Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0852620 | XP_013454118.1 | 99.162 | 358 | 3 | 0 | 1 | 358 | 1 | 358 | 0.0 | 724 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0852620 | sp|O65735|ALF_CICAR | 94.444 | 360 | 17 | 2 | 1 | 358 | 1 | 359 | 0.0 | 686 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0852620 | I3SU63 | 99.162 | 358 | 3 | 0 | 1 | 358 | 1 | 358 | 0.0 | 724 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0009560 | Msa0852620 | -0.815709 | 8.044107e-52 | -8.615850e-47 |
| Msa0016440 | Msa0852620 | 0.846316 | 2.344814e-59 | -8.615850e-47 |
| Msa0036560 | Msa0852620 | -0.806950 | 6.411462e-50 | -8.615850e-47 |
| Msa0045620 | Msa0852620 | 0.826870 | 2.139230e-54 | -8.615850e-47 |
| Msa0089540 | Msa0852620 | 0.815461 | 9.138176e-52 | -8.615850e-47 |
| Msa0623310 | Msa0852620 | 0.811455 | 6.942722e-51 | -8.615850e-47 |
| Msa0624930 | Msa0852620 | 0.816346 | 5.798485e-52 | -8.615850e-47 |
| Msa0626980 | Msa0852620 | 0.804471 | 2.126318e-49 | -8.615850e-47 |
| Msa0627360 | Msa0852620 | 0.809947 | 1.470479e-50 | -8.615850e-47 |
| Msa0630010 | Msa0852620 | -0.806924 | 6.495808e-50 | -8.615850e-47 |
| Msa0658120 | Msa0852620 | 0.811222 | 7.797050e-51 | -8.615850e-47 |
| Msa0673940 | Msa0852620 | 0.823384 | 1.425562e-53 | -8.615850e-47 |
| Msa0709380 | Msa0852620 | 0.806764 | 7.021662e-50 | -8.615850e-47 |
| Msa0741660 | Msa0852620 | 0.815723 | 7.989541e-52 | -8.615850e-47 |
| Msa0812330 | Msa0852620 | 0.863751 | 1.990924e-64 | -8.615850e-47 |
| Msa0822740 | Msa0852620 | 0.814399 | 1.571621e-51 | -8.615850e-47 |
| Msa0138350 | Msa0852620 | 0.802599 | 5.197290e-49 | -8.615850e-47 |
| Msa0139280 | Msa0852620 | -0.825900 | 3.641975e-54 | -8.615850e-47 |
| Msa0176610 | Msa0852620 | -0.806615 | 7.546509e-50 | -8.615850e-47 |
| Msa0185690 | Msa0852620 | 0.805911 | 1.062093e-49 | -8.615850e-47 |
| Msa0188740 | Msa0852620 | 0.803745 | 3.010377e-49 | -8.615850e-47 |
| Msa0195030 | Msa0852620 | 0.800264 | 1.563717e-48 | -8.615850e-47 |
| Msa0237180 | Msa0852620 | 0.813462 | 2.528882e-51 | -8.615850e-47 |
| Msa0372100 | Msa0852620 | 0.802756 | 4.822732e-49 | -8.615850e-47 |
| Msa0380590 | Msa0852620 | 0.809152 | 2.179196e-50 | -8.615850e-47 |
| Msa0388520 | Msa0852620 | 0.809180 | 2.149607e-50 | -8.615850e-47 |
| Msa0432260 | Msa0852620 | -0.807652 | 4.552770e-50 | -8.615850e-47 |
| Msa0471870 | Msa0852620 | 0.805367 | 1.381214e-49 | -8.615850e-47 |
| Msa0260980 | Msa0852620 | 0.803794 | 2.940223e-49 | -8.615850e-47 |
| Msa0277320 | Msa0852620 | 0.801803 | 7.578221e-49 | -8.615850e-47 |
| Msa0315660 | Msa0852620 | 0.820599 | 6.298920e-53 | -8.615850e-47 |
| Msa0317300 | Msa0852620 | 0.811035 | 8.562642e-51 | -8.615850e-47 |
| Msa0341860 | Msa0852620 | -0.803846 | 2.868769e-49 | -8.615850e-47 |
| Msa0500420 | Msa0852620 | 0.811435 | 7.010148e-51 | -8.615850e-47 |
| Msa0521100 | Msa0852620 | -0.806366 | 8.518220e-50 | -8.615850e-47 |
| Msa0529360 | Msa0852620 | 0.805158 | 1.527736e-49 | -8.615850e-47 |
| Msa0530660 | Msa0852620 | 0.810867 | 9.312361e-51 | -8.615850e-47 |
| Msa0566460 | Msa0852620 | 0.822442 | 2.363277e-53 | -8.615850e-47 |
| Msa0587180 | Msa0852620 | 0.824293 | 8.732783e-54 | -8.615850e-47 |
| Msa0846900 | Msa0852620 | 0.801141 | 1.035902e-48 | -8.615850e-47 |
| Msa0852620 | Msa0880050 | 0.806175 | 9.347142e-50 | -8.615850e-47 |
| Msa0852620 | Msa0987670 | 0.803600 | 3.226225e-49 | -8.615850e-47 |
| Msa0852620 | Msa1026710 | 0.837133 | 6.220188e-57 | -8.615850e-47 |
| Msa0852620 | Msa1041830 | 0.805246 | 1.464166e-49 | -8.615850e-47 |
| Msa0852620 | Msa1124980 | 0.806758 | 7.041919e-50 | -8.615850e-47 |
| Msa0852620 | Msa1130770 | 0.816983 | 4.173567e-52 | -8.615850e-47 |
| Msa0852620 | Msa1167360 | 0.809430 | 1.899370e-50 | -8.615850e-47 |
| Msa0852620 | Msa1180840 | 0.823375 | 1.433193e-53 | -8.615850e-47 |
| Msa0852620 | Msa1186260 | 0.809623 | 1.726592e-50 | -8.615850e-47 |
| Msa0852620 | Msa1240060 | 0.815616 | 8.440593e-52 | -8.615850e-47 |
| Msa0852620 | Msa1263000 | 0.807928 | 3.977863e-50 | -8.615850e-47 |
| Msa0852620 | Msa1281370 | 0.829340 | 5.438150e-55 | -8.615850e-47 |
| Msa0852620 | Msa1297470 | 0.808571 | 2.900587e-50 | -8.615850e-47 |
| Msa0852620 | Msa1320530 | 0.820884 | 5.417994e-53 | -8.615850e-47 |
| Msa0852620 | Msa1347610 | 0.833772 | 4.401625e-56 | -8.615850e-47 |
| Msa0852620 | Msa1371800 | 0.815914 | 7.243264e-52 | -8.615850e-47 |
| Msa0852620 | Msa1376310 | 0.816184 | 6.302415e-52 | -8.615850e-47 |
| Msa0852620 | Msa1385570 | 0.811041 | 8.535782e-51 | -8.615850e-47 |
| Msa0852620 | Msa1395050 | 0.811219 | 7.809636e-51 | -8.615850e-47 |
| Msa0852620 | Msa1395700 | -0.818419 | 1.979610e-52 | -8.615850e-47 |
| Msa0852620 | Msa1414650 | 0.822750 | 2.004006e-53 | -8.615850e-47 |
| Msa0852620 | Msa1423050 | 0.803560 | 3.288795e-49 | -8.615850e-47 |
| Msa0852620 | Msa1447900 | 0.818743 | 1.671288e-52 | -8.615850e-47 |
| Msa0852620 | Msa1449770 | 0.801280 | 9.701586e-49 | -8.615850e-47 |
| Msa0852620 | Msa1460970 | 0.832323 | 1.009101e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0852620 | MtrunA17_Chr5g0429051 | 99.162 | 358 | 3 | 0 | 1 | 358 | 1 | 358 | 0.0 | 724 |
| Msa0852620 | MtrunA17_Chr1g0179211 | 87.430 | 358 | 45 | 0 | 1 | 358 | 1 | 358 | 0.0 | 648 |
| Msa0852620 | MtrunA17_Chr7g0265821 | 85.754 | 358 | 51 | 0 | 1 | 358 | 1 | 358 | 0.0 | 645 |
| Msa0852620 | MtrunA17_Chr5g0447091 | 78.212 | 358 | 77 | 1 | 1 | 358 | 1 | 357 | 0.0 | 567 |
| Msa0852620 | MtrunA17_Chr5g0429031 | 93.365 | 211 | 14 | 0 | 1 | 211 | 42 | 252 | 8.55e-143 | 404 |
| Msa0852620 | MtrunA17_Chr4g0035951 | 56.818 | 352 | 147 | 4 | 8 | 358 | 53 | 400 | 1.52e-135 | 392 |
| Msa0852620 | MtrunA17_Chr4g0028361 | 56.818 | 352 | 147 | 4 | 8 | 358 | 53 | 400 | 2.04e-135 | 391 |
| Msa0852620 | MtrunA17_Chr1g0208981 | 54.213 | 356 | 158 | 4 | 4 | 358 | 40 | 391 | 1.45e-133 | 386 |
| Msa0852620 | MtrunA17_Chr5g0429021 | 97.710 | 131 | 3 | 0 | 228 | 358 | 1 | 131 | 1.91e-86 | 257 |
| Msa0852620 | MtrunA17_Chr4g0035981 | 54.812 | 239 | 103 | 4 | 121 | 358 | 6 | 240 | 1.69e-83 | 253 |
| Msa0852620 | MtrunA17_Chr7g0265811 | 67.708 | 96 | 6 | 1 | 112 | 207 | 21 | 91 | 4.24e-36 | 126 |
| Msa0852620 | MtrunA17_Chr4g0035971 | 57.955 | 88 | 37 | 0 | 8 | 95 | 51 | 138 | 1.08e-26 | 103 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0852620 | AT3G52930.1 | 87.709 | 358 | 44 | 0 | 1 | 358 | 1 | 358 | 0.0 | 647 |
| Msa0852620 | AT2G36460.1 | 86.592 | 358 | 48 | 0 | 1 | 358 | 1 | 358 | 0.0 | 642 |
| Msa0852620 | AT5G03690.2 | 86.630 | 359 | 47 | 1 | 1 | 358 | 1 | 359 | 0.0 | 620 |
| Msa0852620 | AT5G03690.1 | 87.106 | 349 | 44 | 1 | 11 | 358 | 45 | 393 | 0.0 | 606 |
| Msa0852620 | AT4G26530.1 | 76.536 | 358 | 84 | 0 | 1 | 358 | 1 | 358 | 0.0 | 565 |
| Msa0852620 | AT4G26530.3 | 76.536 | 358 | 84 | 0 | 1 | 358 | 1 | 358 | 0.0 | 565 |
| Msa0852620 | AT4G26530.2 | 76.536 | 358 | 84 | 0 | 1 | 358 | 1 | 358 | 0.0 | 565 |
| Msa0852620 | AT4G26520.1 | 71.229 | 358 | 103 | 0 | 1 | 358 | 1 | 358 | 0.0 | 520 |
| Msa0852620 | AT4G26520.3 | 71.348 | 356 | 102 | 0 | 1 | 356 | 1 | 356 | 0.0 | 515 |
| Msa0852620 | AT4G26520.2 | 71.347 | 349 | 100 | 0 | 10 | 358 | 7 | 355 | 0.0 | 508 |
| Msa0852620 | AT4G26520.4 | 71.347 | 349 | 100 | 0 | 10 | 358 | 7 | 355 | 0.0 | 508 |
| Msa0852620 | AT2G36460.3 | 87.640 | 267 | 33 | 0 | 92 | 358 | 1 | 267 | 8.60e-176 | 489 |
| Msa0852620 | AT2G36460.2 | 87.640 | 267 | 33 | 0 | 92 | 358 | 1 | 267 | 8.60e-176 | 489 |
| Msa0852620 | AT5G03690.3 | 86.891 | 267 | 34 | 1 | 93 | 358 | 1 | 267 | 2.64e-164 | 460 |
| Msa0852620 | AT5G03690.4 | 86.891 | 267 | 34 | 1 | 93 | 358 | 1 | 267 | 2.64e-164 | 460 |
| Msa0852620 | AT4G38970.1 | 57.062 | 354 | 147 | 4 | 6 | 358 | 49 | 398 | 2.85e-137 | 396 |
| Msa0852620 | AT2G21330.1 | 57.062 | 354 | 147 | 4 | 6 | 358 | 50 | 399 | 1.48e-136 | 394 |
| Msa0852620 | AT2G01140.1 | 55.398 | 352 | 152 | 4 | 8 | 358 | 44 | 391 | 1.15e-133 | 387 |
| Msa0852620 | AT2G21330.3 | 55.085 | 354 | 144 | 5 | 6 | 358 | 50 | 389 | 8.44e-128 | 372 |
| Msa0852620 | AT4G38970.2 | 57.143 | 259 | 109 | 2 | 6 | 263 | 49 | 306 | 5.81e-99 | 298 |
| Msa0852620 | AT2G21330.2 | 55.985 | 259 | 112 | 2 | 6 | 263 | 50 | 307 | 1.72e-97 | 292 |
Find 144 sgRNAs with CRISPR-Local
Find 202 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTCGATTTCGGATTAATTT+AGG | 0.174132 | 5_4:+43774786 | None:intergenic |
| TGGACCCTTTCCTTCTCTTT+TGG | 0.209134 | 5_4:-43775256 | Msa0852620:CDS |
| TGAGAAATAAAGTGAGGTTT+TGG | 0.257019 | 5_4:+43777265 | None:intergenic |
| CTTACCCTTGACTTGGTTGA+TGG | 0.263243 | 5_4:+43775285 | None:intergenic |
| ATTCTTAGTCGGGATTAAAT+AGG | 0.294900 | 5_4:-43774663 | Msa0852620:three_prime_UTR |
| TGATCGAGGTAGGTTTGTTT+TGG | 0.314472 | 5_4:+43777192 | None:intergenic |
| AACGAAGCTGGTGTGCTTCC+TGG | 0.322802 | 5_4:-43775844 | Msa0852620:CDS |
| GTTAAAACAACATTCGATTT+CGG | 0.324429 | 5_4:+43774775 | None:intergenic |
| GGGTAGGTTAAGAATGAATA+AGG | 0.325827 | 5_4:+43777231 | None:intergenic |
| CTGGTGCACGTTTCGCTAAA+TGG | 0.326388 | 5_4:-43775717 | Msa0852620:CDS |
| GAGAGCTCAGATGGCTCATT+GGG | 0.370996 | 5_4:+43775673 | None:intergenic |
| ACCACCACTCAGGGTCTTGA+TGG | 0.384125 | 5_4:-43775772 | Msa0852620:CDS |
| ACCTTTGGTGCATCAGATCC+AGG | 0.397934 | 5_4:+43775433 | None:intergenic |
| AATTTCAGGTTCAGTGTACT+TGG | 0.398447 | 5_4:-43774909 | Msa0852620:three_prime_UTR |
| GCTTCAAGAGAGTGCCTTCA+AGG | 0.401651 | 5_4:+43775470 | None:intergenic |
| GGTGGTTTCTCCATCAGTTC+CGG | 0.405974 | 5_4:+43775789 | None:intergenic |
| GAGCCTGAGATCCTTGTTGA+TGG | 0.408703 | 5_4:-43775577 | Msa0852620:CDS |
| ACAACCTCGGGTGCAACCTT+TGG | 0.418995 | 5_4:+43775418 | None:intergenic |
| GGTGTCCTTCAGTACCTTAG+TGG | 0.421088 | 5_4:-43776515 | Msa0852620:CDS |
| AGCAGCAAGAATACCCTTGC+CGG | 0.424830 | 5_4:+43776640 | None:intergenic |
| AAGGGTACCGTTGAGCTTGC+CGG | 0.426023 | 5_4:-43775808 | Msa0852620:CDS |
| GATCCAGGGGTAACCATGTT+AGG | 0.432972 | 5_4:+43775448 | None:intergenic |
| CTGCAGCGGTGCTTTGGTAG+AGG | 0.433294 | 5_4:+43776471 | None:intergenic |
| GACCACCATGTCCTCCTTGA+AGG | 0.437194 | 5_4:-43775484 | Msa0852620:CDS |
| GATGAGTCAACTGGAACAAT+TGG | 0.437327 | 5_4:-43776617 | Msa0852620:CDS |
| ATATAGTGATTATGATGGAT+TGG | 0.437581 | 5_4:+43777294 | None:intergenic |
| AGTACCCTCAAGGCATGGTC+TGG | 0.442363 | 5_4:-43775217 | Msa0852620:CDS |
| TTGGCATATGACTGCATATC+GGG | 0.442827 | 5_4:+43775624 | None:intergenic |
| TAGTGGAGTCATCCTCTTTG+AGG | 0.444154 | 5_4:-43776498 | Msa0852620:CDS |
| TTTATATATAGTGATTATGA+TGG | 0.454462 | 5_4:+43777289 | None:intergenic |
| AGAGAGCTCAGATGGCTCAT+TGG | 0.456356 | 5_4:+43775672 | None:intergenic |
| AGGATCTCAGGCTCAACAAT+TGG | 0.457558 | 5_4:+43775586 | None:intergenic |
| TGTGAGTATCATTCTTAGTC+GGG | 0.460762 | 5_4:-43774673 | Msa0852620:three_prime_UTR |
| ATGGCTTCTTACCCTTGACT+TGG | 0.461709 | 5_4:+43775278 | None:intergenic |
| GGACACCAGGGGCGGTGAAA+AGG | 0.463623 | 5_4:+43776531 | None:intergenic |
| CCATGAGAATGCCTATGGTT+TGG | 0.465357 | 5_4:-43775647 | Msa0852620:CDS |
| GCTAATTCTGAGGCTACTCT+TGG | 0.466145 | 5_4:-43775142 | Msa0852620:CDS |
| CTCAAGAAGCTTTGTTGACA+AGG | 0.466664 | 5_4:-43775171 | Msa0852620:CDS |
| TATAGTGATTATGATGGATT+GGG | 0.466756 | 5_4:+43777295 | None:intergenic |
| TGGCGTGCAGTGCTTAAAAT+CGG | 0.467744 | 5_4:-43775697 | Msa0852620:CDS |
| CTTGCTGCTGATGAGTCAAC+TGG | 0.467935 | 5_4:-43776626 | Msa0852620:CDS |
| CTTGGTCCAACCCGAGCTAA+AGG | 0.468746 | 5_4:-43774891 | Msa0852620:three_prime_UTR |
| CTCTACCAAAGCACCGCTGC+AGG | 0.473908 | 5_4:-43776470 | Msa0852620:intron |
| CCAGACAAGAAAACAACAGC+TGG | 0.481066 | 5_4:+43775346 | None:intergenic |
| AAGTACCTGCAGCGGTGCTT+TGG | 0.482170 | 5_4:+43776465 | None:intergenic |
| CTTGCCGGGTGTGCCGATGT+AGG | 0.484543 | 5_4:+43776655 | None:intergenic |
| TACAAGGGTAACTCTAAACT+TGG | 0.485439 | 5_4:-43775115 | Msa0852620:CDS |
| GTGTGCTCAGCAACAACCTC+GGG | 0.487306 | 5_4:+43775406 | None:intergenic |
| AGCTTTGTTGACAAGGGCTA+AGG | 0.490730 | 5_4:-43775164 | Msa0852620:CDS |
| TTTATAATAACCCTTTAGCT+CGG | 0.494818 | 5_4:+43774880 | None:intergenic |
| TGCAGCGGTGCTTTGGTAGA+GGG | 0.495649 | 5_4:+43776472 | None:intergenic |
| TTGGTACAAGTCCATTCTCT+TGG | 0.496399 | 5_4:+43775605 | None:intergenic |
| TTATAATAACCCTTTAGCTC+GGG | 0.498924 | 5_4:+43774881 | None:intergenic |
| GTTGATGTCTTGAACGAAGC+TGG | 0.500977 | 5_4:-43775856 | Msa0852620:CDS |
| AGCTGGGACTGCAGCAGGTA+CGG | 0.503571 | 5_4:+43775363 | None:intergenic |
| GCTGCCTACATCGGCACACC+CGG | 0.503985 | 5_4:-43776659 | Msa0852620:CDS |
| CTTGGCATATGACTGCATAT+CGG | 0.504914 | 5_4:+43775623 | None:intergenic |
| TGCGAGACAGAATAATTGCT+TGG | 0.506543 | 5_4:-43774967 | Msa0852620:three_prime_UTR |
| TGTGCCGATGTAGGCAGCAT+TGG | 0.506890 | 5_4:+43776664 | None:intergenic |
| GTTGAGCTTGCCGGAACTGA+TGG | 0.507933 | 5_4:-43775799 | Msa0852620:CDS |
| GGTCCATCAACAAGGATCTC+AGG | 0.508887 | 5_4:+43775574 | None:intergenic |
| TCTATCCATGAGAATGCCTA+TGG | 0.509032 | 5_4:-43775652 | Msa0852620:CDS |
| TGTGAGCATAGCTTGTTTGG+CGG | 0.509637 | 5_4:-43774627 | Msa0852620:three_prime_UTR |
| TGGTGTGCTTCCTGGTATCA+AGG | 0.513204 | 5_4:-43775836 | Msa0852620:CDS |
| GGGCGGTGAAAAGGAGTTCA+CGG | 0.513566 | 5_4:+43776540 | None:intergenic |
| CCCTTGTCAACCTTGATACC+AGG | 0.513576 | 5_4:+43775826 | None:intergenic |
| GCAGTCATATGCCAAGAGAA+TGG | 0.513764 | 5_4:-43775616 | Msa0852620:CDS |
| CCCTTCCAAAAGAGAAGGAA+AGG | 0.518782 | 5_4:+43775251 | None:intergenic |
| AATAACCCTTTAGCTCGGGT+TGG | 0.519996 | 5_4:+43774885 | None:intergenic |
| TTGGTCCAACCCGAGCTAAA+GGG | 0.520195 | 5_4:-43774890 | Msa0852620:three_prime_UTR |
| ACAACAGCTGGGACTGCAGC+AGG | 0.520425 | 5_4:+43775358 | None:intergenic |
| ATGTGAGTATCATTCTTAGT+CGG | 0.524708 | 5_4:-43774674 | Msa0852620:three_prime_UTR |
| CCCTGGATCTGATGCACCAA+AGG | 0.525088 | 5_4:-43775434 | Msa0852620:CDS |
| CTACATCGGCACACCCGGCA+AGG | 0.526541 | 5_4:-43776654 | Msa0852620:CDS |
| CTAAGGTACTGAAGGACACC+AGG | 0.526807 | 5_4:+43776518 | None:intergenic |
| TCGTTCAAGACATCAACAAA+AGG | 0.529185 | 5_4:+43775862 | None:intergenic |
| TAAACACGGAAGAAAACCTA+TGG | 0.529302 | 5_4:+43774715 | None:intergenic |
| TGGTGGACAGAGTGAGGAAG+AGG | 0.529702 | 5_4:-43775326 | Msa0852620:CDS |
| TGACTTGGTTGATGGCATTG+AGG | 0.532962 | 5_4:+43775293 | None:intergenic |
| GGCTACTCTTGGAACTTACA+AGG | 0.533473 | 5_4:-43775131 | Msa0852620:CDS |
| ATTGCCAATGCTGCCTACAT+CGG | 0.536003 | 5_4:-43776668 | Msa0852620:CDS |
| GGTAACTCTAAACTTGGTGC+TGG | 0.539715 | 5_4:-43775109 | Msa0852620:CDS |
| AAGCCTAACATGGTTACCCC+TGG | 0.543234 | 5_4:-43775451 | Msa0852620:CDS |
| TTCACGGAGAGCACGTCTGT+TGG | 0.544051 | 5_4:+43776556 | None:intergenic |
| CACTCTCTTGAAGCCTAACA+TGG | 0.547031 | 5_4:-43775461 | Msa0852620:CDS |
| TGTCCTTGCAGCATGCTACA+AGG | 0.547185 | 5_4:-43775515 | Msa0852620:CDS |
| CCAAACCATAGGCATTCTCA+TGG | 0.550708 | 5_4:+43775647 | None:intergenic |
| GATTTCGGATTAATTTAGGA+TGG | 0.552335 | 5_4:+43774790 | None:intergenic |
| ATTTCGGATTAATTTAGGAT+GGG | 0.553743 | 5_4:+43774791 | None:intergenic |
| AAAGAGAAGGAAAGGGTCCA+TGG | 0.554272 | 5_4:+43775259 | None:intergenic |
| AAGTCAAGGGTAAGAAGCCA+TGG | 0.558340 | 5_4:-43775276 | Msa0852620:CDS |
| TCCTGGTATCAAGGTTGACA+AGG | 0.560548 | 5_4:-43775827 | Msa0852620:CDS |
| GCAGCAAGAATACCCTTGCC+GGG | 0.561946 | 5_4:+43776641 | None:intergenic |
| AAGTTCGACATGATCGAGGT+AGG | 0.562374 | 5_4:+43777182 | None:intergenic |
| ACTCAGGGTCTTGATGGACT+TGG | 0.562479 | 5_4:-43775766 | Msa0852620:CDS |
| CTTGTCTGGTGGACAGAGTG+AGG | 0.562758 | 5_4:-43775332 | Msa0852620:CDS |
| CTCAGAGAGTCTTCATGTGA+AGG | 0.562837 | 5_4:-43775083 | Msa0852620:CDS |
| TGATGGAGAAACCACCACTC+AGG | 0.570496 | 5_4:-43775782 | Msa0852620:CDS |
| GATGGCATTGAGGTTGACAC+TGG | 0.575533 | 5_4:+43775303 | None:intergenic |
| GGTAGAGGGTTTCCTCAAAG+AGG | 0.575881 | 5_4:+43776486 | None:intergenic |
| TGTGCTAAGTACTATGAAGC+TGG | 0.576101 | 5_4:-43775736 | Msa0852620:CDS |
| TACATCGGCACACCCGGCAA+GGG | 0.581098 | 5_4:-43776653 | Msa0852620:CDS |
| CCTTTGGTGCATCAGATCCA+GGG | 0.582593 | 5_4:+43775434 | None:intergenic |
| GATGGAGAAACCACCACTCA+GGG | 0.584183 | 5_4:-43775781 | Msa0852620:CDS |
| CAATGCCATCAACCAAGTCA+AGG | 0.584504 | 5_4:-43775290 | Msa0852620:CDS |
| ATCAGTTCCGGCAAGCTCAA+CGG | 0.584893 | 5_4:+43775801 | None:intergenic |
| GAGTGCCTTCAAGGAGGACA+TGG | 0.586352 | 5_4:+43775479 | None:intergenic |
| AGAGAGTGAGAAATAAAGTG+AGG | 0.587374 | 5_4:+43777259 | None:intergenic |
| TGCACCAAAGGTTGCACCCG+AGG | 0.589398 | 5_4:-43775422 | Msa0852620:CDS |
| CAAAGAGGATGACTCCACTA+AGG | 0.590051 | 5_4:+43776501 | None:intergenic |
| TCATGGATAGAGAGCTCAGA+TGG | 0.590458 | 5_4:+43775664 | None:intergenic |
| AAGTATTGATGAGTCAAAGT+TGG | 0.592391 | 5_4:-43775055 | Msa0852620:exon |
| TGACTCCACTAAGGTACTGA+AGG | 0.592512 | 5_4:+43776510 | None:intergenic |
| GCATGCTGCAAGGACACGCT+CGG | 0.593245 | 5_4:+43775522 | None:intergenic |
| TGCATATCGGGCCAAACCAT+AGG | 0.596299 | 5_4:+43775636 | None:intergenic |
| AAGTGCCCTTCCAAAAGAGA+AGG | 0.603752 | 5_4:+43775246 | None:intergenic |
| AACAGAGTACCCTCAAGGCA+TGG | 0.603839 | 5_4:-43775222 | Msa0852620:CDS |
| AATGCCATCAACCAAGTCAA+GGG | 0.616498 | 5_4:-43775289 | Msa0852620:CDS |
| CCTTCCAAAAGAGAAGGAAA+GGG | 0.621042 | 5_4:+43775252 | None:intergenic |
| TCCATCAAGACCCTGAGTGG+TGG | 0.624702 | 5_4:+43775771 | None:intergenic |
| AAGCCTTGTAGCATGCTGCA+AGG | 0.628730 | 5_4:+43775512 | None:intergenic |
| TGTCATGAGGTCCATCAACA+AGG | 0.633917 | 5_4:+43775566 | None:intergenic |
| AGTGTGCTCAGCAACAACCT+CGG | 0.636805 | 5_4:+43775405 | None:intergenic |
| TGCCTTCAAGGAGGACATGG+TGG | 0.637134 | 5_4:+43775482 | None:intergenic |
| TCAAGAAGCTTTGTTGACAA+GGG | 0.640371 | 5_4:-43775170 | Msa0852620:CDS |
| CAGACAAGAAAACAACAGCT+GGG | 0.641298 | 5_4:+43775347 | None:intergenic |
| AAGGGCTAAGGCTAATTCTG+AGG | 0.650952 | 5_4:-43775152 | Msa0852620:CDS |
| CTTTGGTGCATCAGATCCAG+GGG | 0.655083 | 5_4:+43775435 | None:intergenic |
| AAGTCCATCAAGACCCTGAG+TGG | 0.657276 | 5_4:+43775768 | None:intergenic |
| GCTACTCTTGGAACTTACAA+GGG | 0.661396 | 5_4:-43775130 | Msa0852620:CDS |
| TGGAAAAGAAGAAAATGTGA+AGG | 0.663229 | 5_4:-43775197 | Msa0852620:CDS |
| CTTGAAGTTCGACATGATCG+AGG | 0.672998 | 5_4:+43777178 | None:intergenic |
| CCTGGTATCAAGGTTGACAA+GGG | 0.676179 | 5_4:-43775826 | Msa0852620:CDS |
| ACTTCAACAGAGTACCCTCA+AGG | 0.678437 | 5_4:-43775227 | Msa0852620:CDS |
| GGGAAACAAGACAACAAAGG+AGG | 0.683439 | 5_4:+43777315 | None:intergenic |
| AACTTCAAGAGCAAGTACCA+TGG | 0.686368 | 5_4:-43777164 | Msa0852620:intron |
| TAAGGTACTGAAGGACACCA+GGG | 0.689754 | 5_4:+43776519 | None:intergenic |
| TAGGAAGTAAGTACCTGCAG+CGG | 0.691298 | 5_4:+43776457 | None:intergenic |
| CTTCACATGAAGACTCTCTG+AGG | 0.707482 | 5_4:+43775084 | None:intergenic |
| AGAGCTCAGATGGCTCATTG+GGG | 0.708734 | 5_4:+43775674 | None:intergenic |
| ATTGGGAAACAAGACAACAA+AGG | 0.714069 | 5_4:+43777312 | None:intergenic |
| TCAAGAGAGTGCCTTCAAGG+AGG | 0.717476 | 5_4:+43775473 | None:intergenic |
| AAGGTACTGAAGGACACCAG+GGG | 0.750874 | 5_4:+43776520 | None:intergenic |
| GTACTGAAGGACACCAGGGG+CGG | 0.769749 | 5_4:+43776523 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTTTAATTTGAAATTATG+TGG | - | chr5_4:43777082-43777101 | Msa0852620:intron | 10.0% |
| !! | TTTATATATAGTGATTATGA+TGG | + | chr5_4:43774630-43774649 | None:intergenic | 15.0% |
| !! | TATTTATGAAATTGTAAATC+AGG | - | chr5_4:43775017-43775036 | Msa0852620:three_prime_UTR | 15.0% |
| !! | ATTTATGAAATTGTAAATCA+GGG | - | chr5_4:43775018-43775037 | Msa0852620:three_prime_UTR | 15.0% |
| !!! | TACATGAATGTATTTTTTTT+AGG | - | chr5_4:43776027-43776046 | Msa0852620:intron | 15.0% |
| !!! | TTTGTTCTGTTTTATTTGTA+TGG | - | chr5_4:43774878-43774897 | Msa0852620:three_prime_UTR | 20.0% |
| !! | ATTTATATCAAAACCCTTTA+AGG | + | chr5_4:43774986-43775005 | None:intergenic | 20.0% |
| !!! | TGTCTAATCATGATTAATTT+TGG | - | chr5_4:43775142-43775161 | Msa0852620:CDS | 20.0% |
| !!! | GTCTAATCATGATTAATTTT+GGG | - | chr5_4:43775143-43775162 | Msa0852620:CDS | 20.0% |
| !!! | TTTGTTCTTTTGATAATTTC+AGG | - | chr5_4:43776993-43777012 | Msa0852620:intron | 20.0% |
| !!! | TATAGTGATTATGATGGATT+GGG | + | chr5_4:43774624-43774643 | None:intergenic | 25.0% |
| !!! | ATATAGTGATTATGATGGAT+TGG | + | chr5_4:43774625-43774644 | None:intergenic | 25.0% |
| ! | AAGAGAATAGAATTATACCA+TGG | + | chr5_4:43774772-43774791 | None:intergenic | 25.0% |
| !!! | TCTGTTTTATTTGTATGGAT+CGG | - | chr5_4:43774883-43774902 | Msa0852620:three_prime_UTR | 25.0% |
| ! | AAATCAAGTAGATCTGTTTA+AGG | - | chr5_4:43775047-43775066 | Msa0852620:three_prime_UTR | 25.0% |
| ! | TTAATTAGATTGTTGCAGTA+AGG | - | chr5_4:43775176-43775195 | Msa0852620:CDS | 25.0% |
| ! | GTAAATATTGTTCAGATTGT+AGG | + | chr5_4:43775488-43775507 | None:intergenic | 25.0% |
| !! | ATGTATTGATGAACAATTCA+AGG | + | chr5_4:43775541-43775560 | None:intergenic | 25.0% |
| ! | TGCTTTGTATTGTAAAAGTT+TGG | - | chr5_4:43775611-43775630 | Msa0852620:CDS | 25.0% |
| ! | CATATAAGAAAACGTGTTAA+AGG | + | chr5_4:43775755-43775774 | None:intergenic | 25.0% |
| !!! | ATTTTTTGCATCCCAAAAAA+GGG | + | chr5_4:43775885-43775904 | None:intergenic | 25.0% |
| !!! | TCTTGTTATTTTGAGTATTG+TGG | - | chr5_4:43776919-43776938 | Msa0852620:intron | 25.0% |
| ! | TTTATAATAACCCTTTAGCT+CGG | + | chr5_4:43777039-43777058 | None:intergenic | 25.0% |
| !! | ATTTCGGATTAATTTAGGAT+GGG | + | chr5_4:43777128-43777147 | None:intergenic | 25.0% |
| ! | ATTCGATTTCGGATTAATTT+AGG | + | chr5_4:43777133-43777152 | None:intergenic | 25.0% |
| ! | GTTAAAACAACATTCGATTT+CGG | + | chr5_4:43777144-43777163 | None:intergenic | 25.0% |
| !! | TATTTTCTTCAGTATTCCAT+AGG | - | chr5_4:43777185-43777204 | Msa0852620:exon | 25.0% |
| ! | GAGAAATAAAGTGAGGTTTT+GGG | + | chr5_4:43774653-43774672 | None:intergenic | 30.0% |
| ! | TGAGAAATAAAGTGAGGTTT+TGG | + | chr5_4:43774654-43774673 | None:intergenic | 30.0% |
| TTGGAAGAGAATGAAAAAGA+GGG | + | chr5_4:43774708-43774727 | None:intergenic | 30.0% | |
| TTTGGAAGAGAATGAAAAAG+AGG | + | chr5_4:43774709-43774728 | None:intergenic | 30.0% | |
| AGATCTATTGTTATCACCTT+CGG | - | chr5_4:43774821-43774840 | Msa0852620:three_prime_UTR | 30.0% | |
| TCATTACATCAGATCCTTAA+AGG | - | chr5_4:43774969-43774988 | Msa0852620:three_prime_UTR | 30.0% | |
| CATTACATCAGATCCTTAAA+GGG | - | chr5_4:43774970-43774989 | Msa0852620:three_prime_UTR | 30.0% | |
| AGTAAGGTTTATAGTTGTGT+TGG | - | chr5_4:43775192-43775211 | Msa0852620:CDS | 30.0% | |
| TATTGTAAAAGTTTGGATCG+TGG | - | chr5_4:43775618-43775637 | Msa0852620:CDS | 30.0% | |
| ATCTATTGCTTTGTGAAGTT+TGG | - | chr5_4:43775708-43775727 | Msa0852620:CDS | 30.0% | |
| AAATAGTGATCCATCATGTT+AGG | - | chr5_4:43775808-43775827 | Msa0852620:CDS | 30.0% | |
| !!! | TTTTTTGCATCCCAAAAAAG+GGG | + | chr5_4:43775884-43775903 | None:intergenic | 30.0% |
| !!! | CATTTTTTGCATCCCAAAAA+AGG | + | chr5_4:43775886-43775905 | None:intergenic | 30.0% |
| ! | TTCTTGATTGCTTCTTTTTG+TGG | - | chr5_4:43775960-43775979 | Msa0852620:intron | 30.0% |
| TGGAAAAGAAGAAAATGTGA+AGG | - | chr5_4:43776719-43776738 | Msa0852620:intron | 30.0% | |
| !! | AAGTATTGATGAGTCAAAGT+TGG | - | chr5_4:43776861-43776880 | Msa0852620:intron | 30.0% |
| !! | GTCTCTTTTGAAGATTAGAA+AGG | - | chr5_4:43776885-43776904 | Msa0852620:intron | 30.0% |
| !! | TCTTTTGAAGATTAGAAAGG+AGG | - | chr5_4:43776888-43776907 | Msa0852620:intron | 30.0% |
| !! | CTTTTGAAGATTAGAAAGGA+GGG | - | chr5_4:43776889-43776908 | Msa0852620:intron | 30.0% |
| ! | TTATAATAACCCTTTAGCTC+GGG | + | chr5_4:43777038-43777057 | None:intergenic | 30.0% |
| GATTTCGGATTAATTTAGGA+TGG | + | chr5_4:43777129-43777148 | None:intergenic | 30.0% | |
| !!! | TGTTTTGATGCACATAAACA+CGG | + | chr5_4:43777218-43777237 | None:intergenic | 30.0% |
| ATGTGAGTATCATTCTTAGT+CGG | - | chr5_4:43777242-43777261 | Msa0852620:five_prime_UTR | 30.0% | |
| ATTCTTAGTCGGGATTAAAT+AGG | - | chr5_4:43777253-43777272 | Msa0852620:five_prime_UTR | 30.0% | |
| !! | GGAGATTTTGCTGTATATAA+GGG | - | chr5_4:43777310-43777329 | Msa0852620:five_prime_UTR | 30.0% |
| ATTGGGAAACAAGACAACAA+AGG | + | chr5_4:43774607-43774626 | None:intergenic | 35.0% | |
| AGAGAGTGAGAAATAAAGTG+AGG | + | chr5_4:43774660-43774679 | None:intergenic | 35.0% | |
| GGGTAGGTTAAGAATGAATA+AGG | + | chr5_4:43774688-43774707 | None:intergenic | 35.0% | |
| AAGAGAATGAAAAAGAGGGT+AGG | + | chr5_4:43774704-43774723 | None:intergenic | 35.0% | |
| AAAAATTGAGCAAGATCCGA+AGG | + | chr5_4:43774840-43774859 | None:intergenic | 35.0% | |
| TTGTATGGATCGGTAATTGT+TGG | - | chr5_4:43774893-43774912 | Msa0852620:three_prime_UTR | 35.0% | |
| TTGTTCAGATTGTAGGAACT+AGG | + | chr5_4:43775481-43775500 | None:intergenic | 35.0% | |
| TCTATTGCTTCCTAACATGA+TGG | + | chr5_4:43775821-43775840 | None:intergenic | 35.0% | |
| ! | TTTTTGCATCCCAAAAAAGG+GGG | + | chr5_4:43775883-43775902 | None:intergenic | 35.0% |
| TCGTTCAAGACATCAACAAA+AGG | + | chr5_4:43776057-43776076 | None:intergenic | 35.0% | |
| !! | TCAAGAAGCTTTGTTGACAA+GGG | - | chr5_4:43776746-43776765 | Msa0852620:intron | 35.0% |
| TACAAGGGTAACTCTAAACT+TGG | - | chr5_4:43776801-43776820 | Msa0852620:intron | 35.0% | |
| !! | AATTTCAGGTTCAGTGTACT+TGG | - | chr5_4:43777007-43777026 | Msa0852620:intron | 35.0% |
| TAAACACGGAAGAAAACCTA+TGG | + | chr5_4:43777204-43777223 | None:intergenic | 35.0% | |
| TGTGAGTATCATTCTTAGTC+GGG | - | chr5_4:43777243-43777262 | Msa0852620:five_prime_UTR | 35.0% | |
| !!! | TTTTGTGAGCATAGCTTGTT+TGG | - | chr5_4:43777286-43777305 | Msa0852620:five_prime_UTR | 35.0% |
| !! | CGGAGATTTTGCTGTATATA+AGG | - | chr5_4:43777309-43777328 | Msa0852620:five_prime_UTR | 35.0% |
| !! | TGATCGAGGTAGGTTTGTTT+TGG | + | chr5_4:43774727-43774746 | None:intergenic | 40.0% |
| AACTTCAAGAGCAAGTACCA+TGG | - | chr5_4:43774752-43774771 | Msa0852620:three_prime_UTR | 40.0% | |
| GATGAGTCAACTGGAACAAT+TGG | - | chr5_4:43775299-43775318 | Msa0852620:CDS | 40.0% | |
| ! | TTTTGCATCCCAAAAAAGGG+GGG | + | chr5_4:43775882-43775901 | None:intergenic | 40.0% |
| TGTGCTAAGTACTATGAAGC+TGG | - | chr5_4:43776180-43776199 | Msa0852620:intron | 40.0% | |
| TCTATCCATGAGAATGCCTA+TGG | - | chr5_4:43776264-43776283 | Msa0852620:intron | 40.0% | |
| TTGGCATATGACTGCATATC+GGG | + | chr5_4:43776295-43776314 | None:intergenic | 40.0% | |
| CTTGGCATATGACTGCATAT+CGG | + | chr5_4:43776296-43776315 | None:intergenic | 40.0% | |
| TTGGTACAAGTCCATTCTCT+TGG | + | chr5_4:43776314-43776333 | None:intergenic | 40.0% | |
| ! | GCACACTTTTGAATGTCATG+AGG | + | chr5_4:43776366-43776385 | None:intergenic | 40.0% |
| CAGACAAGAAAACAACAGCT+GGG | + | chr5_4:43776572-43776591 | None:intergenic | 40.0% | |
| AATGCCATCAACCAAGTCAA+GGG | - | chr5_4:43776627-43776646 | Msa0852620:CDS | 40.0% | |
| CCTTCCAAAAGAGAAGGAAA+GGG | + | chr5_4:43776667-43776686 | None:intergenic | 40.0% | |
| !! | CCTTTCCTTCTCTTTTGGAA+GGG | - | chr5_4:43776665-43776684 | Msa0852620:CDS | 40.0% |
| !! | CTCAAGAAGCTTTGTTGACA+AGG | - | chr5_4:43776745-43776764 | Msa0852620:intron | 40.0% |
| GCTACTCTTGGAACTTACAA+GGG | - | chr5_4:43776786-43776805 | Msa0852620:intron | 40.0% | |
| TGCGAGACAGAATAATTGCT+TGG | - | chr5_4:43776949-43776968 | Msa0852620:intron | 40.0% | |
| GGGAAACAAGACAACAAAGG+AGG | + | chr5_4:43774604-43774623 | None:intergenic | 45.0% | |
| AAGTTCGACATGATCGAGGT+AGG | + | chr5_4:43774737-43774756 | None:intergenic | 45.0% | |
| CTTGAAGTTCGACATGATCG+AGG | + | chr5_4:43774741-43774760 | None:intergenic | 45.0% | |
| ATTGCCAATGCTGCCTACAT+CGG | - | chr5_4:43775248-43775267 | Msa0852620:CDS | 45.0% | |
| !! | TAAGGTACTGAAGGACACCA+GGG | + | chr5_4:43775400-43775419 | None:intergenic | 45.0% |
| !! | TGACTCCACTAAGGTACTGA+AGG | + | chr5_4:43775409-43775428 | None:intergenic | 45.0% |
| CAAAGAGGATGACTCCACTA+AGG | + | chr5_4:43775418-43775437 | None:intergenic | 45.0% | |
| TAGTGGAGTCATCCTCTTTG+AGG | - | chr5_4:43775418-43775437 | Msa0852620:CDS | 45.0% | |
| TAGGAAGTAAGTACCTGCAG+CGG | + | chr5_4:43775462-43775481 | None:intergenic | 45.0% | |
| !!! | TGCATTTCTCCCCCCTTTTT+TGG | - | chr5_4:43775870-43775889 | Msa0852620:CDS | 45.0% |
| !!! | GCATTTCTCCCCCCTTTTTT+GGG | - | chr5_4:43775871-43775890 | Msa0852620:intron | 45.0% |
| TCAAGAACTGCTTCGTAAGC+AGG | + | chr5_4:43775947-43775966 | None:intergenic | 45.0% | |
| GTTGATGTCTTGAACGAAGC+TGG | - | chr5_4:43776060-43776079 | Msa0852620:intron | 45.0% | |
| TCCTGGTATCAAGGTTGACA+AGG | - | chr5_4:43776089-43776108 | Msa0852620:intron | 45.0% | |
| CCTGGTATCAAGGTTGACAA+GGG | - | chr5_4:43776090-43776109 | Msa0852620:intron | 45.0% | |
| TGGCGTGCAGTGCTTAAAAT+CGG | - | chr5_4:43776219-43776238 | Msa0852620:intron | 45.0% | |
| TCATGGATAGAGAGCTCAGA+TGG | + | chr5_4:43776255-43776274 | None:intergenic | 45.0% | |
| CCAAACCATAGGCATTCTCA+TGG | + | chr5_4:43776272-43776291 | None:intergenic | 45.0% | |
| CCATGAGAATGCCTATGGTT+TGG | - | chr5_4:43776269-43776288 | Msa0852620:intron | 45.0% | |
| GCAGTCATATGCCAAGAGAA+TGG | - | chr5_4:43776300-43776319 | Msa0852620:intron | 45.0% | |
| AGGATCTCAGGCTCAACAAT+TGG | + | chr5_4:43776333-43776352 | None:intergenic | 45.0% | |
| TGTCATGAGGTCCATCAACA+AGG | + | chr5_4:43776353-43776372 | None:intergenic | 45.0% | |
| CACTCTCTTGAAGCCTAACA+TGG | - | chr5_4:43776455-43776474 | Msa0852620:intron | 45.0% | |
| CCAGACAAGAAAACAACAGC+TGG | + | chr5_4:43776573-43776592 | None:intergenic | 45.0% | |
| !!! | CCAGCTGTTGTTTTCTTGTC+TGG | - | chr5_4:43776570-43776589 | Msa0852620:CDS | 45.0% |
| !!! | GCTGTTGTTTTCTTGTCTGG+TGG | - | chr5_4:43776573-43776592 | Msa0852620:CDS | 45.0% |
| !! | TGACTTGGTTGATGGCATTG+AGG | + | chr5_4:43776626-43776645 | None:intergenic | 45.0% |
| CAATGCCATCAACCAAGTCA+AGG | - | chr5_4:43776626-43776645 | Msa0852620:CDS | 45.0% | |
| !! | CTTACCCTTGACTTGGTTGA+TGG | + | chr5_4:43776634-43776653 | None:intergenic | 45.0% |
| ATGGCTTCTTACCCTTGACT+TGG | + | chr5_4:43776641-43776660 | None:intergenic | 45.0% | |
| AAGTCAAGGGTAAGAAGCCA+TGG | - | chr5_4:43776640-43776659 | Msa0852620:CDS | 45.0% | |
| AAAGAGAAGGAAAGGGTCCA+TGG | + | chr5_4:43776660-43776679 | None:intergenic | 45.0% | |
| ! | TGGACCCTTTCCTTCTCTTT+TGG | - | chr5_4:43776660-43776679 | Msa0852620:CDS | 45.0% |
| ! | CCCTTTCCTTCTCTTTTGGA+AGG | - | chr5_4:43776664-43776683 | Msa0852620:CDS | 45.0% |
| CCCTTCCAAAAGAGAAGGAA+AGG | + | chr5_4:43776668-43776687 | None:intergenic | 45.0% | |
| AAGTGCCCTTCCAAAAGAGA+AGG | + | chr5_4:43776673-43776692 | None:intergenic | 45.0% | |
| ! | ACTTCAACAGAGTACCCTCA+AGG | - | chr5_4:43776689-43776708 | Msa0852620:intron | 45.0% |
| ! | TTTTCCAGACCATGCCTTGA+GGG | + | chr5_4:43776706-43776725 | None:intergenic | 45.0% |
| !! | AGCTTTGTTGACAAGGGCTA+AGG | - | chr5_4:43776752-43776771 | Msa0852620:intron | 45.0% |
| AAGGGCTAAGGCTAATTCTG+AGG | - | chr5_4:43776764-43776783 | Msa0852620:intron | 45.0% | |
| !! | GCTAATTCTGAGGCTACTCT+TGG | - | chr5_4:43776774-43776793 | Msa0852620:intron | 45.0% |
| GGCTACTCTTGGAACTTACA+AGG | - | chr5_4:43776785-43776804 | Msa0852620:intron | 45.0% | |
| !! | GGTAACTCTAAACTTGGTGC+TGG | - | chr5_4:43776807-43776826 | Msa0852620:intron | 45.0% |
| CTTCACATGAAGACTCTCTG+AGG | + | chr5_4:43776835-43776854 | None:intergenic | 45.0% | |
| CTCAGAGAGTCTTCATGTGA+AGG | - | chr5_4:43776833-43776852 | Msa0852620:intron | 45.0% | |
| ! | AATAACCCTTTAGCTCGGGT+TGG | + | chr5_4:43777034-43777053 | None:intergenic | 45.0% |
| !! | TGTGAGCATAGCTTGTTTGG+CGG | - | chr5_4:43777289-43777308 | Msa0852620:five_prime_UTR | 45.0% |
| AGCAGCAAGAATACCCTTGC+CGG | + | chr5_4:43775279-43775298 | None:intergenic | 50.0% | |
| CTTGCTGCTGATGAGTCAAC+TGG | - | chr5_4:43775290-43775309 | Msa0852620:CDS | 50.0% | |
| !! | AAGGTACTGAAGGACACCAG+GGG | + | chr5_4:43775399-43775418 | None:intergenic | 50.0% |
| !! | CTAAGGTACTGAAGGACACC+AGG | + | chr5_4:43775401-43775420 | None:intergenic | 50.0% |
| GGTGTCCTTCAGTACCTTAG+TGG | - | chr5_4:43775401-43775420 | Msa0852620:CDS | 50.0% | |
| GGTAGAGGGTTTCCTCAAAG+AGG | + | chr5_4:43775433-43775452 | None:intergenic | 50.0% | |
| TGGTGTGCTTCCTGGTATCA+AGG | - | chr5_4:43776080-43776099 | Msa0852620:intron | 50.0% | |
| CCCTTGTCAACCTTGATACC+AGG | + | chr5_4:43776093-43776112 | None:intergenic | 50.0% | |
| ATCAGTTCCGGCAAGCTCAA+CGG | + | chr5_4:43776118-43776137 | None:intergenic | 50.0% | |
| GGTGGTTTCTCCATCAGTTC+CGG | + | chr5_4:43776130-43776149 | None:intergenic | 50.0% | |
| TGATGGAGAAACCACCACTC+AGG | - | chr5_4:43776134-43776153 | Msa0852620:intron | 50.0% | |
| GATGGAGAAACCACCACTCA+GGG | - | chr5_4:43776135-43776154 | Msa0852620:intron | 50.0% | |
| AAGTCCATCAAGACCCTGAG+TGG | + | chr5_4:43776151-43776170 | None:intergenic | 50.0% | |
| !! | ACTCAGGGTCTTGATGGACT+TGG | - | chr5_4:43776150-43776169 | Msa0852620:intron | 50.0% |
| CTGGTGCACGTTTCGCTAAA+TGG | - | chr5_4:43776199-43776218 | Msa0852620:intron | 50.0% | |
| AGAGCTCAGATGGCTCATTG+GGG | + | chr5_4:43776245-43776264 | None:intergenic | 50.0% | |
| GAGAGCTCAGATGGCTCATT+GGG | + | chr5_4:43776246-43776265 | None:intergenic | 50.0% | |
| AGAGAGCTCAGATGGCTCAT+TGG | + | chr5_4:43776247-43776266 | None:intergenic | 50.0% | |
| TGCATATCGGGCCAAACCAT+AGG | + | chr5_4:43776283-43776302 | None:intergenic | 50.0% | |
| GAGCCTGAGATCCTTGTTGA+TGG | - | chr5_4:43776339-43776358 | Msa0852620:intron | 50.0% | |
| GGTCCATCAACAAGGATCTC+AGG | + | chr5_4:43776345-43776364 | None:intergenic | 50.0% | |
| TGTCCTTGCAGCATGCTACA+AGG | - | chr5_4:43776401-43776420 | Msa0852620:intron | 50.0% | |
| ! | AAGCCTTGTAGCATGCTGCA+AGG | + | chr5_4:43776407-43776426 | None:intergenic | 50.0% |
| !! | TCAAGAGAGTGCCTTCAAGG+AGG | + | chr5_4:43776446-43776465 | None:intergenic | 50.0% |
| !! | GCTTCAAGAGAGTGCCTTCA+AGG | + | chr5_4:43776449-43776468 | None:intergenic | 50.0% |
| AAGCCTAACATGGTTACCCC+TGG | - | chr5_4:43776465-43776484 | Msa0852620:intron | 50.0% | |
| GATCCAGGGGTAACCATGTT+AGG | + | chr5_4:43776471-43776490 | None:intergenic | 50.0% | |
| ! | CTTTGGTGCATCAGATCCAG+GGG | + | chr5_4:43776484-43776503 | None:intergenic | 50.0% |
| ! | CCTTTGGTGCATCAGATCCA+GGG | + | chr5_4:43776485-43776504 | None:intergenic | 50.0% |
| ! | ACCTTTGGTGCATCAGATCC+AGG | + | chr5_4:43776486-43776505 | None:intergenic | 50.0% |
| AGTGTGCTCAGCAACAACCT+CGG | + | chr5_4:43776514-43776533 | None:intergenic | 50.0% | |
| ! | GATGGCATTGAGGTTGACAC+TGG | + | chr5_4:43776616-43776635 | None:intergenic | 50.0% |
| ! | AACAGAGTACCCTCAAGGCA+TGG | - | chr5_4:43776694-43776713 | Msa0852620:intron | 50.0% |
| ! | CTTTTCCAGACCATGCCTTG+AGG | + | chr5_4:43776707-43776726 | None:intergenic | 50.0% |
| TTGGTCCAACCCGAGCTAAA+GGG | - | chr5_4:43777026-43777045 | Msa0852620:intron | 50.0% | |
| ! | TGTGCCGATGTAGGCAGCAT+TGG | + | chr5_4:43775255-43775274 | None:intergenic | 55.0% |
| GCAGCAAGAATACCCTTGCC+GGG | + | chr5_4:43775278-43775297 | None:intergenic | 55.0% | |
| ! | TTCACGGAGAGCACGTCTGT+TGG | + | chr5_4:43775363-43775382 | None:intergenic | 55.0% |
| GGGCGGTGAAAAGGAGTTCA+CGG | + | chr5_4:43775379-43775398 | None:intergenic | 55.0% | |
| TGCAGCGGTGCTTTGGTAGA+GGG | + | chr5_4:43775447-43775466 | None:intergenic | 55.0% | |
| AAGTACCTGCAGCGGTGCTT+TGG | + | chr5_4:43775454-43775473 | None:intergenic | 55.0% | |
| AACGAAGCTGGTGTGCTTCC+TGG | - | chr5_4:43776072-43776091 | Msa0852620:intron | 55.0% | |
| !! | AAGGGTACCGTTGAGCTTGC+CGG | - | chr5_4:43776108-43776127 | Msa0852620:intron | 55.0% |
| GTTGAGCTTGCCGGAACTGA+TGG | - | chr5_4:43776117-43776136 | Msa0852620:intron | 55.0% | |
| ACCACCACTCAGGGTCTTGA+TGG | - | chr5_4:43776144-43776163 | Msa0852620:intron | 55.0% | |
| TCCATCAAGACCCTGAGTGG+TGG | + | chr5_4:43776148-43776167 | None:intergenic | 55.0% | |
| GACCACCATGTCCTCCTTGA+AGG | - | chr5_4:43776432-43776451 | Msa0852620:intron | 55.0% | |
| TGCCTTCAAGGAGGACATGG+TGG | + | chr5_4:43776437-43776456 | None:intergenic | 55.0% | |
| GAGTGCCTTCAAGGAGGACA+TGG | + | chr5_4:43776440-43776459 | None:intergenic | 55.0% | |
| CCCTGGATCTGATGCACCAA+AGG | - | chr5_4:43776482-43776501 | Msa0852620:CDS | 55.0% | |
| ACAACCTCGGGTGCAACCTT+TGG | + | chr5_4:43776501-43776520 | None:intergenic | 55.0% | |
| GTGTGCTCAGCAACAACCTC+GGG | + | chr5_4:43776513-43776532 | None:intergenic | 55.0% | |
| ! | CTTGTCTGGTGGACAGAGTG+AGG | - | chr5_4:43776584-43776603 | Msa0852620:CDS | 55.0% |
| ! | TGGTGGACAGAGTGAGGAAG+AGG | - | chr5_4:43776590-43776609 | Msa0852620:CDS | 55.0% |
| AGTACCCTCAAGGCATGGTC+TGG | - | chr5_4:43776699-43776718 | Msa0852620:intron | 55.0% | |
| CTTGGTCCAACCCGAGCTAA+AGG | - | chr5_4:43777025-43777044 | Msa0852620:intron | 55.0% | |
| TACATCGGCACACCCGGCAA+GGG | - | chr5_4:43775263-43775282 | Msa0852620:CDS | 60.0% | |
| ! | GAACTCCTTTTCACCGCCCC+TGG | - | chr5_4:43775380-43775399 | Msa0852620:CDS | 60.0% |
| GTACTGAAGGACACCAGGGG+CGG | + | chr5_4:43775396-43775415 | None:intergenic | 60.0% | |
| CTGCAGCGGTGCTTTGGTAG+AGG | + | chr5_4:43775448-43775467 | None:intergenic | 60.0% | |
| !! | CTCTACCAAAGCACCGCTGC+AGG | - | chr5_4:43775446-43775465 | Msa0852620:CDS | 60.0% |
| GCATGCTGCAAGGACACGCT+CGG | + | chr5_4:43776397-43776416 | None:intergenic | 60.0% | |
| TGCACCAAAGGTTGCACCCG+AGG | - | chr5_4:43776494-43776513 | Msa0852620:CDS | 60.0% | |
| AGCTGGGACTGCAGCAGGTA+CGG | + | chr5_4:43776556-43776575 | None:intergenic | 60.0% | |
| ACAACAGCTGGGACTGCAGC+AGG | + | chr5_4:43776561-43776580 | None:intergenic | 60.0% | |
| GCTGCCTACATCGGCACACC+CGG | - | chr5_4:43775257-43775276 | Msa0852620:CDS | 65.0% | |
| ! | CTTGCCGGGTGTGCCGATGT+AGG | + | chr5_4:43775264-43775283 | None:intergenic | 65.0% |
| CTACATCGGCACACCCGGCA+AGG | - | chr5_4:43775262-43775281 | Msa0852620:CDS | 65.0% | |
| GGACACCAGGGGCGGTGAAA+AGG | + | chr5_4:43775388-43775407 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 43774599 | 43777339 | 43774599 | ID=Msa0852620;Name=Msa0852620 |
| chr5_4 | mRNA | 43774599 | 43777339 | 43774599 | ID=Msa0852620-mRNA-1;Parent=Msa0852620;Name=Msa0852620-mRNA-1;_AED=0.25;_eAED=0.25;_QI=147|1|1|1|1|1|3|470|358 |
| chr5_4 | exon | 43774599 | 43775889 | 43774599 | ID=Msa0852620-mRNA-1:exon:13855;Parent=Msa0852620-mRNA-1 |
| chr5_4 | exon | 43776471 | 43776698 | 43776471 | ID=Msa0852620-mRNA-1:exon:13854;Parent=Msa0852620-mRNA-1 |
| chr5_4 | exon | 43777165 | 43777339 | 43777165 | ID=Msa0852620-mRNA-1:exon:13853;Parent=Msa0852620-mRNA-1 |
| chr5_4 | five_prime_UTR | 43777193 | 43777339 | 43777193 | ID=Msa0852620-mRNA-1:five_prime_utr;Parent=Msa0852620-mRNA-1 |
| chr5_4 | CDS | 43777165 | 43777192 | 43777165 | ID=Msa0852620-mRNA-1:cds;Parent=Msa0852620-mRNA-1 |
| chr5_4 | CDS | 43776471 | 43776698 | 43776471 | ID=Msa0852620-mRNA-1:cds;Parent=Msa0852620-mRNA-1 |
| chr5_4 | CDS | 43775069 | 43775889 | 43775069 | ID=Msa0852620-mRNA-1:cds;Parent=Msa0852620-mRNA-1 |
| chr5_4 | three_prime_UTR | 43774599 | 43775068 | 43774599 | ID=Msa0852620-mRNA-1:three_prime_utr;Parent=Msa0852620-mRNA-1 |
| Gene Sequence |
| Protein sequence |
