AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0768960

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0768960 MtrunA17_Chr5g0420051 96.110 437 17 0 1 437 1 437 0.0 851
Msa0768960 MtrunA17_Chr2g0308321 40.217 368 190 11 1 354 1 352 7.27e-62 209
Msa0768960 MtrunA17_Chr4g0061651 49.333 225 82 8 111 322 56 261 3.59e-52 182
Msa0768960 MtrunA17_Chr3g0132091 46.753 154 77 2 131 279 18 171 1.25e-37 140
Msa0768960 MtrunA17_Chr3g0122411 49.265 136 66 1 121 256 108 240 2.39e-37 141
Msa0768960 MtrunA17_Chr8g0386271 47.712 153 75 3 131 279 45 196 4.96e-36 136
Msa0768960 MtrunA17_Chr4g0046991 60.638 94 34 1 166 259 61 151 5.61e-35 127
Msa0768960 MtrunA17_Chr7g0231911 73.077 78 21 0 181 258 149 226 1.12e-34 131
Msa0768960 MtrunA17_Chr2g0282521 66.667 84 28 0 176 259 59 142 7.65e-34 124
Msa0768960 MtrunA17_Chr8g0334671 61.458 96 33 1 165 256 167 262 3.28e-33 127
Msa0768960 MtrunA17_Chr7g0224821 57.000 100 43 0 180 279 76 175 4.66e-33 128
Msa0768960 MtrunA17_Chr7g0258471 70.130 77 23 0 179 255 140 216 5.23e-33 129
Msa0768960 MtrunA17_Chr2g0302791 62.766 94 34 1 166 258 123 216 1.28e-32 131
Msa0768960 MtrunA17_Chr1g0194121 61.798 89 34 0 166 254 132 220 3.39e-31 127
Msa0768960 MtrunA17_Chr1g0162871 63.441 93 33 1 167 258 89 181 7.44e-31 125
Msa0768960 MtrunA17_Chr8g0360361 67.105 76 25 0 179 254 63 138 1.00e-30 116
Msa0768960 MtrunA17_Chr7g0270541 67.949 78 25 0 181 258 145 222 1.95e-30 124
Msa0768960 MtrunA17_Chr8g0377421 42.063 126 72 1 130 254 80 205 6.74e-28 112
Msa0768960 MtrunA17_Chr8g0377401 59.211 76 31 0 178 253 159 234 3.54e-26 106
Msa0768960 MtrunA17_Chr2g0286661 51.282 78 38 0 181 258 103 180 5.86e-22 99.0
Msa0768960 MtrunA17_Chr2g0317041 64.000 50 18 0 178 227 96 145 7.42e-17 77.4
Msa0768960 MtrunA17_Chr1g0175031 65.306 49 17 0 179 227 72 120 4.47e-16 74.7
Msa0768960 MtrunA17_Chr8g0377431 34.375 128 78 2 107 234 83 204 8.12e-15 73.2
Msa0768960 MtrunA17_Chr1g0175021 61.224 49 18 1 228 275 8 56 4.34e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0768960 AT1G69170.1 34.707 461 188 16 1 421 1 388 1.16e-61 206
Msa0768960 AT1G27370.6 50.400 125 61 1 133 256 127 251 8.87e-35 132
Msa0768960 AT5G50570.1 57.426 101 42 1 179 279 99 198 8.88e-35 133
Msa0768960 AT5G50570.2 57.426 101 42 1 179 279 99 198 8.88e-35 133
Msa0768960 AT5G50670.1 57.426 101 42 1 179 279 99 198 8.88e-35 133
Msa0768960 AT5G50670.2 57.426 101 42 1 179 279 99 198 8.88e-35 133
Msa0768960 AT2G42200.1 74.359 78 20 0 179 256 72 149 1.51e-34 132
Msa0768960 AT1G27370.1 50.400 125 61 1 133 256 127 251 3.35e-34 132
Msa0768960 AT1G27370.5 50.400 125 61 1 133 256 127 251 3.35e-34 132
Msa0768960 AT1G27370.3 50.400 125 61 1 133 256 127 251 3.35e-34 132
Msa0768960 AT1G27370.2 50.400 125 61 1 133 256 127 251 3.35e-34 132
Msa0768960 AT1G27370.4 50.400 125 61 1 133 256 127 251 3.35e-34 132
Msa0768960 AT1G27370.7 50.400 125 61 1 133 256 127 251 3.35e-34 132
Msa0768960 AT1G76580.2 60.000 105 41 1 179 283 112 215 2.54e-33 133
Msa0768960 AT1G76580.3 60.000 105 41 1 179 283 112 215 2.68e-33 133
Msa0768960 AT5G43270.3 70.130 77 23 0 179 255 167 243 4.14e-33 129
Msa0768960 AT5G43270.1 70.130 77 23 0 179 255 167 243 4.14e-33 129
Msa0768960 AT5G43270.2 70.130 77 23 0 179 255 167 243 4.14e-33 129
Msa0768960 AT1G27360.2 38.636 176 101 2 133 308 127 295 4.65e-33 129
Msa0768960 AT1G27360.1 38.636 176 101 2 133 308 127 295 4.65e-33 129
Msa0768960 AT1G27360.3 38.636 176 101 2 133 308 127 295 4.65e-33 129
Msa0768960 AT1G27360.4 38.636 176 101 2 133 308 127 295 4.65e-33 129
Msa0768960 AT1G76580.1 60.000 105 41 1 179 283 112 215 7.31e-33 132
Msa0768960 AT3G57920.1 63.265 98 34 1 181 276 59 156 1.23e-32 127
Msa0768960 AT2G33810.1 65.823 79 27 0 180 258 53 131 2.10e-32 120
Msa0768960 AT1G20980.1 46.043 139 53 2 167 305 106 222 2.12e-32 130
Msa0768960 AT3G60030.1 37.900 219 126 4 160 378 106 314 3.34e-32 130
Msa0768960 AT1G02065.1 52.174 115 51 1 144 254 147 261 5.12e-32 124
Msa0768960 AT2G47070.1 72.000 75 21 0 180 254 105 179 5.52e-31 126
Msa0768960 AT1G53160.2 65.333 75 26 0 180 254 53 127 2.02e-29 113
Msa0768960 AT1G53160.1 65.333 75 26 0 180 254 53 127 2.02e-29 113
Msa0768960 AT1G53160.3 65.333 75 26 0 180 254 53 127 2.52e-29 113
Msa0768960 AT3G15270.1 64.000 75 27 0 180 254 62 136 3.05e-29 113
Msa0768960 AT5G18830.3 36.806 144 73 3 143 268 84 227 1.47e-20 95.1
Msa0768960 AT5G18830.2 36.806 144 73 3 143 268 84 227 1.69e-20 94.7
Msa0768960 AT5G18830.1 36.806 144 73 3 143 268 84 227 1.79e-20 94.7
Msa0768960 AT2G47070.2 74.000 50 13 0 205 254 1 50 2.15e-18 88.2
Msa0768960 AT1G02065.2 46.154 91 41 2 144 228 147 235 8.17e-17 80.1

Find 101 sgRNAs with CRISPR-Local

Find 290 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATAATTAATTCCAGTGATTT+TGG 0.154272 5_2:+36119091 None:intergenic
GCTCCTGTATGCCAAGTTTA+TGG 0.217464 5_2:-36122845 Msa0768960:CDS
GCCACCACAATTCATCTTTC+AGG 0.220055 5_2:-36123977 Msa0768960:intron
AACAAATAGCTTCTCTCTTC+AGG 0.222642 5_2:+36123355 None:intergenic
TCTAGTTGAGGGCTGCAAAT+TGG 0.232543 5_2:+36119674 None:intergenic
CACTTCTAGCTTACCTGCTT+TGG 0.255243 5_2:-36122867 Msa0768960:CDS
ATGAGATATGGTCTTATAAA+TGG 0.281304 5_2:+36118963 None:intergenic
GATTTCCTATGGAGGCTTCT+AGG 0.288922 5_2:-36123183 Msa0768960:CDS
TGGCAACTTGTGAGTGGTTT+TGG 0.290794 5_2:+36123996 None:intergenic
TAGAGAGGTAGTTAAAAGTA+TGG 0.306378 5_2:-36123221 Msa0768960:CDS
TCCATGTGGGATAAACTCTA+AGG 0.320657 5_2:-36119438 Msa0768960:CDS
TTCAATTAAATTTGTAGTAA+TGG 0.320830 5_2:-36123395 Msa0768960:exon
ACATCAACGTAACATGCTTT+TGG 0.328791 5_2:-36124147 Msa0768960:five_prime_UTR
GAAGCAAAGAAATTCTGTTT+TGG 0.338535 5_2:-36119345 Msa0768960:CDS
CTGATGGATTTCCTGCTGTT+TGG 0.343509 5_2:+36119573 None:intergenic
TTTGCTTCTCCACCCTTTGA+AGG 0.344895 5_2:+36119360 None:intergenic
TTAACTTGCCTATACAATAT+CGG 0.349737 5_2:-36119007 Msa0768960:three_prime_UTR
GACATGTTAATGGCTCAATA+TGG 0.359377 5_2:-36119185 Msa0768960:three_prime_UTR
CTAGTTGAGGGCTGCAAATT+GGG 0.359645 5_2:+36119675 None:intergenic
TTCTAGGACTGTTCGTGGTT+CGG 0.369527 5_2:-36123167 Msa0768960:CDS
AATCAGTTACATGAAACATT+AGG 0.379043 5_2:+36119268 None:intergenic
TACGTGGATAGACATGTTAA+TGG 0.380024 5_2:-36119195 Msa0768960:three_prime_UTR
AAGTATGGAATTTGTGGACT+TGG 0.383614 5_2:-36123206 Msa0768960:CDS
AATTTGTAGTAATGGAATCT+TGG 0.388699 5_2:-36123387 Msa0768960:exon
TTTACAAGCCGATATTGTAT+AGG 0.400959 5_2:+36118999 None:intergenic
AATTGTCTTCTAACCTTCAA+AGG 0.400965 5_2:-36119373 Msa0768960:CDS
TCATTGATTGATTTGAAGCT+AGG 0.417700 5_2:-36122992 Msa0768960:CDS
TTTAGAACAATTCAACCATT+AGG 0.420409 5_2:+36119042 None:intergenic
GACGATAACTTTAGCTGTCT+TGG 0.422044 5_2:+36122757 None:intergenic
TTAGTAGATTGTCAAGGTGT+GGG 0.426117 5_2:-36122965 Msa0768960:CDS
TTCTTGAATTAGGTTCCATC+TGG 0.429111 5_2:-36122166 Msa0768960:intron
GCTAGAAGTGCGGGATCTCT+TGG 0.433355 5_2:+36122880 None:intergenic
AAAAGTGCGATATGGCCTAA+TGG 0.437976 5_2:-36119057 Msa0768960:three_prime_UTR
GCTAACACGCTTTGATGAAT+CGG 0.443304 5_2:+36122902 None:intergenic
TGTGGACTTGGGATTTCCTA+TGG 0.444151 5_2:-36123194 Msa0768960:CDS
TAGAAAACCCTTAGTTGAAT+GGG 0.448095 5_2:-36123290 Msa0768960:CDS
AGTTAAAAGTATGGAATTTG+TGG 0.448427 5_2:-36123212 Msa0768960:CDS
GCTGTTTCTCAAACGTGTAA+AGG 0.456116 5_2:-36119301 Msa0768960:exon
CAACCATAAACTTGGCATAC+AGG 0.459443 5_2:+36122842 None:intergenic
TCAAAGTGGACATATCAAAC+TGG 0.462398 5_2:-36119705 Msa0768960:CDS
CCATGTTACAACCATAAACT+TGG 0.470816 5_2:+36122834 None:intergenic
GTAGAAAACCCTTAGTTGAA+TGG 0.471526 5_2:-36123291 Msa0768960:CDS
GCTCAATATGGATCAATGAT+AGG 0.473771 5_2:-36119173 Msa0768960:three_prime_UTR
AGTATGGAATTTGTGGACTT+GGG 0.478417 5_2:-36123205 Msa0768960:CDS
TCAAAGGTGTTTCAGAAACT+TGG 0.479177 5_2:+36119501 None:intergenic
ACAAATAGCTTCTCTCTTCA+GGG 0.479898 5_2:+36123356 None:intergenic
AAAAGCAATAACATGGATAG+AGG 0.481057 5_2:+36123090 None:intergenic
CTTTGTAACACCAAAATCAC+TGG 0.487237 5_2:-36119101 Msa0768960:three_prime_UTR
ATTGTCTTCTAACCTTCAAA+GGG 0.489133 5_2:-36119372 Msa0768960:CDS
TATCTTGAGTGCGGATGTCC+CGG 0.493515 5_2:+36119531 None:intergenic
CCTCGAAAGATTACCACAAA+AGG 0.498780 5_2:-36122802 Msa0768960:CDS
TTTCCTGCTGTTTGGTGCGA+CGG 0.501630 5_2:+36119581 None:intergenic
TTTCATGTAACTGATTCAAT+TGG 0.501729 5_2:-36119261 Msa0768960:three_prime_UTR
ACAGCTAAAGTTATCGTCAA+TGG 0.504384 5_2:-36122752 Msa0768960:CDS
ACTTTGAAATATGTCTTGAA+AGG 0.507641 5_2:+36119763 None:intergenic
CATTGATTGATTTGAAGCTA+GGG 0.508340 5_2:-36122991 Msa0768960:CDS
AAAATGAGGGATATCAATGT+TGG 0.513083 5_2:-36119146 Msa0768960:three_prime_UTR
GAGGCTTCTAGGACTGTTCG+TGG 0.514115 5_2:-36123172 Msa0768960:CDS
TTCGCAGAGCTTGTCATCAA+AGG 0.516063 5_2:+36119485 None:intergenic
AGCAGGTAAGCTAGAAGTGC+GGG 0.516979 5_2:+36122871 None:intergenic
ATGGTAAGCGCAGTTGTCGC+AGG 0.518129 5_2:-36122128 Msa0768960:CDS
TAGCGGGCACTTCTAGTTGA+GGG 0.519257 5_2:+36119663 None:intergenic
AATTCGTGTCCATGTGTAGC+GGG 0.520740 5_2:+36119647 None:intergenic
TCCTTAGAGTTTATCCCACA+TGG 0.525879 5_2:+36119437 None:intergenic
GACATCCGCACTCAAGATAG+AGG 0.528344 5_2:-36119527 Msa0768960:CDS
AATCGAACTGAGGTTTCCTT+CGG 0.529739 5_2:+36122082 None:intergenic
AAAGTACTGGCAGTAGCTGA+TGG 0.532169 5_2:+36119557 None:intergenic
TCAGACATCTAGCTGTGAGC+TGG 0.532209 5_2:-36123143 Msa0768960:CDS
AGTTGTCGCAGGCGTCTAGC+TGG 0.532617 5_2:-36122117 Msa0768960:CDS
TAGTAGATTGTCAAGGTGTG+GGG 0.537134 5_2:-36122964 Msa0768960:CDS
AAGATTCTTCAGTCATATCA+AGG 0.537497 5_2:-36122039 Msa0768960:intron
TGGACATATCAAACTGGAAG+AGG 0.540218 5_2:-36119699 Msa0768960:CDS
CCAAGTTTATGGTTGTAACA+TGG 0.549560 5_2:-36122834 Msa0768960:CDS
GAATAGTTGTAATGTTGAAG+TGG 0.550487 5_2:+36124083 None:intergenic
CTAGAAGTGCCCGCTACACA+TGG 0.550524 5_2:-36119656 Msa0768960:CDS
GTAGCGGGCACTTCTAGTTG+AGG 0.554616 5_2:+36119662 None:intergenic
AATCCGTCGCACCAAACAGC+AGG 0.562264 5_2:-36119584 Msa0768960:CDS
ATTAGTAGATTGTCAAGGTG+TGG 0.566271 5_2:-36122966 Msa0768960:CDS
TTTCAAGACATATTTCAAAG+TGG 0.566498 5_2:-36119761 Msa0768960:CDS
CTGGACACAATGAGCGCCGA+AGG 0.574137 5_2:-36122098 Msa0768960:CDS
TGGCATACAGGAGCCAAAGC+AGG 0.579602 5_2:+36122854 None:intergenic
CATGATCAAATCTCTCAAAG+TGG 0.581788 5_2:-36119719 Msa0768960:CDS
TCATGTAACTTTGAACGAGA+CGG 0.583364 5_2:-36123256 Msa0768960:CDS
CTGACAGAAGAGAGAGAGCA+TGG 0.588418 5_2:+36119618 None:intergenic
GTCTTCTAACCTTCAAAGGG+TGG 0.588488 5_2:-36119369 Msa0768960:CDS
TTGTGGTGGCAACTTGTGAG+TGG 0.596955 5_2:+36123990 None:intergenic
CGTCGAACTCAGTTACCAGA+TGG 0.604322 5_2:+36122151 None:intergenic
GGACTTGGGATTTCCTATGG+AGG 0.614398 5_2:-36123191 Msa0768960:CDS
ACAGTCCTAGAAGCCTCCAT+AGG 0.615388 5_2:+36123178 None:intergenic
ATGAATCAAAAGCAATAACA+TGG 0.620760 5_2:+36123083 None:intergenic
CTAGTCATGTAATCGAACTG+AGG 0.637565 5_2:+36122072 None:intergenic
TCGTCAATGGTGTTGAACAG+AGG 0.637850 5_2:-36122739 Msa0768960:CDS
GAAATTATTAAATCTGAACA+TGG 0.656589 5_2:-36119416 Msa0768960:CDS
GGTCGCCTCTATCTTGAGTG+CGG 0.658611 5_2:+36119522 None:intergenic
TAATTCGTGTCCATGTGTAG+CGG 0.666143 5_2:+36119646 None:intergenic
GGGAGATTAGTAGATTGTCA+AGG 0.666785 5_2:-36122971 Msa0768960:CDS
CTGGTAACTGAGTTCGACGA+TGG 0.666961 5_2:-36122147 Msa0768960:CDS
GTAACCTGAAAGATGAATTG+TGG 0.668232 5_2:+36123973 None:intergenic
AAGCAGGTAAGCTAGAAGTG+CGG 0.678203 5_2:+36122870 None:intergenic
ACCTGAAAGATGAATTGTGG+TGG 0.698502 5_2:+36123976 None:intergenic
CAATTGAAACAGATCAACAG+TGG 0.725111 5_2:+36119391 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TGAATAAATGATTTAAATAA+TGG + chr5_2:36122470-36122489 None:intergenic 10.0%
!! AGCAAATAAAAATTTCAAAA+TGG + chr5_2:36119328-36119347 None:intergenic 15.0%
!!! ATTTTGAAATTTTTATTTGC+TGG - chr5_2:36119327-36119346 Msa0768960:CDS 15.0%
!!! TATTTCTTTTCAATTATGTT+AGG - chr5_2:36119664-36119683 Msa0768960:CDS 15.0%
!! TTCAATTAAATTTGTAGTAA+TGG - chr5_2:36119716-36119735 Msa0768960:CDS 15.0%
!!! AAATGTTATTTTAATTCCAA+AGG + chr5_2:36120433-36120452 None:intergenic 15.0%
!! TAATATCTTAGAATTGTTAA+TGG - chr5_2:36120848-36120867 Msa0768960:intron 15.0%
!!! TTTCAGTTTTTAATAAGATT+TGG - chr5_2:36121508-36121527 Msa0768960:intron 15.0%
!! TAATAGAAAAATATACCATA+TGG + chr5_2:36121851-36121870 None:intergenic 15.0%
!!! TATATTTTTCTATTAGCTTA+TGG - chr5_2:36121856-36121875 Msa0768960:intron 15.0%
!! TATTTCATACAAATTTAGTT+AGG + chr5_2:36122042-36122061 None:intergenic 15.0%
!! TCAATTACTATAAGAAATTT+GGG - chr5_2:36122127-36122146 Msa0768960:CDS 15.0%
!! ATAAATGATTTAAATAATGG+TGG + chr5_2:36122467-36122486 None:intergenic 15.0%
!! AGAAATAATAAGATTATAAC+AGG + chr5_2:36123233-36123252 None:intergenic 15.0%
!!! TGTATTTTTATGATATACTT+TGG - chr5_2:36123881-36123900 Msa0768960:intron 15.0%
!!! AAATCTCAACTTTTTCAAAA+GGG + chr5_2:36119389-36119408 None:intergenic 20.0%
!!! AAAATCTCAACTTTTTCAAA+AGG + chr5_2:36119390-36119409 None:intergenic 20.0%
!! TGTAGATTTATTTATCACAT+AGG - chr5_2:36119442-36119461 Msa0768960:CDS 20.0%
!!! GAACTTGTTTTATTTTGATA+TGG - chr5_2:36119470-36119489 Msa0768960:CDS 20.0%
!! AGATACAATTAATGAACATT+AGG + chr5_2:36119525-36119544 None:intergenic 20.0%
!!! TAAACTTTTGATTATAGCTA+AGG - chr5_2:36119631-36119650 Msa0768960:CDS 20.0%
!!! AAACTCTTAAATTCTTTTTC+TGG + chr5_2:36120583-36120602 None:intergenic 20.0%
!!! CGTATTATTTTACTTTCTTA+TGG - chr5_2:36120633-36120652 Msa0768960:intron 20.0%
!!! CTTATTTTTGTTCTTGAATT+AGG - chr5_2:36120935-36120954 Msa0768960:intron 20.0%
!!! GAAATATAATTCTAGTTGTT+AGG + chr5_2:36121276-36121295 None:intergenic 20.0%
!! TATAAAATTTATAACCCAAG+TGG - chr5_2:36121378-36121397 Msa0768960:intron 20.0%
!! ATAAAATTTATAACCCAAGT+GGG - chr5_2:36121379-36121398 Msa0768960:intron 20.0%
!!! TTTTATCAAAGTCAATATGA+AGG + chr5_2:36121467-36121486 None:intergenic 20.0%
!!! AACTCTATTATATTTTGAAG+TGG + chr5_2:36121573-36121592 None:intergenic 20.0%
!!! TCTGATTTTTAAATTACATG+TGG + chr5_2:36121651-36121670 None:intergenic 20.0%
!! CATGTAATTTAAAAATCAGA+AGG - chr5_2:36121651-36121670 Msa0768960:intron 20.0%
!! CATATTGAAAGAAAATTGAT+AGG - chr5_2:36121749-36121768 Msa0768960:intron 20.0%
!! TTGTATGAAATATCAATCAT+TGG - chr5_2:36122050-36122069 Msa0768960:CDS 20.0%
!! GTCAATTACTATAAGAAATT+TGG - chr5_2:36122126-36122145 Msa0768960:CDS 20.0%
!! TTAAACATTTCAAACAAAAG+AGG - chr5_2:36122247-36122266 Msa0768960:intron 20.0%
!!! AAACAATTACACTTGTTAAA+TGG + chr5_2:36122345-36122364 None:intergenic 20.0%
!! TTTCATCGAGTTTATTTATT+AGG + chr5_2:36122576-36122595 None:intergenic 20.0%
!! AAACTAATTTACATCTACAT+AGG + chr5_2:36122760-36122779 None:intergenic 20.0%
!! TTAAAATGCAGTTATAAAGT+GGG + chr5_2:36122828-36122847 None:intergenic 20.0%
!!! TTTAAAATGCAGTTATAAAG+TGG + chr5_2:36122829-36122848 None:intergenic 20.0%
!!! TATAACTGCATTTTAAAACT+AGG - chr5_2:36122832-36122851 Msa0768960:CDS 20.0%
!!! CTTAATTTGAAGTTTTAAAC+TGG - chr5_2:36122880-36122899 Msa0768960:CDS 20.0%
!!! TTCCAATTTTTTCATTGTTT+TGG + chr5_2:36122982-36123001 None:intergenic 20.0%
!! AAAACAATGAAAAAATTGGA+AGG - chr5_2:36122981-36123000 Msa0768960:CDS 20.0%
!!! AATTTTGCAGTTATTTTCAA+TGG + chr5_2:36123095-36123114 None:intergenic 20.0%
!!! GCAAAATTATGAATTTTCAT+TGG - chr5_2:36123107-36123126 Msa0768960:CDS 20.0%
!!! ATTTTCATTGGATAAGTTAA+AGG - chr5_2:36123119-36123138 Msa0768960:CDS 20.0%
!! GAAATTATTAAATCTGAACA+TGG - chr5_2:36123695-36123714 Msa0768960:intron 20.0%
!!! ATAATTAATTCCAGTGATTT+TGG + chr5_2:36124023-36124042 None:intergenic 20.0%
!!! TTTTTTTTAAAAGTGCGATA+TGG - chr5_2:36124046-36124065 Msa0768960:intron 20.0%
!! AGATTTCTTGTTTCAAATGT+TGG - chr5_2:36119250-36119269 Msa0768960:three_prime_UTR 25.0%
! AGATATCTTGTTCTTTAATC+TGG - chr5_2:36119281-36119300 Msa0768960:three_prime_UTR 25.0%
! GATATCTTGTTCTTTAATCT+GGG - chr5_2:36119282-36119301 Msa0768960:three_prime_UTR 25.0%
! TTTATTTATCACATAGGTGA+TGG - chr5_2:36119448-36119467 Msa0768960:CDS 25.0%
!! AATTTGTAGTAATGGAATCT+TGG - chr5_2:36119724-36119743 Msa0768960:CDS 25.0%
!!! CTATTTGTTTTCTGATGAAA+TGG - chr5_2:36119770-36119789 Msa0768960:CDS 25.0%
!! AGTTAAAAGTATGGAATTTG+TGG - chr5_2:36119899-36119918 Msa0768960:intron 25.0%
! ATGAATCAAAAGCAATAACA+TGG + chr5_2:36120031-36120050 None:intergenic 25.0%
!! CTTCTTTGATTTATTCGAAT+AGG - chr5_2:36120540-36120559 Msa0768960:intron 25.0%
! AGAAAGTAAAATAATACGAG+AGG + chr5_2:36120631-36120650 None:intergenic 25.0%
!! TACTTTCTTATGGTTTTCTT+AGG - chr5_2:36120643-36120662 Msa0768960:intron 25.0%
!! ACTTTCTTATGGTTTTCTTA+GGG - chr5_2:36120644-36120663 Msa0768960:intron 25.0%
! GAATTGTCAAATAAACTAGA+CGG + chr5_2:36120713-36120732 None:intergenic 25.0%
! TCATAGTCTAAATTCTAACA+TGG - chr5_2:36120825-36120844 Msa0768960:intron 25.0%
! ATAGATAAGACAGCAAAAAT+TGG - chr5_2:36121130-36121149 Msa0768960:intron 25.0%
! TTATGTCTGATAATTAGTTG+CGG - chr5_2:36121182-36121201 Msa0768960:intron 25.0%
!!! ACTTTTATAATGGATTTCGA+AGG + chr5_2:36121437-36121456 None:intergenic 25.0%
! TTGACTTTGATAAAAATCTG+TGG - chr5_2:36121472-36121491 Msa0768960:intron 25.0%
!!! ATAGAGTTGATAGATAGATT+AGG - chr5_2:36121585-36121604 Msa0768960:intron 25.0%
!! GATTTTTAAATTACATGTGG+TGG + chr5_2:36121648-36121667 None:intergenic 25.0%
! GTTTCTTAACCATATTAGTT+AGG - chr5_2:36121689-36121708 Msa0768960:intron 25.0%
! ACACAAAATCCTAACTAATA+TGG + chr5_2:36121701-36121720 None:intergenic 25.0%
!!! ATCTTATAATTTAGCCTTAG+AGG + chr5_2:36121964-36121983 None:intergenic 25.0%
!! TACTATAAGAAATTTGGGTT+AGG - chr5_2:36122132-36122151 Msa0768960:CDS 25.0%
!!! AAGGTTTTAATTTCAGTTCA+TGG + chr5_2:36122199-36122218 None:intergenic 25.0%
! ATGAACTGAAATTAAAACCT+TGG - chr5_2:36122198-36122217 Msa0768960:intron 25.0%
!!! ACTCCATCTTTTAATTTTTG+TGG - chr5_2:36122300-36122319 Msa0768960:intron 25.0%
!!! AAAAACTAGTCTTACAACAT+TGG + chr5_2:36122412-36122431 None:intergenic 25.0%
! CAATTCATGATTTCAATAGA+AGG - chr5_2:36122488-36122507 Msa0768960:intron 25.0%
! AAATTAAGTTAAAGAATCCC+TGG + chr5_2:36122868-36122887 None:intergenic 25.0%
!! CTTTTTAAACGTCAAAATTG+TGG - chr5_2:36122937-36122956 Msa0768960:CDS 25.0%
! GTCCAAAACAATGAAAAAAT+TGG - chr5_2:36122977-36122996 Msa0768960:CDS 25.0%
!! TTACATTTTTACTGTTACTC+TGG - chr5_2:36123016-36123035 Msa0768960:CDS 25.0%
!!! ACTTTGAAATATGTCTTGAA+AGG + chr5_2:36123351-36123370 None:intergenic 25.0%
! TTTCAAGACATATTTCAAAG+TGG - chr5_2:36123350-36123369 Msa0768960:CDS 25.0%
!!! AAATTCTGTTTTGGTAAAGT+GGG - chr5_2:36123775-36123794 Msa0768960:intron 25.0%
! AATCAGTTACATGAAACATT+AGG + chr5_2:36123846-36123865 None:intergenic 25.0%
!! TTTCATGTAACTGATTCAAT+TGG - chr5_2:36123850-36123869 Msa0768960:intron 25.0%
! AATGATAGGTAGAAAAATGA+GGG - chr5_2:36123952-36123971 Msa0768960:intron 25.0%
!! TTTAGAACAATTCAACCATT+AGG + chr5_2:36124072-36124091 None:intergenic 25.0%
!!! TTAACTTGCCTATACAATAT+CGG - chr5_2:36124104-36124123 Msa0768960:five_prime_UTR 25.0%
!!! ATGAGATATGGTCTTATAAA+TGG + chr5_2:36124151-36124170 None:intergenic 25.0%
GAATAGTTGTAATGTTGAAG+TGG + chr5_2:36119031-36119050 None:intergenic 30.0%
!! GATACCACTTTTCTTTTCTT+TGG - chr5_2:36119173-36119192 Msa0768960:three_prime_UTR 30.0%
! TTTTCTTTTCTTTGGTTGCA+TGG - chr5_2:36119181-36119200 Msa0768960:three_prime_UTR 30.0%
ATGATTCTTGAGAAGAAAAC+AGG + chr5_2:36119209-36119228 None:intergenic 30.0%
! TGTTTTCTTCTCAAGAATCA+TGG - chr5_2:36119208-36119227 Msa0768960:three_prime_UTR 30.0%
AGAATCATGGAATATTGAGA+TGG - chr5_2:36119221-36119240 Msa0768960:three_prime_UTR 30.0%
TCTTTAATCTGGGTTTGATT+TGG - chr5_2:36119292-36119311 Msa0768960:exon 30.0%
!!! ATTTTTATTTGCTGGTTCCT+TGG - chr5_2:36119335-36119354 Msa0768960:CDS 30.0%
TAGAAAACCCTTAGTTGAAT+GGG - chr5_2:36119821-36119840 Msa0768960:intron 30.0%
! TTGTTTTCCCATTCAACTAA+GGG + chr5_2:36119831-36119850 None:intergenic 30.0%
!! TTTGTTTTCCCATTCAACTA+AGG + chr5_2:36119832-36119851 None:intergenic 30.0%
TAGAGAGGTAGTTAAAAGTA+TGG - chr5_2:36119890-36119909 Msa0768960:intron 30.0%
AAAAGCAATAACATGGATAG+AGG + chr5_2:36120024-36120043 None:intergenic 30.0%
!! TGCTTTTGATTCATCTTTTG+CGG - chr5_2:36120037-36120056 Msa0768960:intron 30.0%
!! TCATTGATTGATTTGAAGCT+AGG - chr5_2:36120119-36120138 Msa0768960:intron 30.0%
!! CATTGATTGATTTGAAGCTA+GGG - chr5_2:36120120-36120139 Msa0768960:intron 30.0%
!!! GGTATATTTTTTGGTTCCTT+TGG - chr5_2:36120414-36120433 Msa0768960:intron 30.0%
ATACTTCTCTTACAATCAGA+TGG - chr5_2:36120455-36120474 Msa0768960:intron 30.0%
!! AATAATACGAGAGGTATTGA+TGG + chr5_2:36120622-36120641 None:intergenic 30.0%
CTCTGATCAATTAGTGTATA+TGG - chr5_2:36120739-36120758 Msa0768960:intron 30.0%
TAGACTATGAATGACTACTA+TGG + chr5_2:36120815-36120834 None:intergenic 30.0%
AAGATTCTTCAGTCATATCA+AGG - chr5_2:36121072-36121091 Msa0768960:intron 30.0%
AATTCTCAAAAGAACAGATG+AGG + chr5_2:36121163-36121182 None:intergenic 30.0%
ACGGAAATATCATTTGTTCA+TGG + chr5_2:36121234-36121253 None:intergenic 30.0%
ATATTTCCAAATTGCCATCA+TGG - chr5_2:36121289-36121308 Msa0768960:intron 30.0%
CAAATATCTTATTCCTAGCA+TGG + chr5_2:36121349-36121368 None:intergenic 30.0%
! AGGATGCTACACTTTTATAA+TGG + chr5_2:36121447-36121466 None:intergenic 30.0%
AATCAGAAGGTTTCTATTTC+AGG - chr5_2:36121664-36121683 Msa0768960:intron 30.0%
! TTAGTTAGGATTTTGTGTGA+AGG - chr5_2:36121703-36121722 Msa0768960:intron 30.0%
!!! AGTTTTTTGACTTTGTGATG+TGG - chr5_2:36121823-36121842 Msa0768960:intron 30.0%
! TCTATTAGCTTATGGTATAC+AGG - chr5_2:36121864-36121883 Msa0768960:intron 30.0%
ATAGCTTAAATCTCTCAAGT+TGG - chr5_2:36121891-36121910 Msa0768960:intron 30.0%
! TTTTCTATTAGTAGCCTCTA+AGG - chr5_2:36121947-36121966 Msa0768960:intron 30.0%
!!! TTTTAATTTCAGTTCATGGC+AGG + chr5_2:36122195-36122214 None:intergenic 30.0%
GGACCACAAAAATTAAAAGA+TGG + chr5_2:36122306-36122325 None:intergenic 30.0%
!!! TTTTAATTTTTGTGGTCCCA+GGG - chr5_2:36122308-36122327 Msa0768960:intron 30.0%
TTGTGCATAAAAAACTCTGA+TGG + chr5_2:36122372-36122391 None:intergenic 30.0%
TTGTCTTTCTGTTTGATGTT+TGG - chr5_2:36122700-36122719 Msa0768960:intron 30.0%
! GTTAAACTTTTATAGCAGAC+AGG + chr5_2:36122730-36122749 None:intergenic 30.0%
TCTGCTATAAAAGTTTAACG+AGG - chr5_2:36122731-36122750 Msa0768960:CDS 30.0%
! TCTAAAATAAATCTTCCCGA+TGG - chr5_2:36123250-36123269 Msa0768960:CDS 30.0%
CTAAAATAAATCTTCCCGAT+GGG - chr5_2:36123251-36123270 Msa0768960:CDS 30.0%
! TAGATTCTTTGCTATATGTG+TGG + chr5_2:36123286-36123305 None:intergenic 30.0%
TTCTCTTACACTAAATGTGT+AGG - chr5_2:36123311-36123330 Msa0768960:CDS 30.0%
! AGATTTGATCATGCTTTTCT+GGG + chr5_2:36123385-36123404 None:intergenic 30.0%
AATTGTCTTCTAACCTTCAA+AGG - chr5_2:36123738-36123757 Msa0768960:intron 30.0%
ATTGTCTTCTAACCTTCAAA+GGG - chr5_2:36123739-36123758 Msa0768960:intron 30.0%
! GAAGCAAAGAAATTCTGTTT+TGG - chr5_2:36123766-36123785 Msa0768960:intron 30.0%
!!! GAAATTCTGTTTTGGTAAAG+TGG - chr5_2:36123774-36123793 Msa0768960:intron 30.0%
CAATGATAGGTAGAAAAATG+AGG - chr5_2:36123951-36123970 Msa0768960:intron 30.0%
AAAATGAGGGATATCAATGT+TGG - chr5_2:36123965-36123984 Msa0768960:intron 30.0%
!!! TGATTTTGGTGTTACAAAGT+TGG + chr5_2:36124009-36124028 None:intergenic 30.0%
TTTACAAGCCGATATTGTAT+AGG + chr5_2:36124115-36124134 None:intergenic 30.0%
! ACATCAACGTAACATGCTTT+TGG - chr5_2:36118964-36118983 Msa0768960:three_prime_UTR 35.0%
!! AACGTAACATGCTTTTGGTT+TGG - chr5_2:36118969-36118988 Msa0768960:three_prime_UTR 35.0%
GTAACCTGAAAGATGAATTG+TGG + chr5_2:36119141-36119160 None:intergenic 35.0%
GCAACCAAAGAAAAGAAAAG+TGG + chr5_2:36119180-36119199 None:intergenic 35.0%
TTGACACTATATGCAAACCA+AGG + chr5_2:36119355-36119374 None:intergenic 35.0%
ACAAATAGCTTCTCTCTTCA+GGG + chr5_2:36119758-36119777 None:intergenic 35.0%
AACAAATAGCTTCTCTCTTC+AGG + chr5_2:36119759-36119778 None:intergenic 35.0%
GTAGAAAACCCTTAGTTGAA+TGG - chr5_2:36119820-36119839 Msa0768960:intron 35.0%
TCATGTAACTTTGAACGAGA+CGG - chr5_2:36119855-36119874 Msa0768960:intron 35.0%
!!! CGGTTTTAATTCAGATAGAG+AGG - chr5_2:36119875-36119894 Msa0768960:intron 35.0%
AAGTATGGAATTTGTGGACT+TGG - chr5_2:36119905-36119924 Msa0768960:intron 35.0%
AGTATGGAATTTGTGGACTT+GGG - chr5_2:36119906-36119925 Msa0768960:intron 35.0%
ATTAGTAGATTGTCAAGGTG+TGG - chr5_2:36120145-36120164 Msa0768960:intron 35.0%
TTAGTAGATTGTCAAGGTGT+GGG - chr5_2:36120146-36120165 Msa0768960:intron 35.0%
CCATGTTACAACCATAAACT+TGG + chr5_2:36120280-36120299 None:intergenic 35.0%
CCAAGTTTATGGTTGTAACA+TGG - chr5_2:36120277-36120296 Msa0768960:intron 35.0%
ACAGCTAAAGTTATCGTCAA+TGG - chr5_2:36120359-36120378 Msa0768960:intron 35.0%
!!! AGTGCAGCAGGTATATTTTT+TGG - chr5_2:36120405-36120424 Msa0768960:intron 35.0%
! ATCAAAGAAGTGCAGAAATG+AGG + chr5_2:36120530-36120549 None:intergenic 35.0%
CAAATAAACTAGACGGCATT+TGG + chr5_2:36120706-36120725 None:intergenic 35.0%
TTCTTGAATTAGGTTCCATC+TGG - chr5_2:36120945-36120964 Msa0768960:intron 35.0%
TAACTCTATTGAACGCTTCA+CGG + chr5_2:36121253-36121272 None:intergenic 35.0%
TAAACACCATGATGGCAATT+TGG + chr5_2:36121298-36121317 None:intergenic 35.0%
AATCCTCATAAACACCATGA+TGG + chr5_2:36121306-36121325 None:intergenic 35.0%
CATGGTGTTTATGAGGATTT+AGG - chr5_2:36121307-36121326 Msa0768960:intron 35.0%
! TAGGTCATATTTTCCCACTT+GGG + chr5_2:36121395-36121414 None:intergenic 35.0%
! TTAGGTCATATTTTCCCACT+TGG + chr5_2:36121396-36121415 None:intergenic 35.0%
!!! TTTTTTCTGTCACTACGGTT+AGG + chr5_2:36121414-36121433 None:intergenic 35.0%
!!! GAAGGTTTTTTCTGTCACTA+CGG + chr5_2:36121419-36121438 None:intergenic 35.0%
ATGTGGTGGTTAAAGATTAG+AGG + chr5_2:36121634-36121653 None:intergenic 35.0%
! TTAGGATTTTGTGTGAAGGT+AGG - chr5_2:36121707-36121726 Msa0768960:intron 35.0%
! TAGGATTTTGTGTGAAGGTA+GGG - chr5_2:36121708-36121727 Msa0768960:intron 35.0%
TGATTAATACTCTTCCCTTG+AGG + chr5_2:36121918-36121937 None:intergenic 35.0%
! GAAATTTGGGTTAGGTAATG+CGG - chr5_2:36122140-36122159 Msa0768960:CDS 35.0%
!!! CTTTTAATTTTTGTGGTCCC+AGG - chr5_2:36122307-36122326 Msa0768960:intron 35.0%
GTACACACACTTTACTCTTA+CGG + chr5_2:36122616-36122635 None:intergenic 35.0%
GAGTAAAGTGTGTGTACTTA+AGG - chr5_2:36122619-36122638 Msa0768960:intron 35.0%
GCAATGTAATGAGCTTTCAT+TGG + chr5_2:36122797-36122816 None:intergenic 35.0%
! AGTTATAAAGTGGGCTTATG+TGG + chr5_2:36122819-36122838 None:intergenic 35.0%
! GAGATTTGATCATGCTTTTC+TGG + chr5_2:36123386-36123405 None:intergenic 35.0%
CATGATCAAATCTCTCAAAG+TGG - chr5_2:36123392-36123411 Msa0768960:exon 35.0%
TCAAAGTGGACATATCAAAC+TGG - chr5_2:36123406-36123425 Msa0768960:five_prime_UTR 35.0%
!! TCAAAGGTGTTTCAGAAACT+TGG + chr5_2:36123613-36123632 None:intergenic 35.0%
! GAAATGAGTCTTTTCCATGT+GGG - chr5_2:36123660-36123679 Msa0768960:intron 35.0%
CAATTGAAACAGATCAACAG+TGG + chr5_2:36123723-36123742 None:intergenic 35.0%
! TTGGTGAGATTTTTCTTACG+TGG - chr5_2:36123900-36123919 Msa0768960:intron 35.0%
TACGTGGATAGACATGTTAA+TGG - chr5_2:36123916-36123935 Msa0768960:intron 35.0%
GACATGTTAATGGCTCAATA+TGG - chr5_2:36123926-36123945 Msa0768960:intron 35.0%
GCTCAATATGGATCAATGAT+AGG - chr5_2:36123938-36123957 Msa0768960:intron 35.0%
CTTTGTAACACCAAAATCAC+TGG - chr5_2:36124010-36124029 Msa0768960:five_prime_UTR 35.0%
!!! ATGCTTTTGGTTTGGACGTT+TGG - chr5_2:36118977-36118996 Msa0768960:three_prime_UTR 40.0%
!!! TTTTGGTTTGGACGTTTGGT+AGG - chr5_2:36118981-36119000 Msa0768960:three_prime_UTR 40.0%
ACCTGAAAGATGAATTGTGG+TGG + chr5_2:36119138-36119157 None:intergenic 40.0%
GGGAGATTAGTAGATTGTCA+AGG - chr5_2:36120140-36120159 Msa0768960:intron 40.0%
TAGTAGATTGTCAAGGTGTG+GGG - chr5_2:36120147-36120166 Msa0768960:intron 40.0%
GCTAACACGCTTTGATGAAT+CGG + chr5_2:36120212-36120231 None:intergenic 40.0%
CAACCATAAACTTGGCATAC+AGG + chr5_2:36120272-36120291 None:intergenic 40.0%
! CCTTTTGTGGTAATCTTTCG+AGG + chr5_2:36120312-36120331 None:intergenic 40.0%
CCTCGAAAGATTACCACAAA+AGG - chr5_2:36120309-36120328 Msa0768960:intron 40.0%
GACGATAACTTTAGCTGTCT+TGG + chr5_2:36120357-36120376 None:intergenic 40.0%
CAAGACTGGACATTTACAAG+TGG + chr5_2:36120875-36120894 None:intergenic 40.0%
AATCGAACTGAGGTTTCCTT+CGG + chr5_2:36121032-36121051 None:intergenic 40.0%
CTAGTCATGTAATCGAACTG+AGG + chr5_2:36121042-36121061 None:intergenic 40.0%
TTGCCATCATGGTGTTTATG+AGG - chr5_2:36121300-36121319 Msa0768960:intron 40.0%
GTTTATGAGGATTTAGGTCC+TGG - chr5_2:36121313-36121332 Msa0768960:intron 40.0%
TAGCATGGAATAGATAGACC+AGG + chr5_2:36121334-36121353 None:intergenic 40.0%
TGGTCTATCTATTCCATGCT+AGG - chr5_2:36121333-36121352 Msa0768960:intron 40.0%
CAGAAGGTTTCTATTTCAGG+AGG - chr5_2:36121667-36121686 Msa0768960:intron 40.0%
TGCTCTCTTTCTAGATTCCA+AGG + chr5_2:36122218-36122237 None:intergenic 40.0%
!!! AGACTAGTTTTTCGCTATCG+TGG - chr5_2:36122420-36122439 Msa0768960:intron 40.0%
! TAGTTTTTCGCTATCGTGGT+AGG - chr5_2:36122424-36122443 Msa0768960:intron 40.0%
CAATAGAAGGTCACTGTTGT+TGG - chr5_2:36122501-36122520 Msa0768960:intron 40.0%
! TGTGTGTACTTAAGGCACTA+GGG - chr5_2:36122627-36122646 Msa0768960:intron 40.0%
AAGTTAAAGAATCCCTGGTG+TGG + chr5_2:36122863-36122882 None:intergenic 40.0%
!! GATCATGCTTTTCTGGGAAA+AGG + chr5_2:36123379-36123398 None:intergenic 40.0%
TGGACATATCAAACTGGAAG+AGG - chr5_2:36123412-36123431 Msa0768960:five_prime_UTR 40.0%
TAATTCGTGTCCATGTGTAG+CGG + chr5_2:36123468-36123487 None:intergenic 40.0%
!!! CTACTGCCAGTACTTTTTTC+CGG - chr5_2:36123561-36123580 Msa0768960:intron 40.0%
!!! TACTGCCAGTACTTTTTTCC+GGG - chr5_2:36123562-36123581 Msa0768960:intron 40.0%
! CGAAATGAGTCTTTTCCATG+TGG - chr5_2:36123659-36123678 Msa0768960:intron 40.0%
TCCATGTGGGATAAACTCTA+AGG - chr5_2:36123673-36123692 Msa0768960:intron 40.0%
TCCTTAGAGTTTATCCCACA+TGG + chr5_2:36123677-36123696 None:intergenic 40.0%
!! GCTGTTTCTCAAACGTGTAA+AGG - chr5_2:36123810-36123829 Msa0768960:intron 40.0%
! AAAAGTGCGATATGGCCTAA+TGG - chr5_2:36124054-36124073 Msa0768960:intron 40.0%
! TGGCAACTTGTGAGTGGTTT+TGG + chr5_2:36119118-36119137 None:intergenic 45.0%
GCCACCACAATTCATCTTTC+AGG - chr5_2:36119134-36119153 Msa0768960:three_prime_UTR 45.0%
TGTGGACTTGGGATTTCCTA+TGG - chr5_2:36119917-36119936 Msa0768960:intron 45.0%
GATTTCCTATGGAGGCTTCT+AGG - chr5_2:36119928-36119947 Msa0768960:intron 45.0%
!! TTCTAGGACTGTTCGTGGTT+CGG - chr5_2:36119944-36119963 Msa0768960:intron 45.0%
AAGCAGGTAAGCTAGAAGTG+CGG + chr5_2:36120244-36120263 None:intergenic 45.0%
!! CACTTCTAGCTTACCTGCTT+TGG - chr5_2:36120244-36120263 Msa0768960:intron 45.0%
GCTCCTGTATGCCAAGTTTA+TGG - chr5_2:36120266-36120285 Msa0768960:intron 45.0%
! CGCAGACTTTATGCCTTTTG+TGG + chr5_2:36120325-36120344 None:intergenic 45.0%
! TCGTCAATGGTGTTGAACAG+AGG - chr5_2:36120372-36120391 Msa0768960:intron 45.0%
TACAGAGCAGTTTGCAAGAC+TGG + chr5_2:36120889-36120908 None:intergenic 45.0%
CTTTGTGATGTGGAGCCATA+TGG - chr5_2:36121833-36121852 Msa0768960:intron 45.0%
!! ATCTCTCAAGTTGGTCCTCA+AGG - chr5_2:36121900-36121919 Msa0768960:intron 45.0%
!! TCTCTCAAGTTGGTCCTCAA+GGG - chr5_2:36121901-36121920 Msa0768960:intron 45.0%
AATGGTCCACATCATTCCCT+GGG + chr5_2:36122327-36122346 None:intergenic 45.0%
AAATGGTCCACATCATTCCC+TGG + chr5_2:36122328-36122347 None:intergenic 45.0%
! GTGTGTGTACTTAAGGCACT+AGG - chr5_2:36122626-36122645 Msa0768960:intron 45.0%
AAACTAGGCAAAACCACACC+AGG - chr5_2:36122847-36122866 Msa0768960:CDS 45.0%
AACTAGGCAAAACCACACCA+GGG - chr5_2:36122848-36122867 Msa0768960:CDS 45.0%
TTAAGCCAGAACTGCATCAG+GGG + chr5_2:36123146-36123165 None:intergenic 45.0%
GTTAAGCCAGAACTGCATCA+GGG + chr5_2:36123147-36123166 None:intergenic 45.0%
TGTTAAGCCAGAACTGCATC+AGG + chr5_2:36123148-36123167 None:intergenic 45.0%
CTAGTTGAGGGCTGCAAATT+GGG + chr5_2:36123439-36123458 None:intergenic 45.0%
TCTAGTTGAGGGCTGCAAAT+TGG + chr5_2:36123440-36123459 None:intergenic 45.0%
AATTCGTGTCCATGTGTAGC+GGG + chr5_2:36123467-36123486 None:intergenic 45.0%
!! CTGATGGATTTCCTGCTGTT+TGG + chr5_2:36123541-36123560 None:intergenic 45.0%
!! AAAGTACTGGCAGTAGCTGA+TGG + chr5_2:36123557-36123576 None:intergenic 45.0%
! GATGTCCCGGAAAAAAGTAC+TGG + chr5_2:36123570-36123589 None:intergenic 45.0%
TTCGCAGAGCTTGTCATCAA+AGG + chr5_2:36123629-36123648 None:intergenic 45.0%
GTCTTCTAACCTTCAAAGGG+TGG - chr5_2:36123742-36123761 Msa0768960:intron 45.0%
TTTGCTTCTCCACCCTTTGA+AGG + chr5_2:36123754-36123773 None:intergenic 45.0%
!! TTTATATCTAAAAAAATAAA+GGG + chr5_2:36122906-36122925 None:intergenic 5.0%
!!! TTTTATATCTAAAAAAATAA+AGG + chr5_2:36122907-36122926 None:intergenic 5.0%
AGAGAGAGAGAGAGAGAGAG+TGG + chr5_2:36119063-36119082 None:intergenic 50.0%
TTGTGGTGGCAACTTGTGAG+TGG + chr5_2:36119124-36119143 None:intergenic 50.0%
GGACTTGGGATTTCCTATGG+AGG - chr5_2:36119920-36119939 Msa0768960:intron 50.0%
ACAGTCCTAGAAGCCTCCAT+AGG + chr5_2:36119936-36119955 None:intergenic 50.0%
TCAGACATCTAGCTGTGAGC+TGG - chr5_2:36119968-36119987 Msa0768960:intron 50.0%
! AGCAGGTAAGCTAGAAGTGC+GGG + chr5_2:36120243-36120262 None:intergenic 50.0%
CGTCGAACTCAGTTACCAGA+TGG + chr5_2:36120963-36120982 None:intergenic 50.0%
CTGGTAACTGAGTTCGACGA+TGG - chr5_2:36120964-36120983 Msa0768960:intron 50.0%
TGTGGAACAACGTTCCCATC+GGG + chr5_2:36123268-36123287 None:intergenic 50.0%
GTGTGGAACAACGTTCCCAT+CGG + chr5_2:36123269-36123288 None:intergenic 50.0%
! TAGCGGGCACTTCTAGTTGA+GGG + chr5_2:36123451-36123470 None:intergenic 50.0%
CTGACAGAAGAGAGAGAGCA+TGG + chr5_2:36123496-36123515 None:intergenic 50.0%
!! TTTCCTGCTGTTTGGTGCGA+CGG + chr5_2:36123533-36123552 None:intergenic 50.0%
TATCTTGAGTGCGGATGTCC+CGG + chr5_2:36123583-36123602 None:intergenic 50.0%
GACATCCGCACTCAAGATAG+AGG - chr5_2:36123584-36123603 Msa0768960:intron 50.0%
!! GAGGCTTCTAGGACTGTTCG+TGG - chr5_2:36119939-36119958 Msa0768960:intron 55.0%
! GCTAGAAGTGCGGGATCTCT+TGG + chr5_2:36120234-36120253 None:intergenic 55.0%
TGGCATACAGGAGCCAAAGC+AGG + chr5_2:36120260-36120279 None:intergenic 55.0%
!! GGTTTTGTCAGCAGTGCAGC+AGG - chr5_2:36120393-36120412 Msa0768960:intron 55.0%
ATGGTAAGCGCAGTTGTCGC+AGG - chr5_2:36120983-36121002 Msa0768960:intron 55.0%
TGTGGTCCCAGGGAATGATG+TGG - chr5_2:36122318-36122337 Msa0768960:intron 55.0%
AAGGACCCCTGATGCAGTTC+TGG - chr5_2:36123138-36123157 Msa0768960:CDS 55.0%
!! GTAGCGGGCACTTCTAGTTG+AGG + chr5_2:36123452-36123471 None:intergenic 55.0%
!! CTAGAAGTGCCCGCTACACA+TGG - chr5_2:36123455-36123474 Msa0768960:five_prime_UTR 55.0%
AATCCGTCGCACCAAACAGC+AGG - chr5_2:36123527-36123546 Msa0768960:intron 55.0%
GGTCGCCTCTATCTTGAGTG+CGG + chr5_2:36123592-36123611 None:intergenic 55.0%
AGTTGTCGCAGGCGTCTAGC+TGG - chr5_2:36120994-36121013 Msa0768960:intron 60.0%
!! CTGGACACAATGAGCGCCGA+AGG - chr5_2:36121013-36121032 Msa0768960:intron 60.0%
Chromosome Type Strat End Strand Name
chr5_2 gene 36118957 36124176 36118957 ID=Msa0768960;Name=Msa0768960
chr5_2 mRNA 36118957 36124176 36118957 ID=Msa0768960-mRNA-1;Parent=Msa0768960;Name=Msa0768960-mRNA-1;_AED=0.08;_eAED=0.08;_QI=260|0.75|0.8|1|0.5|0.4|5|347|437
chr5_2 exon 36118957 36119800 36118957 ID=Msa0768960-mRNA-1:exon:12168;Parent=Msa0768960-mRNA-1
chr5_2 exon 36122040 36122176 36122040 ID=Msa0768960-mRNA-1:exon:12167;Parent=Msa0768960-mRNA-1
chr5_2 exon 36122719 36123485 36122719 ID=Msa0768960-mRNA-1:exon:12166;Parent=Msa0768960-mRNA-1
chr5_2 exon 36123978 36124057 36123978 ID=Msa0768960-mRNA-1:exon:12165;Parent=Msa0768960-mRNA-1
chr5_2 exon 36124084 36124176 36124084 ID=Msa0768960-mRNA-1:exon:12164;Parent=Msa0768960-mRNA-1
chr5_2 five_prime_UTR 36124084 36124176 36124084 ID=Msa0768960-mRNA-1:five_prime_utr;Parent=Msa0768960-mRNA-1
chr5_2 five_prime_UTR 36123978 36124057 36123978 ID=Msa0768960-mRNA-1:five_prime_utr;Parent=Msa0768960-mRNA-1
chr5_2 five_prime_UTR 36123399 36123485 36123399 ID=Msa0768960-mRNA-1:five_prime_utr;Parent=Msa0768960-mRNA-1
chr5_2 CDS 36122719 36123398 36122719 ID=Msa0768960-mRNA-1:cds;Parent=Msa0768960-mRNA-1
chr5_2 CDS 36122040 36122176 36122040 ID=Msa0768960-mRNA-1:cds;Parent=Msa0768960-mRNA-1
chr5_2 CDS 36119304 36119800 36119304 ID=Msa0768960-mRNA-1:cds;Parent=Msa0768960-mRNA-1
chr5_2 three_prime_UTR 36118957 36119303 36118957 ID=Msa0768960-mRNA-1:three_prime_utr;Parent=Msa0768960-mRNA-1
Gene Sequence

>Msa0768960

ATGGAATCTTGGAGTTATATCCCTGAAGAGAGAAGCTATTTGTTTTCTGATGAAATGGATTTTTCACTTGATGCTTTTATGAGAAGTAGAAAACCCTTAGTTGAATGGGAAAACAAATCTTCATGTAACTTTGAACGAGACGGTTTTAATTCAGATAGAGAGGTAGTTAAAAGTATGGAATTTGTGGACTTGGGATTTCCTATGGAGGCTTCTAGGACTGTTCGTGGTTCGGTTCAGACATCTAGCTGTGAGCTGGATAGTAATAATTCTAGTAAAAGAGAGAATTCCTCTATCCATGTTATTGCTTTTGATTCATCTTTTGCGGAAGAAGATTCTGAGTCAAAGCATTTAAGTTCTTTAGTTGAATCGAAAAATCATGATTCTTCATTGATTGATTTGAAGCTAGGGAGATTAGTAGATTGTCAAGGTGTGGGGAGTGATAGAGATGCAAAAACATTCGCTTCTGAATCTATGCCGATTCATCAAAGCGTGTTAGCCAAGAGATCCCGCACTTCTAGCTTACCTGCTTTGGCTCCTGTATGCCAAGTTTATGGTTGTAACATGGATCTTAGCTCCTCGAAAGATTACCACAAAAGGCATAAAGTCTGCGATGTTCACTCCAAGACAGCTAAAGTTATCGTCAATGGTGTTGAACAGAGGTTTTGTCAGCAGTGCAGCAGGTTCCATCTGGTAACTGAGTTCGACGATGGTAAGCGCAGTTGTCGCAGGCGTCTAGCTGGACACAATGAGCGCCGAAGGAAACCTCAGTTCGATTACATGACTAGTAAACAACACAAGATTCTTCAGTCATATCAAGGTACTAACAACTTTTCCTTTCAAGACATATTTCAAAGTGGAATCCTTTTCCCAGAAAAGCATGATCAAATCTCTCAAAGTGGACATATCAAACTGGAAGAGGACCCAATTTGCAGCCCTCAACTAGAAGTGCCCGCTACACATGGACACGAATTATCTAGCCATGCTCTCTCTCTTCTGTCAGCTCAGTCACAGAATCCGTCGCACCAAACAGCAGGAAATCCATCAGCTACTGCCAGTACTTTTTTCCGGGACATCCGCACTCAAGATAGAGGCGACCAAGTTTCTGAAACACCTTTGATGACAAGCTCTGCGAATAAACATGAACGAAATGAGTCTTTTCCATGTGGGATAAACTCTAAGGAAATTATTAAATCTGAACATGGTGCCACTGTTGATCTGTTTCAATTGTCTTCTAACCTTCAAAGGGTGGAGAAGCAAAGAAATTCTGTTTTGGTAAAGTGGGAAAATGAAGATTGCTGTTTCTCAAACGTGTAA
Protein sequence

>Msa0768960

MESWSYIPEERSYLFSDEMDFSLDAFMRSRKPLVEWENKSSCNFERDGFNSDREVVKSMEFVDLGFPMEASRTVRGSVQTSSCELDSNNSSKRENSSIHVIAFDSSFAEEDSESKHLSSLVESKNHDSSLIDLKLGRLVDCQGVGSDRDAKTFASESMPIHQSVLAKRSRTSSLPALAPVCQVYGCNMDLSSSKDYHKRHKVCDVHSKTAKVIVNGVEQRFCQQCSRFHLVTEFDDGKRSCRRRLAGHNERRRKPQFDYMTSKQHKILQSYQGTNNFSFQDIFQSGILFPEKHDQISQSGHIKLEEDPICSPQLEVPATHGHELSSHALSLLSAQSQNPSHQTAGNPSATASTFFRDIRTQDRGDQVSETPLMTSSANKHERNESFPCGINSKEIIKSEHGATVDLFQLSSNLQRVEKQRNSVLVKWENEDCCFSNV*