 |
| Msa0463520 | Msa1332250 | 0.816526 | 5.284459e-52 | -8.615850e-47 |
| Msa0463520 | Msa1356790 | 0.827264 | 1.721921e-54 | -8.615850e-47 |
| Msa0463520 | Msa1362790 | 0.800603 | 1.333963e-48 | -8.615850e-47 |
| Msa0463520 | Msa1368920 | 0.831687 | 1.449023e-55 | -8.615850e-47 |
| Msa0463520 | Msa1374240 | 0.808915 | 2.449026e-50 | -8.615850e-47 |
| Msa0463520 | Msa1392590 | 0.824400 | 8.238437e-54 | -8.615850e-47 |
| Msa0463520 | Msa1397100 | 0.822869 | 1.880750e-53 | -8.615850e-47 |
| Msa0463520 | Msa1403910 | 0.854115 | 1.526259e-61 | -8.615850e-47 |
| Msa0463520 | Msa1426120 | 0.833646 | 4.732417e-56 | -8.615850e-47 |
| Msa0463520 | Msa1426490 | 0.828602 | 8.207541e-55 | -8.615850e-47 |
| Msa0463520 | Msa1463570 | 0.823471 | 1.360901e-53 | -8.615850e-47 |
| Msa0297830 | Msa0463520 | 0.837660 | 4.559947e-57 | -8.615850e-47 |
| Msa0301220 | Msa0463520 | 0.858364 | 8.667259e-63 | -8.615850e-47 |
| Msa0315430 | Msa0463520 | 0.811360 | 7.280071e-51 | -8.615850e-47 |
| Msa0335840 | Msa0463520 | 0.854511 | 1.172214e-61 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0463520 | MtrunA17_Chr3g0113691 | 99.083 | 218 | 0 | 1 | 21 | 238 | 1 | 216 | 2.71e-156 | 432 |
| Msa0463520 | MtrunA17_Chr2g0321491 | 97.706 | 218 | 3 | 1 | 21 | 238 | 1 | 216 | 5.24e-155 | 429 |
| Msa0463520 | MtrunA17_Chr5g0399471 | 96.789 | 218 | 5 | 1 | 21 | 238 | 1 | 216 | 1.05e-153 | 426 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0463520 | AT1G08360.1 | 88.073 | 218 | 24 | 1 | 21 | 238 | 1 | 216 | 9.81e-126 | 355 |
| Msa0463520 | AT5G22440.1 | 89.041 | 219 | 21 | 2 | 21 | 238 | 1 | 217 | 1.10e-124 | 352 |
| Msa0463520 | AT5G22440.2 | 89.041 | 219 | 21 | 2 | 21 | 238 | 1 | 217 | 1.10e-124 | 352 |
| Msa0463520 | AT2G27530.2 | 87.156 | 218 | 26 | 1 | 21 | 238 | 1 | 216 | 1.32e-124 | 352 |
| Msa0463520 | AT2G27530.1 | 87.156 | 218 | 26 | 1 | 21 | 238 | 1 | 216 | 1.32e-124 | 352 |
Find 49 sgRNAs with CRISPR-Local
Find 194 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTTTCCCTCAAGAGATTCT+TGG | 0.221837 | 3_3:-62872844 | None:intergenic |
| TAAACAAATTCCCCGTCTTT+TGG | 0.235742 | 3_3:+62872442 | Msa0463520:CDS |
| GAGACCATTGAACTTCAAAT+TGG | 0.290529 | 3_3:+62870508 | Msa0463520:CDS |
| TAAGAAAGCATGGTACTTCT+TGG | 0.344589 | 3_3:-62872402 | None:intergenic |
| TTGGTTTACGAACCTCATTT+TGG | 0.377155 | 3_3:-62870277 | None:intergenic |
| GCTACTCAACTCTTTATGAT+TGG | 0.399922 | 3_3:+62873732 | Msa0463520:three_prime_UTR |
| GAGACCAATTTGAAGTTCAA+TGG | 0.404007 | 3_3:-62870512 | None:intergenic |
| AGCATACAAAGCTTCATCTT+AGG | 0.414122 | 3_3:-62870601 | None:intergenic |
| GAAGATAGGTTTGGAATCAA+TGG | 0.426241 | 3_3:+62872325 | Msa0463520:CDS |
| GCAGGCAGAGAAGATAGGTT+TGG | 0.444089 | 3_3:+62872316 | Msa0463520:intron |
| GCTTCTGCTACAGAGCAAAA+TGG | 0.454827 | 3_3:-62870243 | None:intergenic |
| CTCTGCATGGGAGTAGCTGT+GGG | 0.459921 | 3_3:+62872911 | Msa0463520:CDS |
| ATATACCTCTTCGACGTGTT+GGG | 0.467119 | 3_3:-62870632 | None:intergenic |
| TATATACCTCTTCGACGTGT+TGG | 0.467153 | 3_3:-62870633 | None:intergenic |
| AATTTGCAGGCAGAGAAGAT+AGG | 0.475004 | 3_3:+62872311 | Msa0463520:intron |
| ATCTTAGGACGAGGGATATG+AGG | 0.482343 | 3_3:-62870586 | None:intergenic |
| CTTGTATCTGAAGAGTTCAA+TGG | 0.484688 | 3_3:+62873512 | Msa0463520:CDS |
| TTGTATCTGAAGAGTTCAAT+GGG | 0.501469 | 3_3:+62873513 | Msa0463520:CDS |
| GCTCTGCATGGGAGTAGCTG+TGG | 0.501869 | 3_3:+62872910 | Msa0463520:CDS |
| CCAAGAATCTCTTGAGGGAA+AGG | 0.504153 | 3_3:+62872844 | Msa0463520:CDS |
| AGAAGCAATCTCAGGAATCA+TGG | 0.510750 | 3_3:+62870453 | Msa0463520:CDS |
| TATTCGGACAAATGTATTGA+AGG | 0.516581 | 3_3:-62873607 | None:intergenic |
| GAGACCAGGACCCAAAAGAC+GGG | 0.519890 | 3_3:-62872453 | None:intergenic |
| GCAGTGAGAGAAGCAATCTC+AGG | 0.522147 | 3_3:+62870445 | Msa0463520:CDS |
| CAAAGCTTCATCTTAGGACG+AGG | 0.528067 | 3_3:-62870595 | None:intergenic |
| AAGATGAAGCTTTGTATGCT+CGG | 0.532764 | 3_3:+62870604 | Msa0463520:CDS |
| TCTTGGTGAGAGACAAGTGT+TGG | 0.535756 | 3_3:-62872827 | None:intergenic |
| GGTGAAATTTCAGCTAAAGA+AGG | 0.544360 | 3_3:+62872886 | Msa0463520:CDS |
| GCTAAAGAAGGTGCTCTGCA+TGG | 0.545816 | 3_3:+62872898 | Msa0463520:CDS |
| CTAAAGAAGGTGCTCTGCAT+GGG | 0.546643 | 3_3:+62872899 | Msa0463520:CDS |
| CTTGGTGAGAGACAAGTGTT+GGG | 0.551609 | 3_3:-62872826 | None:intergenic |
| TCTCACCAAGAATCTCTTGA+GGG | 0.555778 | 3_3:+62872839 | Msa0463520:CDS |
| GGTCCTGGTCTCAACAAGGC+AGG | 0.563119 | 3_3:+62872464 | Msa0463520:CDS |
| CCATGCTTTCTTAGCTTCTG+AGG | 0.565937 | 3_3:+62872412 | Msa0463520:CDS |
| AGGGATATGAGGCAACTTGA+CGG | 0.568095 | 3_3:-62870575 | None:intergenic |
| TTTGGGTCCTGGTCTCAACA+AGG | 0.572628 | 3_3:+62872460 | Msa0463520:CDS |
| GGTCAATGAGACAAAGGCTA+TGG | 0.576127 | 3_3:+62872865 | Msa0463520:CDS |
| TTGTAGTAAGCTTCAAAGTG+AGG | 0.594735 | 3_3:+62870423 | Msa0463520:intron |
| CCACAGATTCAACCAAAATG+AGG | 0.601275 | 3_3:+62870265 | Msa0463520:CDS |
| CCTCAGAAGCTAAGAAAGCA+TGG | 0.604392 | 3_3:-62872412 | None:intergenic |
| AGCTGTGGGCAATGTTAGCA+TGG | 0.607215 | 3_3:+62872925 | Msa0463520:CDS |
| AGATGCCCAACACGTCGAAG+AGG | 0.614877 | 3_3:+62870627 | Msa0463520:CDS |
| TGAGACCAGGACCCAAAAGA+CGG | 0.616750 | 3_3:-62872454 | None:intergenic |
| CTCTCACCAAGAATCTCTTG+AGG | 0.617687 | 3_3:+62872838 | Msa0463520:CDS |
| ATGCCTGCCTTGTTGAGACC+AGG | 0.624246 | 3_3:-62872467 | None:intergenic |
| GGGAAAGGTCAATGAGACAA+AGG | 0.641581 | 3_3:+62872859 | Msa0463520:CDS |
| AAAGCTTCATCTTAGGACGA+GGG | 0.681120 | 3_3:-62870594 | None:intergenic |
| ATAAGTTCCCTTAAAAGACA+CGG | 0.683519 | 3_3:-62873545 | None:intergenic |
| AGACCAGGACCCAAAAGACG+GGG | 0.716978 | 3_3:-62872452 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAACAAAAATACATTAAAT+TGG | - | chr3_3:62870690-62870709 | None:intergenic | 10.0% |
| !! | ATATAATATTCTAATCTCAT+TGG | - | chr3_3:62871071-62871090 | None:intergenic | 15.0% |
| !! | AGATAGAATTTATCTTATAT+AGG | - | chr3_3:62871103-62871122 | None:intergenic | 15.0% |
| !! | TGTAAAATCCTAATATAAAT+CGG | + | chr3_3:62871122-62871141 | Msa0463520:intron | 15.0% |
| !! | AAAAAAGAAAAAGAGAAAAA+AGG | - | chr3_3:62871434-62871453 | None:intergenic | 15.0% |
| !! | AGAATAAAAAAAATATGAGA+TGG | - | chr3_3:62871869-62871888 | None:intergenic | 15.0% |
| !! | TGATTTCGTATATTATTAAA+TGG | + | chr3_3:62872135-62872154 | Msa0463520:intron | 15.0% |
| !! | GTATATTATTAAATGGATAA+TGG | + | chr3_3:62872142-62872161 | Msa0463520:intron | 15.0% |
| !!! | GAATTCATTTATAGATTTTT+AGG | - | chr3_3:62872644-62872663 | None:intergenic | 15.0% |
| !!! | AATTTTTTAACACTGATTTA+CGG | + | chr3_3:62873369-62873388 | Msa0463520:intron | 15.0% |
| !! | CTTAAATATTGAAAAATGAA+AGG | - | chr3_3:62873573-62873592 | None:intergenic | 15.0% |
| !!! | TCTAAGTTTTTACTGTTTTA+AGG | + | chr3_3:62870932-62870951 | Msa0463520:intron | 20.0% |
| !!! | CTAAGTTTTTACTGTTTTAA+GGG | + | chr3_3:62870933-62870952 | Msa0463520:intron | 20.0% |
| !! | AAAGAAATGAGATATCAAAT+TGG | - | chr3_3:62871044-62871063 | None:intergenic | 20.0% |
| !! | GTACAATATATATCAATCAA+TGG | - | chr3_3:62871282-62871301 | None:intergenic | 20.0% |
| !! | AATTCATTGAATGAAATACT+TGG | - | chr3_3:62872696-62872715 | None:intergenic | 20.0% |
| !! | TAAAATATACCTTTCAAACA+AGG | - | chr3_3:62872720-62872739 | None:intergenic | 20.0% |
| !! | ATTTCAGAATTCAACAATTA+TGG | + | chr3_3:62872757-62872776 | Msa0463520:intron | 20.0% |
| !! | GTGTTAAAAAATTTCAACTA+GGG | - | chr3_3:62873362-62873381 | None:intergenic | 20.0% |
| !! | AGTGTTAAAAAATTTCAACT+AGG | - | chr3_3:62873363-62873382 | None:intergenic | 20.0% |
| !!! | ATTTTTTAACACTGATTTAC+GGG | + | chr3_3:62873370-62873389 | Msa0463520:intron | 20.0% |
| !! | GGAAATATGAATCGATTTAT+TGG | - | chr3_3:62870299-62870318 | None:intergenic | 25.0% |
| !! | ATCAGAAAGCATAAATTAGA+TGG | - | chr3_3:62870320-62870339 | None:intergenic | 25.0% |
| ! | AAGAACAATGATAAGATCTA+CGG | - | chr3_3:62870662-62870681 | None:intergenic | 25.0% |
| ! | AAAATCCTAATATAAATCGG+TGG | + | chr3_3:62871125-62871144 | Msa0463520:intron | 25.0% |
| ! | ACTACATTGTCATCATAAAA+AGG | + | chr3_3:62871180-62871199 | Msa0463520:intron | 25.0% |
| ! | ATATATCAATCAATGGCATT+GGG | - | chr3_3:62871275-62871294 | None:intergenic | 25.0% |
| ! | TATATATCAATCAATGGCAT+TGG | - | chr3_3:62871276-62871295 | None:intergenic | 25.0% |
| !!! | TGTTTTTGTTTTTGTTGGTT+TGG | - | chr3_3:62871326-62871345 | None:intergenic | 25.0% |
| ! | ATAACAAAGGAAAATCAGAT+GGG | - | chr3_3:62871535-62871554 | None:intergenic | 25.0% |
| ! | ATCACTCATAAACATAACAA+AGG | - | chr3_3:62871548-62871567 | None:intergenic | 25.0% |
| !!! | AGTTTTTTTCCGTACTTAAA+GGG | + | chr3_3:62871594-62871613 | Msa0463520:intron | 25.0% |
| ! | AACATGATTTCCTTTACAAA+AGG | + | chr3_3:62871728-62871747 | Msa0463520:intron | 25.0% |
| !! | TCTGAATGTTTTCAGAAAAA+CGG | + | chr3_3:62871752-62871771 | Msa0463520:intron | 25.0% |
| ! | ATCACATATTGTACAAATTC+AGG | - | chr3_3:62871980-62871999 | None:intergenic | 25.0% |
| ! | AAGATTAAACACAAATGACT+AGG | - | chr3_3:62872284-62872303 | None:intergenic | 25.0% |
| !! | ATTTTTGTTAAGCTTCTTCA+AGG | - | chr3_3:62872360-62872379 | None:intergenic | 25.0% |
| ! | GCTTAACAAAAATAAGAAGT+TGG | + | chr3_3:62872367-62872386 | Msa0463520:CDS | 25.0% |
| !! | TAGGTTTTACGTTTATTTAC+CGG | + | chr3_3:62872505-62872524 | Msa0463520:intron | 25.0% |
| !!! | GAATTCTGAAATCTTAAGTA+CGG | - | chr3_3:62872749-62872768 | None:intergenic | 25.0% |
| !! | TATGTTTTGCATTACTTTAC+AGG | + | chr3_3:62872797-62872816 | Msa0463520:intron | 25.0% |
| !! | ATGTTTTGCATTACTTTACA+GGG | + | chr3_3:62872798-62872817 | Msa0463520:intron | 25.0% |
| ! | TTGTGCAACAATGAAATAAA+AGG | - | chr3_3:62873037-62873056 | None:intergenic | 25.0% |
| !! | ATAACTTGCACAAAAAAGAA+AGG | - | chr3_3:62873088-62873107 | None:intergenic | 25.0% |
| ! | AATTCAAGGAAAGGAAATAA+AGG | - | chr3_3:62873217-62873236 | None:intergenic | 25.0% |
| ! | AAAAAATGTGACCTCAAATT+AGG | + | chr3_3:62873253-62873272 | Msa0463520:intron | 25.0% |
| ! | AAAAATGTGACCTCAAATTA+GGG | + | chr3_3:62873254-62873273 | Msa0463520:intron | 25.0% |
| ! | GAAGAAACAACAAAAAAATG+CGG | - | chr3_3:62873414-62873433 | None:intergenic | 25.0% |
| !! | GAAGTTTTTATCAAGCTATT+CGG | - | chr3_3:62873626-62873645 | None:intergenic | 25.0% |
| !! | TCTGATTGATTTGTGTTTGA+TGG | + | chr3_3:62870398-62870417 | Msa0463520:intron | 30.0% |
| ! | AAACTTGCGATTTTTCTCTT+TGG | - | chr3_3:62870485-62870504 | None:intergenic | 30.0% |
| ! | TGAAACGCTTATCTTTTTGT+GGG | - | chr3_3:62870549-62870568 | None:intergenic | 30.0% |
| TTACGCTACATAGATATATC+TGG | + | chr3_3:62870845-62870864 | Msa0463520:intron | 30.0% | |
| ! | TTCCACTATCCTTTTGTTAA+GGG | + | chr3_3:62870882-62870901 | Msa0463520:intron | 30.0% |
| AAATTGCATCCCTTAACAAA+AGG | - | chr3_3:62870894-62870913 | None:intergenic | 30.0% | |
| TTGCAACATTCAATAAAGAC+GGG | - | chr3_3:62871007-62871026 | None:intergenic | 30.0% | |
| CTTGCAACATTCAATAAAGA+CGG | - | chr3_3:62871008-62871027 | None:intergenic | 30.0% | |
| TCTTTATTGAATGTTGCAAG+AGG | + | chr3_3:62871008-62871027 | Msa0463520:intron | 30.0% | |
| !!! | GTTGGTGTTTTTGTTTTTGT+TGG | - | chr3_3:62871331-62871350 | None:intergenic | 30.0% |
| AAAAACCCAATTCAACAGAA+GGG | - | chr3_3:62871465-62871484 | None:intergenic | 30.0% | |
| CATAACAAAGGAAAATCAGA+TGG | - | chr3_3:62871536-62871555 | None:intergenic | 30.0% | |
| !!! | GAGTTTTTTTCCGTACTTAA+AGG | + | chr3_3:62871593-62871612 | Msa0463520:intron | 30.0% |
| AAACAAACACCCTTTAAGTA+CGG | - | chr3_3:62871606-62871625 | None:intergenic | 30.0% | |
| !!! | ACTTAAAGGGTGTTTGTTTT+TGG | + | chr3_3:62871607-62871626 | Msa0463520:intron | 30.0% |
| TTGTTCTCTTCTTGAAGATT+CGG | + | chr3_3:62871660-62871679 | Msa0463520:intron | 30.0% | |
| ! | ACATTCAGATCCTTTTGTAA+AGG | - | chr3_3:62871741-62871760 | None:intergenic | 30.0% |
| ! | AATGTTTTCAGAAAAACGGT+GGG | + | chr3_3:62871756-62871775 | Msa0463520:intron | 30.0% |
| AAAAAAAAACTCAGCATCTG+TGG | - | chr3_3:62871826-62871845 | None:intergenic | 30.0% | |
| ATGAGATGGAATTAGTAGTA+TGG | - | chr3_3:62871855-62871874 | None:intergenic | 30.0% | |
| TAATTGCTTGTCTAGGAATT+TGG | - | chr3_3:62871901-62871920 | None:intergenic | 30.0% | |
| TAGTCATTAATTGCTTGTCT+AGG | - | chr3_3:62871908-62871927 | None:intergenic | 30.0% | |
| ATATTGTACAAATTCAGGAG+TGG | - | chr3_3:62871975-62871994 | None:intergenic | 30.0% | |
| TGAACAGTGATTACACAATT+AGG | - | chr3_3:62872068-62872087 | None:intergenic | 30.0% | |
| TAATTGTGTAATCACTGTTC+AGG | + | chr3_3:62872067-62872086 | Msa0463520:intron | 30.0% | |
| AAAAGCTAAACACTCATTTC+CGG | - | chr3_3:62872527-62872546 | None:intergenic | 30.0% | |
| !! | AATGAATTGCCTTGTTTGAA+AGG | + | chr3_3:62872708-62872727 | Msa0463520:intron | 30.0% |
| AAATAAAGGAAACATGTGTG+CGG | - | chr3_3:62873203-62873222 | None:intergenic | 30.0% | |
| TATTACAGCAATTCAAGGAA+AGG | - | chr3_3:62873226-62873245 | None:intergenic | 30.0% | |
| ACAGATATTACAGCAATTCA+AGG | - | chr3_3:62873231-62873250 | None:intergenic | 30.0% | |
| !! | TGTTGTTTCTTCAATATCCT+AGG | + | chr3_3:62873422-62873441 | Msa0463520:intron | 30.0% |
| TTGTATCTGAAGAGTTCAAT+GGG | + | chr3_3:62873513-62873532 | Msa0463520:CDS | 30.0% | |
| ! | AAATCTTACCGTGTCTTTTA+AGG | + | chr3_3:62873537-62873556 | Msa0463520:CDS | 30.0% |
| ! | AATCTTACCGTGTCTTTTAA+GGG | + | chr3_3:62873538-62873557 | Msa0463520:CDS | 30.0% |
| ATAAGTTCCCTTAAAAGACA+CGG | - | chr3_3:62873548-62873567 | None:intergenic | 30.0% | |
| TATTCGGACAAATGTATTGA+AGG | - | chr3_3:62873610-62873629 | None:intergenic | 30.0% | |
| ! | TCATCTTGTTACAATTTTGC+TGG | + | chr3_3:62873644-62873663 | Msa0463520:three_prime_UTR | 30.0% |
| ! | TTGGTTTACGAACCTCATTT+TGG | - | chr3_3:62870280-62870299 | None:intergenic | 35.0% |
| TTGTAGTAAGCTTCAAAGTG+AGG | + | chr3_3:62870423-62870442 | Msa0463520:intron | 35.0% | |
| GAGACCATTGAACTTCAAAT+TGG | + | chr3_3:62870508-62870527 | Msa0463520:CDS | 35.0% | |
| ! | GAGACCAATTTGAAGTTCAA+TGG | - | chr3_3:62870515-62870534 | None:intergenic | 35.0% |
| ! | CTGAAACGCTTATCTTTTTG+TGG | - | chr3_3:62870550-62870569 | None:intergenic | 35.0% |
| CAAAAAGATAAGCGTTTCAG+TGG | + | chr3_3:62870550-62870569 | Msa0463520:CDS | 35.0% | |
| AGCATACAAAGCTTCATCTT+AGG | - | chr3_3:62870604-62870623 | None:intergenic | 35.0% | |
| ! | AAGATGAAGCTTTGTATGCT+CGG | + | chr3_3:62870604-62870623 | Msa0463520:CDS | 35.0% |
| ! | CTTCCACTATCCTTTTGTTA+AGG | + | chr3_3:62870881-62870900 | Msa0463520:intron | 35.0% |
| ATCCCTTAACAAAAGGATAG+TGG | - | chr3_3:62870887-62870906 | None:intergenic | 35.0% | |
| !! | TAGCACCACCGATTTATATT+AGG | - | chr3_3:62871133-62871152 | None:intergenic | 35.0% |
| GTTTGTGATTTAGAGGAAAG+TGG | - | chr3_3:62871304-62871323 | None:intergenic | 35.0% | |
| !! | TGGTTTGGTTTGTGATTTAG+AGG | - | chr3_3:62871311-62871330 | None:intergenic | 35.0% |
| ACCAAACCCTTAGATGAAAA+GGG | - | chr3_3:62871385-62871404 | None:intergenic | 35.0% | |
| AACCAAACCCTTAGATGAAA+AGG | - | chr3_3:62871386-62871405 | None:intergenic | 35.0% | |
| !! | TTCATCTAAGGGTTTGGTTT+TGG | + | chr3_3:62871387-62871406 | Msa0463520:intron | 35.0% |
| GAAAAACCCAATTCAACAGA+AGG | - | chr3_3:62871466-62871485 | None:intergenic | 35.0% | |
| ! | GAATGTTTTCAGAAAAACGG+TGG | + | chr3_3:62871755-62871774 | Msa0463520:intron | 35.0% |
| !! | ACGGTGGGTTTGTTATAATT+AGG | + | chr3_3:62871771-62871790 | Msa0463520:intron | 35.0% |
| !! | GGTTTGTTATAATTAGGCAG+CGG | + | chr3_3:62871777-62871796 | Msa0463520:intron | 35.0% |
| !! | GGAAAGTGTTGTCATTATGT+AGG | + | chr3_3:62872088-62872107 | Msa0463520:intron | 35.0% |
| GACAAATAAGTTACGACAGT+AGG | + | chr3_3:62872197-62872216 | Msa0463520:intron | 35.0% | |
| ATGACTAGGCAAAAACTAGA+AGG | - | chr3_3:62872270-62872289 | None:intergenic | 35.0% | |
| AATCTTTCACTCCAATTTGC+AGG | + | chr3_3:62872298-62872317 | Msa0463520:intron | 35.0% | |
| ! | GAAGATAGGTTTGGAATCAA+TGG | + | chr3_3:62872325-62872344 | Msa0463520:CDS | 35.0% |
| ! | TAAGAAAGCATGGTACTTCT+TGG | - | chr3_3:62872405-62872424 | None:intergenic | 35.0% |
| ! | TAAACAAATTCCCCGTCTTT+TGG | + | chr3_3:62872442-62872461 | Msa0463520:CDS | 35.0% |
| ! | AAACAAATTCCCCGTCTTTT+GGG | + | chr3_3:62872443-62872462 | Msa0463520:CDS | 35.0% |
| GGTGAAATTTCAGCTAAAGA+AGG | + | chr3_3:62872886-62872905 | Msa0463520:CDS | 35.0% | |
| !!! | TCTTTTTCAACAAGGAGACA+AGG | - | chr3_3:62872994-62873013 | None:intergenic | 35.0% |
| TCTCCTTGTTGAAAAAGAAC+TGG | + | chr3_3:62872996-62873015 | Msa0463520:CDS | 35.0% | |
| ATGATTTCTTTGATGCCCTT+CGG | + | chr3_3:62873116-62873135 | Msa0463520:intron | 35.0% | |
| AACCACTTATCCCTAATTTG+AGG | - | chr3_3:62873267-62873286 | None:intergenic | 35.0% | |
| CAATCAGACTGAATATTCCT+AGG | - | chr3_3:62873442-62873461 | None:intergenic | 35.0% | |
| !! | CATAACCTACTGTTGATTTC+AGG | + | chr3_3:62873482-62873501 | Msa0463520:intron | 35.0% |
| CTTGTATCTGAAGAGTTCAA+TGG | + | chr3_3:62873512-62873531 | Msa0463520:CDS | 35.0% | |
| GCTACTCAACTCTTTATGAT+TGG | + | chr3_3:62873732-62873751 | Msa0463520:three_prime_UTR | 35.0% | |
| !!! | CCTCATTTTGGTTGAATCTG+TGG | - | chr3_3:62870268-62870287 | None:intergenic | 40.0% |
| CCACAGATTCAACCAAAATG+AGG | + | chr3_3:62870265-62870284 | Msa0463520:CDS | 40.0% | |
| AGAAGCAATCTCAGGAATCA+TGG | + | chr3_3:62870453-62870472 | Msa0463520:CDS | 40.0% | |
| AAAGCTTCATCTTAGGACGA+GGG | - | chr3_3:62870597-62870616 | None:intergenic | 40.0% | |
| ATATACCTCTTCGACGTGTT+GGG | - | chr3_3:62870635-62870654 | None:intergenic | 40.0% | |
| TATATACCTCTTCGACGTGT+TGG | - | chr3_3:62870636-62870655 | None:intergenic | 40.0% | |
| !! | ACAAAAGGATAGTGGAAGCA+TGG | - | chr3_3:62870879-62870898 | None:intergenic | 40.0% |
| TCAAGATCTGAGCTTCTTGT+TGG | - | chr3_3:62871349-62871368 | None:intergenic | 40.0% | |
| ACAAGAAGCTCAGATCTTGA+AGG | + | chr3_3:62871349-62871368 | Msa0463520:intron | 40.0% | |
| TAACGTCCCTTCTGTTGAAT+TGG | + | chr3_3:62871456-62871475 | Msa0463520:intron | 40.0% | |
| AACGTCCCTTCTGTTGAATT+GGG | + | chr3_3:62871457-62871476 | Msa0463520:intron | 40.0% | |
| ! | GCACTGATCCAATTTCTGAT+GGG | + | chr3_3:62871629-62871648 | Msa0463520:intron | 40.0% |
| CACTGATCCAATTTCTGATG+GGG | + | chr3_3:62871630-62871649 | Msa0463520:intron | 40.0% | |
| TGTGTTTCCCCATCAGAAAT+TGG | - | chr3_3:62871640-62871659 | None:intergenic | 40.0% | |
| ATCTGTGGATTCCATCTCTA+CGG | - | chr3_3:62871811-62871830 | None:intergenic | 40.0% | |
| TTATGTAGGTTCAACAACGC+TGG | + | chr3_3:62872102-62872121 | Msa0463520:intron | 40.0% | |
| TATCTTCTCTGCCTGCAAAT+TGG | - | chr3_3:62872312-62872331 | None:intergenic | 40.0% | |
| AATTTGCAGGCAGAGAAGAT+AGG | + | chr3_3:62872311-62872330 | Msa0463520:intron | 40.0% | |
| GCATGTGTTTCTCTTGGTTT+AGG | + | chr3_3:62872486-62872505 | Msa0463520:intron | 40.0% | |
| TCTCACCAAGAATCTCTTGA+GGG | + | chr3_3:62872839-62872858 | Msa0463520:CDS | 40.0% | |
| !!! | CTGCCAGTTCTTTTTCAACA+AGG | - | chr3_3:62873002-62873021 | None:intergenic | 40.0% |
| GACCTCAAATTAGGGATAAG+TGG | + | chr3_3:62873262-62873281 | Msa0463520:intron | 40.0% | |
| !! | CCTACTGTTGATTTCAGGTT+CGG | + | chr3_3:62873487-62873506 | Msa0463520:intron | 40.0% |
| GCTTCTGCTACAGAGCAAAA+TGG | - | chr3_3:62870246-62870265 | None:intergenic | 45.0% | |
| AGGGATATGAGGCAACTTGA+CGG | - | chr3_3:62870578-62870597 | None:intergenic | 45.0% | |
| ATCTTAGGACGAGGGATATG+AGG | - | chr3_3:62870589-62870608 | None:intergenic | 45.0% | |
| CAAAGCTTCATCTTAGGACG+AGG | - | chr3_3:62870598-62870617 | None:intergenic | 45.0% | |
| GGCAGTGATTAGAATGAGAG+AGG | + | chr3_3:62871234-62871253 | Msa0463520:intron | 45.0% | |
| CTTAGATGAAAAGGGCTTGG+CGG | - | chr3_3:62871377-62871396 | None:intergenic | 45.0% | |
| ! | GCCAAGCCCTTTTCATCTAA+GGG | + | chr3_3:62871376-62871395 | Msa0463520:intron | 45.0% |
| ACCCTTAGATGAAAAGGGCT+TGG | - | chr3_3:62871380-62871399 | None:intergenic | 45.0% | |
| ! | GCCCTTTTCATCTAAGGGTT+TGG | + | chr3_3:62871381-62871400 | Msa0463520:intron | 45.0% |
| AGGAAAATCAGATGGGAGCA+GGG | - | chr3_3:62871528-62871547 | None:intergenic | 45.0% | |
| AAGGAAAATCAGATGGGAGC+AGG | - | chr3_3:62871529-62871548 | None:intergenic | 45.0% | |
| !! | GGCACTGATCCAATTTCTGA+TGG | + | chr3_3:62871628-62871647 | Msa0463520:intron | 45.0% |
| CCTCAGAAGCTAAGAAAGCA+TGG | - | chr3_3:62872415-62872434 | None:intergenic | 45.0% | |
| CCATGCTTTCTTAGCTTCTG+AGG | + | chr3_3:62872412-62872431 | Msa0463520:CDS | 45.0% | |
| CTTGGTGAGAGACAAGTGTT+GGG | - | chr3_3:62872829-62872848 | None:intergenic | 45.0% | |
| TCTTGGTGAGAGACAAGTGT+TGG | - | chr3_3:62872830-62872849 | None:intergenic | 45.0% | |
| CTCTCACCAAGAATCTCTTG+AGG | + | chr3_3:62872838-62872857 | Msa0463520:CDS | 45.0% | |
| CCTTTCCCTCAAGAGATTCT+TGG | - | chr3_3:62872847-62872866 | None:intergenic | 45.0% | |
| CCAAGAATCTCTTGAGGGAA+AGG | + | chr3_3:62872844-62872863 | Msa0463520:CDS | 45.0% | |
| GGGAAAGGTCAATGAGACAA+AGG | + | chr3_3:62872859-62872878 | Msa0463520:CDS | 45.0% | |
| GGTCAATGAGACAAAGGCTA+TGG | + | chr3_3:62872865-62872884 | Msa0463520:CDS | 45.0% | |
| !! | CTAAAGAAGGTGCTCTGCAT+GGG | + | chr3_3:62872899-62872918 | Msa0463520:CDS | 45.0% |
| CATGCTAGCATTTCACCGAA+GGG | - | chr3_3:62873134-62873153 | None:intergenic | 45.0% | |
| TCATGCTAGCATTTCACCGA+AGG | - | chr3_3:62873135-62873154 | None:intergenic | 45.0% | |
| ! | CGGATGAAAGAAAGCATGTC+AGG | - | chr3_3:62873183-62873202 | None:intergenic | 45.0% |
| CCGAACCTGAAATCAACAGT+AGG | - | chr3_3:62873490-62873509 | None:intergenic | 45.0% | |
| GCAGTGAGAGAAGCAATCTC+AGG | + | chr3_3:62870445-62870464 | Msa0463520:CDS | 50.0% | |
| ! | TTTTGCTGAGCTGAGAGAGC+AGG | + | chr3_3:62871212-62871231 | Msa0463520:intron | 50.0% |
| TTTGCTGAGCTGAGAGAGCA+GGG | + | chr3_3:62871213-62871232 | Msa0463520:intron | 50.0% | |
| ! | CGCCAAGCCCTTTTCATCTA+AGG | + | chr3_3:62871375-62871394 | Msa0463520:intron | 50.0% |
| GCAGGCAGAGAAGATAGGTT+TGG | + | chr3_3:62872316-62872335 | Msa0463520:intron | 50.0% | |
| TGAGACCAGGACCCAAAAGA+CGG | - | chr3_3:62872457-62872476 | None:intergenic | 50.0% | |
| TTTGGGTCCTGGTCTCAACA+AGG | + | chr3_3:62872460-62872479 | Msa0463520:CDS | 50.0% | |
| AGGCAGGCATGTGTTTCTCT+TGG | + | chr3_3:62872480-62872499 | Msa0463520:intron | 50.0% | |
| !! | GCTAAAGAAGGTGCTCTGCA+TGG | + | chr3_3:62872898-62872917 | Msa0463520:CDS | 50.0% |
| AGCTGTGGGCAATGTTAGCA+TGG | + | chr3_3:62872925-62872944 | Msa0463520:CDS | 50.0% | |
| AGATGCCCAACACGTCGAAG+AGG | + | chr3_3:62870627-62870646 | Msa0463520:CDS | 55.0% | |
| AGAATGAGAGAGGCCTCGAG+TGG | + | chr3_3:62871244-62871263 | Msa0463520:intron | 55.0% | |
| GAATGAGAGAGGCCTCGAGT+GGG | + | chr3_3:62871245-62871264 | Msa0463520:intron | 55.0% | |
| GCATTGGGTATTCCCACTCG+AGG | - | chr3_3:62871260-62871279 | None:intergenic | 55.0% | |
| CGGCTAGACAACCGTAGAGA+TGG | + | chr3_3:62871797-62871816 | Msa0463520:intron | 55.0% | |
| !! | ATTCCCCGTCTTTTGGGTCC+TGG | + | chr3_3:62872449-62872468 | Msa0463520:CDS | 55.0% |
| AGACCAGGACCCAAAAGACG+GGG | - | chr3_3:62872455-62872474 | None:intergenic | 55.0% | |
| GAGACCAGGACCCAAAAGAC+GGG | - | chr3_3:62872456-62872475 | None:intergenic | 55.0% | |
| ! | ATGCCTGCCTTGTTGAGACC+AGG | - | chr3_3:62872470-62872489 | None:intergenic | 55.0% |
| CTCTGCATGGGAGTAGCTGT+GGG | + | chr3_3:62872911-62872930 | Msa0463520:CDS | 55.0% | |
| GGTCCTGGTCTCAACAAGGC+AGG | + | chr3_3:62872464-62872483 | Msa0463520:CDS | 60.0% | |
| GCTCTGCATGGGAGTAGCTG+TGG | + | chr3_3:62872910-62872929 | Msa0463520:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 62870222 | 62873803 | 62870222 | ID=Msa0463520;Name=Msa0463520 |
| chr3_3 | mRNA | 62870222 | 62873803 | 62870222 | ID=Msa0463520-mRNA-1;Parent=Msa0463520;Name=Msa0463520-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0|0.75|0.6|1|0.5|0.6|5|246|238 |
| chr3_3 | exon | 62870222 | 62870286 | 62870222 | ID=Msa0463520-mRNA-1:exon:13547;Parent=Msa0463520-mRNA-1 |
| chr3_3 | exon | 62870429 | 62870648 | 62870429 | ID=Msa0463520-mRNA-1:exon:13548;Parent=Msa0463520-mRNA-1 |
| chr3_3 | exon | 62872320 | 62872491 | 62872320 | ID=Msa0463520-mRNA-1:exon:13549;Parent=Msa0463520-mRNA-1 |
| chr3_3 | exon | 62872819 | 62873024 | 62872819 | ID=Msa0463520-mRNA-1:exon:13550;Parent=Msa0463520-mRNA-1 |
| chr3_3 | exon | 62873504 | 62873803 | 62873504 | ID=Msa0463520-mRNA-1:exon:13551;Parent=Msa0463520-mRNA-1 |
| chr3_3 | CDS | 62870222 | 62870286 | 62870222 | ID=Msa0463520-mRNA-1:cds;Parent=Msa0463520-mRNA-1 |
| chr3_3 | CDS | 62870429 | 62870648 | 62870429 | ID=Msa0463520-mRNA-1:cds;Parent=Msa0463520-mRNA-1 |
| chr3_3 | CDS | 62872320 | 62872491 | 62872320 | ID=Msa0463520-mRNA-1:cds;Parent=Msa0463520-mRNA-1 |
| chr3_3 | CDS | 62872819 | 62873024 | 62872819 | ID=Msa0463520-mRNA-1:cds;Parent=Msa0463520-mRNA-1 |
| chr3_3 | CDS | 62873504 | 62873557 | 62873504 | ID=Msa0463520-mRNA-1:cds;Parent=Msa0463520-mRNA-1 |
| chr3_3 | three_prime_UTR | 62873558 | 62873803 | 62873558 | ID=Msa0463520-mRNA-1:three_prime_utr;Parent=Msa0463520-mRNA-1 |
| Gene Sequence |
| Protein sequence |
