AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0919470


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0919470 MtrunA17_Chr6g0475211 88.347 472 54 1 1 471 1 472 0.0 800
Msa0919470 MtrunA17_Chr6g0475211 91.398 93 6 1 535 625 442 534 3.59e-46 171
Msa0919470 MtrunA17_Chr3g0078341 84.958 472 66 3 1 471 1 468 0.0 788
Msa0919470 MtrunA17_Chr3g0078341 91.398 93 6 1 535 625 438 530 7.00e-46 170
Msa0919470 MtrunA17_Chr6g0482641 58.868 265 80 5 140 403 46 282 3.33e-100 307
Msa0919470 MtrunA17_Chr6g0476071 45.581 215 69 7 241 451 3 173 3.25e-45 158
Msa0919470 MtrunA17_Chr6g0476081 69.767 86 25 1 534 619 2 86 2.20e-32 120
Msa0919470 MtrunA17_Chr6g0450581 32.895 228 111 5 217 440 29 218 4.36e-27 112
Msa0919470 MtrunA17_Chr6g0450581 50.602 83 38 1 543 622 225 307 1.04e-17 84.3
Msa0919470 MtrunA17_Chr1g0149081 46.154 117 60 1 335 451 22 135 8.41e-25 100
Msa0919470 MtrunA17_Chr7g0223571 59.091 88 29 2 544 625 1 87 5.11e-24 97.1
Msa0919470 MtrunA17_Chr1g0149091 60.000 75 27 1 545 616 23 97 8.56e-24 96.3
Msa0919470 MtrunA17_Chr1g0149901 61.333 75 26 1 545 616 130 204 1.15e-22 96.7
Msa0919470 MtrunA17_Chr1g0149901 45.192 104 55 1 332 435 20 121 1.17e-19 87.8
Msa0919470 MtrunA17_Chr1g0149891 61.333 75 26 1 545 616 257 331 6.98e-22 97.4
Msa0919470 MtrunA17_Chr1g0149891 41.935 124 63 2 316 432 124 245 4.47e-19 89.0
Msa0919470 MtrunA17_Chr6g0450541 51.807 83 37 1 543 622 7 89 2.62e-21 88.6
Msa0919470 MtrunA17_Chr6g0482631 48.718 117 15 3 544 617 1 115 1.88e-20 87.0
Msa0919470 MtrunA17_Chr1g0159581 49.398 83 39 1 543 622 123 205 7.93e-18 82.4
Msa0919470 MtrunA17_Chr1g0159581 47.619 84 41 2 345 425 30 113 5.80e-15 74.3
Msa0919470 MtrunA17_Chr6g0450531 36.036 111 55 3 321 428 19 116 1.32e-16 76.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0919470 AT5G51740.1 51.752 371 154 5 105 471 31 380 6.54e-128 384
Msa0919470 AT5G51740.1 71.277 94 23 3 535 625 350 442 6.75e-32 129
Msa0919470 AT5G51740.2 51.752 371 154 5 105 471 74 423 1.89e-127 384
Msa0919470 AT5G51740.2 71.277 94 23 3 535 625 393 485 1.09e-31 129
Msa0919470 AT5G51740.3 53.429 350 139 4 105 451 74 402 6.61e-127 380

Find 144 sgRNAs with CRISPR-Local

Find 298 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCTAAGAGGTTAGGGAAAA+TGG 0.112500 6_2:+51529145 Msa0919470:CDS
GCAATCTGGGTATTTGAATT+TGG 0.114800 6_2:+51528884 Msa0919470:CDS
GCAACCTGGGTATTTGAATT+TGG 0.129028 6_2:+51528977 Msa0919470:CDS
TCTAAAGGTGGTAACTTTAA+TGG 0.151078 6_2:+51529002 Msa0919470:CDS
ATGAGGTTCTTGATGATAAA+TGG 0.155660 6_2:+51529759 Msa0919470:CDS
TCCAAAGGTGTTAGCTTTAA+TGG 0.157644 6_2:+51529200 Msa0919470:CDS
TGGATTGAATTGGGAGATTT+TGG 0.167567 6_2:+51529844 Msa0919470:CDS
TCTAAAGATGCTAGCTTTAA+TGG 0.175399 6_2:+51528909 Msa0919470:CDS
TGTCAAGTTGGTAACTTTAA+TGG 0.188305 6_2:+51529101 Msa0919470:CDS
CAATCTGGGTATTTGAATTT+GGG 0.238019 6_2:+51528885 Msa0919470:CDS
CTGCTCGAGTTATCTCGTTT+TGG 0.240924 6_2:-51530919 None:intergenic
TAAGGATTTGATATGTTAAT+AGG 0.244723 6_2:+51532887 Msa0919470:three_prime_UTR
CAACCTGGGTATTTGAATTT+GGG 0.256623 6_2:+51528978 Msa0919470:CDS
TTGAGATAAATAAGAATATT+GGG 0.260342 6_2:+51529171 Msa0919470:CDS
TTTGAGATAAATAAGAATAT+TGG 0.272846 6_2:+51529170 Msa0919470:CDS
AAATGCGTTCGCTTCGTATA+AGG 0.273091 6_2:-51529443 None:intergenic
ATCCTAACTCTCACACTTTC+AGG 0.275058 6_2:-51529563 None:intergenic
ATGAATAGTGTGGGAGAAAA+TGG 0.276100 6_2:-51528654 None:intergenic
GCAGAGATAGCAACTATTAT+TGG 0.282923 6_2:+51529956 Msa0919470:CDS
GGTTCAGAAGAGTAGGAAAA+AGG 0.286020 6_2:+51529781 Msa0919470:CDS
CTAAAGGTGGTAACTTTAAT+GGG 0.298124 6_2:+51529003 Msa0919470:CDS
CGCATTTGGATGGATTGAAT+TGG 0.304915 6_2:+51529834 Msa0919470:CDS
TGTGTATGTAAATGTGAATT+TGG 0.317129 6_2:+51532854 Msa0919470:three_prime_UTR
CCATCCAAATGCGACGTATA+AGG 0.317832 6_2:-51529824 None:intergenic
TGGTGTTGAAGGATTTCTTT+AGG 0.322830 6_2:+51532748 Msa0919470:CDS
TCTTCAATTCCTAAGAGGTT+AGG 0.330856 6_2:+51529137 Msa0919470:CDS
TGGGAAGATAGTCGTGTTTA+CGG 0.331309 6_2:+51529907 Msa0919470:CDS
CCAAAGGTGTTAGCTTTAAT+GGG 0.339118 6_2:+51529201 Msa0919470:CDS
TTTCTTGGTTCTTTCAATCA+TGG 0.343833 6_2:+51528761 Msa0919470:exon
GACATAGTGTTGACAATATC+AGG 0.345694 6_2:-51530425 None:intergenic
AAGAGATGGAGAAGAGTCTT+GGG 0.345827 6_2:+51529480 Msa0919470:CDS
GTCAAGTTGGTAACTTTAAT+GGG 0.345957 6_2:+51529102 Msa0919470:CDS
CTAAAGATGCTAGCTTTAAT+GGG 0.347058 6_2:+51528910 Msa0919470:CDS
ACACTTTCAGGATGCATTGC+AGG 0.348683 6_2:-51529551 None:intergenic
GCAACCTTATACGTCGCATT+TGG 0.350333 6_2:+51529820 Msa0919470:CDS
AGACTCTTCTCCATCTCTTT+CGG 0.364887 6_2:-51529476 None:intergenic
TCTTCGATTTCTAATAGATT+AGG 0.367132 6_2:+51529038 Msa0919470:CDS
AAGAAAACGAGCAGAATTAC+TGG 0.372401 6_2:+51532667 Msa0919470:CDS
CCCATTAAAGCTAACACCTT+TGG 0.373919 6_2:-51529201 None:intergenic
CTTCAATTCCTAAGAGGTTA+GGG 0.379836 6_2:+51529138 Msa0919470:CDS
ATTGGTATAGTGGTTGGTTC+AGG 0.382197 6_2:+51529380 Msa0919470:CDS
GATTGCAAAATTCTGTTACT+AGG 0.384217 6_2:-51528867 None:intergenic
CCTAAGAGGTTAGGGAAAAT+GGG 0.389385 6_2:+51529146 Msa0919470:CDS
CATCTTCTCAGCACTGTGTC+TGG 0.400313 6_2:-51530348 None:intergenic
ATTAGAGTTGGTTGTCAAGT+TGG 0.403962 6_2:+51529089 Msa0919470:CDS
GCTTCAGAAAATTCTGTGTT+TGG 0.406389 6_2:+51529659 Msa0919470:CDS
AGAGGAAAGCTTGTTCTTGA+TGG 0.407337 6_2:+51528795 Msa0919470:CDS
CATCAAGAACCTCATCTTCC+CGG 0.410729 6_2:-51529751 None:intergenic
AAAATTGGTTTCAGAATCCT+AGG 0.413695 6_2:+51529348 Msa0919470:CDS
GAATTTGGTTTCATTTACTA+AGG 0.415874 6_2:+51532869 Msa0919470:three_prime_UTR
AAGGGAAAGTTGGAGGGAAT+TGG 0.419080 6_2:+51529726 Msa0919470:CDS
TATTTGAATTTGGGTTCTAA+AGG 0.419872 6_2:+51528987 Msa0919470:CDS
GCATTTGGATGGATTGAATT+GGG 0.421702 6_2:+51529835 Msa0919470:CDS
GGGAAGATAGTCGTGTTTAC+GGG 0.423649 6_2:+51529908 Msa0919470:CDS
AGAGAAGGACATGGTGTTGA+AGG 0.427494 6_2:+51532737 Msa0919470:CDS
TTTACATACACAGACAAGTA+TGG 0.429888 6_2:-51532843 None:intergenic
ACTGAAAATGAAGGGAAAGT+TGG 0.438682 6_2:+51529716 Msa0919470:CDS
AGGGGAAAGGGGAAGAAGAA+TGG 0.443081 6_2:-51528549 None:intergenic
GTTGAAGAGAGGGTTGAGTA+AGG 0.449933 6_2:+51529610 Msa0919470:CDS
TGGTTCTTTCAATCATGGCT+TGG 0.451356 6_2:+51528766 Msa0919470:exon
TATTTCGCCACTCATCCATC+TGG 0.453067 6_2:+51532644 Msa0919470:CDS
GCATGTTATGATTGGTATAG+TGG 0.453566 6_2:+51529370 Msa0919470:CDS
AATGCAACACTCAGCATGCC+AGG 0.458010 6_2:-51531192 None:intergenic
ACCTAAAGTCTACGAAAAGT+TGG 0.458356 6_2:+51532589 Msa0919470:CDS
TGAGGTTCTTGATGATAAAT+GGG 0.460396 6_2:+51529760 Msa0919470:CDS
TTTGGTGGTGAAGGATCCTA+TGG 0.460965 6_2:+51529862 Msa0919470:CDS
AGCATGCCAGGGAGGAATGC+CGG 0.463092 6_2:-51531180 None:intergenic
TCATCTCCGGCATTCCTCCC+TGG 0.465548 6_2:+51531174 Msa0919470:CDS
AATCCTAGGCATGTTATGAT+TGG 0.472024 6_2:+51529362 Msa0919470:CDS
ATCTAAAAGCTTAGAATCGC+CGG 0.472748 6_2:-51532621 None:intergenic
AAAGAGATGGAGAAGAGTCT+TGG 0.473631 6_2:+51529479 Msa0919470:CDS
AGAATTACTGGCTCAAGCTC+AGG 0.477979 6_2:+51532679 Msa0919470:CDS
GGTTGCAAAATTCTCGAACT+AGG 0.479881 6_2:-51528960 None:intergenic
CTGGATGCCTTGTATGGACT+TGG 0.480128 6_2:+51530961 Msa0919470:CDS
AATAATTACCTTCTGGAGAA+AGG 0.480591 6_2:-51530467 None:intergenic
AGAAGATGACAAAGAATATG+TGG 0.484136 6_2:+51530363 Msa0919470:CDS
AAGTTGGAGGGAATTGGCAC+CGG 0.485472 6_2:+51529732 Msa0919470:CDS
TTGAATTTGGGTTCTAAAGG+TGG 0.488118 6_2:+51528990 Msa0919470:CDS
CCTTATACGTCGCATTTGGA+TGG 0.493369 6_2:+51529824 Msa0919470:CDS
AATAATAAGAATATTAGAGT+TGG 0.496382 6_2:+51529077 Msa0919470:CDS
TTTACTTGTGAAAGGGGAAA+GGG 0.498033 6_2:-51528561 None:intergenic
GTTATTGATTGAAGCATGAA+AGG 0.505204 6_2:-51528680 None:intergenic
GTTATGATTGGTATAGTGGT+TGG 0.507924 6_2:+51529374 Msa0919470:CDS
CAAGTCCATACAAGGCATCC+AGG 0.512539 6_2:-51530960 None:intergenic
ATCCTGAAAGTGTGAGAGTT+AGG 0.512578 6_2:+51529561 Msa0919470:CDS
ACAGACCTGGATGCCTTGTA+TGG 0.512841 6_2:+51530955 Msa0919470:CDS
AATGCATTGACTGAAAATGA+AGG 0.512873 6_2:+51529707 Msa0919470:CDS
CCTAAAGTCTACGAAAAGTT+GGG 0.514744 6_2:+51532590 Msa0919470:CDS
TTATCGAAGCGTTGAAGAGA+GGG 0.518421 6_2:+51529600 Msa0919470:CDS
ATGGTGGCATTTCCCACAGT+TGG 0.526476 6_2:-51532824 None:intergenic
ATAAATGGGTTCAGAAGAGT+AGG 0.531439 6_2:+51529774 Msa0919470:CDS
AGTTGGAGGGAATTGGCACC+GGG 0.532756 6_2:+51529733 Msa0919470:CDS
TGAAAGGAAGATGAATAGTG+TGG 0.534353 6_2:-51528664 None:intergenic
TGAGATAAATAAGAATATTG+GGG 0.535578 6_2:+51529172 Msa0919470:CDS
CTGTTGCTGTGTATCATCTC+CGG 0.535740 6_2:+51531161 Msa0919470:CDS
TGCCACACGTGGATCGTAGC+CGG 0.536111 6_2:-51532567 None:intergenic
CTTCCCACCAGGTAAGCAAA+AGG 0.542507 6_2:-51529891 None:intergenic
GATAAATAAGAATATTGGGG+TGG 0.543034 6_2:+51529175 Msa0919470:CDS
AATATTGGGGTGGGTTCCAA+AGG 0.550451 6_2:+51529185 Msa0919470:CDS
CTTCTATTAGTTGCATCCGC+CGG 0.553436 6_2:+51532548 Msa0919470:CDS
AGTCATACCAAGTCCATACA+AGG 0.557092 6_2:-51530968 None:intergenic
TACGGCTACCTTTCTCCAGA+AGG 0.558879 6_2:+51530459 Msa0919470:CDS
GAAAATGAAGGGAAAGTTGG+AGG 0.559808 6_2:+51529719 Msa0919470:CDS
GAGCGAGTTTGAGAAGATGA+AGG 0.561104 6_2:+51529505 Msa0919470:CDS
AAGCAAAAGGCATTAACCAT+AGG 0.561244 6_2:-51529878 None:intergenic
ATAAATAAGAATATTGGGGT+GGG 0.563572 6_2:+51529176 Msa0919470:CDS
TTTAGGAGATTAGACAAAAG+GGG 0.565002 6_2:+51529245 Msa0919470:CDS
ATACCAATCATAACATGCCT+AGG 0.568681 6_2:-51529365 None:intergenic
GAAATTGAAGCTGATTACAT+TGG 0.569179 6_2:+51532524 Msa0919470:CDS
GGTTGAGTAAGGAGAATGTG+TGG 0.571308 6_2:+51529621 Msa0919470:CDS
GAACCCAAATTCAAATACCC+AGG 0.572752 6_2:-51528981 None:intergenic
CTGTGTTTGGTGAAGAAAGT+GGG 0.573793 6_2:+51529672 Msa0919470:CDS
AGGTGTGTGATTTATAAAGA+AGG 0.577421 6_2:-51528606 None:intergenic
ACTGGCTCAAGCTCAGGTGA+TGG 0.577941 6_2:+51532685 Msa0919470:CDS
TCTGTGTTTGGTGAAGAAAG+TGG 0.579845 6_2:+51529671 Msa0919470:CDS
GAGTTTGAGAAGATGAAGGC+GGG 0.581578 6_2:+51529509 Msa0919470:CDS
ATTTGAATGTAGTATGAGCA+TGG 0.589277 6_2:+51530835 Msa0919470:intron
ATGCATTGACTGAAAATGAA+GGG 0.590623 6_2:+51529708 Msa0919470:CDS
CATAGTCAGAGGTGTAAACT+CGG 0.597056 6_2:-51530891 None:intergenic
GAAAGGAAGATGAATAGTGT+GGG 0.597604 6_2:-51528663 None:intergenic
AGCAACTATTATTGGACATG+AGG 0.602186 6_2:+51529964 Msa0919470:CDS
ATTATCGAAGCGTTGAAGAG+AGG 0.605086 6_2:+51529599 Msa0919470:CDS
ATCATGGCTTGGTATAGAAG+AGG 0.608651 6_2:+51528777 Msa0919470:exon
CGAGTTTGAGAAGATGAAGG+CGG 0.609178 6_2:+51529508 Msa0919470:CDS
GAAGATGACAAAGAATATGT+GGG 0.612484 6_2:+51530364 Msa0919470:CDS
GAATTGGCACCGGGAAGATG+AGG 0.612493 6_2:+51529742 Msa0919470:CDS
CAGACAAGTGTTCCAACTGT+GGG 0.618562 6_2:+51532812 Msa0919470:three_prime_UTR
AAAATGAAGGGAAAGTTGGA+GGG 0.619844 6_2:+51529720 Msa0919470:CDS
ACAGCAACAGCATTGTGCAC+AGG 0.621274 6_2:-51531148 None:intergenic
TGATTAGGTTGGACATGCTG+TGG 0.626030 6_2:+51530325 Msa0919470:intron
TTACTTGTGAAAGGGGAAAG+GGG 0.626771 6_2:-51528560 None:intergenic
AACACGACTATCTTCCCACC+AGG 0.637312 6_2:-51529902 None:intergenic
ATGCAACACTCAGCATGCCA+GGG 0.639308 6_2:-51531191 None:intergenic
ACAGACAAGTGTTCCAACTG+TGG 0.639736 6_2:+51532811 Msa0919470:three_prime_UTR
CGCCGGCTACGATCCACGTG+TGG 0.642188 6_2:+51532565 Msa0919470:CDS
ATATATAAGACTGTAAGAGA+AGG 0.650562 6_2:+51532722 Msa0919470:CDS
AGAGATGGAGAAGAGTCTTG+GGG 0.653875 6_2:+51529481 Msa0919470:CDS
ATAGTGTGGGAGAAAATGGA+AGG 0.656134 6_2:-51528650 None:intergenic
TAGACTTTAGGTGCCACACG+TGG 0.667217 6_2:-51532578 None:intergenic
ACATACACAGACAAGTATGG+TGG 0.691543 6_2:-51532840 None:intergenic
CAACACTCAGCATGCCAGGG+AGG 0.697251 6_2:-51531188 None:intergenic
CACACGTGGATCGTAGCCGG+CGG 0.706408 6_2:-51532564 None:intergenic
GTTTGGTGAAGAAAGTGGGA+AGG 0.710512 6_2:+51529676 Msa0919470:CDS
AAGACTGTAAGAGAAGGACA+TGG 0.732952 6_2:+51532728 Msa0919470:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTTTGATTTATCATATAT+TGG + chr6_2:51531673-51531692 Msa0919470:intron 10.0%
!! ATAAAAATTATAAGTGTTTA+TGG - chr6_2:51531758-51531777 None:intergenic 10.0%
!!! AAAATGTACAAATTTAAAAT+TGG - chr6_2:51532120-51532139 None:intergenic 10.0%
!! CTGAAAAATTATAAAAAATT+GGG - chr6_2:51532500-51532519 None:intergenic 10.0%
!! AATAATAAGAATATTAGAGT+TGG + chr6_2:51529077-51529096 Msa0919470:CDS 15.0%
!!! TTTGAGATAAATAAGAATAT+TGG + chr6_2:51529170-51529189 Msa0919470:CDS 15.0%
!! TTGAGATAAATAAGAATATT+GGG + chr6_2:51529171-51529190 Msa0919470:CDS 15.0%
!!! TTGAAGTTAATAAGAATTTT+AGG + chr6_2:51529270-51529289 Msa0919470:CDS 15.0%
!!! TTTTTATAACTGTGTATTTT+GGG + chr6_2:51529405-51529424 Msa0919470:CDS 15.0%
!!! TTTGATTTGTTTAACTTATT+AGG + chr6_2:51529993-51530012 Msa0919470:intron 15.0%
!! TTTATTAAGCAATATGAAAT+TGG + chr6_2:51531541-51531560 Msa0919470:intron 15.0%
!!! ATTGGAAATTTTATTTTAGT+TGG + chr6_2:51531559-51531578 Msa0919470:intron 15.0%
!! ATATTGAAAAGAAGATTAAA+CGG - chr6_2:51532250-51532269 None:intergenic 15.0%
!!! ATTTTAATTATACACAAATG+TGG + chr6_2:51532426-51532445 Msa0919470:intron 15.0%
!! TGATGGTAATATATTTATTA+TGG + chr6_2:51532453-51532472 Msa0919470:intron 15.0%
!! CCTGAAAAATTATAAAAAAT+TGG - chr6_2:51532501-51532520 None:intergenic 15.0%
!!! CCAATTTTTTATAATTTTTC+AGG + chr6_2:51532498-51532517 Msa0919470:intron 15.0%
!!! TTTTTTATAATTTTTCAGGA+TGG + chr6_2:51532502-51532521 Msa0919470:intron 15.0%
!! ATGAAAAAGTTGAAAATTTG+TGG - chr6_2:51528733-51528752 None:intergenic 20.0%
!!! TTTTCATCAATTTAGTTTCT+TGG + chr6_2:51528746-51528765 Msa0919470:five_prime_UTR 20.0%
!! TTCTAATAGATTAGGAAAAA+TGG + chr6_2:51529046-51529065 Msa0919470:CDS 20.0%
!! TCTAATAGATTAGGAAAAAT+GGG + chr6_2:51529047-51529066 Msa0919470:CDS 20.0%
!! TGAGATAAATAAGAATATTG+GGG + chr6_2:51529172-51529191 Msa0919470:CDS 20.0%
!!! GTTTTTATAACTGTGTATTT+TGG + chr6_2:51529404-51529423 Msa0919470:CDS 20.0%
!! TCAAATAAGTTAATCCAAAT+AGG - chr6_2:51530019-51530038 None:intergenic 20.0%
!! TTAAGCTATTTATTCAAACA+AGG + chr6_2:51530241-51530260 Msa0919470:intron 20.0%
!! AAAAGCAACAAAAATTCAAT+TGG - chr6_2:51530514-51530533 None:intergenic 20.0%
!! CACGTTAAATATTAAGATAA+GGG + chr6_2:51530600-51530619 Msa0919470:intron 20.0%
!!! GGACTTTTATTAATTTTTGT+TGG - chr6_2:51531023-51531042 None:intergenic 20.0%
!! CAAATAAAGAAAGAAAACAT+TGG - chr6_2:51531437-51531456 None:intergenic 20.0%
!! TGGTATTCTTGTATAAATTA+AGG - chr6_2:51531616-51531635 None:intergenic 20.0%
!! AAATTCCAATTCGTATTTAA+AGG - chr6_2:51531658-51531677 None:intergenic 20.0%
!! GAATGAAATTAATGCAAATA+TGG - chr6_2:51531870-51531889 None:intergenic 20.0%
!! CCTATACAAATGAATTAATT+TGG - chr6_2:51532025-51532044 None:intergenic 20.0%
!! CCAAATTAATTCATTTGTAT+AGG + chr6_2:51532022-51532041 Msa0919470:intron 20.0%
!! TAAGGATTTGATATGTTAAT+AGG + chr6_2:51532887-51532906 Msa0919470:three_prime_UTR 20.0%
!!! ATTTTCTAGTCTAATTTGGT+TGG - chr6_2:51528523-51528542 None:intergenic 25.0%
!!! TGACATTTTCTAGTCTAATT+TGG - chr6_2:51528527-51528546 None:intergenic 25.0%
!! AAATGCTTTTACTTGTGAAA+GGG - chr6_2:51528571-51528590 None:intergenic 25.0%
!! AAAATGCTTTTACTTGTGAA+AGG - chr6_2:51528572-51528591 None:intergenic 25.0%
!!! GGATATAGAAAAAGTATTCA+CGG - chr6_2:51528632-51528651 None:intergenic 25.0%
! TTTGATGAGTTCAAAAATGT+GGG - chr6_2:51528709-51528728 None:intergenic 25.0%
!! TTTTGATGAGTTCAAAAATG+TGG - chr6_2:51528710-51528729 None:intergenic 25.0%
!! TATTTGAATTTGGGTTCTAA+AGG + chr6_2:51528894-51528913 Msa0919470:CDS 25.0%
! TCTTCGATTTCTAATAGATT+AGG + chr6_2:51529038-51529057 Msa0919470:CDS 25.0%
! ATAAATAAGAATATTGGGGT+GGG + chr6_2:51529176-51529195 Msa0919470:CDS 25.0%
!!! ATTTTAGGAGATTAGACAAA+AGG + chr6_2:51529243-51529262 Msa0919470:CDS 25.0%
!!! TTTTAGGAGATTAGACAAAA+GGG + chr6_2:51529244-51529263 Msa0919470:CDS 25.0%
!! TTTAACTTATTAGGCCTATT+TGG + chr6_2:51530002-51530021 Msa0919470:intron 25.0%
! ATTGGTTATAAAGAGAGAAA+AGG - chr6_2:51530496-51530515 None:intergenic 25.0%
! GACTCATTTCATTGATATAT+AGG + chr6_2:51530545-51530564 Msa0919470:intron 25.0%
! GCACGTTAAATATTAAGATA+AGG + chr6_2:51530599-51530618 Msa0919470:intron 25.0%
! TAAGGGAAAAACATGAAATT+AGG + chr6_2:51530617-51530636 Msa0919470:intron 25.0%
! GAAAAATTATGTGTTTGAGT+TGG - chr6_2:51530811-51530830 None:intergenic 25.0%
!! TTTAAGAAACGGTTACATTT+TGG - chr6_2:51531044-51531063 None:intergenic 25.0%
! TAACCGTTTCTTAAAATCAA+GGG + chr6_2:51531049-51531068 Msa0919470:intron 25.0%
!!! TTCTCCATTTTGTTTTTGTT+TGG + chr6_2:51531254-51531273 Msa0919470:intron 25.0%
! CAAACCAAACAAAAACAAAA+TGG - chr6_2:51531261-51531280 None:intergenic 25.0%
!!! CATTTTGTTTTTGTTTGGTT+TGG + chr6_2:51531259-51531278 Msa0919470:intron 25.0%
! AACAGTGCAAATTATAAAAG+AGG - chr6_2:51531342-51531361 None:intergenic 25.0%
!! TCTTTCTTTATTTGTTGCTA+TGG + chr6_2:51531443-51531462 Msa0919470:intron 25.0%
!!! GTTTGTCATGGTATTTTTTA+TGG - chr6_2:51531636-51531655 None:intergenic 25.0%
! ACAAACCTTTAAATACGAAT+TGG + chr6_2:51531650-51531669 Msa0919470:intron 25.0%
! ATTATAAGTGTTTATGGAGA+GGG - chr6_2:51531752-51531771 None:intergenic 25.0%
! AATTATAAGTGTTTATGGAG+AGG - chr6_2:51531753-51531772 None:intergenic 25.0%
! TGCAAATATGGATGTAATTT+CGG - chr6_2:51531858-51531877 None:intergenic 25.0%
!! CATTTACATTTGTTTCTTGT+TGG + chr6_2:51532201-51532220 Msa0919470:intron 25.0%
! ATATATAAGACTGTAAGAGA+AGG + chr6_2:51532722-51532741 Msa0919470:CDS 25.0%
! TGTGTATGTAAATGTGAATT+TGG + chr6_2:51532854-51532873 Msa0919470:three_prime_UTR 25.0%
!! GAATTTGGTTTCATTTACTA+AGG + chr6_2:51532869-51532888 Msa0919470:three_prime_UTR 25.0%
!!! AGGTTTTAAATCATCAAAGA+AGG + chr6_2:51532907-51532926 Msa0919470:three_prime_UTR 25.0%
! AATGCTTTTACTTGTGAAAG+GGG - chr6_2:51528570-51528589 None:intergenic 30.0%
AGGTGTGTGATTTATAAAGA+AGG - chr6_2:51528609-51528628 None:intergenic 30.0%
!! TATAGAAAAAGTATTCACGG+AGG - chr6_2:51528629-51528648 None:intergenic 30.0%
! GTTATTGATTGAAGCATGAA+AGG - chr6_2:51528683-51528702 None:intergenic 30.0%
! TTTCTTGGTTCTTTCAATCA+TGG + chr6_2:51528761-51528780 Msa0919470:exon 30.0%
!! TCTTGATGGTTTTCATAACT+TGG + chr6_2:51528809-51528828 Msa0919470:CDS 30.0%
! TTTTCATAACTTGGCTTCTA+GGG + chr6_2:51528818-51528837 Msa0919470:CDS 30.0%
AGGCTGAAAAATTGGATTAT+GGG - chr6_2:51528850-51528869 None:intergenic 30.0%
TAGGCTGAAAAATTGGATTA+TGG - chr6_2:51528851-51528870 None:intergenic 30.0%
GATTGCAAAATTCTGTTACT+AGG - chr6_2:51528870-51528889 None:intergenic 30.0%
! AGTAACAGAATTTTGCAATC+TGG + chr6_2:51528870-51528889 Msa0919470:CDS 30.0%
! GTAACAGAATTTTGCAATCT+GGG + chr6_2:51528871-51528890 Msa0919470:CDS 30.0%
CAATCTGGGTATTTGAATTT+GGG + chr6_2:51528885-51528904 Msa0919470:CDS 30.0%
!! TCTAAAGATGCTAGCTTTAA+TGG + chr6_2:51528909-51528928 Msa0919470:CDS 30.0%
!! CTAAAGATGCTAGCTTTAAT+GGG + chr6_2:51528910-51528929 Msa0919470:CDS 30.0%
TCTAAAGGTGGTAACTTTAA+TGG + chr6_2:51529002-51529021 Msa0919470:CDS 30.0%
CTAAAGGTGGTAACTTTAAT+GGG + chr6_2:51529003-51529022 Msa0919470:CDS 30.0%
!! TGTCAAGTTGGTAACTTTAA+TGG + chr6_2:51529101-51529120 Msa0919470:CDS 30.0%
!! GTCAAGTTGGTAACTTTAAT+GGG + chr6_2:51529102-51529121 Msa0919470:CDS 30.0%
GATAAATAAGAATATTGGGG+TGG + chr6_2:51529175-51529194 Msa0919470:CDS 30.0%
TTTAGGAGATTAGACAAAAG+GGG + chr6_2:51529245-51529264 Msa0919470:CDS 30.0%
! TTAAAATGCTGCACATTTTG+TGG - chr6_2:51529314-51529333 None:intergenic 30.0%
!!! GGATTCTGAAACCAATTTTT+GGG - chr6_2:51529347-51529366 None:intergenic 30.0%
!!! AGGATTCTGAAACCAATTTT+TGG - chr6_2:51529348-51529367 None:intergenic 30.0%
! AAAATTGGTTTCAGAATCCT+AGG + chr6_2:51529348-51529367 Msa0919470:CDS 30.0%
!! AACTGTGTATTTTGGGAATA+TGG + chr6_2:51529412-51529431 Msa0919470:CDS 30.0%
!! AATGCATTGACTGAAAATGA+AGG + chr6_2:51529707-51529726 Msa0919470:CDS 30.0%
!! ATGCATTGACTGAAAATGAA+GGG + chr6_2:51529708-51529727 Msa0919470:CDS 30.0%
! ATGAGGTTCTTGATGATAAA+TGG + chr6_2:51529759-51529778 Msa0919470:CDS 30.0%
! TGAGGTTCTTGATGATAAAT+GGG + chr6_2:51529760-51529779 Msa0919470:CDS 30.0%
CAACTGTTTGAGAGATATTA+CGG + chr6_2:51530065-51530084 Msa0919470:intron 30.0%
CTTAAGCGCTTATTTGATAA+AGG + chr6_2:51530198-51530217 Msa0919470:intron 30.0%
AGAAGATGACAAAGAATATG+TGG + chr6_2:51530363-51530382 Msa0919470:CDS 30.0%
GAAGATGACAAAGAATATGT+GGG + chr6_2:51530364-51530383 Msa0919470:CDS 30.0%
! AATAATTACCTTCTGGAGAA+AGG - chr6_2:51530470-51530489 None:intergenic 30.0%
! ATAGGTAATGTTTGTTAGAC+AGG + chr6_2:51530563-51530582 Msa0919470:intron 30.0%
ATGAAGTTTAGCTGAATTAG+TGG + chr6_2:51530650-51530669 Msa0919470:intron 30.0%
ATTTGAATGTAGTATGAGCA+TGG + chr6_2:51530835-51530854 Msa0919470:intron 30.0%
GTAACCGTTTCTTAAAATCA+AGG + chr6_2:51531048-51531067 Msa0919470:intron 30.0%
!! CAACCCTTGATTTTAAGAAA+CGG - chr6_2:51531055-51531074 None:intergenic 30.0%
TCGTATTTAAAGGTTTGTCA+TGG - chr6_2:51531648-51531667 None:intergenic 30.0%
! AAAACATGGTTATGCCATTT+GGG - chr6_2:51531722-51531741 None:intergenic 30.0%
GTAAAGTAGTGCAACTTAAT+TGG - chr6_2:51531785-51531804 None:intergenic 30.0%
AATTTGGTCTATCTCATACA+CGG - chr6_2:51532009-51532028 None:intergenic 30.0%
! AACCATAATGAGTCTGATTT+TGG + chr6_2:51532142-51532161 Msa0919470:intron 30.0%
!!! GCTTCATTTTAACTTCTTTC+TGG + chr6_2:51532279-51532298 Msa0919470:intron 30.0%
GAAATTGAAGCTGATTACAT+TGG + chr6_2:51532524-51532543 Msa0919470:CDS 30.0%
!! GGACTTTCATAATTGTTTTG+TGG + chr6_2:51532769-51532788 Msa0919470:exon 30.0%
TTTACATACACAGACAAGTA+TGG - chr6_2:51532846-51532865 None:intergenic 30.0%
TTTACTTGTGAAAGGGGAAA+GGG - chr6_2:51528564-51528583 None:intergenic 35.0%
! TTTTACTTGTGAAAGGGGAA+AGG - chr6_2:51528565-51528584 None:intergenic 35.0%
ATGAATAGTGTGGGAGAAAA+TGG - chr6_2:51528657-51528676 None:intergenic 35.0%
GAAAGGAAGATGAATAGTGT+GGG - chr6_2:51528666-51528685 None:intergenic 35.0%
TGAAAGGAAGATGAATAGTG+TGG - chr6_2:51528667-51528686 None:intergenic 35.0%
! GTTTTCATAACTTGGCTTCT+AGG + chr6_2:51528817-51528836 Msa0919470:CDS 35.0%
CTGTTACTAGGCTGAAAAAT+TGG - chr6_2:51528858-51528877 None:intergenic 35.0%
GCAATCTGGGTATTTGAATT+TGG + chr6_2:51528884-51528903 Msa0919470:CDS 35.0%
CAACCTGGGTATTTGAATTT+GGG + chr6_2:51528978-51528997 Msa0919470:CDS 35.0%
!! TTGAATTTGGGTTCTAAAGG+TGG + chr6_2:51528990-51529009 Msa0919470:CDS 35.0%
! ATTAGAGTTGGTTGTCAAGT+TGG + chr6_2:51529089-51529108 Msa0919470:CDS 35.0%
! CGTTTTCTTCAATTCCTAAG+AGG + chr6_2:51529132-51529151 Msa0919470:CDS 35.0%
TCTTCAATTCCTAAGAGGTT+AGG + chr6_2:51529137-51529156 Msa0919470:CDS 35.0%
CTTCAATTCCTAAGAGGTTA+GGG + chr6_2:51529138-51529157 Msa0919470:CDS 35.0%
!! TCCAAAGGTGTTAGCTTTAA+TGG + chr6_2:51529200-51529219 Msa0919470:CDS 35.0%
!! CCAAAGGTGTTAGCTTTAAT+GGG + chr6_2:51529201-51529220 Msa0919470:CDS 35.0%
!!! TAGCTTTAATGGGTTTTCGT+CGG + chr6_2:51529211-51529230 Msa0919470:CDS 35.0%
AATCCTAGGCATGTTATGAT+TGG + chr6_2:51529362-51529381 Msa0919470:CDS 35.0%
ATACCAATCATAACATGCCT+AGG - chr6_2:51529368-51529387 None:intergenic 35.0%
GCATGTTATGATTGGTATAG+TGG + chr6_2:51529370-51529389 Msa0919470:CDS 35.0%
GTTATGATTGGTATAGTGGT+TGG + chr6_2:51529374-51529393 Msa0919470:CDS 35.0%
GCTTCAGAAAATTCTGTGTT+TGG + chr6_2:51529659-51529678 Msa0919470:CDS 35.0%
ACTGAAAATGAAGGGAAAGT+TGG + chr6_2:51529716-51529735 Msa0919470:CDS 35.0%
AAAATGAAGGGAAAGTTGGA+GGG + chr6_2:51529720-51529739 Msa0919470:CDS 35.0%
! ATAAATGGGTTCAGAAGAGT+AGG + chr6_2:51529774-51529793 Msa0919470:CDS 35.0%
GTTCAGAAGAGTAGGAAAAA+GGG + chr6_2:51529782-51529801 Msa0919470:CDS 35.0%
!! GCATTTGGATGGATTGAATT+GGG + chr6_2:51529835-51529854 Msa0919470:CDS 35.0%
! TGGATTGAATTGGGAGATTT+TGG + chr6_2:51529844-51529863 Msa0919470:CDS 35.0%
! ATTGAATTGGGAGATTTTGG+TGG + chr6_2:51529847-51529866 Msa0919470:CDS 35.0%
!! AAGCAAAAGGCATTAACCAT+AGG - chr6_2:51529881-51529900 None:intergenic 35.0%
GCAGAGATAGCAACTATTAT+TGG + chr6_2:51529956-51529975 Msa0919470:CDS 35.0%
AGCAACTATTATTGGACATG+AGG + chr6_2:51529964-51529983 Msa0919470:CDS 35.0%
!! GACATAGTGTTGACAATATC+AGG - chr6_2:51530428-51530447 None:intergenic 35.0%
!! CTATGTCATCGCTTTTGTTA+CGG + chr6_2:51530441-51530460 Msa0919470:CDS 35.0%
AAGGAGGAATAATTACCTTC+TGG - chr6_2:51530477-51530496 None:intergenic 35.0%
GGTTATAAAGAGAGAAAAGG+AGG - chr6_2:51530493-51530512 None:intergenic 35.0%
AGGAATAGAGCCAAATCATT+GGG - chr6_2:51530779-51530798 None:intergenic 35.0%
!! ATGTGTTTGAGTTGGTCTTA+AGG - chr6_2:51530803-51530822 None:intergenic 35.0%
! AATTATTTTCTGCACAGACC+TGG + chr6_2:51530942-51530961 Msa0919470:CDS 35.0%
CAAGAAACATGAAGGATGTA+TGG - chr6_2:51531083-51531102 None:intergenic 35.0%
AAACGCAACAAGAAACATGA+AGG - chr6_2:51531091-51531110 None:intergenic 35.0%
! TCTCTGATTTTGTTCAGTGT+TGG + chr6_2:51531490-51531509 Msa0919470:intron 35.0%
! GAAGTATTCATTAGCCCAAA+TGG + chr6_2:51531705-51531724 Msa0919470:intron 35.0%
GAAAACATGGTTATGCCATT+TGG - chr6_2:51531723-51531742 None:intergenic 35.0%
TACTAGAGAATTCATGCATC+AGG - chr6_2:51531807-51531826 None:intergenic 35.0%
TATGGATGTAATTTCGGAGT+AGG - chr6_2:51531852-51531871 None:intergenic 35.0%
CTCCAAAATCAGACTCATTA+TGG - chr6_2:51532147-51532166 None:intergenic 35.0%
! ATTTGTTTCTTGTTGGACTG+TGG + chr6_2:51532208-51532227 Msa0919470:intron 35.0%
! GGTTGGTTAGATAGTCAAAA+TGG - chr6_2:51532331-51532350 None:intergenic 35.0%
TACACAAATGTGGTGAATGA+TGG + chr6_2:51532436-51532455 Msa0919470:intron 35.0%
ACCTAAAGTCTACGAAAAGT+TGG + chr6_2:51532589-51532608 Msa0919470:CDS 35.0%
CCTAAAGTCTACGAAAAGTT+GGG + chr6_2:51532590-51532609 Msa0919470:CDS 35.0%
GAAAAGTTGGGAAAAATCTC+CGG + chr6_2:51532602-51532621 Msa0919470:CDS 35.0%
ATCTAAAAGCTTAGAATCGC+CGG - chr6_2:51532624-51532643 None:intergenic 35.0%
AAGAAAACGAGCAGAATTAC+TGG + chr6_2:51532667-51532686 Msa0919470:CDS 35.0%
! TGGTGTTGAAGGATTTCTTT+AGG + chr6_2:51532748-51532767 Msa0919470:CDS 35.0%
TTACTTGTGAAAGGGGAAAG+GGG - chr6_2:51528563-51528582 None:intergenic 40.0%
ATAGTGTGGGAGAAAATGGA+AGG - chr6_2:51528653-51528672 None:intergenic 40.0%
TGGTTCTTTCAATCATGGCT+TGG + chr6_2:51528766-51528785 Msa0919470:exon 40.0%
!! ATCATGGCTTGGTATAGAAG+AGG + chr6_2:51528777-51528796 Msa0919470:exon 40.0%
! AGAGGAAAGCTTGTTCTTGA+TGG + chr6_2:51528795-51528814 Msa0919470:CDS 40.0%
GGTTGCAAAATTCTCGAACT+AGG - chr6_2:51528963-51528982 None:intergenic 40.0%
! AGTTCGAGAATTTTGCAACC+TGG + chr6_2:51528963-51528982 Msa0919470:CDS 40.0%
! GTTCGAGAATTTTGCAACCT+GGG + chr6_2:51528964-51528983 Msa0919470:CDS 40.0%
GCAACCTGGGTATTTGAATT+TGG + chr6_2:51528977-51528996 Msa0919470:CDS 40.0%
GAACCCAAATTCAAATACCC+AGG - chr6_2:51528891-51528910 None:intergenic 40.0%
TCCTAAGAGGTTAGGGAAAA+TGG + chr6_2:51529145-51529164 Msa0919470:CDS 40.0%
CCTAAGAGGTTAGGGAAAAT+GGG + chr6_2:51529146-51529165 Msa0919470:CDS 40.0%
CCCATTAAAGCTAACACCTT+TGG - chr6_2:51529204-51529223 None:intergenic 40.0%
!!! CGTCGGTTTCGAAGAATTTT+AGG + chr6_2:51529228-51529247 Msa0919470:CDS 40.0%
! TGCAGCATTTTAAGCCAAGA+GGG + chr6_2:51529321-51529340 Msa0919470:CDS 40.0%
! ATTGGTATAGTGGTTGGTTC+AGG + chr6_2:51529380-51529399 Msa0919470:CDS 40.0%
AAATGCGTTCGCTTCGTATA+AGG - chr6_2:51529446-51529465 None:intergenic 40.0%
!! GATTTTGATGCCGAAAGAGA+TGG + chr6_2:51529466-51529485 Msa0919470:CDS 40.0%
AGACTCTTCTCCATCTCTTT+CGG - chr6_2:51529479-51529498 None:intergenic 40.0%
AAAGAGATGGAGAAGAGTCT+TGG + chr6_2:51529479-51529498 Msa0919470:CDS 40.0%
AAGAGATGGAGAAGAGTCTT+GGG + chr6_2:51529480-51529499 Msa0919470:CDS 40.0%
!! AAGATGAAGGCGGGTTTTAA+GGG + chr6_2:51529518-51529537 Msa0919470:CDS 40.0%
! ATCCTGAAAGTGTGAGAGTT+AGG + chr6_2:51529561-51529580 Msa0919470:CDS 40.0%
ATCCTAACTCTCACACTTTC+AGG - chr6_2:51529566-51529585 None:intergenic 40.0%
!! ATTATCGAAGCGTTGAAGAG+AGG + chr6_2:51529599-51529618 Msa0919470:CDS 40.0%
!! TTATCGAAGCGTTGAAGAGA+GGG + chr6_2:51529600-51529619 Msa0919470:CDS 40.0%
! TCTGTGTTTGGTGAAGAAAG+TGG + chr6_2:51529671-51529690 Msa0919470:CDS 40.0%
! CTGTGTTTGGTGAAGAAAGT+GGG + chr6_2:51529672-51529691 Msa0919470:CDS 40.0%
GAAAATGAAGGGAAAGTTGG+AGG + chr6_2:51529719-51529738 Msa0919470:CDS 40.0%
GGTTCAGAAGAGTAGGAAAA+AGG + chr6_2:51529781-51529800 Msa0919470:CDS 40.0%
!! CGCATTTGGATGGATTGAAT+TGG + chr6_2:51529834-51529853 Msa0919470:CDS 40.0%
! GTTAATGCCTTTTGCTTACC+TGG + chr6_2:51529884-51529903 Msa0919470:CDS 40.0%
TGGGAAGATAGTCGTGTTTA+CGG + chr6_2:51529907-51529926 Msa0919470:CDS 40.0%
AGTCTTAACACTTTGCTGCT+TGG + chr6_2:51530302-51530321 Msa0919470:intron 40.0%
AGCTGAATTAGTGGAACTAG+AGG + chr6_2:51530659-51530678 Msa0919470:intron 40.0%
GCTACACGACTCAACATATA+GGG - chr6_2:51530738-51530757 None:intergenic 40.0%
TGCTACACGACTCAACATAT+AGG - chr6_2:51530739-51530758 None:intergenic 40.0%
! TTTTGCCCTTCCCAATGATT+TGG + chr6_2:51530766-51530785 Msa0919470:intron 40.0%
TAGAGCCAAATCATTGGGAA+GGG - chr6_2:51530774-51530793 None:intergenic 40.0%
ATAGAGCCAAATCATTGGGA+AGG - chr6_2:51530775-51530794 None:intergenic 40.0%
CAGGAATAGAGCCAAATCAT+TGG - chr6_2:51530780-51530799 None:intergenic 40.0%
! CATAGTCAGAGGTGTAAACT+CGG - chr6_2:51530894-51530913 None:intergenic 40.0%
! TGCTCGAGTTATCTCGTTTT+GGG - chr6_2:51530921-51530940 None:intergenic 40.0%
AGTCATACCAAGTCCATACA+AGG - chr6_2:51530971-51530990 None:intergenic 40.0%
TGTCTGTTCAGTGTGTTTGT+TGG + chr6_2:51531408-51531427 Msa0919470:intron 40.0%
GAAGATTAAACGGAAACCCT+AGG - chr6_2:51532240-51532259 None:intergenic 40.0%
TAACCAACCATGTTCTGACA+TGG + chr6_2:51532342-51532361 Msa0919470:intron 40.0%
AAAGTAGCCATGTCAGAACA+TGG - chr6_2:51532352-51532371 None:intergenic 40.0%
! CCCAACTTTTCGTAGACTTT+AGG - chr6_2:51532593-51532612 None:intergenic 40.0%
! TTTTCTTCCAGATGGATGAG+TGG - chr6_2:51532654-51532673 None:intergenic 40.0%
AAGACTGTAAGAGAAGGACA+TGG + chr6_2:51532728-51532747 Msa0919470:CDS 40.0%
ACATACACAGACAAGTATGG+TGG - chr6_2:51532843-51532862 None:intergenic 40.0%
! CCCATTTTCCCTAACCTCTT+AGG - chr6_2:51529149-51529168 None:intergenic 45.0%
! AATATTGGGGTGGGTTCCAA+AGG + chr6_2:51529185-51529204 Msa0919470:CDS 45.0%
! GTGCAGCATTTTAAGCCAAG+AGG + chr6_2:51529320-51529339 Msa0919470:CDS 45.0%
!! AACCAATTTTTGGGCCCTCT+TGG - chr6_2:51529338-51529357 None:intergenic 45.0%
AGAGATGGAGAAGAGTCTTG+GGG + chr6_2:51529481-51529500 Msa0919470:CDS 45.0%
GAGCGAGTTTGAGAAGATGA+AGG + chr6_2:51529505-51529524 Msa0919470:CDS 45.0%
CGAGTTTGAGAAGATGAAGG+CGG + chr6_2:51529508-51529527 Msa0919470:CDS 45.0%
GAGTTTGAGAAGATGAAGGC+GGG + chr6_2:51529509-51529528 Msa0919470:CDS 45.0%
!! GAAGATGAAGGCGGGTTTTA+AGG + chr6_2:51529517-51529536 Msa0919470:CDS 45.0%
!!! AGATGAAGGCGGGTTTTAAG+GGG + chr6_2:51529519-51529538 Msa0919470:CDS 45.0%
ACACTTTCAGGATGCATTGC+AGG - chr6_2:51529554-51529573 None:intergenic 45.0%
GTTGAAGAGAGGGTTGAGTA+AGG + chr6_2:51529610-51529629 Msa0919470:CDS 45.0%
GGTTGAGTAAGGAGAATGTG+TGG + chr6_2:51529621-51529640 Msa0919470:CDS 45.0%
! GTTTGGTGAAGAAAGTGGGA+AGG + chr6_2:51529676-51529695 Msa0919470:CDS 45.0%
AAGGGAAAGTTGGAGGGAAT+TGG + chr6_2:51529726-51529745 Msa0919470:CDS 45.0%
CATCAAGAACCTCATCTTCC+CGG - chr6_2:51529754-51529773 None:intergenic 45.0%
GCAACCTTATACGTCGCATT+TGG + chr6_2:51529820-51529839 Msa0919470:CDS 45.0%
CCATCCAAATGCGACGTATA+AGG - chr6_2:51529827-51529846 None:intergenic 45.0%
CCTTATACGTCGCATTTGGA+TGG + chr6_2:51529824-51529843 Msa0919470:CDS 45.0%
!!! TTGGGAGATTTTGGTGGTGA+AGG + chr6_2:51529853-51529872 Msa0919470:CDS 45.0%
!! TTTGGTGGTGAAGGATCCTA+TGG + chr6_2:51529862-51529881 Msa0919470:CDS 45.0%
! AATGCCTTTTGCTTACCTGG+TGG + chr6_2:51529887-51529906 Msa0919470:CDS 45.0%
! ATGCCTTTTGCTTACCTGGT+GGG + chr6_2:51529888-51529907 Msa0919470:CDS 45.0%
GGGAAGATAGTCGTGTTTAC+GGG + chr6_2:51529908-51529927 Msa0919470:CDS 45.0%
! CACTTTGCTGCTTGGTGATT+AGG + chr6_2:51530310-51530329 Msa0919470:intron 45.0%
! TTGCTGCTTGGTGATTAGGT+TGG + chr6_2:51530314-51530333 Msa0919470:intron 45.0%
!! TGATTAGGTTGGACATGCTG+TGG + chr6_2:51530325-51530344 Msa0919470:intron 45.0%
!! GTTTGAGTTGGTCTTAAGGC+AGG - chr6_2:51530799-51530818 None:intergenic 45.0%
!! TTTTGGGAGGTCATAGTCAG+AGG - chr6_2:51530905-51530924 None:intergenic 45.0%
!! TCGAGTTATCTCGTTTTGGG+AGG - chr6_2:51530918-51530937 None:intergenic 45.0%
! CTGCTCGAGTTATCTCGTTT+TGG - chr6_2:51530922-51530941 None:intergenic 45.0%
CTGTTGCTGTGTATCATCTC+CGG + chr6_2:51531161-51531180 Msa0919470:CDS 45.0%
! TTTTCTTGCGTTTGCGTGTC+AGG + chr6_2:51531229-51531248 Msa0919470:CDS 45.0%
!! GAGAGGGCATTACGAAAACA+TGG - chr6_2:51531736-51531755 None:intergenic 45.0%
!! TTGGACTGTGGATTAGTCCT+AGG + chr6_2:51532220-51532239 Msa0919470:intron 45.0%
!! TGGACTGTGGATTAGTCCTA+GGG + chr6_2:51532221-51532240 Msa0919470:intron 45.0%
TAGCCATGTCAGAACATGGT+TGG - chr6_2:51532348-51532367 None:intergenic 45.0%
CTTCTATTAGTTGCATCCGC+CGG + chr6_2:51532548-51532567 Msa0919470:CDS 45.0%
TATTTCGCCACTCATCCATC+TGG + chr6_2:51532644-51532663 Msa0919470:CDS 45.0%
! TCTGCTCGTTTTCTTCCAGA+TGG - chr6_2:51532662-51532681 None:intergenic 45.0%
!! AGAATTACTGGCTCAAGCTC+AGG + chr6_2:51532679-51532698 Msa0919470:CDS 45.0%
! AGAGAAGGACATGGTGTTGA+AGG + chr6_2:51532737-51532756 Msa0919470:CDS 45.0%
ACAGACAAGTGTTCCAACTG+TGG + chr6_2:51532811-51532830 Msa0919470:three_prime_UTR 45.0%
CAGACAAGTGTTCCAACTGT+GGG + chr6_2:51532812-51532831 Msa0919470:three_prime_UTR 45.0%
AGGGGAAAGGGGAAGAAGAA+TGG - chr6_2:51528552-51528571 None:intergenic 50.0%
AGCCAAGAGGGCCCAAAAAT+TGG + chr6_2:51529333-51529352 Msa0919470:CDS 50.0%
AAGTTGGAGGGAATTGGCAC+CGG + chr6_2:51529732-51529751 Msa0919470:CDS 50.0%
CTTCCCACCAGGTAAGCAAA+AGG - chr6_2:51529894-51529913 None:intergenic 50.0%
AACACGACTATCTTCCCACC+AGG - chr6_2:51529905-51529924 None:intergenic 50.0%
CATCTTCTCAGCACTGTGTC+TGG - chr6_2:51530351-51530370 None:intergenic 50.0%
TACGGCTACCTTTCTCCAGA+AGG + chr6_2:51530459-51530478 Msa0919470:CDS 50.0%
ACAGACCTGGATGCCTTGTA+TGG + chr6_2:51530955-51530974 Msa0919470:CDS 50.0%
! CAAGTCCATACAAGGCATCC+AGG - chr6_2:51530963-51530982 None:intergenic 50.0%
CTGGATGCCTTGTATGGACT+TGG + chr6_2:51530961-51530980 Msa0919470:CDS 50.0%
ACAGCAACAGCATTGTGCAC+AGG - chr6_2:51531151-51531170 None:intergenic 50.0%
ATGCAACACTCAGCATGCCA+GGG - chr6_2:51531194-51531213 None:intergenic 50.0%
AATGCAACACTCAGCATGCC+AGG - chr6_2:51531195-51531214 None:intergenic 50.0%
! TAGACTTTAGGTGCCACACG+TGG - chr6_2:51532581-51532600 None:intergenic 50.0%
ATGGTGGCATTTCCCACAGT+TGG - chr6_2:51532827-51532846 None:intergenic 50.0%
AGTTGGAGGGAATTGGCACC+GGG + chr6_2:51529733-51529752 Msa0919470:CDS 55.0%
! GAATTGGCACCGGGAAGATG+AGG + chr6_2:51529742-51529761 Msa0919470:CDS 55.0%
AGGAAAAAGGGTCACGAGCG+TGG + chr6_2:51529794-51529813 Msa0919470:CDS 55.0%
GGAAAAAGGGTCACGAGCGT+GGG + chr6_2:51529795-51529814 Msa0919470:CDS 55.0%
! ACTGGCTCAAGCTCAGGTGA+TGG + chr6_2:51532685-51532704 Msa0919470:CDS 55.0%
TCATCTCCGGCATTCCTCCC+TGG + chr6_2:51531174-51531193 Msa0919470:CDS 60.0%
AGCATGCCAGGGAGGAATGC+CGG - chr6_2:51531183-51531202 None:intergenic 60.0%
CAACACTCAGCATGCCAGGG+AGG - chr6_2:51531191-51531210 None:intergenic 60.0%
TGCCACACGTGGATCGTAGC+CGG - chr6_2:51532570-51532589 None:intergenic 60.0%
CACACGTGGATCGTAGCCGG+CGG - chr6_2:51532567-51532586 None:intergenic 65.0%
! CGCCGGCTACGATCCACGTG+TGG + chr6_2:51532565-51532584 Msa0919470:CDS 70.0%
Chromosome Type Strat End Strand Name
chr6_2 gene 51528513 51532944 51528513 ID=Msa0919470;Name=Msa0919470
chr6_2 mRNA 51528513 51532944 51528513 ID=Msa0919470-mRNA-1;Parent=Msa0919470;Name=Msa0919470-mRNA-1;_AED=0.06;_eAED=0.06;_QI=267|0.25|0.6|0.6|1|1|5|175|625
chr6_2 exon 51528513 51529985 51528513 ID=Msa0919470-mRNA-1:exon:7696;Parent=Msa0919470-mRNA-1
chr6_2 exon 51530332 51530480 51530332 ID=Msa0919470-mRNA-1:exon:7697;Parent=Msa0919470-mRNA-1
chr6_2 exon 51530847 51530982 51530847 ID=Msa0919470-mRNA-1:exon:7698;Parent=Msa0919470-mRNA-1
chr6_2 exon 51531114 51531250 51531114 ID=Msa0919470-mRNA-1:exon:7699;Parent=Msa0919470-mRNA-1
chr6_2 exon 51532520 51532944 51532520 ID=Msa0919470-mRNA-1:exon:7700;Parent=Msa0919470-mRNA-1
chr6_2 five_prime_UTR 51528513 51528779 51528513 ID=Msa0919470-mRNA-1:five_prime_utr;Parent=Msa0919470-mRNA-1
chr6_2 CDS 51528780 51529985 51528780 ID=Msa0919470-mRNA-1:cds;Parent=Msa0919470-mRNA-1
chr6_2 CDS 51530332 51530480 51530332 ID=Msa0919470-mRNA-1:cds;Parent=Msa0919470-mRNA-1
chr6_2 CDS 51530847 51530982 51530847 ID=Msa0919470-mRNA-1:cds;Parent=Msa0919470-mRNA-1
chr6_2 CDS 51531114 51531250 51531114 ID=Msa0919470-mRNA-1:cds;Parent=Msa0919470-mRNA-1
chr6_2 CDS 51532520 51532769 51532520 ID=Msa0919470-mRNA-1:cds;Parent=Msa0919470-mRNA-1
chr6_2 three_prime_UTR 51532770 51532944 51532770 ID=Msa0919470-mRNA-1:three_prime_utr;Parent=Msa0919470-mRNA-1
Gene Sequence

>Msa0919470

ATGGCTTGGTATAGAAGAGGAAAGCTTGTTCTTGATGGTTTTCATAACTTGGCTTCTAGGGTTTCATCCCATAATCCAATTTTTCAGCCTAGTAACAGAATTTTGCAATCTGGGTATTTGAATTTGGGTTCTAAAGATGCTAGCTTTAATGGGTTTGCTTCGTTTTCTTCAATTTTTCAACCTAGTTCGAGAATTTTGCAACCTGGGTATTTGAATTTGGGTTCTAAAGGTGGTAACTTTAATGGGTTTTCTTCATTTTCTTCGATTTCTAATAGATTAGGAAAAATGGGTTTTGAAAATAATAAGAATATTAGAGTTGGTTGTCAAGTTGGTAACTTTAATGGGTTTTCTTCGTTTTCTTCAATTCCTAAGAGGTTAGGGAAAATGGGTTTTGAGATAAATAAGAATATTGGGGTGGGTTCCAAAGGTGTTAGCTTTAATGGGTTTTCGTCGGTTTCGAAGAATTTTAGGAGATTAGACAAAAGGGGTTTTGAAGTTAATAAGAATTTTAGGAGATTTTACTATGTTGATCCACAAAATGTGCAGCATTTTAAGCCAAGAGGGCCCAAAAATTGGTTTCAGAATCCTAGGCATGTTATGATTGGTATAGTGGTTGGTTCAGGTGTTTTTATAACTGTGTATTTTGGGAATATGGAAACTGTTCCTTATACGAAGCGAACGCATTTGATTTTGATGCCGAAAGAGATGGAGAAGAGTCTTGGGGAGAGCGAGTTTGAGAAGATGAAGGCGGGTTTTAAGGGGAAATTGTTACCTGCAATGCATCCTGAAAGTGTGAGAGTTAGGATGATAGCGAATGATATTATCGAAGCGTTGAAGAGAGGGTTGAGTAAGGAGAATGTGTGGAGTGATATAGATTATGCTTCAGAAAATTCTGTGTTTGGTGAAGAAAGTGGGAAGGAGACGATTAATGCATTGACTGAAAATGAAGGGAAAGTTGGAGGGAATTGGCACCGGGAAGATGAGGTTCTTGATGATAAATGGGTTCAGAAGAGTAGGAAAAAGGGTCACGAGCGTGGGTCGCAACCTTATACGTCGCATTTGGATGGATTGAATTGGGAGATTTTGGTGGTGAAGGATCCTATGGTTAATGCCTTTTGCTTACCTGGTGGGAAGATAGTCGTGTTTACGGGTTTGCTTGAACATTTTAGAAGTGATGCAGAGATAGCAACTATTATTGGACATGAGGTTGGACATGCTGTGGCCAGACACAGTGCTGAGAAGATGACAAAGAATATGTGGGTTTTAATTCTAAACTTCGTACTTTATCAATTCGTCACACCTGATATTGTCAACACTATGTCATCGCTTTTGTTACGGCTACCTTTCTCCAGAAGTATGAGCATGGTTGTCAAACTCGTTAGTCAACTCGTAGATTCAGCCGAGTTTACACCTCTGACTATGACCTCCCAAAACGAGATAACTCGAGCAGAATTATTTTCTGCACAGACCTGGATGCCTTGTATGGACTTGTATAATACAATTCTAATTGCAACTATTTCTTATTCCTGTGCACAATGCTGTTGCTGTGTATCATCTCCGGCATTCCTCCCTGGCATGCTGAGTGTTGCATTGTGTTTCATCGCTATTTTCTTGCGTTTGCGTGTCAGGATGGAAATTGAAGCTGATTACATTGGTCTTCTATTAGTTGCATCCGCCGGCTACGATCCACGTGTGGCACCTAAAGTCTACGAAAAGTTGGGAAAAATCTCCGGCGATTCTAAGCTTTTAGATTATTTCGCCACTCATCCATCTGGAAGAAAACGAGCAGAATTACTGGCTCAAGCTCAGGTGATGGATGAAGCTCTTACTATATATAAGACTGTAAGAGAAGGACATGGTGTTGAAGGATTTCTTTAG

Protein sequence

>Msa0919470

MAWYRRGKLVLDGFHNLASRVSSHNPIFQPSNRILQSGYLNLGSKDASFNGFASFSSIFQPSSRILQPGYLNLGSKGGNFNGFSSFSSISNRLGKMGFENNKNIRVGCQVGNFNGFSSFSSIPKRLGKMGFEINKNIGVGSKGVSFNGFSSVSKNFRRLDKRGFEVNKNFRRFYYVDPQNVQHFKPRGPKNWFQNPRHVMIGIVVGSGVFITVYFGNMETVPYTKRTHLILMPKEMEKSLGESEFEKMKAGFKGKLLPAMHPESVRVRMIANDIIEALKRGLSKENVWSDIDYASENSVFGEESGKETINALTENEGKVGGNWHREDEVLDDKWVQKSRKKGHERGSQPYTSHLDGLNWEILVVKDPMVNAFCLPGGKIVVFTGLLEHFRSDAEIATIIGHEVGHAVARHSAEKMTKNMWVLILNFVLYQFVTPDIVNTMSSLLLRLPFSRSMSMVVKLVSQLVDSAEFTPLTMTSQNEITRAELFSAQTWMPCMDLYNTILIATISYSCAQCCCCVSSPAFLPGMLSVALCFIAIFLRLRVRMEIEADYIGLLLVASAGYDPRVAPKVYEKLGKISGDSKLLDYFATHPSGRKRAELLAQAQVMDEALTIYKTVREGHGVEGFL*