Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1377140 | XP_003597047.1 | 98.734 | 158 | 2 | 0 | 1 | 158 | 1 | 158 | 6.65e-109 | 317 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1377140 | sp|O81898|DEAL2_ARATH | 68.354 | 158 | 50 | 0 | 1 | 158 | 1 | 158 | 2.27e-77 | 230 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1377140 | G7IKM8 | 98.734 | 158 | 2 | 0 | 1 | 158 | 1 | 158 | 3.18e-109 | 317 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0005390 | Msa1377140 | 0.813672 | 2.274019e-51 | -8.615850e-47 |
| Msa0006840 | Msa1377140 | 0.815932 | 7.174235e-52 | -8.615850e-47 |
| Msa0026250 | Msa1377140 | 0.820186 | 7.832908e-53 | -8.615850e-47 |
| Msa0030070 | Msa1377140 | 0.815824 | 7.585536e-52 | -8.615850e-47 |
| Msa0037660 | Msa1377140 | 0.814103 | 1.826890e-51 | -8.615850e-47 |
| Msa0038150 | Msa1377140 | -0.806974 | 6.337608e-50 | -8.615850e-47 |
| Msa0044440 | Msa1377140 | 0.800940 | 1.138360e-48 | -8.615850e-47 |
| Msa0045620 | Msa1377140 | 0.831186 | 1.925631e-55 | -8.615850e-47 |
| Msa0050530 | Msa1377140 | 0.831112 | 2.008108e-55 | -8.615850e-47 |
| Msa0053850 | Msa1377140 | 0.811146 | 8.102255e-51 | -8.615850e-47 |
| Msa0063190 | Msa1377140 | 0.810244 | 1.269416e-50 | -8.615850e-47 |
| Msa0086250 | Msa1377140 | 0.805381 | 1.372276e-49 | -8.615850e-47 |
| Msa0089540 | Msa1377140 | 0.826453 | 2.690318e-54 | -8.615850e-47 |
| Msa0099690 | Msa1377140 | 0.818146 | 2.281890e-52 | -8.615850e-47 |
| Msa0100600 | Msa1377140 | 0.812821 | 3.495783e-51 | -8.615850e-47 |
| Msa0100890 | Msa1377140 | 0.823419 | 1.399384e-53 | -8.615850e-47 |
| Msa0116620 | Msa1377140 | 0.818717 | 1.694497e-52 | -8.615850e-47 |
| Msa0116710 | Msa1377140 | 0.817103 | 3.922629e-52 | -8.615850e-47 |
| Msa1349850 | Msa1377140 | -0.800920 | 1.148950e-48 | -8.615850e-47 |
| Msa1355540 | Msa1377140 | 0.802064 | 6.697681e-49 | -8.615850e-47 |
| Msa1356450 | Msa1377140 | 0.852636 | 4.053287e-61 | -8.615850e-47 |
| Msa1362590 | Msa1377140 | 0.813257 | 2.805391e-51 | -8.615850e-47 |
| Msa1368170 | Msa1377140 | 0.820983 | 5.141133e-53 | -8.615850e-47 |
| Msa1371270 | Msa1377140 | 0.871616 | 5.966513e-67 | -8.615850e-47 |
| Msa1371800 | Msa1377140 | 0.830982 | 2.160989e-55 | -8.615850e-47 |
| Msa1372030 | Msa1377140 | 0.841646 | 4.189468e-58 | -8.615850e-47 |
| Msa1376310 | Msa1377140 | 0.835216 | 1.908867e-56 | -8.615850e-47 |
| Msa1377140 | Msa1381800 | 0.830177 | 3.400562e-55 | -8.615850e-47 |
| Msa1377140 | Msa1385570 | 0.824637 | 7.247634e-54 | -8.615850e-47 |
| Msa1377140 | Msa1387100 | -0.814373 | 1.592245e-51 | -8.615850e-47 |
| Msa1377140 | Msa1420830 | 0.822482 | 2.313215e-53 | -8.615850e-47 |
| Msa1377140 | Msa1427600 | -0.803911 | 2.781076e-49 | -8.615850e-47 |
| Msa1377140 | Msa1430460 | -0.828885 | 7.011352e-55 | -8.615850e-47 |
| Msa1377140 | Msa1453030 | 0.999405 | 4.668655e-309 | -8.615850e-47 |
| Msa0605520 | Msa1377140 | 0.839355 | 1.665387e-57 | -8.615850e-47 |
| Msa0612880 | Msa1377140 | -0.821040 | 4.986427e-53 | -8.615850e-47 |
| Msa0616230 | Msa1377140 | 0.827485 | 1.524717e-54 | -8.615850e-47 |
| Msa0623310 | Msa1377140 | 0.829103 | 6.206978e-55 | -8.615850e-47 |
| Msa0626980 | Msa1377140 | 0.803682 | 3.102033e-49 | -8.615850e-47 |
| Msa0627360 | Msa1377140 | 0.802555 | 5.307384e-49 | -8.615850e-47 |
| Msa0655710 | Msa1377140 | 0.833735 | 4.494897e-56 | -8.615850e-47 |
| Msa0657210 | Msa1377140 | 0.804171 | 2.454774e-49 | -8.615850e-47 |
| Msa0660260 | Msa1377140 | 0.836010 | 1.201921e-56 | -8.615850e-47 |
| Msa0673940 | Msa1377140 | 0.830970 | 2.175756e-55 | -8.615850e-47 |
| Msa0685610 | Msa1377140 | 0.830608 | 2.668661e-55 | -8.615850e-47 |
| Msa0688620 | Msa1377140 | 0.830999 | 2.140017e-55 | -8.615850e-47 |
| Msa0699560 | Msa1377140 | 0.826037 | 3.380266e-54 | -8.615850e-47 |
| Msa0701250 | Msa1377140 | 0.813362 | 2.660581e-51 | -8.615850e-47 |
| Msa0706690 | Msa1377140 | 0.873241 | 1.712850e-67 | -8.615850e-47 |
| Msa0749190 | Msa1377140 | 0.831297 | 1.807711e-55 | -8.615850e-47 |
| Msa0750520 | Msa1377140 | 0.834236 | 3.368166e-56 | -8.615850e-47 |
| Msa0751720 | Msa1377140 | 0.833614 | 4.820279e-56 | -8.615850e-47 |
| Msa0755480 | Msa1377140 | -0.829655 | 4.558204e-55 | -8.615850e-47 |
| Msa0761830 | Msa1377140 | 0.807826 | 4.180376e-50 | -8.615850e-47 |
| Msa0827340 | Msa1377140 | -0.812467 | 4.178872e-51 | -8.615850e-47 |
| Msa0831820 | Msa1377140 | 0.824694 | 7.025107e-54 | -8.615850e-47 |
| Msa0125590 | Msa1377140 | 0.818490 | 1.908091e-52 | -8.615850e-47 |
| Msa0130360 | Msa1377140 | 0.831580 | 1.540267e-55 | -8.615850e-47 |
| Msa0132080 | Msa1377140 | -0.809746 | 1.624822e-50 | -8.615850e-47 |
| Msa0134830 | Msa1377140 | 0.808834 | 2.548949e-50 | -8.615850e-47 |
| Msa0135230 | Msa1377140 | 0.832745 | 7.930473e-56 | -8.615850e-47 |
| Msa0145850 | Msa1377140 | 0.819442 | 1.159192e-52 | -8.615850e-47 |
| Msa0148310 | Msa1377140 | 0.842762 | 2.120648e-58 | -8.615850e-47 |
| Msa0152190 | Msa1377140 | -0.808406 | 3.146497e-50 | -8.615850e-47 |
| Msa0173380 | Msa1377140 | 0.834488 | 2.911488e-56 | -8.615850e-47 |
| Msa0192830 | Msa1377140 | 0.825498 | 4.535625e-54 | -8.615850e-47 |
| Msa0206370 | Msa1377140 | 0.803625 | 3.188708e-49 | -8.615850e-47 |
| Msa0219840 | Msa1377140 | 0.881687 | 1.951482e-70 | -8.615850e-47 |
| Msa0221180 | Msa1377140 | 0.836182 | 1.086934e-56 | -8.615850e-47 |
| Msa0223040 | Msa1377140 | 0.802719 | 4.909703e-49 | -8.615850e-47 |
| Msa1227760 | Msa1377140 | 0.807595 | 4.680227e-50 | -8.615850e-47 |
| Msa1231440 | Msa1377140 | 0.802389 | 5.742444e-49 | -8.615850e-47 |
| Msa1231490 | Msa1377140 | 0.804755 | 1.855032e-49 | -8.615850e-47 |
| Msa1267930 | Msa1377140 | 0.813402 | 2.606779e-51 | -8.615850e-47 |
| Msa1273320 | Msa1377140 | 0.802801 | 4.721835e-49 | -8.615850e-47 |
| Msa1278000 | Msa1377140 | 0.803519 | 3.354132e-49 | -8.615850e-47 |
| Msa1278030 | Msa1377140 | 0.817142 | 3.843607e-52 | -8.615850e-47 |
| Msa1290090 | Msa1377140 | -0.810246 | 1.267878e-50 | -8.615850e-47 |
| Msa1308860 | Msa1377140 | 0.806484 | 8.044971e-50 | -8.615850e-47 |
| Msa1343460 | Msa1377140 | 0.876423 | 1.413127e-68 | -8.615850e-47 |
| Msa0372100 | Msa1377140 | 0.829145 | 6.061808e-55 | -8.615850e-47 |
| Msa0388250 | Msa1377140 | 0.800346 | 1.504895e-48 | -8.615850e-47 |
| Msa0416210 | Msa1377140 | 0.800593 | 1.339876e-48 | -8.615850e-47 |
| Msa0418100 | Msa1377140 | 0.806761 | 7.032033e-50 | -8.615850e-47 |
| Msa0427820 | Msa1377140 | 0.821863 | 3.220074e-53 | -8.615850e-47 |
| Msa0464160 | Msa1377140 | 0.803863 | 2.845567e-49 | -8.615850e-47 |
| Msa0467250 | Msa1377140 | 0.807927 | 3.979589e-50 | -8.615850e-47 |
| Msa0474060 | Msa1377140 | 0.812639 | 3.831316e-51 | -8.615850e-47 |
| Msa1026710 | Msa1377140 | 0.822123 | 2.803667e-53 | -8.615850e-47 |
| Msa1033420 | Msa1377140 | 0.809387 | 1.940643e-50 | -8.615850e-47 |
| Msa1038860 | Msa1377140 | 0.825001 | 5.947742e-54 | -8.615850e-47 |
| Msa1042300 | Msa1377140 | 0.820753 | 5.806288e-53 | -8.615850e-47 |
| Msa1057340 | Msa1377140 | -0.802504 | 5.437597e-49 | -8.615850e-47 |
| Msa1071410 | Msa1377140 | 0.834162 | 3.515876e-56 | -8.615850e-47 |
| Msa1073060 | Msa1377140 | 0.814644 | 1.386980e-51 | -8.615850e-47 |
| Msa0260980 | Msa1377140 | 0.813185 | 2.908266e-51 | -8.615850e-47 |
| Msa0262750 | Msa1377140 | 0.809592 | 1.753809e-50 | -8.615850e-47 |
| Msa0264710 | Msa1377140 | 0.802527 | 5.379040e-49 | -8.615850e-47 |
| Msa0276800 | Msa1377140 | -0.801919 | 7.173520e-49 | -8.615850e-47 |
| Msa0277320 | Msa1377140 | 0.806466 | 8.113235e-50 | -8.615850e-47 |
| Msa0291320 | Msa1377140 | 0.808876 | 2.497093e-50 | -8.615850e-47 |
| Msa0297200 | Msa1377140 | 0.934647 | 2.919922e-96 | -8.615850e-47 |
| Msa0300470 | Msa1377140 | 0.820454 | 6.800731e-53 | -8.615850e-47 |
| Msa0336430 | Msa1377140 | 0.846861 | 1.664891e-59 | -8.615850e-47 |
| Msa0336460 | Msa1377140 | 0.848706 | 5.166582e-60 | -8.615850e-47 |
| Msa0336520 | Msa1377140 | 0.854969 | 8.636961e-62 | -8.615850e-47 |
| Msa0337970 | Msa1377140 | 0.805965 | 1.034398e-49 | -8.615850e-47 |
| Msa1127200 | Msa1377140 | 0.818685 | 1.723113e-52 | -8.615850e-47 |
| Msa1154630 | Msa1377140 | 0.828959 | 6.725138e-55 | -8.615850e-47 |
| Msa1160780 | Msa1377140 | 0.811716 | 6.091074e-51 | -8.615850e-47 |
| Msa0498610 | Msa1377140 | 0.800533 | 1.378430e-48 | -8.615850e-47 |
| Msa0509630 | Msa1377140 | 0.819959 | 8.829755e-53 | -8.615850e-47 |
| Msa0513580 | Msa1377140 | -0.841297 | 5.175027e-58 | -8.615850e-47 |
| Msa0518680 | Msa1377140 | 0.810778 | 9.730157e-51 | -8.615850e-47 |
| Msa0530660 | Msa1377140 | 0.808534 | 2.954253e-50 | -8.615850e-47 |
| Msa0541740 | Msa1377140 | 0.818243 | 2.169587e-52 | -8.615850e-47 |
| Msa0541880 | Msa1377140 | 0.815220 | 1.033759e-51 | -8.615850e-47 |
| Msa0541940 | Msa1377140 | 0.807390 | 5.174435e-50 | -8.615850e-47 |
| Msa0557850 | Msa1377140 | 0.814395 | 1.574977e-51 | -8.615850e-47 |
| Msa0562360 | Msa1377140 | 0.816036 | 6.800297e-52 | -8.615850e-47 |
| Msa0564980 | Msa1377140 | 0.805437 | 1.335268e-49 | -8.615850e-47 |
| Msa0568460 | Msa1377140 | -0.803369 | 3.602801e-49 | -8.615850e-47 |
| Msa0571350 | Msa1377140 | 0.840712 | 7.369326e-58 | -8.615850e-47 |
| Msa0575950 | Msa1377140 | 0.800047 | 1.731143e-48 | -8.615850e-47 |
| Msa0587180 | Msa1377140 | 0.828473 | 8.815379e-55 | -8.615850e-47 |
| Msa0598470 | Msa1377140 | -0.802844 | 4.625232e-49 | -8.615850e-47 |
| Msa0847140 | Msa1377140 | 0.810541 | 1.095268e-50 | -8.615850e-47 |
| Msa0848670 | Msa1377140 | -0.804133 | 2.500890e-49 | -8.615850e-47 |
| Msa0856220 | Msa1377140 | 0.833129 | 6.369180e-56 | -8.615850e-47 |
| Msa0876630 | Msa1377140 | 0.822740 | 2.015552e-53 | -8.615850e-47 |
| Msa0921340 | Msa1377140 | 0.807810 | 4.214236e-50 | -8.615850e-47 |
| Msa0929900 | Msa1377140 | 0.813519 | 2.456392e-51 | -8.615850e-47 |
| Msa0970040 | Msa1377140 | 0.818338 | 2.064720e-52 | -8.615850e-47 |
| Msa0978980 | Msa1377140 | 0.843984 | 1.000934e-58 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1377140 | MtrunA17_Chr2g0323081 | 98.734 | 158 | 2 | 0 | 1 | 158 | 1 | 158 | 6.12e-113 | 317 |
| Msa1377140 | MtrunA17_Chr4g0023621 | 70.253 | 158 | 47 | 0 | 1 | 158 | 1 | 158 | 4.94e-80 | 234 |
| Msa1377140 | MtrunA17_Chr4g0049001 | 60.127 | 158 | 63 | 0 | 1 | 158 | 1 | 158 | 4.49e-71 | 211 |
| Msa1377140 | MtrunA17_Chr2g0280491 | 60.127 | 158 | 63 | 0 | 1 | 158 | 1 | 158 | 9.86e-62 | 188 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1377140 | AT4G21310.1 | 68.354 | 158 | 50 | 0 | 1 | 158 | 1 | 158 | 2.30e-78 | 230 |
| Msa1377140 | AT2G32280.1 | 62.025 | 158 | 60 | 0 | 1 | 158 | 1 | 158 | 1.43e-71 | 213 |
| Msa1377140 | AT2G32280.2 | 62.025 | 158 | 60 | 0 | 1 | 158 | 1 | 158 | 1.43e-71 | 213 |
| Msa1377140 | AT4G21310.2 | 65.000 | 120 | 42 | 0 | 39 | 158 | 1 | 120 | 2.12e-54 | 168 |
| Msa1377140 | AT1G11500.1 | 41.212 | 165 | 90 | 1 | 1 | 158 | 1 | 165 | 5.10e-36 | 123 |
| Msa1377140 | AT1G11500.3 | 41.212 | 165 | 90 | 1 | 1 | 158 | 6 | 170 | 6.81e-36 | 123 |
| Msa1377140 | AT1G11500.2 | 43.860 | 114 | 64 | 0 | 45 | 158 | 24 | 137 | 1.96e-27 | 100 |
| Msa1377140 | AT1G05291.1 | 38.776 | 147 | 83 | 3 | 12 | 155 | 23 | 165 | 1.49e-23 | 92.0 |
Find 60 sgRNAs with CRISPR-Local
Find 180 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATTTACTCTACTTGTACTA+TGG | 0.146899 | tig0019874:+39457 | Msa1377140:three_prime_UTR |
| ATTTAGTAAAGCAACAAATT+TGG | 0.256307 | tig0019874:-39420 | None:intergenic |
| AGTCATAAGGCCTTCATGTT+TGG | 0.331948 | tig0019874:+38699 | Msa1377140:CDS |
| CTTTCATTGGACAATGACTT+TGG | 0.342392 | tig0019874:-39600 | None:intergenic |
| GATGTCACAGCTGGGATTCT+TGG | 0.346927 | tig0019874:+38329 | Msa1377140:CDS |
| ACCGCAGCCACCTAGCAAAT+TGG | 0.354925 | tig0019874:-38763 | None:intergenic |
| GTAGAAAGATCTATAATCTA+TGG | 0.358121 | tig0019874:-39634 | None:intergenic |
| GCCATTGAGAGTTGCCTATT+GGG | 0.372087 | tig0019874:-38822 | None:intergenic |
| GGCCATTGAGAGTTGCCTAT+TGG | 0.393490 | tig0019874:-38823 | None:intergenic |
| ATGTCTCTTGATTGTTATCA+TGG | 0.396765 | tig0019874:+38307 | Msa1377140:CDS |
| GGTAATCTAAAATCTTTCAT+TGG | 0.398016 | tig0019874:-39613 | None:intergenic |
| GGATTGAGCATGTTGGTGAT+AGG | 0.405472 | tig0019874:+39191 | Msa1377140:CDS |
| GAAATTAATTCTCTCAGAAA+TGG | 0.412103 | tig0019874:+38262 | Msa1377140:exon |
| TTCCTTAGTCACTAATTAAG+AGG | 0.431827 | tig0019874:-39339 | None:intergenic |
| GTTGTTGATCAGGATTGTTT+TGG | 0.434468 | tig0019874:+39163 | Msa1377140:intron |
| ATTTACTCTACTTGTACTAT+GGG | 0.442797 | tig0019874:+39458 | Msa1377140:three_prime_UTR |
| TACACATGTCAGTGGATTAG+TGG | 0.447914 | tig0019874:-39527 | None:intergenic |
| GACCATCACTTTCTATCCAT+TGG | 0.452040 | tig0019874:+39257 | Msa1377140:CDS |
| CACAAAAGCAAGAGCAGAAG+TGG | 0.467268 | tig0019874:-39378 | None:intergenic |
| GCCAATTTGCTAGGTGGCTG+CGG | 0.471857 | tig0019874:+38762 | Msa1377140:CDS |
| ACCCAATAGGCAACTCTCAA+TGG | 0.473987 | tig0019874:+38821 | Msa1377140:CDS |
| TGCCTCTTAATTAGTGACTA+AGG | 0.478388 | tig0019874:+39337 | Msa1377140:exon |
| GACTAAGGAAACACATAGAA+TGG | 0.481433 | tig0019874:+39352 | Msa1377140:three_prime_UTR |
| TTCAAAAGTCTTCACCCAAT+AGG | 0.481487 | tig0019874:+38808 | Msa1377140:CDS |
| GTTATCATGGATGTCACAGC+TGG | 0.486047 | tig0019874:+38320 | Msa1377140:CDS |
| TCAGAAATGGCTAGAGAAGT+TGG | 0.488463 | tig0019874:+38275 | Msa1377140:exon |
| TTGGTAAAGAAAAGCATACT+TGG | 0.490894 | tig0019874:+38233 | Msa1377140:five_prime_UTR |
| TCTCTTTCTTAGCTAGCACT+TGG | 0.498790 | tig0019874:+38214 | Msa1377140:five_prime_UTR |
| AGTAGAGTAAATAAATGTCT+TGG | 0.506117 | tig0019874:-39447 | None:intergenic |
| AGGTTAAACACTTGAGATTG+TGG | 0.506672 | tig0019874:+38655 | Msa1377140:intron |
| ATCACTTTCTATCCATTGGT+GGG | 0.512449 | tig0019874:+39261 | Msa1377140:CDS |
| AACATGAAGGCCTTATGACT+TGG | 0.519268 | tig0019874:-38696 | None:intergenic |
| CATGTTATAGCCAATTTGCT+AGG | 0.526723 | tig0019874:+38753 | Msa1377140:CDS |
| GTGTAGAGATCCAAGTCATA+AGG | 0.530738 | tig0019874:+38686 | Msa1377140:CDS |
| AAGAAACTAAATTAGAATTG+TGG | 0.537544 | tig0019874:-39561 | None:intergenic |
| GATTGAGCATGTTGGTGATA+GGG | 0.548783 | tig0019874:+39192 | Msa1377140:CDS |
| ATGTCAGTGGATTAGTGGAT+AGG | 0.552511 | tig0019874:-39522 | None:intergenic |
| CATCACTTTCTATCCATTGG+TGG | 0.556658 | tig0019874:+39260 | Msa1377140:CDS |
| TAAATTAAAATAGTCCATCA+TGG | 0.558416 | tig0019874:-39694 | None:intergenic |
| GGCTGTTGGATTGAGCATGT+TGG | 0.561637 | tig0019874:+39184 | Msa1377140:CDS |
| AAAACAAACAACAGATCAAG+TGG | 0.563378 | tig0019874:+39218 | Msa1377140:CDS |
| AATATATATCAAAACAATCG+TGG | 0.565043 | tig0019874:-38168 | None:intergenic |
| CTAGCAAATTGGCTATAACA+TGG | 0.567612 | tig0019874:-38752 | None:intergenic |
| AGTCACTAATTAAGAGGCAG+TGG | 0.571955 | tig0019874:-39333 | None:intergenic |
| TATATTACCATGTTAAAATG+AGG | 0.574693 | tig0019874:-38848 | None:intergenic |
| AAAACACAAAATCCCACCAA+TGG | 0.578066 | tig0019874:-39273 | None:intergenic |
| ATATATATCAAAACAATCGT+GGG | 0.587676 | tig0019874:-38167 | None:intergenic |
| TAGCAAATTGGCTATAACAT+GGG | 0.592154 | tig0019874:-38751 | None:intergenic |
| AGCTGAAATTGCTCAAAACA+AGG | 0.596775 | tig0019874:+38358 | Msa1377140:CDS |
| TTACCATGTTAAAATGAGGA+TGG | 0.599472 | tig0019874:-38844 | None:intergenic |
| TGCAGCTAATCCAAACATGA+AGG | 0.600785 | tig0019874:-38709 | None:intergenic |
| AACAGATCAAGTGGTACTTG+TGG | 0.611029 | tig0019874:+39227 | Msa1377140:CDS |
| GTTATAGCCAATTTGCTAGG+TGG | 0.649884 | tig0019874:+38756 | Msa1377140:CDS |
| TTTACTCTACTTGTACTATG+GGG | 0.650853 | tig0019874:+39459 | Msa1377140:three_prime_UTR |
| TTATCATGGATGTCACAGCT+GGG | 0.651085 | tig0019874:+38321 | Msa1377140:CDS |
| AACTAAATTAGAATTGTGGT+AGG | 0.658381 | tig0019874:-39557 | None:intergenic |
| GCACACACTACACATGTCAG+TGG | 0.658680 | tig0019874:-39535 | None:intergenic |
| AAGAAACACAGAATAGACCA+TGG | 0.662268 | tig0019874:-39298 | None:intergenic |
| CACCAATGGATAGAAAGTGA+TGG | 0.663881 | tig0019874:-39259 | None:intergenic |
| TAAGGAAACACATAGAATGG+AGG | 0.696438 | tig0019874:+39355 | Msa1377140:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATTTTATTTTACAAAATC+AGG | + | tig0019874:38635-38654 | Msa1377140:intron | 10.0% |
| !! | TTTGATAAACATTTAAAAAT+GGG | - | tig0019874:39498-39517 | None:intergenic | 10.0% |
| !! | ATTTGATAAACATTTAAAAA+TGG | - | tig0019874:39499-39518 | None:intergenic | 10.0% |
| !!! | TTATTTTATTTTACAAAATC+AGG | + | tig0019874:38635-38654 | Msa1377140:intron | 10.0% |
| !! | TTTGATAAACATTTAAAAAT+GGG | - | tig0019874:39498-39517 | None:intergenic | 10.0% |
| !! | ATTTGATAAACATTTAAAAA+TGG | - | tig0019874:39499-39518 | None:intergenic | 10.0% |
| !! | AAAATTAATGTACATTATCA+TGG | - | tig0019874:38559-38578 | None:intergenic | 15.0% |
| !!! | ATTTTATTTTAATACCATGA+TGG | + | tig0019874:39680-39699 | Msa1377140:three_prime_UTR | 15.0% |
| !! | AAAATTAATGTACATTATCA+TGG | - | tig0019874:38559-38578 | None:intergenic | 15.0% |
| !!! | ATTTTATTTTAATACCATGA+TGG | + | tig0019874:39680-39699 | Msa1377140:three_prime_UTR | 15.0% |
| !! | ATATATATCAAAACAATCGT+GGG | - | tig0019874:38170-38189 | None:intergenic | 20.0% |
| !! | AATATATATCAAAACAATCG+TGG | - | tig0019874:38171-38190 | None:intergenic | 20.0% |
| !!! | GTTTTATAGAATTAGAAACA+TGG | - | tig0019874:38403-38422 | None:intergenic | 20.0% |
| !! | TATATTACCATGTTAAAATG+AGG | - | tig0019874:38851-38870 | None:intergenic | 20.0% |
| !!! | AAATTCAGTGTTTTAAAAAC+CGG | - | tig0019874:39067-39086 | None:intergenic | 20.0% |
| !! | ATTTAGTAAAGCAACAAATT+TGG | - | tig0019874:39423-39442 | None:intergenic | 20.0% |
| !! | AAGAAACTAAATTAGAATTG+TGG | - | tig0019874:39564-39583 | None:intergenic | 20.0% |
| !! | ATATATATCAAAACAATCGT+GGG | - | tig0019874:38170-38189 | None:intergenic | 20.0% |
| !! | AATATATATCAAAACAATCG+TGG | - | tig0019874:38171-38190 | None:intergenic | 20.0% |
| !!! | GTTTTATAGAATTAGAAACA+TGG | - | tig0019874:38403-38422 | None:intergenic | 20.0% |
| !! | TATATTACCATGTTAAAATG+AGG | - | tig0019874:38851-38870 | None:intergenic | 20.0% |
| !!! | AAATTCAGTGTTTTAAAAAC+CGG | - | tig0019874:39067-39086 | None:intergenic | 20.0% |
| !! | ATTTAGTAAAGCAACAAATT+TGG | - | tig0019874:39423-39442 | None:intergenic | 20.0% |
| !! | AAGAAACTAAATTAGAATTG+TGG | - | tig0019874:39564-39583 | None:intergenic | 20.0% |
| ! | GAAATTAATTCTCTCAGAAA+TGG | + | tig0019874:38262-38281 | Msa1377140:exon | 25.0% |
| ! | TCAATCACAGTACAATTATT+AGG | - | tig0019874:38517-38536 | None:intergenic | 25.0% |
| ! | CAACAACGTAATTAAAACAA+TGG | - | tig0019874:39150-39169 | None:intergenic | 25.0% |
| !!! | TTTTAATTACGTTGTTGATC+AGG | + | tig0019874:39153-39172 | Msa1377140:intron | 25.0% |
| ! | AGTAGAGTAAATAAATGTCT+TGG | - | tig0019874:39450-39469 | None:intergenic | 25.0% |
| ! | TATTTACTCTACTTGTACTA+TGG | + | tig0019874:39457-39476 | Msa1377140:three_prime_UTR | 25.0% |
| ! | ATTTACTCTACTTGTACTAT+GGG | + | tig0019874:39458-39477 | Msa1377140:three_prime_UTR | 25.0% |
| ! | AACTAAATTAGAATTGTGGT+AGG | - | tig0019874:39560-39579 | None:intergenic | 25.0% |
| !! | GGTAATCTAAAATCTTTCAT+TGG | - | tig0019874:39616-39635 | None:intergenic | 25.0% |
| ! | GTAGAAAGATCTATAATCTA+TGG | - | tig0019874:39637-39656 | None:intergenic | 25.0% |
| ! | GAAATTAATTCTCTCAGAAA+TGG | + | tig0019874:38262-38281 | Msa1377140:exon | 25.0% |
| ! | TCAATCACAGTACAATTATT+AGG | - | tig0019874:38517-38536 | None:intergenic | 25.0% |
| ! | CAACAACGTAATTAAAACAA+TGG | - | tig0019874:39150-39169 | None:intergenic | 25.0% |
| !!! | TTTTAATTACGTTGTTGATC+AGG | + | tig0019874:39153-39172 | Msa1377140:intron | 25.0% |
| ! | AGTAGAGTAAATAAATGTCT+TGG | - | tig0019874:39450-39469 | None:intergenic | 25.0% |
| ! | TATTTACTCTACTTGTACTA+TGG | + | tig0019874:39457-39476 | Msa1377140:three_prime_UTR | 25.0% |
| ! | ATTTACTCTACTTGTACTAT+GGG | + | tig0019874:39458-39477 | Msa1377140:three_prime_UTR | 25.0% |
| ! | AACTAAATTAGAATTGTGGT+AGG | - | tig0019874:39560-39579 | None:intergenic | 25.0% |
| !! | GGTAATCTAAAATCTTTCAT+TGG | - | tig0019874:39616-39635 | None:intergenic | 25.0% |
| ! | GTAGAAAGATCTATAATCTA+TGG | - | tig0019874:39637-39656 | None:intergenic | 25.0% |
| ! | TTGGTAAAGAAAAGCATACT+TGG | + | tig0019874:38233-38252 | Msa1377140:five_prime_UTR | 30.0% |
| ATGTCTCTTGATTGTTATCA+TGG | + | tig0019874:38307-38326 | Msa1377140:CDS | 30.0% | |
| TAGCAAATTGGCTATAACAT+GGG | - | tig0019874:38754-38773 | None:intergenic | 30.0% | |
| TTACCATGTTAAAATGAGGA+TGG | - | tig0019874:38847-38866 | None:intergenic | 30.0% | |
| GAAAACAAGTAGAGGAATTA+GGG | - | tig0019874:38875-38894 | None:intergenic | 30.0% | |
| TTCAACTGCTTACAAAACTA+TGG | - | tig0019874:38991-39010 | None:intergenic | 30.0% | |
| !!! | TAGTTTTGTAAGCAGTTGAA+CGG | + | tig0019874:38991-39010 | Msa1377140:intron | 30.0% |
| ACCATGATAAAAAGTTCCAT+TGG | + | tig0019874:39028-39047 | Msa1377140:intron | 30.0% | |
| ! | ACCAATGGAACTTTTTATCA+TGG | - | tig0019874:39032-39051 | None:intergenic | 30.0% |
| CATTTATTAGTGAACTCTCA+TGG | - | tig0019874:39114-39133 | None:intergenic | 30.0% | |
| AAAACAAACAACAGATCAAG+TGG | + | tig0019874:39218-39237 | Msa1377140:CDS | 30.0% | |
| TTCCTTAGTCACTAATTAAG+AGG | - | tig0019874:39342-39361 | None:intergenic | 30.0% | |
| TTTACTCTACTTGTACTATG+GGG | + | tig0019874:39459-39478 | Msa1377140:three_prime_UTR | 30.0% | |
| ! | TTGGTAAAGAAAAGCATACT+TGG | + | tig0019874:38233-38252 | Msa1377140:five_prime_UTR | 30.0% |
| ATGTCTCTTGATTGTTATCA+TGG | + | tig0019874:38307-38326 | Msa1377140:CDS | 30.0% | |
| TAGCAAATTGGCTATAACAT+GGG | - | tig0019874:38754-38773 | None:intergenic | 30.0% | |
| TTACCATGTTAAAATGAGGA+TGG | - | tig0019874:38847-38866 | None:intergenic | 30.0% | |
| GAAAACAAGTAGAGGAATTA+GGG | - | tig0019874:38875-38894 | None:intergenic | 30.0% | |
| TTCAACTGCTTACAAAACTA+TGG | - | tig0019874:38991-39010 | None:intergenic | 30.0% | |
| !!! | TAGTTTTGTAAGCAGTTGAA+CGG | + | tig0019874:38991-39010 | Msa1377140:intron | 30.0% |
| ACCATGATAAAAAGTTCCAT+TGG | + | tig0019874:39028-39047 | Msa1377140:intron | 30.0% | |
| ! | ACCAATGGAACTTTTTATCA+TGG | - | tig0019874:39032-39051 | None:intergenic | 30.0% |
| CATTTATTAGTGAACTCTCA+TGG | - | tig0019874:39114-39133 | None:intergenic | 30.0% | |
| AAAACAAACAACAGATCAAG+TGG | + | tig0019874:39218-39237 | Msa1377140:CDS | 30.0% | |
| TTCCTTAGTCACTAATTAAG+AGG | - | tig0019874:39342-39361 | None:intergenic | 30.0% | |
| TTTACTCTACTTGTACTATG+GGG | + | tig0019874:39459-39478 | Msa1377140:three_prime_UTR | 30.0% | |
| AGCTGAAATTGCTCAAAACA+AGG | + | tig0019874:38358-38377 | Msa1377140:CDS | 35.0% | |
| AGGTTAAACACTTGAGATTG+TGG | + | tig0019874:38655-38674 | Msa1377140:intron | 35.0% | |
| CTAGCAAATTGGCTATAACA+TGG | - | tig0019874:38755-38774 | None:intergenic | 35.0% | |
| ! | CATGTTATAGCCAATTTGCT+AGG | + | tig0019874:38753-38772 | Msa1377140:CDS | 35.0% |
| TTCAAAAGTCTTCACCCAAT+AGG | + | tig0019874:38808-38827 | Msa1377140:CDS | 35.0% | |
| CGAAAACAAGTAGAGGAATT+AGG | - | tig0019874:38876-38895 | None:intergenic | 35.0% | |
| ACATTGTCGAAAACAAGTAG+AGG | - | tig0019874:38883-38902 | None:intergenic | 35.0% | |
| ! | TGTCTAGGGTTTGGTTATTT+AGG | + | tig0019874:38957-38976 | Msa1377140:intron | 35.0% |
| !! | CATTGGTTCAATATTCAGTC+CGG | + | tig0019874:39045-39064 | Msa1377140:intron | 35.0% |
| ! | GTTGTTGATCAGGATTGTTT+TGG | + | tig0019874:39163-39182 | Msa1377140:intron | 35.0% |
| ATCACTTTCTATCCATTGGT+GGG | + | tig0019874:39261-39280 | Msa1377140:CDS | 35.0% | |
| AAAACACAAAATCCCACCAA+TGG | - | tig0019874:39276-39295 | None:intergenic | 35.0% | |
| AAGAAACACAGAATAGACCA+TGG | - | tig0019874:39301-39320 | None:intergenic | 35.0% | |
| TGCCTCTTAATTAGTGACTA+AGG | + | tig0019874:39337-39356 | Msa1377140:exon | 35.0% | |
| GACTAAGGAAACACATAGAA+TGG | + | tig0019874:39352-39371 | Msa1377140:three_prime_UTR | 35.0% | |
| TAAGGAAACACATAGAATGG+AGG | + | tig0019874:39355-39374 | Msa1377140:three_prime_UTR | 35.0% | |
| !!! | GCTTTTGTGCTTTAGGAATT+TGG | + | tig0019874:39392-39411 | Msa1377140:three_prime_UTR | 35.0% |
| CTTTCATTGGACAATGACTT+TGG | - | tig0019874:39603-39622 | None:intergenic | 35.0% | |
| AGCTGAAATTGCTCAAAACA+AGG | + | tig0019874:38358-38377 | Msa1377140:CDS | 35.0% | |
| AGGTTAAACACTTGAGATTG+TGG | + | tig0019874:38655-38674 | Msa1377140:intron | 35.0% | |
| CTAGCAAATTGGCTATAACA+TGG | - | tig0019874:38755-38774 | None:intergenic | 35.0% | |
| ! | CATGTTATAGCCAATTTGCT+AGG | + | tig0019874:38753-38772 | Msa1377140:CDS | 35.0% |
| TTCAAAAGTCTTCACCCAAT+AGG | + | tig0019874:38808-38827 | Msa1377140:CDS | 35.0% | |
| CGAAAACAAGTAGAGGAATT+AGG | - | tig0019874:38876-38895 | None:intergenic | 35.0% | |
| ACATTGTCGAAAACAAGTAG+AGG | - | tig0019874:38883-38902 | None:intergenic | 35.0% | |
| ! | TGTCTAGGGTTTGGTTATTT+AGG | + | tig0019874:38957-38976 | Msa1377140:intron | 35.0% |
| !! | CATTGGTTCAATATTCAGTC+CGG | + | tig0019874:39045-39064 | Msa1377140:intron | 35.0% |
| ! | GTTGTTGATCAGGATTGTTT+TGG | + | tig0019874:39163-39182 | Msa1377140:intron | 35.0% |
| ATCACTTTCTATCCATTGGT+GGG | + | tig0019874:39261-39280 | Msa1377140:CDS | 35.0% | |
| AAAACACAAAATCCCACCAA+TGG | - | tig0019874:39276-39295 | None:intergenic | 35.0% | |
| AAGAAACACAGAATAGACCA+TGG | - | tig0019874:39301-39320 | None:intergenic | 35.0% | |
| TGCCTCTTAATTAGTGACTA+AGG | + | tig0019874:39337-39356 | Msa1377140:exon | 35.0% | |
| GACTAAGGAAACACATAGAA+TGG | + | tig0019874:39352-39371 | Msa1377140:three_prime_UTR | 35.0% | |
| TAAGGAAACACATAGAATGG+AGG | + | tig0019874:39355-39374 | Msa1377140:three_prime_UTR | 35.0% | |
| !!! | GCTTTTGTGCTTTAGGAATT+TGG | + | tig0019874:39392-39411 | Msa1377140:three_prime_UTR | 35.0% |
| CTTTCATTGGACAATGACTT+TGG | - | tig0019874:39603-39622 | None:intergenic | 35.0% | |
| TCTCTTTCTTAGCTAGCACT+TGG | + | tig0019874:38214-38233 | Msa1377140:five_prime_UTR | 40.0% | |
| TCAGAAATGGCTAGAGAAGT+TGG | + | tig0019874:38275-38294 | Msa1377140:exon | 40.0% | |
| TTATCATGGATGTCACAGCT+GGG | + | tig0019874:38321-38340 | Msa1377140:CDS | 40.0% | |
| GTGTAGAGATCCAAGTCATA+AGG | + | tig0019874:38686-38705 | Msa1377140:CDS | 40.0% | |
| ! | AACATGAAGGCCTTATGACT+TGG | - | tig0019874:38699-38718 | None:intergenic | 40.0% |
| AGTCATAAGGCCTTCATGTT+TGG | + | tig0019874:38699-38718 | Msa1377140:CDS | 40.0% | |
| TGCAGCTAATCCAAACATGA+AGG | - | tig0019874:38712-38731 | None:intergenic | 40.0% | |
| !! | GTTATAGCCAATTTGCTAGG+TGG | + | tig0019874:38756-38775 | Msa1377140:CDS | 40.0% |
| !! | TGGCCATCCTCATTTTAACA+TGG | + | tig0019874:38841-38860 | Msa1377140:CDS | 40.0% |
| AGCAGTTGAACGGTTTAAAG+AGG | + | tig0019874:39001-39020 | Msa1377140:intron | 40.0% | |
| CGGACTGAATATTGAACCAA+TGG | - | tig0019874:39047-39066 | None:intergenic | 40.0% | |
| !!! | ATCAGGATTGTTTTGGCTGT+TGG | + | tig0019874:39170-39189 | Msa1377140:intron | 40.0% |
| !! | GATTGAGCATGTTGGTGATA+GGG | + | tig0019874:39192-39211 | Msa1377140:CDS | 40.0% |
| AACAGATCAAGTGGTACTTG+TGG | + | tig0019874:39227-39246 | Msa1377140:CDS | 40.0% | |
| GACCATCACTTTCTATCCAT+TGG | + | tig0019874:39257-39276 | Msa1377140:CDS | 40.0% | |
| CACCAATGGATAGAAAGTGA+TGG | - | tig0019874:39262-39281 | None:intergenic | 40.0% | |
| CATCACTTTCTATCCATTGG+TGG | + | tig0019874:39260-39279 | Msa1377140:CDS | 40.0% | |
| ! | GGGATTTTGTGTTTTGTCCA+TGG | + | tig0019874:39281-39300 | Msa1377140:CDS | 40.0% |
| AGTCACTAATTAAGAGGCAG+TGG | - | tig0019874:39336-39355 | None:intergenic | 40.0% | |
| !! | TGCTCTTGCTTTTGTGCTTT+AGG | + | tig0019874:39385-39404 | Msa1377140:three_prime_UTR | 40.0% |
| !! | ATGTCAGTGGATTAGTGGAT+AGG | - | tig0019874:39525-39544 | None:intergenic | 40.0% |
| !! | TACACATGTCAGTGGATTAG+TGG | - | tig0019874:39530-39549 | None:intergenic | 40.0% |
| TCTCTTTCTTAGCTAGCACT+TGG | + | tig0019874:38214-38233 | Msa1377140:five_prime_UTR | 40.0% | |
| TCAGAAATGGCTAGAGAAGT+TGG | + | tig0019874:38275-38294 | Msa1377140:exon | 40.0% | |
| TTATCATGGATGTCACAGCT+GGG | + | tig0019874:38321-38340 | Msa1377140:CDS | 40.0% | |
| GTGTAGAGATCCAAGTCATA+AGG | + | tig0019874:38686-38705 | Msa1377140:CDS | 40.0% | |
| ! | AACATGAAGGCCTTATGACT+TGG | - | tig0019874:38699-38718 | None:intergenic | 40.0% |
| AGTCATAAGGCCTTCATGTT+TGG | + | tig0019874:38699-38718 | Msa1377140:CDS | 40.0% | |
| TGCAGCTAATCCAAACATGA+AGG | - | tig0019874:38712-38731 | None:intergenic | 40.0% | |
| !! | GTTATAGCCAATTTGCTAGG+TGG | + | tig0019874:38756-38775 | Msa1377140:CDS | 40.0% |
| !! | TGGCCATCCTCATTTTAACA+TGG | + | tig0019874:38841-38860 | Msa1377140:CDS | 40.0% |
| AGCAGTTGAACGGTTTAAAG+AGG | + | tig0019874:39001-39020 | Msa1377140:intron | 40.0% | |
| CGGACTGAATATTGAACCAA+TGG | - | tig0019874:39047-39066 | None:intergenic | 40.0% | |
| !!! | ATCAGGATTGTTTTGGCTGT+TGG | + | tig0019874:39170-39189 | Msa1377140:intron | 40.0% |
| !! | GATTGAGCATGTTGGTGATA+GGG | + | tig0019874:39192-39211 | Msa1377140:CDS | 40.0% |
| AACAGATCAAGTGGTACTTG+TGG | + | tig0019874:39227-39246 | Msa1377140:CDS | 40.0% | |
| GACCATCACTTTCTATCCAT+TGG | + | tig0019874:39257-39276 | Msa1377140:CDS | 40.0% | |
| CACCAATGGATAGAAAGTGA+TGG | - | tig0019874:39262-39281 | None:intergenic | 40.0% | |
| CATCACTTTCTATCCATTGG+TGG | + | tig0019874:39260-39279 | Msa1377140:CDS | 40.0% | |
| ! | GGGATTTTGTGTTTTGTCCA+TGG | + | tig0019874:39281-39300 | Msa1377140:CDS | 40.0% |
| AGTCACTAATTAAGAGGCAG+TGG | - | tig0019874:39336-39355 | None:intergenic | 40.0% | |
| !! | TGCTCTTGCTTTTGTGCTTT+AGG | + | tig0019874:39385-39404 | Msa1377140:three_prime_UTR | 40.0% |
| !! | ATGTCAGTGGATTAGTGGAT+AGG | - | tig0019874:39525-39544 | None:intergenic | 40.0% |
| !! | TACACATGTCAGTGGATTAG+TGG | - | tig0019874:39530-39549 | None:intergenic | 40.0% |
| GTTATCATGGATGTCACAGC+TGG | + | tig0019874:38320-38339 | Msa1377140:CDS | 45.0% | |
| ACCCAATAGGCAACTCTCAA+TGG | + | tig0019874:38821-38840 | Msa1377140:CDS | 45.0% | |
| GCCATTGAGAGTTGCCTATT+GGG | - | tig0019874:38825-38844 | None:intergenic | 45.0% | |
| ACTATGAAACCGCACTGTCT+AGG | + | tig0019874:38942-38961 | Msa1377140:intron | 45.0% | |
| CTATGAAACCGCACTGTCTA+GGG | + | tig0019874:38943-38962 | Msa1377140:intron | 45.0% | |
| TAACCAAACCCTAGACAGTG+CGG | - | tig0019874:38954-38973 | None:intergenic | 45.0% | |
| !! | GGATTGAGCATGTTGGTGAT+AGG | + | tig0019874:39191-39210 | Msa1377140:CDS | 45.0% |
| CACAAAAGCAAGAGCAGAAG+TGG | - | tig0019874:39381-39400 | None:intergenic | 45.0% | |
| GTTATCATGGATGTCACAGC+TGG | + | tig0019874:38320-38339 | Msa1377140:CDS | 45.0% | |
| ACCCAATAGGCAACTCTCAA+TGG | + | tig0019874:38821-38840 | Msa1377140:CDS | 45.0% | |
| GCCATTGAGAGTTGCCTATT+GGG | - | tig0019874:38825-38844 | None:intergenic | 45.0% | |
| ACTATGAAACCGCACTGTCT+AGG | + | tig0019874:38942-38961 | Msa1377140:intron | 45.0% | |
| CTATGAAACCGCACTGTCTA+GGG | + | tig0019874:38943-38962 | Msa1377140:intron | 45.0% | |
| TAACCAAACCCTAGACAGTG+CGG | - | tig0019874:38954-38973 | None:intergenic | 45.0% | |
| !! | GGATTGAGCATGTTGGTGAT+AGG | + | tig0019874:39191-39210 | Msa1377140:CDS | 45.0% |
| CACAAAAGCAAGAGCAGAAG+TGG | - | tig0019874:39381-39400 | None:intergenic | 45.0% | |
| GATGTCACAGCTGGGATTCT+TGG | + | tig0019874:38329-38348 | Msa1377140:CDS | 50.0% | |
| GGCCATTGAGAGTTGCCTAT+TGG | - | tig0019874:38826-38845 | None:intergenic | 50.0% | |
| ! | AAACCGCACTGTCTAGGGTT+TGG | + | tig0019874:38948-38967 | Msa1377140:intron | 50.0% |
| GGCTGTTGGATTGAGCATGT+TGG | + | tig0019874:39184-39203 | Msa1377140:CDS | 50.0% | |
| GCACACACTACACATGTCAG+TGG | - | tig0019874:39538-39557 | None:intergenic | 50.0% | |
| GATGTCACAGCTGGGATTCT+TGG | + | tig0019874:38329-38348 | Msa1377140:CDS | 50.0% | |
| GGCCATTGAGAGTTGCCTAT+TGG | - | tig0019874:38826-38845 | None:intergenic | 50.0% | |
| ! | AAACCGCACTGTCTAGGGTT+TGG | + | tig0019874:38948-38967 | Msa1377140:intron | 50.0% |
| GGCTGTTGGATTGAGCATGT+TGG | + | tig0019874:39184-39203 | Msa1377140:CDS | 50.0% | |
| GCACACACTACACATGTCAG+TGG | - | tig0019874:39538-39557 | None:intergenic | 50.0% | |
| !! | GCCAATTTGCTAGGTGGCTG+CGG | + | tig0019874:38762-38781 | Msa1377140:CDS | 55.0% |
| ACCGCAGCCACCTAGCAAAT+TGG | - | tig0019874:38766-38785 | None:intergenic | 55.0% | |
| !! | GCCAATTTGCTAGGTGGCTG+CGG | + | tig0019874:38762-38781 | Msa1377140:CDS | 55.0% |
| ACCGCAGCCACCTAGCAAAT+TGG | - | tig0019874:38766-38785 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0019874 | gene | 38119 | 39710 | 38119 | ID=Msa1377140;Name=Msa1377140 |
| tig0019874 | mRNA | 38119 | 39710 | 38119 | ID=Msa1377140-mRNA-1;Parent=Msa1377140;Name=Msa1377140-mRNA-1;_AED=0.04;_eAED=0.04;_QI=162|1|1|1|1|1|3|364|158 |
| tig0019874 | exon | 38119 | 38379 | 38119 | ID=Msa1377140-mRNA-1:exon:5493;Parent=Msa1377140-mRNA-1 |
| tig0019874 | exon | 38657 | 38862 | 38657 | ID=Msa1377140-mRNA-1:exon:5494;Parent=Msa1377140-mRNA-1 |
| tig0019874 | exon | 39175 | 39710 | 39175 | ID=Msa1377140-mRNA-1:exon:5495;Parent=Msa1377140-mRNA-1 |
| tig0019874 | five_prime_UTR | 38119 | 38280 | 38119 | ID=Msa1377140-mRNA-1:five_prime_utr;Parent=Msa1377140-mRNA-1 |
| tig0019874 | CDS | 38281 | 38379 | 38281 | ID=Msa1377140-mRNA-1:cds;Parent=Msa1377140-mRNA-1 |
| tig0019874 | CDS | 38657 | 38862 | 38657 | ID=Msa1377140-mRNA-1:cds;Parent=Msa1377140-mRNA-1 |
| tig0019874 | CDS | 39175 | 39346 | 39175 | ID=Msa1377140-mRNA-1:cds;Parent=Msa1377140-mRNA-1 |
| tig0019874 | three_prime_UTR | 39347 | 39710 | 39347 | ID=Msa1377140-mRNA-1:three_prime_utr;Parent=Msa1377140-mRNA-1 |
| Gene Sequence |
| Protein sequence |
