Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0078420 | XP_013468859.1 | 95.339 | 472 | 12 | 3 | 1 | 467 | 1 | 467 | 0.0 | 902 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0078420 | sp|Q9M0N1|PUX10_ARATH | 66.872 | 486 | 133 | 4 | 1 | 465 | 1 | 479 | 0.0 | 615 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0078420 | A0A072VMS3 | 95.339 | 472 | 12 | 3 | 1 | 467 | 1 | 467 | 0.0 | 902 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0018940 | Msa0078420 | 0.818104 | 2.332663e-52 | -8.615850e-47 |
| Msa0050200 | Msa0078420 | 0.806911 | 6.534526e-50 | -8.615850e-47 |
| Msa0078420 | Msa0079230 | 0.801585 | 8.399865e-49 | -8.615850e-47 |
| Msa0078420 | Msa0126080 | 0.900697 | 5.652278e-78 | -8.615850e-47 |
| Msa0078420 | Msa0169820 | 0.803998 | 2.667022e-49 | -8.615850e-47 |
| Msa0078420 | Msa0183010 | -0.806762 | 7.028987e-50 | -8.615850e-47 |
| Msa0078420 | Msa0186950 | 0.844404 | 7.720004e-59 | -8.615850e-47 |
| Msa0078420 | Msa0199800 | -0.845676 | 3.500060e-59 | -8.615850e-47 |
| Msa0078420 | Msa0230640 | -0.811075 | 8.392173e-51 | -8.615850e-47 |
| Msa0078420 | Msa0243320 | 0.810916 | 9.083428e-51 | -8.615850e-47 |
| Msa0078420 | Msa0265150 | 0.817058 | 4.015806e-52 | -8.615850e-47 |
| Msa0078420 | Msa0300150 | 0.809073 | 2.266173e-50 | -8.615850e-47 |
| Msa0078420 | Msa0341230 | 0.804765 | 1.845880e-49 | -8.615850e-47 |
| Msa0078420 | Msa0350320 | -0.804959 | 1.681418e-49 | -8.615850e-47 |
| Msa0078420 | Msa0377440 | 0.802108 | 6.560521e-49 | -8.615850e-47 |
| Msa0078420 | Msa0387280 | 0.808769 | 2.631717e-50 | -8.615850e-47 |
| Msa0078420 | Msa0390960 | 0.811209 | 7.851097e-51 | -8.615850e-47 |
| Msa0078420 | Msa0430870 | 0.805171 | 1.518490e-49 | -8.615850e-47 |
| Msa0078420 | Msa0521740 | 0.808848 | 2.530887e-50 | -8.615850e-47 |
| Msa0078420 | Msa0687280 | 0.805110 | 1.563964e-49 | -8.615850e-47 |
| Msa0078420 | Msa0753720 | 0.800338 | 1.510341e-48 | -8.615850e-47 |
| Msa0078420 | Msa0919470 | 0.815530 | 8.820539e-52 | -8.615850e-47 |
| Msa0078420 | Msa0970480 | 0.803153 | 3.993357e-49 | -8.615850e-47 |
| Msa0078420 | Msa0981310 | 0.811239 | 7.733459e-51 | -8.615850e-47 |
| Msa0078420 | Msa1008750 | 0.819548 | 1.096475e-52 | -8.615850e-47 |
| Msa0078420 | Msa1026640 | 0.802811 | 4.700152e-49 | -8.615850e-47 |
| Msa0078420 | Msa1039710 | -0.809714 | 1.650979e-50 | -8.615850e-47 |
| Msa0078420 | Msa1121110 | 0.803531 | 3.334599e-49 | -8.615850e-47 |
| Msa0078420 | Msa1215070 | 0.808878 | 2.494088e-50 | -8.615850e-47 |
| Msa0078420 | Msa1263290 | -0.834642 | 2.663376e-56 | -8.615850e-47 |
| Msa0078420 | Msa1264420 | 0.853863 | 1.803963e-61 | -8.615850e-47 |
| Msa0078420 | Msa1270660 | 0.825259 | 5.168032e-54 | -8.615850e-47 |
| Msa0078420 | Msa1270730 | 0.802114 | 6.541732e-49 | -8.615850e-47 |
| Msa0078420 | Msa1335230 | 0.800795 | 1.218847e-48 | -8.615850e-47 |
| Msa0078420 | Msa1349450 | 0.809324 | 2.001695e-50 | -8.615850e-47 |
| Msa0078420 | Msa1359920 | 0.802842 | 4.630305e-49 | -8.615850e-47 |
| Msa0078420 | Msa1373350 | 0.800493 | 1.404361e-48 | -8.615850e-47 |
| Msa0078420 | Msa1377570 | 0.814652 | 1.381456e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0078420 | MtrunA17_Chr1g0188921 | 95.339 | 472 | 12 | 3 | 1 | 467 | 1 | 467 | 0.0 | 902 |
| Msa0078420 | MtrunA17_Chr4g0058781 | 37.883 | 359 | 199 | 6 | 120 | 464 | 22 | 370 | 6.96e-74 | 237 |
| Msa0078420 | MtrunA17_Chr4g0057301 | 36.667 | 180 | 91 | 5 | 288 | 465 | 421 | 579 | 3.09e-14 | 75.1 |
| Msa0078420 | MtrunA17_Chr8g0350381 | 30.625 | 160 | 96 | 3 | 307 | 465 | 389 | 534 | 2.68e-13 | 72.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0078420 | AT4G10790.1 | 66.872 | 486 | 133 | 4 | 1 | 465 | 1 | 479 | 0.0 | 615 |
| Msa0078420 | AT4G23040.1 | 34.225 | 187 | 104 | 4 | 281 | 465 | 355 | 524 | 2.19e-14 | 75.9 |
| Msa0078420 | AT4G11740.1 | 32.222 | 180 | 110 | 3 | 288 | 465 | 394 | 563 | 7.15e-13 | 71.2 |
Find 138 sgRNAs with CRISPR-Local
Find 459 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGATCCTCGCCGCTCATAAT+TGG | 0.132781 | 1_2:+55939797 | Msa0078420:CDS |
| TATGTATTCATAAGATTATT+TGG | 0.208264 | 1_2:-55945699 | None:intergenic |
| AATTGAATTGAATTGGAATT+TGG | 0.209556 | 1_2:-55939616 | None:intergenic |
| CATATATTATACTCTGTTTC+CGG | 0.235845 | 1_2:+55945913 | Msa0078420:three_prime_UTR |
| ACTCACAAAATTCGGCTTAA+AGG | 0.251262 | 1_2:-55940220 | None:intergenic |
| ATCTCAGGAGCAATCGGTTT+TGG | 0.260770 | 1_2:+55940024 | Msa0078420:CDS |
| CTACAAAACTCCGGTGTATC+AGG | 0.293692 | 1_2:-55940321 | None:intergenic |
| GTGATTGAATTGAATTGAAT+TGG | 0.294130 | 1_2:-55939623 | None:intergenic |
| TGTTCCAGATCTTTAGAGTA+TGG | 0.296489 | 1_2:+55945945 | Msa0078420:three_prime_UTR |
| GGGTAATTTGATAAGCTTCC+AGG | 0.306850 | 1_2:-55939971 | None:intergenic |
| AGCCTTGCTGCAACAAGAAC+TGG | 0.308918 | 1_2:-55944781 | None:intergenic |
| AACTTCCCTCGGGTTGTTTA+CGG | 0.315174 | 1_2:+55945585 | Msa0078420:CDS |
| TCTGCTGCTGCTTCCTCTGC+TGG | 0.326865 | 1_2:+55940114 | Msa0078420:CDS |
| CTTGGTGAAGAACCTGAAAA+AGG | 0.335458 | 1_2:+55945240 | Msa0078420:CDS |
| AGATCTTTAGAGTATGGTTT+TGG | 0.342427 | 1_2:+55945951 | Msa0078420:three_prime_UTR |
| CTTTCTTTGCGCACACCATT+GGG | 0.343968 | 1_2:-55945471 | None:intergenic |
| CCTTTCTTTGCGCACACCAT+TGG | 0.365652 | 1_2:-55945472 | None:intergenic |
| CGGGTGGTGGTGGTTCTGAT+TGG | 0.368660 | 1_2:-55939942 | None:intergenic |
| GTATGACTATGTTGATTCAT+TGG | 0.383014 | 1_2:+55945527 | Msa0078420:CDS |
| GCAGCAGCAGACGATGAGTT+TGG | 0.387911 | 1_2:-55940102 | None:intergenic |
| TTGAATTGTGAATTGTGAAT+TGG | 0.393391 | 1_2:-55939551 | None:intergenic |
| TATGACTATGTTGATTCATT+GGG | 0.400057 | 1_2:+55945528 | Msa0078420:CDS |
| TACTTTACCTGTGTAACATT+AGG | 0.404801 | 1_2:-55945264 | None:intergenic |
| AAACCCTCACTCACAAAATT+CGG | 0.407434 | 1_2:-55940228 | None:intergenic |
| GAGAATCGCGCTTCTTCAAC+AGG | 0.409834 | 1_2:+55940500 | Msa0078420:CDS |
| GCCAGTCTGTTTGTGGAGCT+CGG | 0.410845 | 1_2:+55945657 | Msa0078420:CDS |
| ACGAACTAATGCACGCTTAA+GGG | 0.410986 | 1_2:+55944819 | Msa0078420:CDS |
| AAGAGCAAGATGCTGCATAT+AGG | 0.414768 | 1_2:+55944842 | Msa0078420:CDS |
| GATAAGCTTCCAGGCTAATC+CGG | 0.419470 | 1_2:-55939962 | None:intergenic |
| TAAAGATGTGACCTGCAGAT+AGG | 0.419579 | 1_2:+55945720 | Msa0078420:three_prime_UTR |
| TCCTCAGGCCAGTCTGTTTG+TGG | 0.421845 | 1_2:+55945650 | Msa0078420:CDS |
| TCTTCTGAATTCTGAATTGT+CGG | 0.422945 | 1_2:+55939668 | Msa0078420:five_prime_UTR |
| GATCCTCGCCGCTCATAATT+GGG | 0.423758 | 1_2:+55939798 | Msa0078420:CDS |
| AGAGCAAGATGCTGCATATA+GGG | 0.429045 | 1_2:+55944843 | Msa0078420:CDS |
| GTTCTGATTGGGATGACGAT+TGG | 0.429670 | 1_2:-55939930 | None:intergenic |
| GGGTGGTGGTGGTTCTGATT+GGG | 0.429776 | 1_2:-55939941 | None:intergenic |
| GACGAACTAATGCACGCTTA+AGG | 0.429809 | 1_2:+55944818 | Msa0078420:CDS |
| TTCTGATTGGGATGACGATT+GGG | 0.430586 | 1_2:-55939929 | None:intergenic |
| TCCGTTATTTCCGGTAGTCT+AGG | 0.435370 | 1_2:+55939997 | Msa0078420:CDS |
| CCCTAGACTACCGGAAATAA+CGG | 0.435835 | 1_2:-55939998 | None:intergenic |
| CTTGTAAACCGGTGATTGCT+TGG | 0.437082 | 1_2:-55939756 | None:intergenic |
| TCGCTTGGCTTCGTCGGCCT+CGG | 0.437191 | 1_2:+55940078 | Msa0078420:CDS |
| TTACCCGTTTCCGTTATTTC+CGG | 0.440143 | 1_2:+55939988 | Msa0078420:CDS |
| TAAGATGAGTAATAGTTTGA+AGG | 0.444349 | 1_2:+55940431 | Msa0078420:CDS |
| TTCTGAATTGTCGGTGCTAA+GGG | 0.446975 | 1_2:+55939677 | Msa0078420:five_prime_UTR |
| AAAACCATACTCTAAAGATC+TGG | 0.447693 | 1_2:-55945949 | None:intergenic |
| AAAGATGTGACCTGCAGATA+GGG | 0.448851 | 1_2:+55945721 | Msa0078420:three_prime_UTR |
| GCCTAGTCTCTAACTTCCCT+CGG | 0.451100 | 1_2:+55945574 | Msa0078420:CDS |
| TGGAATTTGGAGGAAGAAGA+AGG | 0.451435 | 1_2:-55939603 | None:intergenic |
| TCCGGTGTATCAGGATGATC+AGG | 0.452932 | 1_2:-55940312 | None:intergenic |
| TTCCTCTGCTGGCACGCCGT+TGG | 0.453850 | 1_2:+55940125 | Msa0078420:CDS |
| TTGTAGAAGGACGCTTTGTT+CGG | 0.456059 | 1_2:+55940338 | Msa0078420:CDS |
| TCATATTCGCTTGGCTTCGT+CGG | 0.456355 | 1_2:+55940072 | Msa0078420:CDS |
| GGCTCGTGAAAGAGCAGCGC+AGG | 0.457421 | 1_2:+55945161 | Msa0078420:CDS |
| TGAATTGAATTGGAATTTGG+AGG | 0.472761 | 1_2:-55939613 | None:intergenic |
| AGGATCTCGTTGCAGAGGTC+GGG | 0.474470 | 1_2:-55939781 | None:intergenic |
| GCCTTGCTGCAACAAGAACT+GGG | 0.476016 | 1_2:-55944780 | None:intergenic |
| GGTGTTCTTTCATATTCGCT+TGG | 0.477722 | 1_2:+55940063 | Msa0078420:CDS |
| ACTCATCTTAAACCCTTCAC+TGG | 0.478952 | 1_2:-55940418 | None:intergenic |
| CCCCAGTTCTTGTTGCAGCA+AGG | 0.480156 | 1_2:+55944779 | Msa0078420:CDS |
| GGGTTAATCTCAGGAGCAAT+CGG | 0.482162 | 1_2:+55940018 | Msa0078420:CDS |
| GGGAATATTCGTGCCAGTGA+AGG | 0.483459 | 1_2:+55940405 | Msa0078420:CDS |
| CCGTTATTTCCGGTAGTCTA+GGG | 0.484380 | 1_2:+55939998 | Msa0078420:CDS |
| CACCACCACCCGGATTAGCC+TGG | 0.485494 | 1_2:+55939953 | Msa0078420:CDS |
| CTACCGGAAATAACGGAAAC+GGG | 0.489694 | 1_2:-55939991 | None:intergenic |
| CAGGCTAATCCGGGTGGTGG+TGG | 0.492653 | 1_2:-55939952 | None:intergenic |
| CCAATGGTGTGCGCAAAGAA+AGG | 0.500885 | 1_2:+55945472 | Msa0078420:CDS |
| TGGATGCGTTACAGCGGTCG+AGG | 0.501906 | 1_2:+55940253 | Msa0078420:CDS |
| CAAAATTGTAGGTGTTGGTA+CGG | 0.502967 | 1_2:+55945445 | Msa0078420:intron |
| ATTCTGAATTGTCGGTGCTA+AGG | 0.504067 | 1_2:+55939676 | Msa0078420:five_prime_UTR |
| GAAGAGAAAGCTCAATCTCT+TGG | 0.505332 | 1_2:+55945222 | Msa0078420:CDS |
| AAAATTGGCACTCTCACTAA+AGG | 0.514236 | 1_2:+55945614 | Msa0078420:CDS |
| ATAAGCTTCCAGGCTAATCC+GGG | 0.514955 | 1_2:-55939961 | None:intergenic |
| GTGTGAAGTGAATAAATTCG+TGG | 0.517957 | 1_2:-55939576 | None:intergenic |
| AGTGTCACTAACATCTCCTC+GGG | 0.521835 | 1_2:-55944733 | None:intergenic |
| ATCAAGCATATAGCTTTACA+TGG | 0.523072 | 1_2:+55945871 | Msa0078420:three_prime_UTR |
| GCACTCTCACTAAAGGAAGC+TGG | 0.528422 | 1_2:+55945621 | Msa0078420:CDS |
| TCCTGATCATCCTGATACAC+CGG | 0.529879 | 1_2:+55940311 | Msa0078420:CDS |
| GGAATTTGGAGGAAGAAGAA+GGG | 0.532027 | 1_2:-55939602 | None:intergenic |
| AAGAGGAAGAACGTCTTGCA+AGG | 0.535723 | 1_2:+55945097 | Msa0078420:CDS |
| GAGGATCTCGTTGCAGAGGT+CGG | 0.536796 | 1_2:-55939782 | None:intergenic |
| AAGATGAGATGGCGAGTTCG+AGG | 0.537458 | 1_2:-55939822 | None:intergenic |
| GGAAGCTGGATTGCATCCTC+AGG | 0.540277 | 1_2:+55945635 | Msa0078420:CDS |
| ACTACCGGAAATAACGGAAA+CGG | 0.542934 | 1_2:-55939992 | None:intergenic |
| AAGTGTCACTAACATCTCCT+CGG | 0.548419 | 1_2:-55944734 | None:intergenic |
| GGAATATTCGTGCCAGTGAA+GGG | 0.549539 | 1_2:+55940406 | Msa0078420:CDS |
| TTCCAGGCTAATCCGGGTGG+TGG | 0.552711 | 1_2:-55939955 | None:intergenic |
| AACCAACGGCGTGCCAGCAG+AGG | 0.558001 | 1_2:-55940127 | None:intergenic |
| GTCGGTGGCGGTTGTTGTAG+TGG | 0.558855 | 1_2:-55939851 | None:intergenic |
| TAGAAGGACGCTTTGTTCGG+AGG | 0.560780 | 1_2:+55940341 | Msa0078420:CDS |
| GCTTACTTCCAAGCAATCAC+CGG | 0.561387 | 1_2:+55939748 | Msa0078420:CDS |
| GAGGTCGGGATCTTGTAAAC+CGG | 0.561487 | 1_2:-55939767 | None:intergenic |
| GCCATGACAAGAGCACAAAA+CGG | 0.562125 | 1_2:-55940465 | None:intergenic |
| ATCGCCGCCGTGAGGAGTGT+CGG | 0.565734 | 1_2:-55939869 | None:intergenic |
| TTTGAGAGGGATTATGGCGG+TGG | 0.568300 | 1_2:+55940195 | Msa0078420:CDS |
| CCTAGTCTCTAACTTCCCTC+GGG | 0.569165 | 1_2:+55945575 | Msa0078420:CDS |
| ACCGAGCTCCACAAACAGAC+TGG | 0.577057 | 1_2:-55945658 | None:intergenic |
| GCCGTGAGGAGTGTCGGTGG+CGG | 0.582211 | 1_2:-55939863 | None:intergenic |
| TGAGATTAACCCTAGACTAC+CGG | 0.583490 | 1_2:-55940007 | None:intergenic |
| GGTAGTCTAGGGTTAATCTC+AGG | 0.589893 | 1_2:+55940009 | Msa0078420:CDS |
| TGAAGCTGAGAGAAAGCTCA+AGG | 0.590929 | 1_2:+55945128 | Msa0078420:CDS |
| CAATCAGAACCACCACCACC+CGG | 0.591518 | 1_2:+55939943 | Msa0078420:CDS |
| AAGATGTGACCTGCAGATAG+GGG | 0.593089 | 1_2:+55945722 | Msa0078420:three_prime_UTR |
| GAGAAAGCTCAAGGAAGAAG+AGG | 0.595361 | 1_2:+55945137 | Msa0078420:CDS |
| TTTGTGGAGCTCGGTTCATG+AGG | 0.596829 | 1_2:+55945666 | Msa0078420:CDS |
| GTGTTGGTACGGTTTCCCAA+TGG | 0.600493 | 1_2:+55945456 | Msa0078420:CDS |
| CCCGAGGGAAGTTAGAGACT+AGG | 0.610507 | 1_2:-55945575 | None:intergenic |
| AGAGGAAGAACGTCTTGCAA+GGG | 0.610541 | 1_2:+55945098 | Msa0078420:CDS |
| AGATGTGACCTGCAGATAGG+GGG | 0.615889 | 1_2:+55945723 | Msa0078420:three_prime_UTR |
| ACCGCCACCGACACTCCTCA+CGG | 0.618587 | 1_2:+55939862 | Msa0078420:CDS |
| AGCGTCCTTCTACAAAACTC+CGG | 0.619964 | 1_2:-55940330 | None:intergenic |
| GGAACGGCAGAGAAGAGAAG+AGG | 0.621468 | 1_2:+55945080 | Msa0078420:CDS |
| TTGGAATCATCGCCGCCGTG+AGG | 0.624238 | 1_2:-55939877 | None:intergenic |
| CGGCGAGGATCTCGTTGCAG+AGG | 0.626530 | 1_2:-55939786 | None:intergenic |
| AAAGCTCAAGGAAGAAGAGG+AGG | 0.627771 | 1_2:+55945140 | Msa0078420:CDS |
| TATATGTTCAGGCTAGGGAA+CGG | 0.630989 | 1_2:+55945064 | Msa0078420:intron |
| GCCGCCGTGAGGAGTGTCGG+TGG | 0.632822 | 1_2:-55939866 | None:intergenic |
| TCTTGTCCGTAAACAACCCG+AGG | 0.633904 | 1_2:-55945591 | None:intergenic |
| TTTGGATTATGGGCTGCTGG+TGG | 0.636573 | 1_2:+55940042 | Msa0078420:CDS |
| AAAAGGACCTAATGTTACAC+AGG | 0.641329 | 1_2:+55945257 | Msa0078420:CDS |
| AGTGGTGGTGAAAGATGAGA+TGG | 0.648102 | 1_2:-55939833 | None:intergenic |
| TTATAGATAATAGATTGCTG+TGG | 0.652644 | 1_2:+55945810 | Msa0078420:three_prime_UTR |
| GATGTGACCTGCAGATAGGG+GGG | 0.655057 | 1_2:+55945724 | Msa0078420:three_prime_UTR |
| ATGGTGTGCGCAAAGAAAGG+AGG | 0.657288 | 1_2:+55945475 | Msa0078420:CDS |
| TCCACAAACAGACTGGCCTG+AGG | 0.673911 | 1_2:-55945651 | None:intergenic |
| GTAATAGTTTGAAGGCGTCG+AGG | 0.675844 | 1_2:+55940439 | Msa0078420:CDS |
| TTCGAGGTCCCAATTATGAG+CGG | 0.679111 | 1_2:-55939806 | None:intergenic |
| AGCTTCCAGGCTAATCCGGG+TGG | 0.686477 | 1_2:-55939958 | None:intergenic |
| CTTGTCCGTAAACAACCCGA+GGG | 0.687473 | 1_2:-55945590 | None:intergenic |
| GGTGGCGGTTGTTGTAGTGG+TGG | 0.688681 | 1_2:-55939848 | None:intergenic |
| GTGTCACTAACATCTCCTCG+GGG | 0.689574 | 1_2:-55944732 | None:intergenic |
| GTTTCATGGATGCGTTACAG+CGG | 0.696327 | 1_2:+55940247 | Msa0078420:CDS |
| CCTTGCTGCAACAAGAACTG+GGG | 0.706366 | 1_2:-55944779 | None:intergenic |
| GCAGCAGATACAGAAACCAA+CGG | 0.708973 | 1_2:-55940141 | None:intergenic |
| GGTCCCAATTATGAGCGGCG+AGG | 0.724899 | 1_2:-55939801 | None:intergenic |
| CAGACGATGAGTTTGGACCG+AGG | 0.750492 | 1_2:-55940095 | None:intergenic |
| TGTCACTAACATCTCCTCGG+GGG | 0.758406 | 1_2:-55944731 | None:intergenic |
| GCCACCGACACTCCTCACGG+CGG | 0.766256 | 1_2:+55939865 | Msa0078420:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTAAAAGATATATATACAT+GGG | - | chr1_2:55942028-55942047 | None:intergenic | 10.0% |
| !!! | TTTTAAAAGATATATATACA+TGG | - | chr1_2:55942029-55942048 | None:intergenic | 10.0% |
| !!! | AAAATTTTGTTAATAAGTTT+AGG | + | chr1_2:55942045-55942064 | Msa0078420:intron | 10.0% |
| !! | ATAATAATAAATATATCTAG+CGG | - | chr1_2:55942872-55942891 | None:intergenic | 10.0% |
| !!! | TTTTTTTTTTTTTTTCTTTC+AGG | + | chr1_2:55943527-55943546 | Msa0078420:intron | 10.0% |
| !!! | TTTTTTTTTTTTTTCTTTCA+GGG | + | chr1_2:55943528-55943547 | Msa0078420:intron | 10.0% |
| !!! | AAAATATTTTAAAGTGATAA+AGG | - | chr1_2:55944260-55944279 | None:intergenic | 10.0% |
| !!! | TAACTAAAATTCTAAGATAT+TGG | + | chr1_2:55939476-55939495 | Msa0078420:intron | 15.0% |
| !!! | AACTAAAATTCTAAGATATT+GGG | + | chr1_2:55939477-55939496 | Msa0078420:intron | 15.0% |
| !!! | TTATTTTATGTGTATGTATT+TGG | + | chr1_2:55940627-55940646 | Msa0078420:intron | 15.0% |
| !! | ATGGTAATAATTTAAGAAAA+TGG | - | chr1_2:55940885-55940904 | None:intergenic | 15.0% |
| !! | AGATAATTAAGATTCAAATT+TGG | + | chr1_2:55941085-55941104 | Msa0078420:intron | 15.0% |
| !! | TTTCTTAAAAACTAAAGATA+TGG | - | chr1_2:55942076-55942095 | None:intergenic | 15.0% |
| !! | ACATTAACATAAAAATTATG+AGG | + | chr1_2:55942358-55942377 | Msa0078420:intron | 15.0% |
| !! | AAAAAAAAAATAGAATGACA+CGG | - | chr1_2:55943517-55943536 | None:intergenic | 15.0% |
| !!! | ATTTTATTAGTTTTGTTGTT+TGG | + | chr1_2:55943864-55943883 | Msa0078420:intron | 15.0% |
| !! | AAACTACAATACTTAATAAT+TGG | - | chr1_2:55944480-55944499 | None:intergenic | 15.0% |
| !! | AAACTACAATACTTAATAAT+TGG | - | chr1_2:55944480-55944499 | None:intergenic | 15.0% |
| !!! | TTTTTTTTTTTTGTAGTGTA+TGG | + | chr1_2:55944908-55944927 | Msa0078420:intron | 15.0% |
| !! | AAAAAATGAGAAACTAAAAA+GGG | - | chr1_2:55945358-55945377 | None:intergenic | 15.0% |
| !!! | TTTTTAGTTTCTCATTTTTT+CGG | + | chr1_2:55945358-55945377 | Msa0078420:intron | 15.0% |
| !! | TATGTATTCATAAGATTATT+TGG | - | chr1_2:55945702-55945721 | None:intergenic | 15.0% |
| !! | AATTGAATTGAATTGGAATT+TGG | - | chr1_2:55939619-55939638 | None:intergenic | 20.0% |
| !!! | TTTTTTGATGTTGGATTTTT+TGG | + | chr1_2:55940538-55940557 | Msa0078420:intron | 20.0% |
| !!! | AACTAAAACTTGTTATAGTT+AGG | - | chr1_2:55940763-55940782 | None:intergenic | 20.0% |
| !! | GTAATAATTTAAGAAAATGG+AGG | - | chr1_2:55940882-55940901 | None:intergenic | 20.0% |
| !!! | GTCTTATTAACTAATTTTGT+TGG | + | chr1_2:55942186-55942205 | Msa0078420:intron | 20.0% |
| !! | ATGGTTTATTACACATAATA+TGG | + | chr1_2:55942707-55942726 | Msa0078420:intron | 20.0% |
| !! | TATTACACATAATATGGTTA+CGG | + | chr1_2:55942713-55942732 | Msa0078420:intron | 20.0% |
| !! | AGCATTATAATATTCAAACT+TGG | - | chr1_2:55943022-55943041 | None:intergenic | 20.0% |
| !! | AATGAAAAGTCAAAATAGAA+AGG | + | chr1_2:55943214-55943233 | Msa0078420:intron | 20.0% |
| !! | AAAAAAGATAACAACAATGT+TGG | - | chr1_2:55944222-55944241 | None:intergenic | 20.0% |
| !!! | AATTGTATATCATTTTTCTG+TGG | + | chr1_2:55944933-55944952 | Msa0078420:intron | 20.0% |
| !! | GAAAAAATGAGAAACTAAAA+AGG | - | chr1_2:55945359-55945378 | None:intergenic | 20.0% |
| !! | TGTTTCATTATGTATTAACT+TGG | + | chr1_2:55945390-55945409 | Msa0078420:intron | 20.0% |
| ! | TTGAATTGTGAATTGTGAAT+TGG | - | chr1_2:55939554-55939573 | None:intergenic | 25.0% |
| ! | GTGATTGAATTGAATTGAAT+TGG | - | chr1_2:55939626-55939645 | None:intergenic | 25.0% |
| !! | ATTGTTGTTGTTGTTGTTAT+TGG | - | chr1_2:55939899-55939918 | None:intergenic | 25.0% |
| ! | TAAGATGAGTAATAGTTTGA+AGG | + | chr1_2:55940431-55940450 | Msa0078420:CDS | 25.0% |
| !! | TCTTTTGCATTATATGTTTG+CGG | + | chr1_2:55940966-55940985 | Msa0078420:intron | 25.0% |
| !! | CTTTACACGTATTGATAAAT+CGG | - | chr1_2:55941067-55941086 | None:intergenic | 25.0% |
| ! | TAACAATCAAATTACAGAAG+TGG | - | chr1_2:55941314-55941333 | None:intergenic | 25.0% |
| ! | CTTCTGTAATTTGATTGTTA+TGG | + | chr1_2:55941314-55941333 | Msa0078420:intron | 25.0% |
| ! | ATAGAAGATACAGAAAGTTA+AGG | - | chr1_2:55941694-55941713 | None:intergenic | 25.0% |
| ! | TTTATCTGTTCGTAACAAAT+GGG | - | chr1_2:55941809-55941828 | None:intergenic | 25.0% |
| !! | TTTTATCTGTTCGTAACAAA+TGG | - | chr1_2:55941810-55941829 | None:intergenic | 25.0% |
| ! | TAAAAACTAAAGATATGGCA+CGG | - | chr1_2:55942071-55942090 | None:intergenic | 25.0% |
| ! | ATATCATACATCAAGCATTT+GGG | + | chr1_2:55942120-55942139 | Msa0078420:intron | 25.0% |
| ! | CGTAGAAATTTGAATTCAAT+CGG | + | chr1_2:55942388-55942407 | Msa0078420:intron | 25.0% |
| !! | ACACAACTTTTTGACAATAA+GGG | - | chr1_2:55942665-55942684 | None:intergenic | 25.0% |
| !! | TACACAACTTTTTGACAATA+AGG | - | chr1_2:55942666-55942685 | None:intergenic | 25.0% |
| ! | TGTTGTAAGATAGATATACA+TGG | + | chr1_2:55942688-55942707 | Msa0078420:intron | 25.0% |
| ! | TATTATAATGCTAGTAGCTT+AGG | + | chr1_2:55943030-55943049 | Msa0078420:intron | 25.0% |
| ! | ATGAGAGATGATATTATGAA+TGG | + | chr1_2:55943181-55943200 | Msa0078420:intron | 25.0% |
| ! | AGATGAAAAAATGGAAATCA+AGG | - | chr1_2:55943981-55944000 | None:intergenic | 25.0% |
| !! | TAAAATATTTTCCTCACTCT+CGG | + | chr1_2:55944269-55944288 | Msa0078420:intron | 25.0% |
| ! | TATGAAAATAGTACAGTCTA+GGG | - | chr1_2:55944572-55944591 | None:intergenic | 25.0% |
| ! | ATATGAAAATAGTACAGTCT+AGG | - | chr1_2:55944573-55944592 | None:intergenic | 25.0% |
| !!! | TATGACTATGTTGATTCATT+GGG | + | chr1_2:55945528-55945547 | Msa0078420:CDS | 25.0% |
| ! | TTATAGATAATAGATTGCTG+TGG | + | chr1_2:55945810-55945829 | Msa0078420:three_prime_UTR | 25.0% |
| ! | CATATATTATACTCTGTTTC+CGG | + | chr1_2:55945913-55945932 | Msa0078420:three_prime_UTR | 25.0% |
| TGAATTGAATTGGAATTTGG+AGG | - | chr1_2:55939616-55939635 | None:intergenic | 30.0% | |
| TCTTCTGAATTCTGAATTGT+CGG | + | chr1_2:55939668-55939687 | Msa0078420:five_prime_UTR | 30.0% | |
| ! | TGAATCAGAATTTTGTGTGT+TGG | + | chr1_2:55940379-55940398 | Msa0078420:CDS | 30.0% |
| ! | GAATCAGAATTTTGTGTGTT+GGG | + | chr1_2:55940380-55940399 | Msa0078420:CDS | 30.0% |
| ! | AATCAGAATTTTGTGTGTTG+GGG | + | chr1_2:55940381-55940400 | Msa0078420:CDS | 30.0% |
| !!! | TCTTTAGGCTTTTTTGATGT+TGG | + | chr1_2:55940529-55940548 | Msa0078420:intron | 30.0% |
| !!! | GTTGGATTTTTTGGTTGAAA+TGG | + | chr1_2:55940547-55940566 | Msa0078420:intron | 30.0% |
| ! | AGTTAATCCAAATCGCATTT+TGG | - | chr1_2:55940673-55940692 | None:intergenic | 30.0% |
| TTTAATGTAACCAGATGTGT+TGG | - | chr1_2:55940856-55940875 | None:intergenic | 30.0% | |
| AACACAGGAAATTAATCTGA+TGG | + | chr1_2:55940994-55941013 | Msa0078420:intron | 30.0% | |
| ACACAGGAAATTAATCTGAT+GGG | + | chr1_2:55940995-55941014 | Msa0078420:intron | 30.0% | |
| ! | AATTTTTCTCCTTGGCATAT+TGG | + | chr1_2:55941031-55941050 | Msa0078420:intron | 30.0% |
| ! | AGAACTAATTTGCCTAAAGT+GGG | - | chr1_2:55941432-55941451 | None:intergenic | 30.0% |
| ! | AAGAACTAATTTGCCTAAAG+TGG | - | chr1_2:55941433-55941452 | None:intergenic | 30.0% |
| ! | ATACCAAGTTGACTATTCAT+TGG | + | chr1_2:55941579-55941598 | Msa0078420:intron | 30.0% |
| ATACCAATGAATAGTCAACT+TGG | - | chr1_2:55941585-55941604 | None:intergenic | 30.0% | |
| TTGGTATTAGAGACAACAAA+TGG | + | chr1_2:55941598-55941617 | Msa0078420:intron | 30.0% | |
| TAATGAATTCTGTTTGCATG+AGG | - | chr1_2:55941780-55941799 | None:intergenic | 30.0% | |
| TACGAACAGATAAAAAGTGA+AGG | + | chr1_2:55941815-55941834 | Msa0078420:intron | 30.0% | |
| ATAACTGTATCAGTAGAAGA+TGG | - | chr1_2:55941930-55941949 | None:intergenic | 30.0% | |
| AATTCTTGTATTCTCATAGC+CGG | + | chr1_2:55942094-55942113 | Msa0078420:intron | 30.0% | |
| CATATCATACATCAAGCATT+TGG | + | chr1_2:55942119-55942138 | Msa0078420:intron | 30.0% | |
| !! | AATAATAACTTGCTGTGAGT+TGG | - | chr1_2:55942428-55942447 | None:intergenic | 30.0% |
| AAATGCAAACACACATATTG+GGG | - | chr1_2:55942496-55942515 | None:intergenic | 30.0% | |
| CAAATGCAAACACACATATT+GGG | - | chr1_2:55942497-55942516 | None:intergenic | 30.0% | |
| ACAAATGCAAACACACATAT+TGG | - | chr1_2:55942498-55942517 | None:intergenic | 30.0% | |
| ACAGTCTTGATCAATCATAA+TGG | - | chr1_2:55942538-55942557 | None:intergenic | 30.0% | |
| !! | TCCTGTGTTTTTCAAATTAG+CGG | - | chr1_2:55942841-55942860 | None:intergenic | 30.0% |
| ATAAATATATCTAGCGGTGT+CGG | - | chr1_2:55942866-55942885 | None:intergenic | 30.0% | |
| TACAAGTAAGCAACTTTAAG+AGG | - | chr1_2:55942986-55943005 | None:intergenic | 30.0% | |
| TATGTATTCCTAGTTTCTCA+CGG | - | chr1_2:55943075-55943094 | None:intergenic | 30.0% | |
| CAAAATAGAAAGGTTACAGA+AGG | + | chr1_2:55943224-55943243 | Msa0078420:intron | 30.0% | |
| ! | AAGGTTGATTCATATCAAAC+TGG | + | chr1_2:55943243-55943262 | Msa0078420:intron | 30.0% |
| ! | AGGTTGATTCATATCAAACT+GGG | + | chr1_2:55943244-55943263 | Msa0078420:intron | 30.0% |
| AAAGAAAGAAGCTCTATGTA+GGG | + | chr1_2:55943330-55943349 | Msa0078420:intron | 30.0% | |
| ! | ATGATGAATTGCTGTTCTTT+AGG | + | chr1_2:55943363-55943382 | Msa0078420:intron | 30.0% |
| ! | TGATGAATTGCTGTTCTTTA+GGG | + | chr1_2:55943364-55943383 | Msa0078420:intron | 30.0% |
| TTTCAAAACGATTGCTATGT+AGG | - | chr1_2:55943408-55943427 | None:intergenic | 30.0% | |
| TCAGATTCTGTTAAAAAACG+TGG | + | chr1_2:55943688-55943707 | Msa0078420:intron | 30.0% | |
| ATTCTGTTAAAAAACGTGGA+TGG | + | chr1_2:55943692-55943711 | Msa0078420:intron | 30.0% | |
| GAAAGAAAAAAAAAACAGCG+AGG | + | chr1_2:55943753-55943772 | Msa0078420:intron | 30.0% | |
| TAAATCTCCATGTTGTAAGT+AGG | - | chr1_2:55944110-55944129 | None:intergenic | 30.0% | |
| ATGGAGATTTACTTGATGTA+TGG | + | chr1_2:55944119-55944138 | Msa0078420:intron | 30.0% | |
| TGAATCAAACTGTTCATTTC+AGG | - | chr1_2:55944168-55944187 | None:intergenic | 30.0% | |
| AATGAACAGTTTGATTCATG+TGG | + | chr1_2:55944170-55944189 | Msa0078420:intron | 30.0% | |
| !!! | ATCTTTTTTGTTGATCAGCA+TGG | + | chr1_2:55944233-55944252 | Msa0078420:intron | 30.0% |
| TTATTTGTGGCACAATCATT+TGG | - | chr1_2:55944336-55944355 | None:intergenic | 30.0% | |
| GTTGATATTGAACCTATACA+TGG | - | chr1_2:55944370-55944389 | None:intergenic | 30.0% | |
| ! | ACATTCATTTTACTCAATCC+AGG | + | chr1_2:55944529-55944548 | Msa0078420:intron | 30.0% |
| ATGAAAATAGTACAGTCTAG+GGG | - | chr1_2:55944571-55944590 | None:intergenic | 30.0% | |
| ! | ACATTCATTTTACTGAATCC+AGG | + | chr1_2:55944693-55944712 | Msa0078420:intron | 30.0% |
| TTAATGCTGTGTATATGTTC+AGG | + | chr1_2:55945053-55945072 | Msa0078420:intron | 30.0% | |
| TACTTTACCTGTGTAACATT+AGG | - | chr1_2:55945267-55945286 | None:intergenic | 30.0% | |
| GGTTAAGATCTCACATAAAA+GGG | - | chr1_2:55945308-55945327 | None:intergenic | 30.0% | |
| AGGTTAAGATCTCACATAAA+AGG | - | chr1_2:55945309-55945328 | None:intergenic | 30.0% | |
| TCTTAACCTCAATTCATATG+TGG | + | chr1_2:55945320-55945339 | Msa0078420:intron | 30.0% | |
| !! | GTATGACTATGTTGATTCAT+TGG | + | chr1_2:55945527-55945546 | Msa0078420:CDS | 30.0% |
| TGTTTACGGACAAGAAAAAT+TGG | + | chr1_2:55945599-55945618 | Msa0078420:CDS | 30.0% | |
| ! | ATCAAGCATATAGCTTTACA+TGG | + | chr1_2:55945871-55945890 | Msa0078420:three_prime_UTR | 30.0% |
| !! | ATCTGGAACACATTTTTAAC+CGG | - | chr1_2:55945935-55945954 | None:intergenic | 30.0% |
| ! | AAAACCATACTCTAAAGATC+TGG | - | chr1_2:55945952-55945971 | None:intergenic | 30.0% |
| !!! | AGATCTTTAGAGTATGGTTT+TGG | + | chr1_2:55945951-55945970 | Msa0078420:three_prime_UTR | 30.0% |
| ACAATTAACAAACCAGTGAG+TGG | + | chr1_2:55939510-55939529 | Msa0078420:intron | 35.0% | |
| GTGTGAAGTGAATAAATTCG+TGG | - | chr1_2:55939579-55939598 | None:intergenic | 35.0% | |
| ! | TCTGCTACATCAGACATTTT+TGG | - | chr1_2:55939721-55939740 | None:intergenic | 35.0% |
| !!! | AGCAATCGGTTTTGGATTAT+GGG | + | chr1_2:55940032-55940051 | Msa0078420:CDS | 35.0% |
| !!! | AATTTGTAGCTGCTTTTGAG+AGG | + | chr1_2:55940181-55940200 | Msa0078420:CDS | 35.0% |
| !!! | ATTTGTAGCTGCTTTTGAGA+GGG | + | chr1_2:55940182-55940201 | Msa0078420:CDS | 35.0% |
| ACTCACAAAATTCGGCTTAA+AGG | - | chr1_2:55940223-55940242 | None:intergenic | 35.0% | |
| AAACCCTCACTCACAAAATT+CGG | - | chr1_2:55940231-55940250 | None:intergenic | 35.0% | |
| TTCAACAGGTATGGTTCTTT+AGG | + | chr1_2:55940514-55940533 | Msa0078420:intron | 35.0% | |
| TTGGTTGAAATGGATGCAAA+TGG | + | chr1_2:55940557-55940576 | Msa0078420:intron | 35.0% | |
| TGGTTGAAATGGATGCAAAT+GGG | + | chr1_2:55940558-55940577 | Msa0078420:intron | 35.0% | |
| !! | AATGGATGCAAATGGGTTAA+TGG | + | chr1_2:55940565-55940584 | Msa0078420:intron | 35.0% |
| !! | ATGGATGCAAATGGGTTAAT+GGG | + | chr1_2:55940566-55940585 | Msa0078420:intron | 35.0% |
| !! | GGGTGTTATGTTTTTGTGTT+TGG | + | chr1_2:55940587-55940606 | Msa0078420:intron | 35.0% |
| TTATTACCATGTCTACGTGT+TGG | + | chr1_2:55940895-55940914 | Msa0078420:intron | 35.0% | |
| TTTGCATTATATGTTTGCGG+TGG | + | chr1_2:55940969-55940988 | Msa0078420:intron | 35.0% | |
| ! | TTCCTGTGAATTTTTCTCCT+TGG | + | chr1_2:55941023-55941042 | Msa0078420:intron | 35.0% |
| ! | TTAGAAAGTGACTGTTTCTC+TGG | + | chr1_2:55941219-55941238 | Msa0078420:intron | 35.0% |
| TCAAATTACAGAAGTGGAGA+AGG | - | chr1_2:55941308-55941327 | None:intergenic | 35.0% | |
| AATAGTGCAAACAAGAGTGA+AGG | - | chr1_2:55941535-55941554 | None:intergenic | 35.0% | |
| !! | TATGACTTGGTCAAAGAGAA+AGG | - | chr1_2:55941737-55941756 | None:intergenic | 35.0% |
| ATTCTTGTATTCTCATAGCC+GGG | + | chr1_2:55942095-55942114 | Msa0078420:intron | 35.0% | |
| TAGTTAATAAGACATCCCTG+TGG | - | chr1_2:55942179-55942198 | None:intergenic | 35.0% | |
| ATACCCTTACTTCAAGAGTA+AGG | - | chr1_2:55942472-55942491 | None:intergenic | 35.0% | |
| AATGCAAACACACATATTGG+GGG | - | chr1_2:55942495-55942514 | None:intergenic | 35.0% | |
| GATTGATCAAGACTGTATGT+TGG | + | chr1_2:55942542-55942561 | Msa0078420:intron | 35.0% | |
| TGTATTTCCTTTCTTAGCTC+AGG | + | chr1_2:55942592-55942611 | Msa0078420:intron | 35.0% | |
| GTTGAGTGCTAATAATTGAG+TGG | + | chr1_2:55942630-55942649 | Msa0078420:intron | 35.0% | |
| !!! | TAGTTTTAGCCTTAGTCTCA+TGG | + | chr1_2:55942769-55942788 | Msa0078420:intron | 35.0% |
| ACCGCTAATTTGAAAAACAC+AGG | + | chr1_2:55942837-55942856 | Msa0078420:intron | 35.0% | |
| ! | AAGTAAGCAACTTTAAGAGG+TGG | - | chr1_2:55942983-55943002 | None:intergenic | 35.0% |
| CTCATCTCTCGCAATATAAT+AGG | - | chr1_2:55943166-55943185 | None:intergenic | 35.0% | |
| GAAAGAAAGAAGCTCTATGT+AGG | + | chr1_2:55943329-55943348 | Msa0078420:intron | 35.0% | |
| CCAAAGAAAAGTAGAACAGT+GGG | - | chr1_2:55943435-55943454 | None:intergenic | 35.0% | |
| !! | CCACTGTTCTACTTTTCTTT+GGG | + | chr1_2:55943433-55943452 | Msa0078420:intron | 35.0% |
| !! | CACTGTTCTACTTTTCTTTG+GGG | + | chr1_2:55943434-55943453 | Msa0078420:intron | 35.0% |
| TAAGTGTCTCTCTCTAATGA+CGG | + | chr1_2:55943805-55943824 | Msa0078420:intron | 35.0% | |
| !! | AATGACGGGTAAATGATTAC+AGG | + | chr1_2:55943820-55943839 | Msa0078420:intron | 35.0% |
| !! | ATGACGGGTAAATGATTACA+GGG | + | chr1_2:55943821-55943840 | Msa0078420:intron | 35.0% |
| !! | GCAGGTTCTAGATGAAAAAA+TGG | - | chr1_2:55943990-55944009 | None:intergenic | 35.0% |
| CAGTTGCTGCTATATGATAA+CGG | - | chr1_2:55944081-55944100 | None:intergenic | 35.0% | |
| ATATTTCATAACCGAGAGTG+AGG | - | chr1_2:55944283-55944302 | None:intergenic | 35.0% | |
| CTCTCGGTTATGAAATATCT+AGG | + | chr1_2:55944285-55944304 | Msa0078420:intron | 35.0% | |
| TTGTGCCACAAATAACTTCA+TGG | + | chr1_2:55944341-55944360 | Msa0078420:intron | 35.0% | |
| GGTTACCATGAAGTTATTTG+TGG | - | chr1_2:55944349-55944368 | None:intergenic | 35.0% | |
| ACTTCATGGTAACCATGTAT+AGG | + | chr1_2:55944355-55944374 | Msa0078420:intron | 35.0% | |
| AAATAGTAGTCTCGAATCTC+AGG | - | chr1_2:55944403-55944422 | None:intergenic | 35.0% | |
| !! | TTTTACTCAATCCAGGTTGA+AGG | + | chr1_2:55944536-55944555 | Msa0078420:intron | 35.0% |
| TGAAAATAGTACAGTCTAGG+GGG | - | chr1_2:55944570-55944589 | None:intergenic | 35.0% | |
| !! | TTTTACTGAATCCAGGTTGA+AGG | + | chr1_2:55944700-55944719 | Msa0078420:intron | 35.0% |
| ACAGGGAAAAACACAAATCA+TGG | - | chr1_2:55944967-55944986 | None:intergenic | 35.0% | |
| CCAAATAAAAGCCTAAGCAA+GGG | - | chr1_2:55945002-55945021 | None:intergenic | 35.0% | |
| !! | CCTTGCTTAGGCTTTTATTT+GGG | + | chr1_2:55945000-55945019 | Msa0078420:intron | 35.0% |
| !! | GGCTTTTATTTGGGAAATCT+TGG | + | chr1_2:55945009-55945028 | Msa0078420:intron | 35.0% |
| ! | GTAACATTAGGTCCTTTTTC+AGG | - | chr1_2:55945255-55945274 | None:intergenic | 35.0% |
| AAAAGGACCTAATGTTACAC+AGG | + | chr1_2:55945257-55945276 | Msa0078420:CDS | 35.0% | |
| GGTAAACCACATATGAATTG+AGG | - | chr1_2:55945329-55945348 | None:intergenic | 35.0% | |
| AGAAACTAAAAAGGGAGTGA+AGG | - | chr1_2:55945350-55945369 | None:intergenic | 35.0% | |
| !!! | CCTACAATTTTGATTGGAAG+TGG | - | chr1_2:55945437-55945456 | None:intergenic | 35.0% |
| CCACTTCCAATCAAAATTGT+AGG | + | chr1_2:55945434-55945453 | Msa0078420:intron | 35.0% | |
| !! | CCAACACCTACAATTTTGAT+TGG | - | chr1_2:55945443-55945462 | None:intergenic | 35.0% |
| CCAATCAAAATTGTAGGTGT+TGG | + | chr1_2:55945440-55945459 | Msa0078420:intron | 35.0% | |
| !! | CAAAATTGTAGGTGTTGGTA+CGG | + | chr1_2:55945445-55945464 | Msa0078420:intron | 35.0% |
| AAAATTGGCACTCTCACTAA+AGG | + | chr1_2:55945614-55945633 | Msa0078420:CDS | 35.0% | |
| !! | TGTTCCAGATCTTTAGAGTA+TGG | + | chr1_2:55945945-55945964 | Msa0078420:three_prime_UTR | 35.0% |
| !! | TTCTAAGATATTGGGTCAGC+AGG | + | chr1_2:55939485-55939504 | Msa0078420:intron | 40.0% |
| GGAATTTGGAGGAAGAAGAA+GGG | - | chr1_2:55939605-55939624 | None:intergenic | 40.0% | |
| TGGAATTTGGAGGAAGAAGA+AGG | - | chr1_2:55939606-55939625 | None:intergenic | 40.0% | |
| !! | ATTCTGAATTGTCGGTGCTA+AGG | + | chr1_2:55939676-55939695 | Msa0078420:five_prime_UTR | 40.0% |
| !! | TTCTGAATTGTCGGTGCTAA+GGG | + | chr1_2:55939677-55939696 | Msa0078420:five_prime_UTR | 40.0% |
| TTCTGATTGGGATGACGATT+GGG | - | chr1_2:55939932-55939951 | None:intergenic | 40.0% | |
| GGGTAATTTGATAAGCTTCC+AGG | - | chr1_2:55939974-55939993 | None:intergenic | 40.0% | |
| ! | TTACCCGTTTCCGTTATTTC+CGG | + | chr1_2:55939988-55940007 | Msa0078420:CDS | 40.0% |
| ! | ACTACCGGAAATAACGGAAA+CGG | - | chr1_2:55939995-55940014 | None:intergenic | 40.0% |
| TGAGATTAACCCTAGACTAC+CGG | - | chr1_2:55940010-55940029 | None:intergenic | 40.0% | |
| !!! | GAGCAATCGGTTTTGGATTA+TGG | + | chr1_2:55940031-55940050 | Msa0078420:CDS | 40.0% |
| GGTGTTCTTTCATATTCGCT+TGG | + | chr1_2:55940063-55940082 | Msa0078420:CDS | 40.0% | |
| ! | TAAGCCGAATTTTGTGAGTG+AGG | + | chr1_2:55940224-55940243 | Msa0078420:CDS | 40.0% |
| ! | AAGCCGAATTTTGTGAGTGA+GGG | + | chr1_2:55940225-55940244 | Msa0078420:CDS | 40.0% |
| ! | TTTTGTGAGTGAGGGTTTCA+TGG | + | chr1_2:55940233-55940252 | Msa0078420:CDS | 40.0% |
| !! | ATACACCGGAGTTTTGTAGA+AGG | + | chr1_2:55940325-55940344 | Msa0078420:CDS | 40.0% |
| ! | TTGTAGAAGGACGCTTTGTT+CGG | + | chr1_2:55940338-55940357 | Msa0078420:CDS | 40.0% |
| ! | AGAATTTTGTGTGTTGGGGT+GGG | + | chr1_2:55940385-55940404 | Msa0078420:CDS | 40.0% |
| ACTCATCTTAAACCCTTCAC+TGG | - | chr1_2:55940421-55940440 | None:intergenic | 40.0% | |
| !! | TGGATGCAAATGGGTTAATG+GGG | + | chr1_2:55940567-55940586 | Msa0078420:intron | 40.0% |
| !! | AACCAGATGTGTTGGTGTTA+GGG | - | chr1_2:55940848-55940867 | None:intergenic | 40.0% |
| ! | TAACCAGATGTGTTGGTGTT+AGG | - | chr1_2:55940849-55940868 | None:intergenic | 40.0% |
| GATACCTACGAAACACCAAA+GGG | - | chr1_2:55940942-55940961 | None:intergenic | 40.0% | |
| TGATACCTACGAAACACCAA+AGG | - | chr1_2:55940943-55940962 | None:intergenic | 40.0% | |
| TGCCAAGGAGAAAAATTCAC+AGG | - | chr1_2:55941028-55941047 | None:intergenic | 40.0% | |
| TCACTTTCTAAATCACGCAG+GGG | - | chr1_2:55941210-55941229 | None:intergenic | 40.0% | |
| ! | GTCACTTTCTAAATCACGCA+GGG | - | chr1_2:55941211-55941230 | None:intergenic | 40.0% |
| ! | AGTCACTTTCTAAATCACGC+AGG | - | chr1_2:55941212-55941231 | None:intergenic | 40.0% |
| AATTACAGAAGTGGAGAAGG+AGG | - | chr1_2:55941305-55941324 | None:intergenic | 40.0% | |
| CTGATTGATTGTCCCACTTT+AGG | + | chr1_2:55941417-55941436 | Msa0078420:intron | 40.0% | |
| ! | AGAGAGTTCAAGGTGTCATA+GGG | - | chr1_2:55941493-55941512 | None:intergenic | 40.0% |
| ! | AAGAGAGTTCAAGGTGTCAT+AGG | - | chr1_2:55941494-55941513 | None:intergenic | 40.0% |
| AGAAAGGCAAAGAGAGTTCA+AGG | - | chr1_2:55941503-55941522 | None:intergenic | 40.0% | |
| AAACAAGAGTGAAGGTAGGT+AGG | - | chr1_2:55941527-55941546 | None:intergenic | 40.0% | |
| TCAACTTGGTATTAGAGACC+CGG | - | chr1_2:55941571-55941590 | None:intergenic | 40.0% | |
| AAATCATTCCTCTTGTGCCT+AGG | - | chr1_2:55941670-55941689 | None:intergenic | 40.0% | |
| GATGGTCAACATGTAGATAC+AGG | - | chr1_2:55941912-55941931 | None:intergenic | 40.0% | |
| GCTTGATGTATGATATGACC+CGG | - | chr1_2:55942116-55942135 | None:intergenic | 40.0% | |
| TGGGAATCTATTTACTCCAC+AGG | + | chr1_2:55942160-55942179 | Msa0078420:intron | 40.0% | |
| GGGAATCTATTTACTCCACA+GGG | + | chr1_2:55942161-55942180 | Msa0078420:intron | 40.0% | |
| ACGCCTTACTCTTGAAGTAA+GGG | + | chr1_2:55942466-55942485 | Msa0078420:intron | 40.0% | |
| ! | CAAGACTGTATGTTGGTTGT+CGG | + | chr1_2:55942549-55942568 | Msa0078420:intron | 40.0% |
| CTACAAATGCCATGAGACTA+AGG | - | chr1_2:55942781-55942800 | None:intergenic | 40.0% | |
| CTTAGTCTCATGGCATTTGT+AGG | + | chr1_2:55942779-55942798 | Msa0078420:intron | 40.0% | |
| CATTTGTAGGCTATGAAGCA+CGG | + | chr1_2:55942792-55942811 | Msa0078420:intron | 40.0% | |
| ! | CAACTTTAAGAGGTGGAGTT+TGG | - | chr1_2:55942976-55942995 | None:intergenic | 40.0% |
| CTTCTTTCTTTCCTGTCATG+TGG | - | chr1_2:55943321-55943340 | None:intergenic | 40.0% | |
| !! | CCCACTGTTCTACTTTTCTT+TGG | + | chr1_2:55943432-55943451 | Msa0078420:intron | 40.0% |
| CCCAAAGAAAAGTAGAACAG+TGG | - | chr1_2:55943436-55943455 | None:intergenic | 40.0% | |
| AGAGAGACACTTAACGCATT+GGG | - | chr1_2:55943798-55943817 | None:intergenic | 40.0% | |
| AAGTGTCTCTCTCTAATGAC+GGG | + | chr1_2:55943806-55943825 | Msa0078420:intron | 40.0% | |
| GATTACCACTTTCCGACATT+AGG | + | chr1_2:55943886-55943905 | Msa0078420:intron | 40.0% | |
| CTTCTTACGAGTCCTAATGT+CGG | - | chr1_2:55943901-55943920 | None:intergenic | 40.0% | |
| TCACTACAACCTCAAAGCTA+TGG | - | chr1_2:55943931-55943950 | None:intergenic | 40.0% | |
| ! | TCATCTAGAACCTGCTTTCT+AGG | + | chr1_2:55943995-55944014 | Msa0078420:intron | 40.0% |
| ! | CATCTAGAACCTGCTTTCTA+GGG | + | chr1_2:55943996-55944015 | Msa0078420:intron | 40.0% |
| ! | CTCTCAAGAGAGTTTTCTCA+TGG | - | chr1_2:55944046-55944065 | None:intergenic | 40.0% |
| CGTTATCATATAGCAGCAAC+TGG | + | chr1_2:55944079-55944098 | Msa0078420:intron | 40.0% | |
| GGTGTTTCCTACTTACAACA+TGG | + | chr1_2:55944100-55944119 | Msa0078420:intron | 40.0% | |
| GTTCATTTCAGGCTACTGAA+TGG | - | chr1_2:55944157-55944176 | None:intergenic | 40.0% | |
| ! | AAGTGTCACTAACATCTCCT+CGG | - | chr1_2:55944737-55944756 | None:intergenic | 40.0% |
| ACGAACTAATGCACGCTTAA+GGG | + | chr1_2:55944819-55944838 | Msa0078420:CDS | 40.0% | |
| AAGAGCAAGATGCTGCATAT+AGG | + | chr1_2:55944842-55944861 | Msa0078420:CDS | 40.0% | |
| AGAGCAAGATGCTGCATATA+GGG | + | chr1_2:55944843-55944862 | Msa0078420:CDS | 40.0% | |
| ! | AAGGGAACAAGTTGAGAACA+GGG | - | chr1_2:55944984-55945003 | None:intergenic | 40.0% |
| ! | CCCTTGCTTAGGCTTTTATT+TGG | + | chr1_2:55944999-55945018 | Msa0078420:intron | 40.0% |
| CCCAAATAAAAGCCTAAGCA+AGG | - | chr1_2:55945003-55945022 | None:intergenic | 40.0% | |
| CTGTGTATATGTTCAGGCTA+GGG | + | chr1_2:55945059-55945078 | Msa0078420:intron | 40.0% | |
| TATATGTTCAGGCTAGGGAA+CGG | + | chr1_2:55945064-55945083 | Msa0078420:intron | 40.0% | |
| GAAGAGAAAGCTCAATCTCT+TGG | + | chr1_2:55945222-55945241 | Msa0078420:CDS | 40.0% | |
| CTTGGTGAAGAACCTGAAAA+AGG | + | chr1_2:55945240-55945259 | Msa0078420:CDS | 40.0% | |
| TAAAGATGTGACCTGCAGAT+AGG | + | chr1_2:55945720-55945739 | Msa0078420:three_prime_UTR | 40.0% | |
| AAAGATGTGACCTGCAGATA+GGG | + | chr1_2:55945721-55945740 | Msa0078420:three_prime_UTR | 40.0% | |
| AACAAACCAGTGAGTGGATG+TGG | + | chr1_2:55939516-55939535 | Msa0078420:intron | 45.0% | |
| GCTTACTTCCAAGCAATCAC+CGG | + | chr1_2:55939748-55939767 | Msa0078420:CDS | 45.0% | |
| CTTGTAAACCGGTGATTGCT+TGG | - | chr1_2:55939759-55939778 | None:intergenic | 45.0% | |
| TTCGAGGTCCCAATTATGAG+CGG | - | chr1_2:55939809-55939828 | None:intergenic | 45.0% | |
| ! | AGTGGTGGTGAAAGATGAGA+TGG | - | chr1_2:55939836-55939855 | None:intergenic | 45.0% |
| GTTCTGATTGGGATGACGAT+TGG | - | chr1_2:55939933-55939952 | None:intergenic | 45.0% | |
| ATAAGCTTCCAGGCTAATCC+GGG | - | chr1_2:55939964-55939983 | None:intergenic | 45.0% | |
| GATAAGCTTCCAGGCTAATC+CGG | - | chr1_2:55939965-55939984 | None:intergenic | 45.0% | |
| ! | CTACCGGAAATAACGGAAAC+GGG | - | chr1_2:55939994-55940013 | None:intergenic | 45.0% |
| ! | TCCGTTATTTCCGGTAGTCT+AGG | + | chr1_2:55939997-55940016 | Msa0078420:CDS | 45.0% |
| CCCTAGACTACCGGAAATAA+CGG | - | chr1_2:55940001-55940020 | None:intergenic | 45.0% | |
| ! | CCGTTATTTCCGGTAGTCTA+GGG | + | chr1_2:55939998-55940017 | Msa0078420:CDS | 45.0% |
| ! | GGTAGTCTAGGGTTAATCTC+AGG | + | chr1_2:55940009-55940028 | Msa0078420:CDS | 45.0% |
| GGGTTAATCTCAGGAGCAAT+CGG | + | chr1_2:55940018-55940037 | Msa0078420:CDS | 45.0% | |
| !! | ATCTCAGGAGCAATCGGTTT+TGG | + | chr1_2:55940024-55940043 | Msa0078420:CDS | 45.0% |
| TCATATTCGCTTGGCTTCGT+CGG | + | chr1_2:55940072-55940091 | Msa0078420:CDS | 45.0% | |
| GCAGCAGATACAGAAACCAA+CGG | - | chr1_2:55940144-55940163 | None:intergenic | 45.0% | |
| !!! | GCTGCTTTTGAGAGGGATTA+TGG | + | chr1_2:55940189-55940208 | Msa0078420:CDS | 45.0% |
| !! | GCTTTTGAGAGGGATTATGG+CGG | + | chr1_2:55940192-55940211 | Msa0078420:CDS | 45.0% |
| GTTTCATGGATGCGTTACAG+CGG | + | chr1_2:55940247-55940266 | Msa0078420:CDS | 45.0% | |
| TCCTGATCATCCTGATACAC+CGG | + | chr1_2:55940311-55940330 | Msa0078420:CDS | 45.0% | |
| CTACAAAACTCCGGTGTATC+AGG | - | chr1_2:55940324-55940343 | None:intergenic | 45.0% | |
| AGCGTCCTTCTACAAAACTC+CGG | - | chr1_2:55940333-55940352 | None:intergenic | 45.0% | |
| !! | GCTTTGTTCGGAGGTTTTTG+TGG | + | chr1_2:55940350-55940369 | Msa0078420:CDS | 45.0% |
| ! | CAGAATTTTGTGTGTTGGGG+TGG | + | chr1_2:55940384-55940403 | Msa0078420:CDS | 45.0% |
| GGAATATTCGTGCCAGTGAA+GGG | + | chr1_2:55940406-55940425 | Msa0078420:CDS | 45.0% | |
| !! | GTAATAGTTTGAAGGCGTCG+AGG | + | chr1_2:55940439-55940458 | Msa0078420:CDS | 45.0% |
| ! | TCCGTTTTGTGCTCTTGTCA+TGG | + | chr1_2:55940464-55940483 | Msa0078420:CDS | 45.0% |
| ! | GCCATGACAAGAGCACAAAA+CGG | - | chr1_2:55940468-55940487 | None:intergenic | 45.0% |
| CACGTGTCCAAAATGCGATT+TGG | + | chr1_2:55940663-55940682 | Msa0078420:intron | 45.0% | |
| ACAACACCAACACGTAGACA+TGG | - | chr1_2:55940904-55940923 | None:intergenic | 45.0% | |
| ATGTTTGCGGTGGATAACAC+AGG | + | chr1_2:55940979-55940998 | Msa0078420:intron | 45.0% | |
| CAGGTGTATCCAATATGCCA+AGG | - | chr1_2:55941043-55941062 | None:intergenic | 45.0% | |
| CTTGGCATATTGGATACACC+TGG | + | chr1_2:55941041-55941060 | Msa0078420:intron | 45.0% | |
| ! | CACGTATTGATAAATCGGCC+AGG | - | chr1_2:55941062-55941081 | None:intergenic | 45.0% |
| CAGCTTTCTGTATAACGCGA+AGG | - | chr1_2:55941276-55941295 | None:intergenic | 45.0% | |
| AAGAAAGCTGTGGGGAATTG+TGG | - | chr1_2:55941370-55941389 | None:intergenic | 45.0% | |
| AGAGACAGAAGAAAGCTGTG+GGG | - | chr1_2:55941378-55941397 | None:intergenic | 45.0% | |
| CAGAGACAGAAGAAAGCTGT+GGG | - | chr1_2:55941379-55941398 | None:intergenic | 45.0% | |
| ACAGAGACAGAAGAAAGCTG+TGG | - | chr1_2:55941380-55941399 | None:intergenic | 45.0% | |
| CAATGGAGAGACGCAAATGA+TGG | - | chr1_2:55941467-55941486 | None:intergenic | 45.0% | |
| ! | AAGGTGTCATAGGGAGTCAA+TGG | - | chr1_2:55941484-55941503 | None:intergenic | 45.0% |
| GTGAAGGTAGGTAGGAAGAA+AGG | - | chr1_2:55941519-55941538 | None:intergenic | 45.0% | |
| GTGCAAACAAGAGTGAAGGT+AGG | - | chr1_2:55941531-55941550 | None:intergenic | 45.0% | |
| ACTATTCACGTATCACCGAC+CGG | + | chr1_2:55941549-55941568 | Msa0078420:intron | 45.0% | |
| ATCAAGATCCTAGGCACAAG+AGG | + | chr1_2:55941659-55941678 | Msa0078420:intron | 45.0% | |
| TTGACCAAGTCATACTTCCC+CGG | + | chr1_2:55941743-55941762 | Msa0078420:intron | 45.0% | |
| TTCTGTTTGCATGAGGACTG+AGG | - | chr1_2:55941773-55941792 | None:intergenic | 45.0% | |
| CACGCCTTACTCTTGAAGTA+AGG | + | chr1_2:55942465-55942484 | Msa0078420:intron | 45.0% | |
| AATACAGACGCGCATATGTG+CGG | - | chr1_2:55942578-55942597 | None:intergenic | 45.0% | |
| GGGCAAAGAGAGAATTTCAG+AGG | + | chr1_2:55943264-55943283 | Msa0078420:intron | 45.0% | |
| ATATGACGCTTGTCAGATGC+TGG | - | chr1_2:55943562-55943581 | None:intergenic | 45.0% | |
| GCATCTGACAAGCGTCATAT+CGG | + | chr1_2:55943562-55943581 | Msa0078420:intron | 45.0% | |
| AACGTGGATGGAAAAAGCCA+TGG | + | chr1_2:55943704-55943723 | Msa0078420:intron | 45.0% | |
| ACGTGGATGGAAAAAGCCAT+GGG | + | chr1_2:55943705-55943724 | Msa0078420:intron | 45.0% | |
| AAAAGCCATGGGGACTAAGT+AGG | + | chr1_2:55943716-55943735 | Msa0078420:intron | 45.0% | |
| GAGAGAGACACTTAACGCAT+TGG | - | chr1_2:55943799-55943818 | None:intergenic | 45.0% | |
| ! | AGTCCATCTCCATAGCTTTG+AGG | + | chr1_2:55943919-55943938 | Msa0078420:intron | 45.0% |
| CAACCTCAAAGCTATGGAGA+TGG | - | chr1_2:55943925-55943944 | None:intergenic | 45.0% | |
| TTGCTCTATCCCTAGAAAGC+AGG | - | chr1_2:55944008-55944027 | None:intergenic | 45.0% | |
| ! | AGTACAGTCTAGGGGGATTT+TGG | - | chr1_2:55944563-55944582 | None:intergenic | 45.0% |
| ! | AGTGTCACTAACATCTCCTC+GGG | - | chr1_2:55944736-55944755 | None:intergenic | 45.0% |
| GACGAACTAATGCACGCTTA+AGG | + | chr1_2:55944818-55944837 | Msa0078420:CDS | 45.0% | |
| ! | CAAGGGAACAAGTTGAGAAC+AGG | - | chr1_2:55944985-55945004 | None:intergenic | 45.0% |
| ! | CTCAACTTGTTCCCTTGCTT+AGG | + | chr1_2:55944988-55945007 | Msa0078420:intron | 45.0% |
| GCTGTGTATATGTTCAGGCT+AGG | + | chr1_2:55945058-55945077 | Msa0078420:intron | 45.0% | |
| AAGAGGAAGAACGTCTTGCA+AGG | + | chr1_2:55945097-55945116 | Msa0078420:CDS | 45.0% | |
| AGAGGAAGAACGTCTTGCAA+GGG | + | chr1_2:55945098-55945117 | Msa0078420:CDS | 45.0% | |
| TGAAGCTGAGAGAAAGCTCA+AGG | + | chr1_2:55945128-55945147 | Msa0078420:CDS | 45.0% | |
| GAGAAAGCTCAAGGAAGAAG+AGG | + | chr1_2:55945137-55945156 | Msa0078420:CDS | 45.0% | |
| AAAGCTCAAGGAAGAAGAGG+AGG | + | chr1_2:55945140-55945159 | Msa0078420:CDS | 45.0% | |
| CTTTCTTTGCGCACACCATT+GGG | - | chr1_2:55945474-55945493 | None:intergenic | 45.0% | |
| ! | AACTTCCCTCGGGTTGTTTA+CGG | + | chr1_2:55945585-55945604 | Msa0078420:CDS | 45.0% |
| AAGATGTGACCTGCAGATAG+GGG | + | chr1_2:55945722-55945741 | Msa0078420:three_prime_UTR | 45.0% | |
| TATCGACCACATCCACTCAC+TGG | - | chr1_2:55939525-55939544 | None:intergenic | 50.0% | |
| GAGGTCGGGATCTTGTAAAC+CGG | - | chr1_2:55939770-55939789 | None:intergenic | 50.0% | |
| AGATCCTCGCCGCTCATAAT+TGG | + | chr1_2:55939797-55939816 | Msa0078420:CDS | 50.0% | |
| GATCCTCGCCGCTCATAATT+GGG | + | chr1_2:55939798-55939817 | Msa0078420:CDS | 50.0% | |
| AAGATGAGATGGCGAGTTCG+AGG | - | chr1_2:55939825-55939844 | None:intergenic | 50.0% | |
| !!! | GGTTTTGGATTATGGGCTGC+TGG | + | chr1_2:55940039-55940058 | Msa0078420:CDS | 50.0% |
| ! | TTTGGATTATGGGCTGCTGG+TGG | + | chr1_2:55940042-55940061 | Msa0078420:CDS | 50.0% |
| TTTGAGAGGGATTATGGCGG+TGG | + | chr1_2:55940195-55940214 | Msa0078420:CDS | 50.0% | |
| TCCGGTGTATCAGGATGATC+AGG | - | chr1_2:55940315-55940334 | None:intergenic | 50.0% | |
| ! | TAGAAGGACGCTTTGTTCGG+AGG | + | chr1_2:55940341-55940360 | Msa0078420:CDS | 50.0% |
| GGGAATATTCGTGCCAGTGA+AGG | + | chr1_2:55940405-55940424 | Msa0078420:CDS | 50.0% | |
| GAGAATCGCGCTTCTTCAAC+AGG | + | chr1_2:55940500-55940519 | Msa0078420:CDS | 50.0% | |
| TCGCGCTTCTTCAACAGGTA+TGG | + | chr1_2:55940505-55940524 | Msa0078420:intron | 50.0% | |
| TGCCCTAACACCAACACATC+TGG | + | chr1_2:55940843-55940862 | Msa0078420:intron | 50.0% | |
| GTCTGCTGTATGTGTCCCTT+TGG | + | chr1_2:55940924-55940943 | Msa0078420:intron | 50.0% | |
| !! | GTGTCCCTTTGGTGTTTCGT+AGG | + | chr1_2:55940935-55940954 | Msa0078420:intron | 50.0% |
| ! | CAGGGGCACAGTAAATACAG+GGG | - | chr1_2:55941193-55941212 | None:intergenic | 50.0% |
| ! | GCAGGGGCACAGTAAATACA+GGG | - | chr1_2:55941194-55941213 | None:intergenic | 50.0% |
| TTGTGGTTAGGAGGCTGGAA+GGG | - | chr1_2:55941353-55941372 | None:intergenic | 50.0% | |
| ATTGTGGTTAGGAGGCTGGA+AGG | - | chr1_2:55941354-55941373 | None:intergenic | 50.0% | |
| TGTGGGGAATTGTGGTTAGG+AGG | - | chr1_2:55941362-55941381 | None:intergenic | 50.0% | |
| AGCTGTGGGGAATTGTGGTT+AGG | - | chr1_2:55941365-55941384 | None:intergenic | 50.0% | |
| ! | GGAGAGACGCAAATGATGGA+CGG | - | chr1_2:55941463-55941482 | None:intergenic | 50.0% |
| CTATTCACGTATCACCGACC+GGG | + | chr1_2:55941550-55941569 | Msa0078420:intron | 50.0% | |
| CTTGGTATTAGAGACCCGGT+CGG | - | chr1_2:55941567-55941586 | None:intergenic | 50.0% | |
| GAGAGAGCTCTTGACTAGCA+GGG | + | chr1_2:55941620-55941639 | Msa0078420:intron | 50.0% | |
| AGAGAGCTCTTGACTAGCAG+GGG | + | chr1_2:55941621-55941640 | Msa0078420:intron | 50.0% | |
| CCTAGGATCTTGATGTCAGG+AGG | - | chr1_2:55941653-55941672 | None:intergenic | 50.0% | |
| CCTCCTGACATCAAGATCCT+AGG | + | chr1_2:55941650-55941669 | Msa0078420:intron | 50.0% | |
| GTGCCTAGGATCTTGATGTC+AGG | - | chr1_2:55941656-55941675 | None:intergenic | 50.0% | |
| ! | AGAAAGGTGCGTGACAGAGA+GGG | - | chr1_2:55941721-55941740 | None:intergenic | 50.0% |
| ! | AGAACCGGGGAAGTATGACT+TGG | - | chr1_2:55941750-55941769 | None:intergenic | 50.0% |
| GGTTTCACACACGCACAAGT+GGG | + | chr1_2:55942141-55942160 | Msa0078420:intron | 50.0% | |
| CGAGCTTCCTGAGCTAAGAA+AGG | - | chr1_2:55942602-55942621 | None:intergenic | 50.0% | |
| GTCACATGCCGTGAGAAACT+AGG | + | chr1_2:55943064-55943083 | Msa0078420:intron | 50.0% | |
| GCTGTTCAGATCCACATGAC+AGG | + | chr1_2:55943307-55943326 | Msa0078420:intron | 50.0% | |
| ! | AGAACGGGTTTGGAGAGACA+CGG | - | chr1_2:55943481-55943500 | None:intergenic | 50.0% |
| ! | CAACACTGCAAGAACGGGTT+TGG | - | chr1_2:55943491-55943510 | None:intergenic | 50.0% |
| ACTAACACGTGTCCGACACT+GGG | + | chr1_2:55943604-55943623 | Msa0078420:intron | 50.0% | |
| CGTGGATGGAAAAAGCCATG+GGG | + | chr1_2:55943706-55943725 | Msa0078420:intron | 50.0% | |
| TCAAGCCTACTTAGTCCCCA+TGG | - | chr1_2:55943724-55943743 | None:intergenic | 50.0% | |
| CGAGTCCTAATGTCGGAAAG+TGG | - | chr1_2:55943894-55943913 | None:intergenic | 50.0% | |
| ! | GGGATTTTGGACCTTCAACC+TGG | - | chr1_2:55944550-55944569 | None:intergenic | 50.0% |
| ! | GGGATTTTGGACCTTCAACC+TGG | - | chr1_2:55944550-55944569 | None:intergenic | 50.0% |
| ! | AACATCTCCTCGGGGGATTT+TGG | - | chr1_2:55944727-55944746 | None:intergenic | 50.0% |
| TGTCACTAACATCTCCTCGG+GGG | - | chr1_2:55944734-55944753 | None:intergenic | 50.0% | |
| ! | GTGTCACTAACATCTCCTCG+GGG | - | chr1_2:55944735-55944754 | None:intergenic | 50.0% |
| CCTTGCTGCAACAAGAACTG+GGG | - | chr1_2:55944782-55944801 | None:intergenic | 50.0% | |
| GCCTTGCTGCAACAAGAACT+GGG | - | chr1_2:55944783-55944802 | None:intergenic | 50.0% | |
| AGCCTTGCTGCAACAAGAAC+TGG | - | chr1_2:55944784-55944803 | None:intergenic | 50.0% | |
| ! | GTGTTGGTACGGTTTCCCAA+TGG | + | chr1_2:55945456-55945475 | Msa0078420:CDS | 50.0% |
| CCTTTCTTTGCGCACACCAT+TGG | - | chr1_2:55945475-55945494 | None:intergenic | 50.0% | |
| CCAATGGTGTGCGCAAAGAA+AGG | + | chr1_2:55945472-55945491 | Msa0078420:CDS | 50.0% | |
| ATGGTGTGCGCAAAGAAAGG+AGG | + | chr1_2:55945475-55945494 | Msa0078420:CDS | 50.0% | |
| GCCTAGTCTCTAACTTCCCT+CGG | + | chr1_2:55945574-55945593 | Msa0078420:CDS | 50.0% | |
| CCTAGTCTCTAACTTCCCTC+GGG | + | chr1_2:55945575-55945594 | Msa0078420:CDS | 50.0% | |
| CTTGTCCGTAAACAACCCGA+GGG | - | chr1_2:55945593-55945612 | None:intergenic | 50.0% | |
| TCTTGTCCGTAAACAACCCG+AGG | - | chr1_2:55945594-55945613 | None:intergenic | 50.0% | |
| GCACTCTCACTAAAGGAAGC+TGG | + | chr1_2:55945621-55945640 | Msa0078420:CDS | 50.0% | |
| TTTGTGGAGCTCGGTTCATG+AGG | + | chr1_2:55945666-55945685 | Msa0078420:CDS | 50.0% | |
| AGATGTGACCTGCAGATAGG+GGG | + | chr1_2:55945723-55945742 | Msa0078420:three_prime_UTR | 50.0% | |
| AGGATCTCGTTGCAGAGGTC+GGG | - | chr1_2:55939784-55939803 | None:intergenic | 55.0% | |
| GAGGATCTCGTTGCAGAGGT+CGG | - | chr1_2:55939785-55939804 | None:intergenic | 55.0% | |
| !! | GGGTGGTGGTGGTTCTGATT+GGG | - | chr1_2:55939944-55939963 | None:intergenic | 55.0% |
| CAATCAGAACCACCACCACC+CGG | + | chr1_2:55939943-55939962 | Msa0078420:CDS | 55.0% | |
| CAGACGATGAGTTTGGACCG+AGG | - | chr1_2:55940098-55940117 | None:intergenic | 55.0% | |
| GCAGCAGCAGACGATGAGTT+TGG | - | chr1_2:55940105-55940124 | None:intergenic | 55.0% | |
| GTTAGGGCAGTGTCAGGTGT+AGG | - | chr1_2:55940832-55940851 | None:intergenic | 55.0% | |
| !! | GTTGGTGTTAGGGCAGTGTC+AGG | - | chr1_2:55940838-55940857 | None:intergenic | 55.0% |
| ! | CGCAGGGGCACAGTAAATAC+AGG | - | chr1_2:55941195-55941214 | None:intergenic | 55.0% |
| TGTGGTTAGGAGGCTGGAAG+GGG | - | chr1_2:55941352-55941371 | None:intergenic | 55.0% | |
| GGGAATTGTGGTTAGGAGGC+TGG | - | chr1_2:55941358-55941377 | None:intergenic | 55.0% | |
| GGAGAGAGCTCTTGACTAGC+AGG | + | chr1_2:55941619-55941638 | Msa0078420:intron | 55.0% | |
| ! | GAGAAAGGTGCGTGACAGAG+AGG | - | chr1_2:55941722-55941741 | None:intergenic | 55.0% |
| ATGAGGACTGAGGAGAACCG+GGG | - | chr1_2:55941763-55941782 | None:intergenic | 55.0% | |
| CATGAGGACTGAGGAGAACC+GGG | - | chr1_2:55941764-55941783 | None:intergenic | 55.0% | |
| GCATGAGGACTGAGGAGAAC+CGG | - | chr1_2:55941765-55941784 | None:intergenic | 55.0% | |
| GGGTTTCACACACGCACAAG+TGG | + | chr1_2:55942140-55942159 | Msa0078420:intron | 55.0% | |
| ATGAAGCACGGACTCCGACA+CGG | + | chr1_2:55942804-55942823 | Msa0078420:intron | 55.0% | |
| GGCAGCAACACTGCAAGAAC+GGG | - | chr1_2:55943496-55943515 | None:intergenic | 55.0% | |
| CGGCAGCAACACTGCAAGAA+CGG | - | chr1_2:55943497-55943516 | None:intergenic | 55.0% | |
| CACTAACACGTGTCCGACAC+TGG | + | chr1_2:55943603-55943622 | Msa0078420:intron | 55.0% | |
| TGAAGCACGGACACTGCTTG+TGG | - | chr1_2:55943639-55943658 | None:intergenic | 55.0% | |
| TGTCCGTGCTTCAGAGCTTG+TGG | + | chr1_2:55943646-55943665 | Msa0078420:intron | 55.0% | |
| GTCCGTGCTTCAGAGCTTGT+GGG | + | chr1_2:55943647-55943666 | Msa0078420:intron | 55.0% | |
| !! | GTCCCACAAGCTCTGAAGCA+CGG | - | chr1_2:55943652-55943671 | None:intergenic | 55.0% |
| TGAAGGTCCAAAATCCCCCG+AGG | + | chr1_2:55944717-55944736 | Msa0078420:CDS | 55.0% | |
| CCCCAGTTCTTGTTGCAGCA+AGG | + | chr1_2:55944779-55944798 | Msa0078420:CDS | 55.0% | |
| GGAACGGCAGAGAAGAGAAG+AGG | + | chr1_2:55945080-55945099 | Msa0078420:CDS | 55.0% | |
| CCCGAGGGAAGTTAGAGACT+AGG | - | chr1_2:55945578-55945597 | None:intergenic | 55.0% | |
| GGAAGCTGGATTGCATCCTC+AGG | + | chr1_2:55945635-55945654 | Msa0078420:CDS | 55.0% | |
| TCCTCAGGCCAGTCTGTTTG+TGG | + | chr1_2:55945650-55945669 | Msa0078420:CDS | 55.0% | |
| !! | TCCACAAACAGACTGGCCTG+AGG | - | chr1_2:55945654-55945673 | None:intergenic | 55.0% |
| GCCAGTCTGTTTGTGGAGCT+CGG | + | chr1_2:55945657-55945676 | Msa0078420:CDS | 55.0% | |
| ACCGAGCTCCACAAACAGAC+TGG | - | chr1_2:55945661-55945680 | None:intergenic | 55.0% | |
| GATGTGACCTGCAGATAGGG+GGG | + | chr1_2:55945724-55945743 | Msa0078420:three_prime_UTR | 55.0% | |
| GGTCCCAATTATGAGCGGCG+AGG | - | chr1_2:55939804-55939823 | None:intergenic | 60.0% | |
| ! | GGTGGCGGTTGTTGTAGTGG+TGG | - | chr1_2:55939851-55939870 | None:intergenic | 60.0% |
| ! | GTCGGTGGCGGTTGTTGTAG+TGG | - | chr1_2:55939854-55939873 | None:intergenic | 60.0% |
| TTGGAATCATCGCCGCCGTG+AGG | - | chr1_2:55939880-55939899 | None:intergenic | 60.0% | |
| !! | CGGGTGGTGGTGGTTCTGAT+TGG | - | chr1_2:55939945-55939964 | None:intergenic | 60.0% |
| TTCCAGGCTAATCCGGGTGG+TGG | - | chr1_2:55939958-55939977 | None:intergenic | 60.0% | |
| AGCTTCCAGGCTAATCCGGG+TGG | - | chr1_2:55939961-55939980 | None:intergenic | 60.0% | |
| ! | TCTGCTGCTGCTTCCTCTGC+TGG | + | chr1_2:55940114-55940133 | Msa0078420:CDS | 60.0% |
| TGGATGCGTTACAGCGGTCG+AGG | + | chr1_2:55940253-55940272 | Msa0078420:CDS | 60.0% | |
| AAGGTGCGTGACAGAGAGGG+AGG | - | chr1_2:55941718-55941737 | None:intergenic | 60.0% | |
| !! | CGGTGTTGCTGTGTCCGTGT+CGG | - | chr1_2:55942821-55942840 | None:intergenic | 60.0% |
| ACGGGTTTGGAGAGACACGG+CGG | - | chr1_2:55943478-55943497 | None:intergenic | 60.0% | |
| TGGTGAGCGTGTCCCAGTGT+CGG | - | chr1_2:55943619-55943638 | None:intergenic | 60.0% | |
| CCATTGTCCCCCCTATCTGC+AGG | - | chr1_2:55945734-55945753 | None:intergenic | 60.0% | |
| CCTGCAGATAGGGGGGACAA+TGG | + | chr1_2:55945731-55945750 | Msa0078420:three_prime_UTR | 60.0% | |
| CGGCGAGGATCTCGTTGCAG+AGG | - | chr1_2:55939789-55939808 | None:intergenic | 65.0% | |
| ACCGCCACCGACACTCCTCA+CGG | + | chr1_2:55939862-55939881 | Msa0078420:CDS | 65.0% | |
| ! | ATCGCCGCCGTGAGGAGTGT+CGG | - | chr1_2:55939872-55939891 | None:intergenic | 65.0% |
| ! | CAGGCTAATCCGGGTGGTGG+TGG | - | chr1_2:55939955-55939974 | None:intergenic | 65.0% |
| !! | CACCACCACCCGGATTAGCC+TGG | + | chr1_2:55939953-55939972 | Msa0078420:CDS | 65.0% |
| TCGCTTGGCTTCGTCGGCCT+CGG | + | chr1_2:55940078-55940097 | Msa0078420:CDS | 65.0% | |
| TTCCTCTGCTGGCACGCCGT+TGG | + | chr1_2:55940125-55940144 | Msa0078420:CDS | 65.0% | |
| AACCAACGGCGTGCCAGCAG+AGG | - | chr1_2:55940130-55940149 | None:intergenic | 65.0% | |
| GGTTTGGAGAGACACGGCGG+AGG | - | chr1_2:55943475-55943494 | None:intergenic | 65.0% | |
| GGCTCGTGAAAGAGCAGCGC+AGG | + | chr1_2:55945161-55945180 | Msa0078420:CDS | 65.0% | |
| !! | GCCGTGAGGAGTGTCGGTGG+CGG | - | chr1_2:55939866-55939885 | None:intergenic | 70.0% |
| GCCACCGACACTCCTCACGG+CGG | + | chr1_2:55939865-55939884 | Msa0078420:CDS | 70.0% | |
| !! | GCCGCCGTGAGGAGTGTCGG+TGG | - | chr1_2:55939869-55939888 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 55939465 | 55945980 | 55939465 | ID=Msa0078420;Name=Msa0078420 |
| chr1_2 | mRNA | 55939465 | 55945980 | 55939465 | ID=Msa0078420-mRNA-1;Parent=Msa0078420;Name=Msa0078420-mRNA-1;_AED=0.02;_eAED=0.02;_QI=209|1|1|1|0.75|0.6|5|294|467 |
| chr1_2 | exon | 55939465 | 55939491 | 55939465 | ID=Msa0078420-mRNA-1:exon:17447;Parent=Msa0078420-mRNA-1 |
| chr1_2 | exon | 55939542 | 55940521 | 55939542 | ID=Msa0078420-mRNA-1:exon:17448;Parent=Msa0078420-mRNA-1 |
| chr1_2 | exon | 55944715 | 55944885 | 55944715 | ID=Msa0078420-mRNA-1:exon:17449;Parent=Msa0078420-mRNA-1 |
| chr1_2 | exon | 55945075 | 55945278 | 55945075 | ID=Msa0078420-mRNA-1:exon:17450;Parent=Msa0078420-mRNA-1 |
| chr1_2 | exon | 55945456 | 55945980 | 55945456 | ID=Msa0078420-mRNA-1:exon:17451;Parent=Msa0078420-mRNA-1 |
| chr1_2 | five_prime_UTR | 55939465 | 55939491 | 55939465 | ID=Msa0078420-mRNA-1:five_prime_utr;Parent=Msa0078420-mRNA-1 |
| chr1_2 | five_prime_UTR | 55939542 | 55939723 | 55939542 | ID=Msa0078420-mRNA-1:five_prime_utr;Parent=Msa0078420-mRNA-1 |
| chr1_2 | CDS | 55939724 | 55940521 | 55939724 | ID=Msa0078420-mRNA-1:cds;Parent=Msa0078420-mRNA-1 |
| chr1_2 | CDS | 55944715 | 55944885 | 55944715 | ID=Msa0078420-mRNA-1:cds;Parent=Msa0078420-mRNA-1 |
| chr1_2 | CDS | 55945075 | 55945278 | 55945075 | ID=Msa0078420-mRNA-1:cds;Parent=Msa0078420-mRNA-1 |
| chr1_2 | CDS | 55945456 | 55945686 | 55945456 | ID=Msa0078420-mRNA-1:cds;Parent=Msa0078420-mRNA-1 |
| chr1_2 | three_prime_UTR | 55945687 | 55945980 | 55945687 | ID=Msa0078420-mRNA-1:three_prime_utr;Parent=Msa0078420-mRNA-1 |
| Gene Sequence |
| Protein sequence |
