AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1373350


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1373350 MtrunA17_Chr1g0213411 89.706 544 11 8 1 530 1 513 0.0 826
Msa1373350 MtrunA17_Chr6g0467951 94.309 123 6 1 409 530 17 139 9.59e-72 225
Msa1373350 MtrunA17_Chr2g0308701 55.981 209 74 5 157 361 80 274 5.27e-67 218
Msa1373350 MtrunA17_Chr2g0308691 56.284 183 67 5 159 337 81 254 8.31e-52 177
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1373350 AT5G19900.3 50.988 506 161 21 1 463 1 462 9.96e-125 374
Msa1373350 AT5G19900.2 50.988 506 161 21 1 463 1 462 9.96e-125 374
Msa1373350 AT5G19900.4 50.988 506 161 21 1 463 1 462 9.96e-125 374
Msa1373350 AT5G19900.5 50.988 506 161 21 1 463 1 462 9.96e-125 374
Msa1373350 AT5G19900.1 50.988 506 161 21 1 463 1 462 9.96e-125 374

Find 160 sgRNAs with CRISPR-Local

Find 334 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTAGCATTAAACTTCTTCTT+AGG 0.137829 tig0019430:+31483 None:intergenic
AGGAAATTAGGTTTGATATT+AGG 0.152951 tig0019430:+31693 None:intergenic
TGAGATTAAAAGCAATAAAT+TGG 0.191161 tig0019430:-30686 Msa1373350:CDS
TATTATATCCACCACGATTC+TGG 0.199596 tig0019430:+31772 None:intergenic
TAGTCACCACCTCCATAATT+AGG 0.203590 tig0019430:+31123 None:intergenic
GGAAATTAGGTTTGATATTA+GGG 0.217644 tig0019430:+31694 None:intergenic
TGGTAACCAAGAATATTATT+TGG 0.220572 tig0019430:+31564 None:intergenic
ACTATTCCAAATAATATTCT+TGG 0.229684 tig0019430:-31570 Msa1373350:CDS
GAGATGATTTACCCTAATTA+TGG 0.281017 tig0019430:-31135 Msa1373350:CDS
GGGTTCTGAAATTTCATGTT+AGG 0.308757 tig0019430:+31714 None:intergenic
TTCGTCCCGGCTTGGAATTA+AGG 0.311625 tig0019430:+31673 None:intergenic
CAGCCTAATCAAACCCTTCA+TGG 0.312973 tig0019430:+31272 None:intergenic
GGCTTGGAATTAAGGAAATT+AGG 0.314913 tig0019430:+31681 None:intergenic
TTCTTAATGGAGAGGGAGTT+AGG 0.317672 tig0019430:-31012 Msa1373350:CDS
GAATATTATTTGGAATAGTT+TGG 0.330986 tig0019430:+31574 None:intergenic
GTCTCAACAGCAGCTTCCTC+TGG 0.346933 tig0019430:-31739 Msa1373350:CDS
AAGCGAGGTGGTTTCAAATC+AGG 0.354951 tig0019430:-30710 Msa1373350:CDS
GAGTGGGGTGTGGATGGTTA+CGG 0.357631 tig0019430:-31297 Msa1373350:CDS
GAAGTAATAATAACAATAAC+TGG 0.359197 tig0019430:-31653 Msa1373350:CDS
ATAATAATGTCTTAGAGAAT+AGG 0.363278 tig0019430:-31101 Msa1373350:CDS
GTTGTTGTTGCTGCTGAGAT+TGG 0.364305 tig0019430:+31877 None:intergenic
TTTCTTAGCACGGATAATAA+AGG 0.365902 tig0019430:+31428 None:intergenic
GTCTCCTTCTAGGGAGATGT+TGG 0.372087 tig0019430:-31337 Msa1373350:CDS
GGATTCTCATATAGCACAAT+TGG 0.387143 tig0019430:-31067 Msa1373350:CDS
CAACAATGTTTGACAGATGA+AGG 0.392386 tig0019430:-30598 Msa1373350:CDS
TCATCTGAGGATTCATCATC+TGG 0.393917 tig0019430:+31934 None:intergenic
AGTGGGGTGTGGATGGTTAC+GGG 0.394300 tig0019430:-31296 Msa1373350:CDS
GCGACAAGCGCAAAGATATT+AGG 0.394743 tig0019430:-31614 Msa1373350:CDS
TCCCTAGAAGGAGACAAAAT+AGG 0.401100 tig0019430:+31345 None:intergenic
TAGCATTAAACTTCTTCTTA+GGG 0.403904 tig0019430:+31484 None:intergenic
TAATAATGTCTTAGAGAATA+GGG 0.407085 tig0019430:-31100 Msa1373350:CDS
GGTCCATGAAGGGTTTGATT+AGG 0.415891 tig0019430:-31275 Msa1373350:CDS
TCTCAAACCTGCTCAAATCT+TGG 0.417553 tig0019430:+31154 None:intergenic
TGATTTGAAACCACCTCGCT+TGG 0.418344 tig0019430:+30712 None:intergenic
GAGATTAAAAGCAATAAATT+GGG 0.430395 tig0019430:-30685 Msa1373350:CDS
TCTCCCAACATCTCCCTAGA+AGG 0.431587 tig0019430:+31333 None:intergenic
AGAGAATAGGGTAGATGATC+AGG 0.432490 tig0019430:-31088 Msa1373350:CDS
ATTATCCGTGCTAAGAAATC+CGG 0.437129 tig0019430:-31423 Msa1373350:CDS
AGTCACCACCTCCATAATTA+GGG 0.439364 tig0019430:+31124 None:intergenic
GAAGCAAATGAAAGTATAGA+TGG 0.442989 tig0019430:-30490 Msa1373350:CDS
GGGTCTGATGTTCCTGTCAT+GGG 0.445316 tig0019430:-30883 Msa1373350:CDS
ATTATATCCACCACGATTCT+GGG 0.445373 tig0019430:+31773 None:intergenic
GATGAGGAGGATGGTGGTAG+TGG 0.447179 tig0019430:-31228 Msa1373350:CDS
TTATTTGGAATAGTTTGGTT+GGG 0.447922 tig0019430:+31579 None:intergenic
GGAAGAGAATTTGACATTGA+GGG 0.450626 tig0019430:-31043 Msa1373350:CDS
ATAAAGGAAGTGGTATTCCT+AGG 0.456425 tig0019430:+31444 None:intergenic
AGGAAGAGAATTTGACATTG+AGG 0.457373 tig0019430:-31044 Msa1373350:CDS
GAATCCTCCTCCGCCTCCTC+AGG 0.458735 tig0019430:-31910 Msa1373350:CDS
ATGAGGAAGTGGTGGAGAAT+GGG 0.461656 tig0019430:-30927 Msa1373350:CDS
AGTGCAAGAATCAGATAGTT+GGG 0.464802 tig0019430:-30447 Msa1373350:CDS
TCTCCTTCTAGGGAGATGTT+GGG 0.468734 tig0019430:-31336 Msa1373350:CDS
GTGGTATTCCTAGGGGCATA+AGG 0.469092 tig0019430:+31453 None:intergenic
ATTATTTGGAATAGTTTGGT+TGG 0.471669 tig0019430:+31578 None:intergenic
GGCTTGACCAAGATTTGAGC+AGG 0.472253 tig0019430:-31161 Msa1373350:CDS
ATCCACACCCCACTCTTCCT+TGG 0.472431 tig0019430:+31305 None:intergenic
TCTTAATGGAGAGGGAGTTA+GGG 0.473595 tig0019430:-31011 Msa1373350:CDS
ACTTTCATTTGCTTCTTCGT+CGG 0.476598 tig0019430:+30498 None:intergenic
AATGAGGAAGTGGTGGAGAA+TGG 0.488145 tig0019430:-30928 Msa1373350:CDS
GCGCAAAGATATTAGGAGAA+TGG 0.488843 tig0019430:-31607 Msa1373350:CDS
TAACTTAACAGCAACATCAT+TGG 0.490256 tig0019430:+30795 None:intergenic
AACGGATAAATCATCATCTC+TGG 0.492193 tig0019430:+30408 None:intergenic
AGGAACATGTGGAGGTGGAG+AGG 0.494464 tig0019430:-31185 Msa1373350:CDS
TAAAGGAAGTGGTATTCCTA+GGG 0.494535 tig0019430:+31445 None:intergenic
ATTACCTGAGGAGGCGGAGG+AGG 0.497462 tig0019430:+31906 None:intergenic
GAGTGCAAGAATCAGATAGT+TGG 0.497730 tig0019430:-30448 Msa1373350:CDS
GTGGATATAATAACAAGGTT+TGG 0.501034 tig0019430:-31761 Msa1373350:CDS
GTTTCTTGAGAGGCAAAACC+AGG 0.501187 tig0019430:-30968 Msa1373350:CDS
GGAAGCACCGCGGGAGTCAC+AGG 0.503477 tig0019430:+31372 None:intergenic
AGACATGGCCAAGGAAGAGT+GGG 0.504798 tig0019430:-31313 Msa1373350:CDS
CAATAACTGGAAGGGAAAGA+AGG 0.508608 tig0019430:-31640 Msa1373350:CDS
AAGGAAGAGTGGGGTGTGGA+TGG 0.511058 tig0019430:-31303 Msa1373350:CDS
GGGAGTTAGGGGATCTGCGA+AGG 0.512859 tig0019430:-30999 Msa1373350:CDS
GCTGTTAAGTTAGACAATGA+TGG 0.518940 tig0019430:-30784 Msa1373350:CDS
TAGGGAGATGTTGGGAGACA+TGG 0.529357 tig0019430:-31328 Msa1373350:CDS
TTCTGGGTCATCATCGGAGG+AGG 0.530403 tig0019430:+31789 None:intergenic
ATTTACCCTAATTATGGAGG+TGG 0.532452 tig0019430:-31129 Msa1373350:CDS
TTGTTCTCAATTCCCATGAC+AGG 0.534410 tig0019430:+30871 None:intergenic
TGGGTCATCATCGGAGGAGG+AGG 0.536454 tig0019430:+31792 None:intergenic
GGATGGTTACGGGTCCATGA+AGG 0.537436 tig0019430:-31286 Msa1373350:CDS
TAATTTCCTTAATTCCAAGC+CGG 0.537774 tig0019430:-31679 Msa1373350:CDS
GGGGTCTGATGTTCCTGTCA+TGG 0.540719 tig0019430:-30884 Msa1373350:CDS
TTGTTATTATTACTTCGTCC+CGG 0.541685 tig0019430:+31660 None:intergenic
AGCACGGATAATAAAGGAAG+TGG 0.542401 tig0019430:+31434 None:intergenic
AATTTCCTTAATTCCAAGCC+GGG 0.542484 tig0019430:-31678 Msa1373350:CDS
AAAAGCAATAAATTGGGAGG+TGG 0.545853 tig0019430:-30679 Msa1373350:CDS
TTAATTACCTGAGGAGGCGG+AGG 0.547707 tig0019430:+31903 None:intergenic
TAACATCTTCAACCACAGCC+TGG 0.547796 tig0019430:+30950 None:intergenic
GATGGTTACGGGTCCATGAA+GGG 0.550466 tig0019430:-31285 Msa1373350:CDS
ACCGCGGGAGTCACAGGACA+AGG 0.556762 tig0019430:+31378 None:intergenic
TTCTCATATAGCACAATTGG+AGG 0.557751 tig0019430:-31064 Msa1373350:CDS
CCACGATTCTGGGTCATCAT+CGG 0.558262 tig0019430:+31783 None:intergenic
GAAGGAGACAAAATAGGTGT+AGG 0.563617 tig0019430:+31351 None:intergenic
TGAGATGGTTGATTCAATGC+TGG 0.564051 tig0019430:-30845 Msa1373350:CDS
GATTTGCTCCTTATGCCCCT+AGG 0.564214 tig0019430:-31461 Msa1373350:CDS
AATAATAACAATAACTGGAA+GGG 0.564282 tig0019430:-31648 Msa1373350:CDS
TTGTTAATTACCTGAGGAGG+CGG 0.568063 tig0019430:+31900 None:intergenic
TGTGGAGGAACATGTGGAGG+TGG 0.568876 tig0019430:-31190 Msa1373350:CDS
ATGAGGAGGATGGTGGTAGT+GGG 0.569684 tig0019430:-31227 Msa1373350:CDS
TGAGAGGCAAAACCAGGCTG+TGG 0.571139 tig0019430:-30962 Msa1373350:CDS
GAGACATGGCCAAGGAAGAG+TGG 0.574369 tig0019430:-31314 Msa1373350:CDS
AACATGTGGAGGTGGAGAGG+AGG 0.577247 tig0019430:-31182 Msa1373350:CDS
GGCCAAGGAAGAGTGGGGTG+TGG 0.578600 tig0019430:-31307 Msa1373350:CDS
GGAGGATGCTGTTTCTTGAG+AGG 0.580553 tig0019430:-30978 Msa1373350:CDS
TGAAGATGTTAATGAGGAAG+TGG 0.582378 tig0019430:-30938 Msa1373350:CDS
TCATCATCTTCATCTGCGGT+TGG 0.583649 tig0019430:+31835 None:intergenic
GGTCTGATAATGAAAGTGAA+GGG 0.586263 tig0019430:-30906 Msa1373350:CDS
GTTGATTCAATGCTGGAAAG+TGG 0.587761 tig0019430:-30838 Msa1373350:CDS
TAATAATAACAATAACTGGA+AGG 0.588600 tig0019430:-31649 Msa1373350:CDS
TGGTTGTTAATTACCTGAGG+AGG 0.589919 tig0019430:+31897 None:intergenic
CTTAATGGAGAGGGAGTTAG+GGG 0.592459 tig0019430:-31010 Msa1373350:CDS
ATTTATCCGTTGCTCAGTAG+CGG 0.594666 tig0019430:-30396 None:intergenic
GATTGTAACTCGTGAAGAGT+AGG 0.597765 tig0019430:+31537 None:intergenic
GGGTCTGATAATGAAAGTGA+AGG 0.598925 tig0019430:-30907 Msa1373350:CDS
AGTTAGGGGATCTGCGAAGG+AGG 0.600321 tig0019430:-30996 Msa1373350:CDS
AGATGTTAATGAGGAAGTGG+TGG 0.601396 tig0019430:-30935 Msa1373350:CDS
GAGTGATGTGGAGGAACATG+TGG 0.602651 tig0019430:-31196 Msa1373350:CDS
CTTTATGTTTGATGATGTGA+AGG 0.604414 tig0019430:-30656 Msa1373350:CDS
ATGATTTACCCTAATTATGG+AGG 0.605797 tig0019430:-31132 Msa1373350:CDS
TGTTCATGATGATGAAGATG+AGG 0.609691 tig0019430:-31244 Msa1373350:CDS
ACTCGTGAAGAGTAGGTGGT+TGG 0.610555 tig0019430:+31544 None:intergenic
AATTGAGAACAATGTTGAGA+TGG 0.615362 tig0019430:-30860 Msa1373350:CDS
GATTGGTTGTTAATTACCTG+AGG 0.617500 tig0019430:+31894 None:intergenic
ATAGGTGTAGGAAGCACCGC+GGG 0.617806 tig0019430:+31363 None:intergenic
CACGAGCGATGCAATACCAC+CGG 0.619944 tig0019430:+31404 None:intergenic
TGAGTCATCATCTTCATCTG+CGG 0.622247 tig0019430:+31831 None:intergenic
ATTAAAAGCAATAAATTGGG+AGG 0.623697 tig0019430:-30682 Msa1373350:CDS
GGAAGAGTCTGTTCCAAGCG+AGG 0.624493 tig0019430:-30725 Msa1373350:CDS
TGGGTCGAGTGAGAGTGATG+TGG 0.627431 tig0019430:-31208 Msa1373350:CDS
AGATGGCTTAGTGAGTGAGA+CGG 0.627723 tig0019430:-30473 Msa1373350:CDS
GGAGGAGGATTCATCATCTG+AGG 0.632835 tig0019430:+31921 None:intergenic
GTCTGATAATGAAAGTGAAG+GGG 0.635873 tig0019430:-30905 Msa1373350:CDS
TGTAACTCGTGAAGAGTAGG+TGG 0.636079 tig0019430:+31540 None:intergenic
TGATGATGTGAAGGAAGAGA+AGG 0.637450 tig0019430:-30647 Msa1373350:CDS
ATCCGTGCTAAGAAATCCGG+TGG 0.644195 tig0019430:-31420 Msa1373350:CDS
TACCACCGGATTTCTTAGCA+CGG 0.644469 tig0019430:+31418 None:intergenic
GATGATGAAGATGAGGAGGA+TGG 0.647257 tig0019430:-31237 Msa1373350:CDS
TTGATTCAATGCTGGAAAGT+GGG 0.647613 tig0019430:-30837 Msa1373350:CDS
CGATTCTGGGTCATCATCGG+AGG 0.647939 tig0019430:+31786 None:intergenic
GATGAAGATGAGGAGGATGG+TGG 0.648811 tig0019430:-31234 Msa1373350:CDS
AATTTCATGTTAGGATCCAG+AGG 0.650747 tig0019430:+31723 None:intergenic
CCGATGATGACCCAGAATCG+TGG 0.651397 tig0019430:-31783 Msa1373350:CDS
CGGCTTCCGCTACTGAGCAA+CGG 0.652542 tig0019430:+30390 None:intergenic
TGTGGTTGAAGATGTTAATG+AGG 0.653979 tig0019430:-30944 Msa1373350:CDS
CTTGTGAATCGAAAAGAGAG+TGG 0.654418 tig0019430:-30556 Msa1373350:CDS
GATGGAGTATCAGAAGCTGA+AGG 0.655345 tig0019430:-30766 Msa1373350:CDS
AGAGTCTGTTCCAAGCGAGG+TGG 0.657368 tig0019430:-30722 Msa1373350:CDS
TCTGATAATGAAAGTGAAGG+GGG 0.659594 tig0019430:-30904 Msa1373350:CDS
TGGGAGAAATGAAAACATTG+AGG 0.659944 tig0019430:-30818 Msa1373350:CDS
ACCTTGTCCTGTGACTCCCG+CGG 0.660411 tig0019430:-31379 Msa1373350:CDS
TCATGATGATGAAGATGAGG+AGG 0.669532 tig0019430:-31241 Msa1373350:CDS
TGATGTGGAGGAACATGTGG+AGG 0.677019 tig0019430:-31193 Msa1373350:CDS
ATGATGACCCAGAATCGTGG+TGG 0.686427 tig0019430:-31780 Msa1373350:CDS
TCGTGGTGGATATAATAACA+AGG 0.692167 tig0019430:-31766 Msa1373350:CDS
AAAGGAAGTGGTATTCCTAG+GGG 0.695257 tig0019430:+31446 None:intergenic
GTCGAGTGAGAGTGATGTGG+AGG 0.696796 tig0019430:-31205 Msa1373350:CDS
GATGTTGGGAGACATGGCCA+AGG 0.712349 tig0019430:-31322 Msa1373350:CDS
CTGATAATGAAAGTGAAGGG+GGG 0.728770 tig0019430:-30903 Msa1373350:CDS
AATAGGTGTAGGAAGCACCG+CGG 0.741680 tig0019430:+31362 None:intergenic
GACATGGCCAAGGAAGAGTG+GGG 0.742081 tig0019430:-31312 Msa1373350:CDS
GGTTGGTGAGAGAGTAACTG+AGG 0.774421 tig0019430:+31852 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GAAGTAATAATAACAATAAC+TGG - tig0019430:30715-30734 Msa1373350:CDS 20.0%
!! TAATAATAACAATAACTGGA+AGG - tig0019430:30719-30738 Msa1373350:CDS 20.0%
!! AATAATAACAATAACTGGAA+GGG - tig0019430:30720-30739 Msa1373350:CDS 20.0%
!!! GAATATTATTTGGAATAGTT+TGG + tig0019430:30797-30816 None:intergenic 20.0%
!! ACTATTCCAAATAATATTCT+TGG - tig0019430:30798-30817 Msa1373350:CDS 20.0%
!! ATAATAATGTCTTAGAGAAT+AGG - tig0019430:31267-31286 Msa1373350:CDS 20.0%
!! TAATAATGTCTTAGAGAATA+GGG - tig0019430:31268-31287 Msa1373350:CDS 20.0%
!! TGAGATTAAAAGCAATAAAT+TGG - tig0019430:31682-31701 Msa1373350:CDS 20.0%
!! GAGATTAAAAGCAATAAATT+GGG - tig0019430:31683-31702 Msa1373350:CDS 20.0%
!! GAAGTAATAATAACAATAAC+TGG - tig0019430:30715-30734 Msa1373350:CDS 20.0%
!! TAATAATAACAATAACTGGA+AGG - tig0019430:30719-30738 Msa1373350:CDS 20.0%
!! AATAATAACAATAACTGGAA+GGG - tig0019430:30720-30739 Msa1373350:CDS 20.0%
!!! GAATATTATTTGGAATAGTT+TGG + tig0019430:30797-30816 None:intergenic 20.0%
!! ACTATTCCAAATAATATTCT+TGG - tig0019430:30798-30817 Msa1373350:CDS 20.0%
!! ATAATAATGTCTTAGAGAAT+AGG - tig0019430:31267-31286 Msa1373350:CDS 20.0%
!! TAATAATGTCTTAGAGAATA+GGG - tig0019430:31268-31287 Msa1373350:CDS 20.0%
!! TGAGATTAAAAGCAATAAAT+TGG - tig0019430:31682-31701 Msa1373350:CDS 20.0%
!! GAGATTAAAAGCAATAAATT+GGG - tig0019430:31683-31702 Msa1373350:CDS 20.0%
! GGAAATTAGGTTTGATATTA+GGG + tig0019430:30677-30696 None:intergenic 25.0%
! AGGAAATTAGGTTTGATATT+AGG + tig0019430:30678-30697 None:intergenic 25.0%
!! TTATTTGGAATAGTTTGGTT+GGG + tig0019430:30792-30811 None:intergenic 25.0%
!! ATTATTTGGAATAGTTTGGT+TGG + tig0019430:30793-30812 None:intergenic 25.0%
! TGGTAACCAAGAATATTATT+TGG + tig0019430:30807-30826 None:intergenic 25.0%
! TAGCATTAAACTTCTTCTTA+GGG + tig0019430:30887-30906 None:intergenic 25.0%
! ATTAAAAGCAATAAATTGGG+AGG - tig0019430:31686-31705 Msa1373350:CDS 25.0%
! GGAAATTAGGTTTGATATTA+GGG + tig0019430:30677-30696 None:intergenic 25.0%
! AGGAAATTAGGTTTGATATT+AGG + tig0019430:30678-30697 None:intergenic 25.0%
!! TTATTTGGAATAGTTTGGTT+GGG + tig0019430:30792-30811 None:intergenic 25.0%
!! ATTATTTGGAATAGTTTGGT+TGG + tig0019430:30793-30812 None:intergenic 25.0%
! TGGTAACCAAGAATATTATT+TGG + tig0019430:30807-30826 None:intergenic 25.0%
! TAGCATTAAACTTCTTCTTA+GGG + tig0019430:30887-30906 None:intergenic 25.0%
! ATTAAAAGCAATAAATTGGG+AGG - tig0019430:31686-31705 Msa1373350:CDS 25.0%
GTGGATATAATAACAAGGTT+TGG - tig0019430:30607-30626 Msa1373350:CDS 30.0%
TAATTTCCTTAATTCCAAGC+CGG - tig0019430:30689-30708 Msa1373350:CDS 30.0%
! TTGTTATTATTACTTCGTCC+CGG + tig0019430:30711-30730 None:intergenic 30.0%
CTAGCATTAAACTTCTTCTT+AGG + tig0019430:30888-30907 None:intergenic 30.0%
TTTCTTAGCACGGATAATAA+AGG + tig0019430:30943-30962 None:intergenic 30.0%
GAGATGATTTACCCTAATTA+TGG - tig0019430:31233-31252 Msa1373350:CDS 30.0%
ATGATTTACCCTAATTATGG+AGG - tig0019430:31236-31255 Msa1373350:CDS 30.0%
AATTGAGAACAATGTTGAGA+TGG - tig0019430:31508-31527 Msa1373350:CDS 30.0%
TAACTTAACAGCAACATCAT+TGG + tig0019430:31576-31595 None:intergenic 30.0%
!! CTTTATGTTTGATGATGTGA+AGG - tig0019430:31712-31731 Msa1373350:CDS 30.0%
! GAAGCAAATGAAAGTATAGA+TGG - tig0019430:31878-31897 Msa1373350:CDS 30.0%
GTGGATATAATAACAAGGTT+TGG - tig0019430:30607-30626 Msa1373350:CDS 30.0%
TAATTTCCTTAATTCCAAGC+CGG - tig0019430:30689-30708 Msa1373350:CDS 30.0%
! TTGTTATTATTACTTCGTCC+CGG + tig0019430:30711-30730 None:intergenic 30.0%
CTAGCATTAAACTTCTTCTT+AGG + tig0019430:30888-30907 None:intergenic 30.0%
TTTCTTAGCACGGATAATAA+AGG + tig0019430:30943-30962 None:intergenic 30.0%
GAGATGATTTACCCTAATTA+TGG - tig0019430:31233-31252 Msa1373350:CDS 30.0%
ATGATTTACCCTAATTATGG+AGG - tig0019430:31236-31255 Msa1373350:CDS 30.0%
AATTGAGAACAATGTTGAGA+TGG - tig0019430:31508-31527 Msa1373350:CDS 30.0%
TAACTTAACAGCAACATCAT+TGG + tig0019430:31576-31595 None:intergenic 30.0%
!! CTTTATGTTTGATGATGTGA+AGG - tig0019430:31712-31731 Msa1373350:CDS 30.0%
! GAAGCAAATGAAAGTATAGA+TGG - tig0019430:31878-31897 Msa1373350:CDS 30.0%
! GATTGGTTGTTAATTACCTG+AGG + tig0019430:30477-30496 None:intergenic 35.0%
ATTATATCCACCACGATTCT+GGG + tig0019430:30598-30617 None:intergenic 35.0%
TATTATATCCACCACGATTC+TGG + tig0019430:30599-30618 None:intergenic 35.0%
!! TCGTGGTGGATATAATAACA+AGG - tig0019430:30602-30621 Msa1373350:CDS 35.0%
AATTTCATGTTAGGATCCAG+AGG + tig0019430:30648-30667 None:intergenic 35.0%
!! GGGTTCTGAAATTTCATGTT+AGG + tig0019430:30657-30676 None:intergenic 35.0%
GGCTTGGAATTAAGGAAATT+AGG + tig0019430:30690-30709 None:intergenic 35.0%
AATTTCCTTAATTCCAAGCC+GGG - tig0019430:30690-30709 Msa1373350:CDS 35.0%
TAAAGGAAGTGGTATTCCTA+GGG + tig0019430:30926-30945 None:intergenic 35.0%
ATAAAGGAAGTGGTATTCCT+AGG + tig0019430:30927-30946 None:intergenic 35.0%
ATTATCCGTGCTAAGAAATC+CGG - tig0019430:30945-30964 Msa1373350:CDS 35.0%
! ACCTATTTTGTCTCCTTCTA+GGG - tig0019430:31022-31041 Msa1373350:CDS 35.0%
! TGTTCATGATGATGAAGATG+AGG - tig0019430:31124-31143 Msa1373350:CDS 35.0%
ATTTACCCTAATTATGGAGG+TGG - tig0019430:31239-31258 Msa1373350:CDS 35.0%
GGATTCTCATATAGCACAAT+TGG - tig0019430:31301-31320 Msa1373350:CDS 35.0%
TTCTCATATAGCACAATTGG+AGG - tig0019430:31304-31323 Msa1373350:CDS 35.0%
AGGAAGAGAATTTGACATTG+AGG - tig0019430:31324-31343 Msa1373350:CDS 35.0%
GGAAGAGAATTTGACATTGA+GGG - tig0019430:31325-31344 Msa1373350:CDS 35.0%
TGTGGTTGAAGATGTTAATG+AGG - tig0019430:31424-31443 Msa1373350:CDS 35.0%
TGAAGATGTTAATGAGGAAG+TGG - tig0019430:31430-31449 Msa1373350:CDS 35.0%
! GGTCTGATAATGAAAGTGAA+GGG - tig0019430:31462-31481 Msa1373350:CDS 35.0%
! GTCTGATAATGAAAGTGAAG+GGG - tig0019430:31463-31482 Msa1373350:CDS 35.0%
! TCTGATAATGAAAGTGAAGG+GGG - tig0019430:31464-31483 Msa1373350:CDS 35.0%
TTGATTCAATGCTGGAAAGT+GGG - tig0019430:31531-31550 Msa1373350:CDS 35.0%
TGGGAGAAATGAAAACATTG+AGG - tig0019430:31550-31569 Msa1373350:CDS 35.0%
GCTGTTAAGTTAGACAATGA+TGG - tig0019430:31584-31603 Msa1373350:CDS 35.0%
!!! AGGTGTCGATGATGTTTTTA+TGG - tig0019430:31622-31641 Msa1373350:CDS 35.0%
AAAAGCAATAAATTGGGAGG+TGG - tig0019430:31689-31708 Msa1373350:CDS 35.0%
CAACAATGTTTGACAGATGA+AGG - tig0019430:31770-31789 Msa1373350:CDS 35.0%
! ATTCACAAGATCGTTTTCCT+TGG + tig0019430:31801-31820 None:intergenic 35.0%
ACTTTCATTTGCTTCTTCGT+CGG + tig0019430:31873-31892 None:intergenic 35.0%
AGTGCAAGAATCAGATAGTT+GGG - tig0019430:31921-31940 Msa1373350:CDS 35.0%
AACGGATAAATCATCATCTC+TGG + tig0019430:31963-31982 None:intergenic 35.0%
! GATTGGTTGTTAATTACCTG+AGG + tig0019430:30477-30496 None:intergenic 35.0%
ATTATATCCACCACGATTCT+GGG + tig0019430:30598-30617 None:intergenic 35.0%
TATTATATCCACCACGATTC+TGG + tig0019430:30599-30618 None:intergenic 35.0%
!! TCGTGGTGGATATAATAACA+AGG - tig0019430:30602-30621 Msa1373350:CDS 35.0%
AATTTCATGTTAGGATCCAG+AGG + tig0019430:30648-30667 None:intergenic 35.0%
!! GGGTTCTGAAATTTCATGTT+AGG + tig0019430:30657-30676 None:intergenic 35.0%
GGCTTGGAATTAAGGAAATT+AGG + tig0019430:30690-30709 None:intergenic 35.0%
AATTTCCTTAATTCCAAGCC+GGG - tig0019430:30690-30709 Msa1373350:CDS 35.0%
TAAAGGAAGTGGTATTCCTA+GGG + tig0019430:30926-30945 None:intergenic 35.0%
ATAAAGGAAGTGGTATTCCT+AGG + tig0019430:30927-30946 None:intergenic 35.0%
ATTATCCGTGCTAAGAAATC+CGG - tig0019430:30945-30964 Msa1373350:CDS 35.0%
! ACCTATTTTGTCTCCTTCTA+GGG - tig0019430:31022-31041 Msa1373350:CDS 35.0%
! TGTTCATGATGATGAAGATG+AGG - tig0019430:31124-31143 Msa1373350:CDS 35.0%
ATTTACCCTAATTATGGAGG+TGG - tig0019430:31239-31258 Msa1373350:CDS 35.0%
GGATTCTCATATAGCACAAT+TGG - tig0019430:31301-31320 Msa1373350:CDS 35.0%
TTCTCATATAGCACAATTGG+AGG - tig0019430:31304-31323 Msa1373350:CDS 35.0%
AGGAAGAGAATTTGACATTG+AGG - tig0019430:31324-31343 Msa1373350:CDS 35.0%
GGAAGAGAATTTGACATTGA+GGG - tig0019430:31325-31344 Msa1373350:CDS 35.0%
TGTGGTTGAAGATGTTAATG+AGG - tig0019430:31424-31443 Msa1373350:CDS 35.0%
TGAAGATGTTAATGAGGAAG+TGG - tig0019430:31430-31449 Msa1373350:CDS 35.0%
! GGTCTGATAATGAAAGTGAA+GGG - tig0019430:31462-31481 Msa1373350:CDS 35.0%
! GTCTGATAATGAAAGTGAAG+GGG - tig0019430:31463-31482 Msa1373350:CDS 35.0%
! TCTGATAATGAAAGTGAAGG+GGG - tig0019430:31464-31483 Msa1373350:CDS 35.0%
TTGATTCAATGCTGGAAAGT+GGG - tig0019430:31531-31550 Msa1373350:CDS 35.0%
TGGGAGAAATGAAAACATTG+AGG - tig0019430:31550-31569 Msa1373350:CDS 35.0%
GCTGTTAAGTTAGACAATGA+TGG - tig0019430:31584-31603 Msa1373350:CDS 35.0%
!!! AGGTGTCGATGATGTTTTTA+TGG - tig0019430:31622-31641 Msa1373350:CDS 35.0%
AAAAGCAATAAATTGGGAGG+TGG - tig0019430:31689-31708 Msa1373350:CDS 35.0%
CAACAATGTTTGACAGATGA+AGG - tig0019430:31770-31789 Msa1373350:CDS 35.0%
! ATTCACAAGATCGTTTTCCT+TGG + tig0019430:31801-31820 None:intergenic 35.0%
ACTTTCATTTGCTTCTTCGT+CGG + tig0019430:31873-31892 None:intergenic 35.0%
AGTGCAAGAATCAGATAGTT+GGG - tig0019430:31921-31940 Msa1373350:CDS 35.0%
AACGGATAAATCATCATCTC+TGG + tig0019430:31963-31982 None:intergenic 35.0%
TCATCTGAGGATTCATCATC+TGG + tig0019430:30437-30456 None:intergenic 40.0%
TTGTTAATTACCTGAGGAGG+CGG + tig0019430:30471-30490 None:intergenic 40.0%
TGGTTGTTAATTACCTGAGG+AGG + tig0019430:30474-30493 None:intergenic 40.0%
TGAGTCATCATCTTCATCTG+CGG + tig0019430:30540-30559 None:intergenic 40.0%
CAATAACTGGAAGGGAAAGA+AGG - tig0019430:30728-30747 Msa1373350:CDS 40.0%
GCGCAAAGATATTAGGAGAA+TGG - tig0019430:30761-30780 Msa1373350:CDS 40.0%
GATTGTAACTCGTGAAGAGT+AGG + tig0019430:30834-30853 None:intergenic 40.0%
AAAGGAAGTGGTATTCCTAG+GGG + tig0019430:30925-30944 None:intergenic 40.0%
AGCACGGATAATAAAGGAAG+TGG + tig0019430:30937-30956 None:intergenic 40.0%
GAAGGAGACAAAATAGGTGT+AGG + tig0019430:31020-31039 None:intergenic 40.0%
! CACCTATTTTGTCTCCTTCT+AGG - tig0019430:31021-31040 Msa1373350:CDS 40.0%
TCCCTAGAAGGAGACAAAAT+AGG + tig0019430:31026-31045 None:intergenic 40.0%
! TCATGATGATGAAGATGAGG+AGG - tig0019430:31127-31146 Msa1373350:CDS 40.0%
TCTCAAACCTGCTCAAATCT+TGG + tig0019430:31217-31236 None:intergenic 40.0%
AGTCACCACCTCCATAATTA+GGG + tig0019430:31247-31266 None:intergenic 40.0%
TAGTCACCACCTCCATAATT+AGG + tig0019430:31248-31267 None:intergenic 40.0%
AGAGAATAGGGTAGATGATC+AGG - tig0019430:31280-31299 Msa1373350:CDS 40.0%
! AGCGTCTTTTCTTAATGGAG+AGG - tig0019430:31348-31367 Msa1373350:CDS 40.0%
! GCGTCTTTTCTTAATGGAGA+GGG - tig0019430:31349-31368 Msa1373350:CDS 40.0%
TTCTTAATGGAGAGGGAGTT+AGG - tig0019430:31356-31375 Msa1373350:CDS 40.0%
TCTTAATGGAGAGGGAGTTA+GGG - tig0019430:31357-31376 Msa1373350:CDS 40.0%
AGATGTTAATGAGGAAGTGG+TGG - tig0019430:31433-31452 Msa1373350:CDS 40.0%
! GGGTCTGATAATGAAAGTGA+AGG - tig0019430:31461-31480 Msa1373350:CDS 40.0%
! CTGATAATGAAAGTGAAGGG+GGG - tig0019430:31465-31484 Msa1373350:CDS 40.0%
TTGTTCTCAATTCCCATGAC+AGG + tig0019430:31500-31519 None:intergenic 40.0%
! TGAGATGGTTGATTCAATGC+TGG - tig0019430:31523-31542 Msa1373350:CDS 40.0%
! GTTGATTCAATGCTGGAAAG+TGG - tig0019430:31530-31549 Msa1373350:CDS 40.0%
! TGATGATGTGAAGGAAGAGA+AGG - tig0019430:31721-31740 Msa1373350:CDS 40.0%
CTTGTGAATCGAAAAGAGAG+TGG - tig0019430:31812-31831 Msa1373350:CDS 40.0%
GAGTGCAAGAATCAGATAGT+TGG - tig0019430:31920-31939 Msa1373350:CDS 40.0%
TCATCTGAGGATTCATCATC+TGG + tig0019430:30437-30456 None:intergenic 40.0%
TTGTTAATTACCTGAGGAGG+CGG + tig0019430:30471-30490 None:intergenic 40.0%
TGGTTGTTAATTACCTGAGG+AGG + tig0019430:30474-30493 None:intergenic 40.0%
TGAGTCATCATCTTCATCTG+CGG + tig0019430:30540-30559 None:intergenic 40.0%
CAATAACTGGAAGGGAAAGA+AGG - tig0019430:30728-30747 Msa1373350:CDS 40.0%
GCGCAAAGATATTAGGAGAA+TGG - tig0019430:30761-30780 Msa1373350:CDS 40.0%
GATTGTAACTCGTGAAGAGT+AGG + tig0019430:30834-30853 None:intergenic 40.0%
AAAGGAAGTGGTATTCCTAG+GGG + tig0019430:30925-30944 None:intergenic 40.0%
AGCACGGATAATAAAGGAAG+TGG + tig0019430:30937-30956 None:intergenic 40.0%
GAAGGAGACAAAATAGGTGT+AGG + tig0019430:31020-31039 None:intergenic 40.0%
! CACCTATTTTGTCTCCTTCT+AGG - tig0019430:31021-31040 Msa1373350:CDS 40.0%
TCCCTAGAAGGAGACAAAAT+AGG + tig0019430:31026-31045 None:intergenic 40.0%
! TCATGATGATGAAGATGAGG+AGG - tig0019430:31127-31146 Msa1373350:CDS 40.0%
TCTCAAACCTGCTCAAATCT+TGG + tig0019430:31217-31236 None:intergenic 40.0%
AGTCACCACCTCCATAATTA+GGG + tig0019430:31247-31266 None:intergenic 40.0%
TAGTCACCACCTCCATAATT+AGG + tig0019430:31248-31267 None:intergenic 40.0%
AGAGAATAGGGTAGATGATC+AGG - tig0019430:31280-31299 Msa1373350:CDS 40.0%
! AGCGTCTTTTCTTAATGGAG+AGG - tig0019430:31348-31367 Msa1373350:CDS 40.0%
! GCGTCTTTTCTTAATGGAGA+GGG - tig0019430:31349-31368 Msa1373350:CDS 40.0%
TTCTTAATGGAGAGGGAGTT+AGG - tig0019430:31356-31375 Msa1373350:CDS 40.0%
TCTTAATGGAGAGGGAGTTA+GGG - tig0019430:31357-31376 Msa1373350:CDS 40.0%
AGATGTTAATGAGGAAGTGG+TGG - tig0019430:31433-31452 Msa1373350:CDS 40.0%
! GGGTCTGATAATGAAAGTGA+AGG - tig0019430:31461-31480 Msa1373350:CDS 40.0%
! CTGATAATGAAAGTGAAGGG+GGG - tig0019430:31465-31484 Msa1373350:CDS 40.0%
TTGTTCTCAATTCCCATGAC+AGG + tig0019430:31500-31519 None:intergenic 40.0%
! TGAGATGGTTGATTCAATGC+TGG - tig0019430:31523-31542 Msa1373350:CDS 40.0%
! GTTGATTCAATGCTGGAAAG+TGG - tig0019430:31530-31549 Msa1373350:CDS 40.0%
! TGATGATGTGAAGGAAGAGA+AGG - tig0019430:31721-31740 Msa1373350:CDS 40.0%
CTTGTGAATCGAAAAGAGAG+TGG - tig0019430:31812-31831 Msa1373350:CDS 40.0%
GAGTGCAAGAATCAGATAGT+TGG - tig0019430:31920-31939 Msa1373350:CDS 40.0%
! GTTGTTGTTGCTGCTGAGAT+TGG + tig0019430:30494-30513 None:intergenic 45.0%
TCATCATCTTCATCTGCGGT+TGG + tig0019430:30536-30555 None:intergenic 45.0%
ATTATTACTTCGTCCCGGCT+TGG + tig0019430:30706-30725 None:intergenic 45.0%
GCGACAAGCGCAAAGATATT+AGG - tig0019430:30754-30773 Msa1373350:CDS 45.0%
TGTAACTCGTGAAGAGTAGG+TGG + tig0019430:30831-30850 None:intergenic 45.0%
TACCACCGGATTTCTTAGCA+CGG + tig0019430:30953-30972 None:intergenic 45.0%
! TCTCCTTCTAGGGAGATGTT+GGG - tig0019430:31032-31051 Msa1373350:CDS 45.0%
GGTCCATGAAGGGTTTGATT+AGG - tig0019430:31093-31112 Msa1373350:CDS 45.0%
CAGCCTAATCAAACCCTTCA+TGG + tig0019430:31099-31118 None:intergenic 45.0%
GATGATGAAGATGAGGAGGA+TGG - tig0019430:31131-31150 Msa1373350:CDS 45.0%
!!! GAGGGAGCGTCTTTTCTTAA+TGG - tig0019430:31343-31362 Msa1373350:CDS 45.0%
CTTAATGGAGAGGGAGTTAG+GGG - tig0019430:31358-31377 Msa1373350:CDS 45.0%
GTTTCTTGAGAGGCAAAACC+AGG - tig0019430:31400-31419 Msa1373350:CDS 45.0%
TAACATCTTCAACCACAGCC+TGG + tig0019430:31421-31440 None:intergenic 45.0%
! AATGAGGAAGTGGTGGAGAA+TGG - tig0019430:31440-31459 Msa1373350:CDS 45.0%
! ATGAGGAAGTGGTGGAGAAT+GGG - tig0019430:31441-31460 Msa1373350:CDS 45.0%
! GATGGAGTATCAGAAGCTGA+AGG - tig0019430:31602-31621 Msa1373350:CDS 45.0%
! TGATTTGAAACCACCTCGCT+TGG + tig0019430:31659-31678 None:intergenic 45.0%
AAGCGAGGTGGTTTCAAATC+AGG - tig0019430:31658-31677 Msa1373350:CDS 45.0%
! GACAGATGAAGGTTTTGCCA+AGG - tig0019430:31781-31800 Msa1373350:CDS 45.0%
AGATGGCTTAGTGAGTGAGA+CGG - tig0019430:31895-31914 Msa1373350:CDS 45.0%
! GTTGTTGTTGCTGCTGAGAT+TGG + tig0019430:30494-30513 None:intergenic 45.0%
TCATCATCTTCATCTGCGGT+TGG + tig0019430:30536-30555 None:intergenic 45.0%
ATTATTACTTCGTCCCGGCT+TGG + tig0019430:30706-30725 None:intergenic 45.0%
GCGACAAGCGCAAAGATATT+AGG - tig0019430:30754-30773 Msa1373350:CDS 45.0%
TGTAACTCGTGAAGAGTAGG+TGG + tig0019430:30831-30850 None:intergenic 45.0%
TACCACCGGATTTCTTAGCA+CGG + tig0019430:30953-30972 None:intergenic 45.0%
! TCTCCTTCTAGGGAGATGTT+GGG - tig0019430:31032-31051 Msa1373350:CDS 45.0%
GGTCCATGAAGGGTTTGATT+AGG - tig0019430:31093-31112 Msa1373350:CDS 45.0%
CAGCCTAATCAAACCCTTCA+TGG + tig0019430:31099-31118 None:intergenic 45.0%
GATGATGAAGATGAGGAGGA+TGG - tig0019430:31131-31150 Msa1373350:CDS 45.0%
!!! GAGGGAGCGTCTTTTCTTAA+TGG - tig0019430:31343-31362 Msa1373350:CDS 45.0%
CTTAATGGAGAGGGAGTTAG+GGG - tig0019430:31358-31377 Msa1373350:CDS 45.0%
GTTTCTTGAGAGGCAAAACC+AGG - tig0019430:31400-31419 Msa1373350:CDS 45.0%
TAACATCTTCAACCACAGCC+TGG + tig0019430:31421-31440 None:intergenic 45.0%
! AATGAGGAAGTGGTGGAGAA+TGG - tig0019430:31440-31459 Msa1373350:CDS 45.0%
! ATGAGGAAGTGGTGGAGAAT+GGG - tig0019430:31441-31460 Msa1373350:CDS 45.0%
! GATGGAGTATCAGAAGCTGA+AGG - tig0019430:31602-31621 Msa1373350:CDS 45.0%
! TGATTTGAAACCACCTCGCT+TGG + tig0019430:31659-31678 None:intergenic 45.0%
AAGCGAGGTGGTTTCAAATC+AGG - tig0019430:31658-31677 Msa1373350:CDS 45.0%
! GACAGATGAAGGTTTTGCCA+AGG - tig0019430:31781-31800 Msa1373350:CDS 45.0%
AGATGGCTTAGTGAGTGAGA+CGG - tig0019430:31895-31914 Msa1373350:CDS 45.0%
GGAGGAGGATTCATCATCTG+AGG + tig0019430:30450-30469 None:intergenic 50.0%
TTAATTACCTGAGGAGGCGG+AGG + tig0019430:30468-30487 None:intergenic 50.0%
!! GGTTGGTGAGAGAGTAACTG+AGG + tig0019430:30519-30538 None:intergenic 50.0%
CCACGATTCTGGGTCATCAT+CGG + tig0019430:30588-30607 None:intergenic 50.0%
ATGATGACCCAGAATCGTGG+TGG - tig0019430:30588-30607 Msa1373350:CDS 50.0%
!! TTCGTCCCGGCTTGGAATTA+AGG + tig0019430:30698-30717 None:intergenic 50.0%
ACTCGTGAAGAGTAGGTGGT+TGG + tig0019430:30827-30846 None:intergenic 50.0%
! GATTTGCTCCTTATGCCCCT+AGG - tig0019430:30907-30926 Msa1373350:CDS 50.0%
! GTGGTATTCCTAGGGGCATA+AGG + tig0019430:30918-30937 None:intergenic 50.0%
ATCCGTGCTAAGAAATCCGG+TGG - tig0019430:30948-30967 Msa1373350:CDS 50.0%
!! AATAGGTGTAGGAAGCACCG+CGG + tig0019430:31009-31028 None:intergenic 50.0%
! GTCTCCTTCTAGGGAGATGT+TGG - tig0019430:31031-31050 Msa1373350:CDS 50.0%
TCTCCCAACATCTCCCTAGA+AGG + tig0019430:31038-31057 None:intergenic 50.0%
TAGGGAGATGTTGGGAGACA+TGG - tig0019430:31040-31059 Msa1373350:CDS 50.0%
AGACATGGCCAAGGAAGAGT+GGG - tig0019430:31055-31074 Msa1373350:CDS 50.0%
GATGGTTACGGGTCCATGAA+GGG - tig0019430:31083-31102 Msa1373350:CDS 50.0%
GATGAAGATGAGGAGGATGG+TGG - tig0019430:31134-31153 Msa1373350:CDS 50.0%
! ATGAGGAGGATGGTGGTAGT+GGG - tig0019430:31141-31160 Msa1373350:CDS 50.0%
GAGTGATGTGGAGGAACATG+TGG - tig0019430:31172-31191 Msa1373350:CDS 50.0%
TGATGTGGAGGAACATGTGG+AGG - tig0019430:31175-31194 Msa1373350:CDS 50.0%
GGCTTGACCAAGATTTGAGC+AGG - tig0019430:31207-31226 Msa1373350:CDS 50.0%
!! GGAGGATGCTGTTTCTTGAG+AGG - tig0019430:31390-31409 Msa1373350:CDS 50.0%
GGGTCTGATGTTCCTGTCAT+GGG - tig0019430:31485-31504 Msa1373350:CDS 50.0%
GGAGGAGGATTCATCATCTG+AGG + tig0019430:30450-30469 None:intergenic 50.0%
TTAATTACCTGAGGAGGCGG+AGG + tig0019430:30468-30487 None:intergenic 50.0%
!! GGTTGGTGAGAGAGTAACTG+AGG + tig0019430:30519-30538 None:intergenic 50.0%
CCACGATTCTGGGTCATCAT+CGG + tig0019430:30588-30607 None:intergenic 50.0%
ATGATGACCCAGAATCGTGG+TGG - tig0019430:30588-30607 Msa1373350:CDS 50.0%
!! TTCGTCCCGGCTTGGAATTA+AGG + tig0019430:30698-30717 None:intergenic 50.0%
ACTCGTGAAGAGTAGGTGGT+TGG + tig0019430:30827-30846 None:intergenic 50.0%
! GATTTGCTCCTTATGCCCCT+AGG - tig0019430:30907-30926 Msa1373350:CDS 50.0%
! GTGGTATTCCTAGGGGCATA+AGG + tig0019430:30918-30937 None:intergenic 50.0%
ATCCGTGCTAAGAAATCCGG+TGG - tig0019430:30948-30967 Msa1373350:CDS 50.0%
!! AATAGGTGTAGGAAGCACCG+CGG + tig0019430:31009-31028 None:intergenic 50.0%
! GTCTCCTTCTAGGGAGATGT+TGG - tig0019430:31031-31050 Msa1373350:CDS 50.0%
TCTCCCAACATCTCCCTAGA+AGG + tig0019430:31038-31057 None:intergenic 50.0%
TAGGGAGATGTTGGGAGACA+TGG - tig0019430:31040-31059 Msa1373350:CDS 50.0%
AGACATGGCCAAGGAAGAGT+GGG - tig0019430:31055-31074 Msa1373350:CDS 50.0%
GATGGTTACGGGTCCATGAA+GGG - tig0019430:31083-31102 Msa1373350:CDS 50.0%
GATGAAGATGAGGAGGATGG+TGG - tig0019430:31134-31153 Msa1373350:CDS 50.0%
! ATGAGGAGGATGGTGGTAGT+GGG - tig0019430:31141-31160 Msa1373350:CDS 50.0%
GAGTGATGTGGAGGAACATG+TGG - tig0019430:31172-31191 Msa1373350:CDS 50.0%
TGATGTGGAGGAACATGTGG+AGG - tig0019430:31175-31194 Msa1373350:CDS 50.0%
GGCTTGACCAAGATTTGAGC+AGG - tig0019430:31207-31226 Msa1373350:CDS 50.0%
!! GGAGGATGCTGTTTCTTGAG+AGG - tig0019430:31390-31409 Msa1373350:CDS 50.0%
GGGTCTGATGTTCCTGTCAT+GGG - tig0019430:31485-31504 Msa1373350:CDS 50.0%
TTCTGGGTCATCATCGGAGG+AGG + tig0019430:30582-30601 None:intergenic 55.0%
CGATTCTGGGTCATCATCGG+AGG + tig0019430:30585-30604 None:intergenic 55.0%
CCGATGATGACCCAGAATCG+TGG - tig0019430:30585-30604 Msa1373350:CDS 55.0%
GTCTCAACAGCAGCTTCCTC+TGG - tig0019430:30629-30648 Msa1373350:CDS 55.0%
CACGAGCGATGCAATACCAC+CGG + tig0019430:30967-30986 None:intergenic 55.0%
!! ATAGGTGTAGGAAGCACCGC+GGG + tig0019430:31008-31027 None:intergenic 55.0%
GATGTTGGGAGACATGGCCA+AGG - tig0019430:31046-31065 Msa1373350:CDS 55.0%
GAGACATGGCCAAGGAAGAG+TGG - tig0019430:31054-31073 Msa1373350:CDS 55.0%
GACATGGCCAAGGAAGAGTG+GGG - tig0019430:31056-31075 Msa1373350:CDS 55.0%
ATCCACACCCCACTCTTCCT+TGG + tig0019430:31066-31085 None:intergenic 55.0%
AAGGAAGAGTGGGGTGTGGA+TGG - tig0019430:31065-31084 Msa1373350:CDS 55.0%
GAGTGGGGTGTGGATGGTTA+CGG - tig0019430:31071-31090 Msa1373350:CDS 55.0%
AGTGGGGTGTGGATGGTTAC+GGG - tig0019430:31072-31091 Msa1373350:CDS 55.0%
GGATGGTTACGGGTCCATGA+AGG - tig0019430:31082-31101 Msa1373350:CDS 55.0%
! GATGAGGAGGATGGTGGTAG+TGG - tig0019430:31140-31159 Msa1373350:CDS 55.0%
TGGGTCGAGTGAGAGTGATG+TGG - tig0019430:31160-31179 Msa1373350:CDS 55.0%
GTCGAGTGAGAGTGATGTGG+AGG - tig0019430:31163-31182 Msa1373350:CDS 55.0%
TGTGGAGGAACATGTGGAGG+TGG - tig0019430:31178-31197 Msa1373350:CDS 55.0%
AGGAACATGTGGAGGTGGAG+AGG - tig0019430:31183-31202 Msa1373350:CDS 55.0%
AACATGTGGAGGTGGAGAGG+AGG - tig0019430:31186-31205 Msa1373350:CDS 55.0%
AGTTAGGGGATCTGCGAAGG+AGG - tig0019430:31372-31391 Msa1373350:CDS 55.0%
TGAGAGGCAAAACCAGGCTG+TGG - tig0019430:31406-31425 Msa1373350:CDS 55.0%
GGGGTCTGATGTTCCTGTCA+TGG - tig0019430:31484-31503 Msa1373350:CDS 55.0%
GGAAGAGTCTGTTCCAAGCG+AGG - tig0019430:31643-31662 Msa1373350:CDS 55.0%
AGAGTCTGTTCCAAGCGAGG+TGG - tig0019430:31646-31665 Msa1373350:CDS 55.0%
TTCTGGGTCATCATCGGAGG+AGG + tig0019430:30582-30601 None:intergenic 55.0%
CGATTCTGGGTCATCATCGG+AGG + tig0019430:30585-30604 None:intergenic 55.0%
CCGATGATGACCCAGAATCG+TGG - tig0019430:30585-30604 Msa1373350:CDS 55.0%
GTCTCAACAGCAGCTTCCTC+TGG - tig0019430:30629-30648 Msa1373350:CDS 55.0%
CACGAGCGATGCAATACCAC+CGG + tig0019430:30967-30986 None:intergenic 55.0%
!! ATAGGTGTAGGAAGCACCGC+GGG + tig0019430:31008-31027 None:intergenic 55.0%
GATGTTGGGAGACATGGCCA+AGG - tig0019430:31046-31065 Msa1373350:CDS 55.0%
GAGACATGGCCAAGGAAGAG+TGG - tig0019430:31054-31073 Msa1373350:CDS 55.0%
GACATGGCCAAGGAAGAGTG+GGG - tig0019430:31056-31075 Msa1373350:CDS 55.0%
ATCCACACCCCACTCTTCCT+TGG + tig0019430:31066-31085 None:intergenic 55.0%
AAGGAAGAGTGGGGTGTGGA+TGG - tig0019430:31065-31084 Msa1373350:CDS 55.0%
GAGTGGGGTGTGGATGGTTA+CGG - tig0019430:31071-31090 Msa1373350:CDS 55.0%
AGTGGGGTGTGGATGGTTAC+GGG - tig0019430:31072-31091 Msa1373350:CDS 55.0%
GGATGGTTACGGGTCCATGA+AGG - tig0019430:31082-31101 Msa1373350:CDS 55.0%
! GATGAGGAGGATGGTGGTAG+TGG - tig0019430:31140-31159 Msa1373350:CDS 55.0%
TGGGTCGAGTGAGAGTGATG+TGG - tig0019430:31160-31179 Msa1373350:CDS 55.0%
GTCGAGTGAGAGTGATGTGG+AGG - tig0019430:31163-31182 Msa1373350:CDS 55.0%
TGTGGAGGAACATGTGGAGG+TGG - tig0019430:31178-31197 Msa1373350:CDS 55.0%
AGGAACATGTGGAGGTGGAG+AGG - tig0019430:31183-31202 Msa1373350:CDS 55.0%
AACATGTGGAGGTGGAGAGG+AGG - tig0019430:31186-31205 Msa1373350:CDS 55.0%
AGTTAGGGGATCTGCGAAGG+AGG - tig0019430:31372-31391 Msa1373350:CDS 55.0%
TGAGAGGCAAAACCAGGCTG+TGG - tig0019430:31406-31425 Msa1373350:CDS 55.0%
GGGGTCTGATGTTCCTGTCA+TGG - tig0019430:31484-31503 Msa1373350:CDS 55.0%
GGAAGAGTCTGTTCCAAGCG+AGG - tig0019430:31643-31662 Msa1373350:CDS 55.0%
AGAGTCTGTTCCAAGCGAGG+TGG - tig0019430:31646-31665 Msa1373350:CDS 55.0%
ATTACCTGAGGAGGCGGAGG+AGG + tig0019430:30465-30484 None:intergenic 60.0%
TGGGTCATCATCGGAGGAGG+AGG + tig0019430:30579-30598 None:intergenic 60.0%
ACCTTGTCCTGTGACTCCCG+CGG - tig0019430:30989-31008 Msa1373350:CDS 60.0%
GGGAGTTAGGGGATCTGCGA+AGG - tig0019430:31369-31388 Msa1373350:CDS 60.0%
ATTACCTGAGGAGGCGGAGG+AGG + tig0019430:30465-30484 None:intergenic 60.0%
TGGGTCATCATCGGAGGAGG+AGG + tig0019430:30579-30598 None:intergenic 60.0%
ACCTTGTCCTGTGACTCCCG+CGG - tig0019430:30989-31008 Msa1373350:CDS 60.0%
GGGAGTTAGGGGATCTGCGA+AGG - tig0019430:31369-31388 Msa1373350:CDS 60.0%
GAATCCTCCTCCGCCTCCTC+AGG - tig0019430:30458-30477 Msa1373350:CDS 65.0%
ACCGCGGGAGTCACAGGACA+AGG + tig0019430:30993-31012 None:intergenic 65.0%
GGCCAAGGAAGAGTGGGGTG+TGG - tig0019430:31061-31080 Msa1373350:CDS 65.0%
GAATCCTCCTCCGCCTCCTC+AGG - tig0019430:30458-30477 Msa1373350:CDS 65.0%
ACCGCGGGAGTCACAGGACA+AGG + tig0019430:30993-31012 None:intergenic 65.0%
GGCCAAGGAAGAGTGGGGTG+TGG - tig0019430:31061-31080 Msa1373350:CDS 65.0%
!! GGAAGCACCGCGGGAGTCAC+AGG + tig0019430:30999-31018 None:intergenic 70.0%
!! GGAAGCACCGCGGGAGTCAC+AGG + tig0019430:30999-31018 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
tig0019430 gene 30399 31991 30399 ID=Msa1373350;Name=Msa1373350
tig0019430 mRNA 30399 31991 30399 ID=Msa1373350-mRNA-1;Parent=Msa1373350;Name=Msa1373350-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|530
tig0019430 exon 30399 31991 30399 ID=Msa1373350-mRNA-1:exon:3309;Parent=Msa1373350-mRNA-1
tig0019430 CDS 30399 31991 30399 ID=Msa1373350-mRNA-1:cds;Parent=Msa1373350-mRNA-1
Gene Sequence

>Msa1373350

ATGAACGATCAATCTCAGATGATGATGAATTTGAACCAGATGATGAATCCTCAGATGATGAATCCTCCTCCGCCTCCTCAGGTAATTAACAACCAATCTCAGCAGCAACAACAACAACCTCAGTTACTCTCTCACCAACCGCAGATGAAGATGATGACTCAGAATCAACAACAGCTTCCTCCTCCTCCGATGATGACCCAGAATCGTGGTGGATATAATAACAAGGTTTGGTCTCAACAGCAGCTTCCTCTGGATCCTAACATGAAATTTCAGAACCCTAATATCAAACCTAATTTCCTTAATTCCAAGCCGGGACGAAGTAATAATAACAATAACTGGAAGGGAAAGAAGGTTAGCGACAAGCGCAAAGATATTAGGAGAATGGAAAAACCCAACCAAACTATTCCAAATAATATTCTTGGTTACCAACCACCTACTCTTCACGAGTTACAATCTCAGAATCGTTTGAAAGCGCGTAAGTTTTACCCTAAGAAGAAGTTTAATGCTAGATTTGCTCCTTATGCCCCTAGGAATACCACTTCCTTTATTATCCGTGCTAAGAAATCCGGTGGTATTGCATCGCTCGTGTCACCTTGTCCTGTGACTCCCGCGGTGCTTCCTACACCTATTTTGTCTCCTTCTAGGGAGATGTTGGGAGACATGGCCAAGGAAGAGTGGGGTGTGGATGGTTACGGGTCCATGAAGGGTTTGATTAGGCTGAGAGATGTTCATGATGATGAAGATGAGGAGGATGGTGGTAGTGGGTCGAGTGAGAGTGATGTGGAGGAACATGTGGAGGTGGAGAGGAGGCTTGACCAAGATTTGAGCAGGTTTGAGATGATTTACCCTAATTATGGAGGTGGTGACTATAATAATGTCTTAGAGAATAGGGTAGATGATCAGGATTCTCATATAGCACAATTGGAGGAAGAGAATTTGACATTGAGGGAGCGTCTTTTCTTAATGGAGAGGGAGTTAGGGGATCTGCGAAGGAGGATGCTGTTTCTTGAGAGGCAAAACCAGGCTGTGGTTGAAGATGTTAATGAGGAAGTGGTGGAGAATGGGTCTGATAATGAAAGTGAAGGGGGGTCTGATGTTCCTGTCATGGGAATTGAGAACAATGTTGAGATGGTTGATTCAATGCTGGAAAGTGGGAGAAATGAAAACATTGAGGCCAATGATGTTGCTGTTAAGTTAGACAATGATGGAGTATCAGAAGCTGAAGGTGTCGATGATGTTTTTATGGAAGAGTCTGTTCCAAGCGAGGTGGTTTCAAATCAGGATGAGATTAAAAGCAATAAATTGGGAGGTGGCTTTATGTTTGATGATGTGAAGGAAGAGAAGGATAAGCAGAAGAACGAATTAGCTACACAACAATGTTTGACAGATGAAGGTTTTGCCAAGGAAAACGATCTTGTGAATCGAAAAGAGAGTGGCGATGAAATGATCGATAGAAATGACGAATTGAAAACCGACGAAGAAGCAAATGAAAGTATAGATGGCTTAGTGAGTGAGACGGATGAGTGCAAGAATCAGATAGTTGGGAAAAATTCAGAGACTGCCAGAGATGATGATTTATCCGTTGCTCAGTAG

Protein sequence

>Msa1373350

MNDQSQMMMNLNQMMNPQMMNPPPPPQVINNQSQQQQQQPQLLSHQPQMKMMTQNQQQLPPPPMMTQNRGGYNNKVWSQQQLPLDPNMKFQNPNIKPNFLNSKPGRSNNNNNWKGKKVSDKRKDIRRMEKPNQTIPNNILGYQPPTLHELQSQNRLKARKFYPKKKFNARFAPYAPRNTTSFIIRAKKSGGIASLVSPCPVTPAVLPTPILSPSREMLGDMAKEEWGVDGYGSMKGLIRLRDVHDDEDEEDGGSGSSESDVEEHVEVERRLDQDLSRFEMIYPNYGGGDYNNVLENRVDDQDSHIAQLEEENLTLRERLFLMERELGDLRRRMLFLERQNQAVVEDVNEEVVENGSDNESEGGSDVPVMGIENNVEMVDSMLESGRNENIEANDVAVKLDNDGVSEAEGVDDVFMEESVPSEVVSNQDEIKSNKLGGGFMFDDVKEEKDKQKNELATQQCLTDEGFAKENDLVNRKESGDEMIDRNDELKTDEEANESIDGLVSETDECKNQIVGKNSETARDDDLSVAQ*