Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0169970 | XP_003590791.1 | 93.995 | 383 | 23 | 0 | 1 | 383 | 1 | 383 | 0.0 | 738 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0169970 | sp|Q84WL6|WDL3_ARATH | 49.701 | 334 | 128 | 8 | 7 | 333 | 2 | 302 | 1.05e-81 | 256 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0169970 | G7I3Y8 | 93.995 | 383 | 23 | 0 | 1 | 383 | 1 | 383 | 0.0 | 738 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0006840 | Msa0169970 | 0.811678 | 6.209008e-51 | -8.615850e-47 |
| Msa0015570 | Msa0169970 | 0.807872 | 4.088194e-50 | -8.615850e-47 |
| Msa0030070 | Msa0169970 | 0.807086 | 6.000362e-50 | -8.615850e-47 |
| Msa0078130 | Msa0169970 | 0.804498 | 2.098903e-49 | -8.615850e-47 |
| Msa0091350 | Msa0169970 | 0.804183 | 2.441587e-49 | -8.615850e-47 |
| Msa0100600 | Msa0169970 | 0.804700 | 1.904979e-49 | -8.615850e-47 |
| Msa0100890 | Msa0169970 | 0.801324 | 9.500304e-49 | -8.615850e-47 |
| Msa0125590 | Msa0169970 | 0.822294 | 2.558838e-53 | -8.615850e-47 |
| Msa0127340 | Msa0169970 | 0.802244 | 6.151976e-49 | -8.615850e-47 |
| Msa0156090 | Msa0169970 | 0.806466 | 8.116677e-50 | -8.615850e-47 |
| Msa0169970 | Msa0170070 | 0.817362 | 3.430358e-52 | -8.615850e-47 |
| Msa0169970 | Msa0204970 | 0.809025 | 2.319738e-50 | -8.615850e-47 |
| Msa0169970 | Msa0433630 | 0.800510 | 1.393461e-48 | -8.615850e-47 |
| Msa0169970 | Msa0527850 | 0.813371 | 2.647918e-51 | -8.615850e-47 |
| Msa0169970 | Msa0541740 | 0.809824 | 1.563439e-50 | -8.615850e-47 |
| Msa0169970 | Msa0549900 | 0.815615 | 8.442529e-52 | -8.615850e-47 |
| Msa0169970 | Msa0572830 | 0.821230 | 4.509839e-53 | -8.615850e-47 |
| Msa0169970 | Msa0582460 | 0.808317 | 3.286745e-50 | -8.615850e-47 |
| Msa0169970 | Msa0586200 | 0.811571 | 6.550617e-51 | -8.615850e-47 |
| Msa0169970 | Msa0625620 | 0.808884 | 2.486741e-50 | -8.615850e-47 |
| Msa0169970 | Msa0640800 | 0.804989 | 1.657180e-49 | -8.615850e-47 |
| Msa0169970 | Msa0657210 | 0.813573 | 2.390998e-51 | -8.615850e-47 |
| Msa0169970 | Msa0701250 | 0.807197 | 5.686158e-50 | -8.615850e-47 |
| Msa0169970 | Msa0707260 | 0.810650 | 1.037072e-50 | -8.615850e-47 |
| Msa0169970 | Msa0756330 | 0.801690 | 7.992520e-49 | -8.615850e-47 |
| Msa0169970 | Msa0861440 | 0.818666 | 1.739989e-52 | -8.615850e-47 |
| Msa0169970 | Msa0900090 | 0.803219 | 3.869376e-49 | -8.615850e-47 |
| Msa0169970 | Msa1078860 | 0.813706 | 2.234646e-51 | -8.615850e-47 |
| Msa0169970 | Msa1169690 | 0.811462 | 6.918993e-51 | -8.615850e-47 |
| Msa0169970 | Msa1183900 | 0.804711 | 1.894405e-49 | -8.615850e-47 |
| Msa0169970 | Msa1188340 | 0.813365 | 2.655342e-51 | -8.615850e-47 |
| Msa0169970 | Msa1191000 | 0.801391 | 9.204638e-49 | -8.615850e-47 |
| Msa0169970 | Msa1206040 | 0.821268 | 4.419571e-53 | -8.615850e-47 |
| Msa0169970 | Msa1262570 | 0.801954 | 7.055004e-49 | -8.615850e-47 |
| Msa0169970 | Msa1267930 | 0.806315 | 8.730891e-50 | -8.615850e-47 |
| Msa0169970 | Msa1282300 | 0.801660 | 8.109554e-49 | -8.615850e-47 |
| Msa0169970 | Msa1294280 | 0.805807 | 1.116731e-49 | -8.615850e-47 |
| Msa0169970 | Msa1297070 | 0.817173 | 3.783077e-52 | -8.615850e-47 |
| Msa0169970 | Msa1328870 | 0.821646 | 3.614800e-53 | -8.615850e-47 |
| Msa0169970 | Msa1387500 | 0.808223 | 3.442595e-50 | -8.615850e-47 |
| Msa0169970 | Msa1389820 | 0.812079 | 5.077797e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0169970 | MtrunA17_Chr1g0187121 | 93.995 | 383 | 23 | 0 | 1 | 383 | 1 | 383 | 0.0 | 738 |
| Msa0169970 | MtrunA17_Chr1g0190551 | 38.994 | 318 | 157 | 8 | 1 | 313 | 8 | 293 | 2.24e-46 | 162 |
| Msa0169970 | MtrunA17_Chr7g0274281 | 58.993 | 139 | 53 | 1 | 179 | 317 | 178 | 312 | 1.45e-33 | 128 |
| Msa0169970 | MtrunA17_Chr7g0267791 | 51.748 | 143 | 62 | 4 | 185 | 326 | 213 | 349 | 6.37e-31 | 122 |
| Msa0169970 | MtrunA17_Chr1g0149361 | 60.870 | 92 | 36 | 0 | 217 | 308 | 229 | 320 | 1.59e-29 | 119 |
| Msa0169970 | MtrunA17_Chr3g0137761 | 60.870 | 92 | 36 | 0 | 217 | 308 | 212 | 303 | 6.02e-29 | 117 |
| Msa0169970 | MtrunA17_Chr1g0176611 | 61.290 | 93 | 35 | 1 | 213 | 305 | 231 | 322 | 1.87e-27 | 112 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0169970 | AT3G23090.1 | 49.701 | 334 | 128 | 8 | 7 | 333 | 2 | 302 | 1.07e-82 | 256 |
| Msa0169970 | AT3G23090.4 | 49.701 | 334 | 128 | 8 | 7 | 333 | 38 | 338 | 3.37e-82 | 256 |
| Msa0169970 | AT3G23090.5 | 49.401 | 334 | 129 | 8 | 7 | 333 | 3 | 303 | 6.33e-82 | 254 |
| Msa0169970 | AT3G23090.2 | 49.112 | 338 | 128 | 9 | 7 | 333 | 2 | 306 | 2.53e-81 | 253 |
| Msa0169970 | AT3G23090.3 | 49.112 | 338 | 128 | 9 | 7 | 333 | 38 | 342 | 5.69e-81 | 253 |
| Msa0169970 | AT1G54460.1 | 49.064 | 267 | 103 | 10 | 63 | 326 | 40 | 276 | 5.50e-61 | 200 |
| Msa0169970 | AT3G04630.3 | 60.993 | 141 | 52 | 2 | 168 | 305 | 82 | 222 | 2.03e-50 | 171 |
| Msa0169970 | AT3G04630.1 | 60.993 | 141 | 52 | 2 | 168 | 305 | 78 | 218 | 2.75e-50 | 171 |
| Msa0169970 | AT3G04630.2 | 62.222 | 135 | 49 | 1 | 173 | 305 | 83 | 217 | 4.28e-50 | 170 |
| Msa0169970 | AT5G28646.2 | 53.548 | 155 | 63 | 3 | 162 | 314 | 40 | 187 | 3.19e-41 | 144 |
| Msa0169970 | AT5G28646.1 | 53.548 | 155 | 63 | 3 | 162 | 314 | 40 | 187 | 3.19e-41 | 144 |
| Msa0169970 | AT5G28646.3 | 57.895 | 133 | 50 | 2 | 184 | 314 | 55 | 183 | 9.71e-41 | 143 |
| Msa0169970 | AT2G35880.3 | 57.252 | 131 | 53 | 2 | 178 | 308 | 210 | 337 | 5.22e-33 | 128 |
| Msa0169970 | AT2G35880.2 | 57.252 | 131 | 53 | 2 | 178 | 308 | 210 | 337 | 5.22e-33 | 128 |
| Msa0169970 | AT2G35880.1 | 57.252 | 131 | 53 | 2 | 178 | 308 | 210 | 337 | 5.22e-33 | 128 |
| Msa0169970 | AT4G32330.1 | 53.279 | 122 | 57 | 0 | 189 | 310 | 180 | 301 | 2.79e-30 | 120 |
| Msa0169970 | AT4G32330.4 | 53.279 | 122 | 57 | 0 | 189 | 310 | 180 | 301 | 2.79e-30 | 120 |
| Msa0169970 | AT4G32330.3 | 53.279 | 122 | 57 | 0 | 189 | 310 | 180 | 301 | 2.79e-30 | 120 |
| Msa0169970 | AT4G32330.2 | 60.638 | 94 | 37 | 0 | 217 | 310 | 207 | 300 | 5.74e-30 | 120 |
| Msa0169970 | AT2G25480.1 | 60.870 | 92 | 36 | 0 | 217 | 308 | 183 | 274 | 3.93e-27 | 111 |
| Msa0169970 | AT2G25480.2 | 60.870 | 92 | 36 | 0 | 217 | 308 | 184 | 275 | 3.94e-27 | 111 |
| Msa0169970 | AT1G70950.1 | 50.617 | 81 | 40 | 0 | 218 | 298 | 330 | 410 | 4.09e-16 | 80.1 |
Find 99 sgRNAs with CRISPR-Local
Find 198 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTGCAATAGTTTGTTATTA+AGG | 0.161776 | 1_4:-53517225 | Msa0169970:three_prime_UTR |
| GTCACATTGTTTGAAGTTAT+TGG | 0.185251 | 1_4:-53517289 | Msa0169970:three_prime_UTR |
| ATCTCAAGTTATTTGTAAAA+AGG | 0.213581 | 1_4:-53517370 | Msa0169970:three_prime_UTR |
| TGTCTGTCTGCCTCAACTTC+AGG | 0.219535 | 1_4:-53517312 | Msa0169970:three_prime_UTR |
| GATTCATGTTCAGTTGCTTC+TGG | 0.221500 | 1_4:-53518818 | Msa0169970:CDS |
| CTCTTTCGCCGGCCCAGCTT+TGG | 0.232565 | 1_4:+53517796 | None:intergenic |
| AGAAAGTGAATATAAGTTAA+AGG | 0.240855 | 1_4:+53517440 | None:intergenic |
| AAGACTCACATTTAGAGTTT+TGG | 0.241746 | 1_4:+53520528 | None:intergenic |
| TCAGAATGTTTCTTGTTATC+AGG | 0.279197 | 1_4:+53518848 | None:intergenic |
| ATCATAGAGAATCTTATTTC+AGG | 0.305823 | 1_4:+53517186 | None:intergenic |
| TTGCAATAGTTTGTTATTAA+GGG | 0.313028 | 1_4:-53517224 | Msa0169970:three_prime_UTR |
| TCTGAAGGGGTCAAAGAAAA+AGG | 0.313853 | 1_4:-53517751 | Msa0169970:CDS |
| CTTTCAGTTGCTAGGGAAAA+TGG | 0.316077 | 1_4:+53519152 | None:intergenic |
| AATCTCATTGAAGACTTTAC+TGG | 0.317150 | 1_4:+53517545 | None:intergenic |
| ACTCCTCCTCAACTGTTTGA+TGG | 0.328938 | 1_4:+53518296 | None:intergenic |
| TTGCTTCTGCTCCAAGCTTT+CGG | 0.336692 | 1_4:-53518624 | Msa0169970:CDS |
| AATGGAATTTCACACGATTC+AGG | 0.357091 | 1_4:-53519455 | Msa0169970:CDS |
| GTCTGTCTGCCTCAACTTCA+GGG | 0.369482 | 1_4:-53517311 | Msa0169970:three_prime_UTR |
| CATATTGTGATTATCAGTTC+CGG | 0.379451 | 1_4:+53519424 | None:intergenic |
| CTAGGAGTTTGTGAATTACT+AGG | 0.385033 | 1_4:+53520617 | None:intergenic |
| AACGGTTTCCTTGGAACTAA+AGG | 0.390764 | 1_4:+53518875 | None:intergenic |
| AATAATGATGTTCAGTGAAC+AGG | 0.391655 | 1_4:-53517264 | Msa0169970:three_prime_UTR |
| ATTCATGTTCAGTTGCTTCT+GGG | 0.401381 | 1_4:-53518817 | Msa0169970:intron |
| AGTGTGCTTGGTCTCGTTGT+CGG | 0.402552 | 1_4:+53517630 | None:intergenic |
| TTGTTATCTTCTTCAAAAGT+AGG | 0.404232 | 1_4:+53519107 | None:intergenic |
| ATCACTCAAGTTACAGTTGT+TGG | 0.411012 | 1_4:+53517693 | None:intergenic |
| TTGAGAACACCCTCAAAATC+TGG | 0.411487 | 1_4:+53519251 | None:intergenic |
| TTCGATTAATTCAGTGTGCT+TGG | 0.427655 | 1_4:+53517618 | None:intergenic |
| GAAGATAACAAGGGCGGTAA+TGG | 0.429080 | 1_4:-53519095 | Msa0169970:CDS |
| TAATACGCTTAAACAGAATC+AGG | 0.429313 | 1_4:-53519036 | Msa0169970:intron |
| TGATGAGTTTGTGAATTACT+AGG | 0.440371 | 1_4:+53520599 | None:intergenic |
| TGAAATAAGATTCTCTATGA+TGG | 0.444432 | 1_4:-53517184 | Msa0169970:three_prime_UTR |
| AAGGAAATTCTATTGCTCAT+AGG | 0.446691 | 1_4:-53517351 | Msa0169970:three_prime_UTR |
| TCAGGTTTCAACGGTTTCCT+TGG | 0.446814 | 1_4:+53518866 | None:intergenic |
| TCTTTGTTATATAGTGCAAT+GGG | 0.450750 | 1_4:-53519536 | Msa0169970:intron |
| CTGTGAGGTCGTTCAAGTCC+AGG | 0.451888 | 1_4:-53518654 | Msa0169970:CDS |
| AGAAGTTTCTGTTAAGGCCT+CGG | 0.454828 | 1_4:-53519312 | Msa0169970:CDS |
| TTCTTTGTTATATAGTGCAA+TGG | 0.455351 | 1_4:-53519537 | Msa0169970:intron |
| CACGATTCAGGTCATGAAAC+CGG | 0.458303 | 1_4:-53519443 | Msa0169970:CDS |
| ACGTGCAAAATCTCCAAAGC+TGG | 0.463249 | 1_4:-53517809 | Msa0169970:CDS |
| TACAACAGAAGTTTCTGTTA+AGG | 0.465193 | 1_4:-53519318 | Msa0169970:CDS |
| CGTTCAGTCGACCGAAAGCT+TGG | 0.469154 | 1_4:+53518613 | None:intergenic |
| CCATGAGGGGCCTCCACCTA+AGG | 0.469379 | 1_4:-53518238 | Msa0169970:CDS |
| ATTAATATGATCAAAGTGAA+TGG | 0.469665 | 1_4:-53517592 | Msa0169970:CDS |
| CAAAATCTCCAAAGCTGGGC+CGG | 0.476917 | 1_4:-53517804 | Msa0169970:CDS |
| TTCAGATATTTGTATCATCA+AGG | 0.486869 | 1_4:-53519504 | Msa0169970:CDS |
| ATCGATTAAGGAAGAGAAAG+AGG | 0.493171 | 1_4:-53518322 | Msa0169970:intron |
| ACCTTCTTCAAGTCAACCTT+AGG | 0.493715 | 1_4:+53518222 | None:intergenic |
| TGAAGTCTCCTTTAGTTCCA+AGG | 0.494501 | 1_4:-53518883 | Msa0169970:CDS |
| ATAGTTTGTTATTAAGGGAA+AGG | 0.495055 | 1_4:-53517219 | Msa0169970:three_prime_UTR |
| TGTTCCTAGCAACTTTCTGA+AGG | 0.500193 | 1_4:-53517478 | Msa0169970:three_prime_UTR |
| GAATAGACTACAACACGATC+TGG | 0.511764 | 1_4:+53519479 | None:intergenic |
| AGCAGAAGCAACAGTTGCCC+TGG | 0.512471 | 1_4:+53518636 | None:intergenic |
| TTCTTCAAGTCAACCTTAGG+TGG | 0.518571 | 1_4:+53518225 | None:intergenic |
| GTTCGAAACCGCACAAAACA+AGG | 0.521164 | 1_4:-53519220 | Msa0169970:CDS |
| GGCCCCTCATGGTAAAAGCT+TGG | 0.526227 | 1_4:+53518249 | None:intergenic |
| AGCACGCCTTTCAGTTGCTA+GGG | 0.527177 | 1_4:+53519145 | None:intergenic |
| TTCAAGTCAACCTTAGGTGG+AGG | 0.528551 | 1_4:+53518228 | None:intergenic |
| GAAAATGGTCGCGGAACTGT+AGG | 0.532713 | 1_4:+53519167 | None:intergenic |
| CACCGCTGTTGCTCTTTCGC+CGG | 0.539391 | 1_4:+53517785 | None:intergenic |
| GTTCCTAGCAACTTTCTGAA+GGG | 0.542946 | 1_4:-53517477 | Msa0169970:three_prime_UTR |
| TAGCACGCCTTTCAGTTGCT+AGG | 0.543009 | 1_4:+53519144 | None:intergenic |
| TTCTTGTTATCAGGTTTCAA+CGG | 0.554280 | 1_4:+53518857 | None:intergenic |
| AGAGGAAAAGCAACAAGCAA+TGG | 0.560439 | 1_4:-53518472 | Msa0169970:CDS |
| GGTGTAGTTAATTCATCTGA+AGG | 0.562023 | 1_4:-53517766 | Msa0169970:CDS |
| TGAATCGTGTGAAATTCCAT+TGG | 0.563092 | 1_4:+53519457 | None:intergenic |
| TGAACGCGCACAAAGAAGAA+AGG | 0.565933 | 1_4:-53518596 | Msa0169970:CDS |
| CACAAAGGAATACGAGGTGA+AGG | 0.571994 | 1_4:-53519345 | Msa0169970:CDS |
| CGTGCAAAATCTCCAAAGCT+GGG | 0.573361 | 1_4:-53517808 | Msa0169970:CDS |
| CCTTAGGTGGAGGCCCCTCA+TGG | 0.574648 | 1_4:+53518238 | None:intergenic |
| CGTGTTGTAGTCTATTCCAA+TGG | 0.575756 | 1_4:-53519473 | Msa0169970:CDS |
| ACTACCGACAGTGGCTTGGA+TGG | 0.577481 | 1_4:-53517667 | Msa0169970:CDS |
| GTGTAGTTAATTCATCTGAA+GGG | 0.579266 | 1_4:-53517765 | Msa0169970:CDS |
| TCATGGTAAAAGCTTGGCAT+AGG | 0.579542 | 1_4:+53518255 | None:intergenic |
| ACCTAAGGTTGACTTGAAGA+AGG | 0.581399 | 1_4:-53518223 | Msa0169970:intron |
| ATCAAAGTGAATGGACAAGC+GGG | 0.581724 | 1_4:-53517583 | Msa0169970:CDS |
| TGTGACTACCGACAGTGGCT+TGG | 0.584826 | 1_4:-53517671 | Msa0169970:CDS |
| AAGCCATCAAACAGTTGAGG+AGG | 0.591790 | 1_4:-53518299 | Msa0169970:CDS |
| ACAATGTGACCCTGAAGTTG+AGG | 0.592428 | 1_4:+53517302 | None:intergenic |
| TGTGAGGTCGTTCAAGTCCA+GGG | 0.595446 | 1_4:-53518653 | Msa0169970:CDS |
| AGGAAGCCATCAAACAGTTG+AGG | 0.603449 | 1_4:-53518302 | Msa0169970:CDS |
| TCAAAATGAAGCAAGGAGCA+AGG | 0.605637 | 1_4:-53518436 | Msa0169970:intron |
| TTCGAAACCGCACAAAACAA+GGG | 0.608167 | 1_4:-53519219 | Msa0169970:CDS |
| AGAAGAATCAAAATGAAGCA+AGG | 0.613159 | 1_4:-53518443 | Msa0169970:CDS |
| ACACCCTTCAGAAAGTTGCT+AGG | 0.621102 | 1_4:+53517474 | None:intergenic |
| GTTGCTAGGGAAAATGGTCG+CGG | 0.629133 | 1_4:+53519158 | None:intergenic |
| GAGACCATCCAAGCCACTGT+CGG | 0.630660 | 1_4:+53517663 | None:intergenic |
| GGCCGGCGAAAGAGCAACAG+CGG | 0.632330 | 1_4:-53517787 | Msa0169970:CDS |
| TGTAGTTAATTCATCTGAAG+GGG | 0.636048 | 1_4:-53517764 | Msa0169970:CDS |
| TCGAAACCGCACAAAACAAG+GGG | 0.655229 | 1_4:-53519218 | Msa0169970:CDS |
| GATCAAAGTGAATGGACAAG+CGG | 0.657804 | 1_4:-53517584 | Msa0169970:CDS |
| TTTGAAGAAGATAACAAGGG+CGG | 0.669853 | 1_4:-53519101 | Msa0169970:CDS |
| AGAGAGCACAAAGGAATACG+AGG | 0.687992 | 1_4:-53519351 | Msa0169970:CDS |
| GTAGGCTTGACAGTATCTCG+TGG | 0.692488 | 1_4:+53519185 | None:intergenic |
| ACGCGCACAAAGAAGAAAGG+AGG | 0.694653 | 1_4:-53518593 | Msa0169970:intron |
| TAGTTCAGAAGAGAGCACAA+AGG | 0.711655 | 1_4:-53519360 | Msa0169970:CDS |
| AAAGAACTGCAACTTCTGTG+AGG | 0.712590 | 1_4:-53518669 | Msa0169970:intron |
| AGTGATGTGACTACCGACAG+TGG | 0.716119 | 1_4:-53517676 | Msa0169970:CDS |
| TAACAAGAAACATTCTGACG+AGG | 0.718258 | 1_4:-53518843 | Msa0169970:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAATAAATTAACCATAAA+CGG | + | chr1_4:53518881-53518900 | None:intergenic | 10.0% |
| !!! | TTTATTGTTTTTTGAACAAA+TGG | - | chr1_4:53517454-53517473 | Msa0169970:three_prime_UTR | 15.0% |
| !! | ATAAATAAATTCATACTAAG+TGG | + | chr1_4:53517614-53517633 | None:intergenic | 15.0% |
| !! | ATTAAATTTATATACACGTT+TGG | - | chr1_4:53517993-53518012 | Msa0169970:intron | 15.0% |
| !! | TTAAATTTATATACACGTTT+GGG | - | chr1_4:53517994-53518013 | Msa0169970:intron | 15.0% |
| !!! | ATAGTTTTATTCAAAATTAG+AGG | - | chr1_4:53519348-53519367 | Msa0169970:CDS | 15.0% |
| !!! | ACTATTTATTTTTCCTATAC+TGG | + | chr1_4:53517497-53517516 | None:intergenic | 20.0% |
| !! | AAAAGGAAAGTAATCAAATT+GGG | + | chr1_4:53517747-53517766 | None:intergenic | 20.0% |
| !!! | TAGTTTTTCTTAACTTAGTT+AGG | - | chr1_4:53517775-53517794 | Msa0169970:CDS | 20.0% |
| !!! | TAGGTTTTTTAATCAATCTT+TGG | - | chr1_4:53517888-53517907 | Msa0169970:intron | 20.0% |
| !! | TTGAAATAATCTTTCAGAAA+TGG | + | chr1_4:53518075-53518094 | None:intergenic | 20.0% |
| !! | AGAAAAACAAAATCTTACAT+AGG | + | chr1_4:53518189-53518208 | None:intergenic | 20.0% |
| !! | ATCTAACATAAAAAAAAGTG+AGG | - | chr1_4:53518553-53518572 | Msa0169970:intron | 20.0% |
| !! | AACTATAGCACAAATAAAAA+GGG | + | chr1_4:53519334-53519353 | None:intergenic | 20.0% |
| !! | AAACTATAGCACAAATAAAA+AGG | + | chr1_4:53519335-53519354 | None:intergenic | 20.0% |
| !! | CAAAATGACAATGTAATTTA+TGG | + | chr1_4:53519458-53519477 | None:intergenic | 20.0% |
| !! | AGATAAACAACTTAATTAAG+TGG | - | chr1_4:53519675-53519694 | Msa0169970:intron | 20.0% |
| !! | TAATTAAGTGGTTATCATAT+AGG | - | chr1_4:53519687-53519706 | Msa0169970:intron | 20.0% |
| !!! | TTTGACTTCATTTTATCTTT+TGG | + | chr1_4:53519738-53519757 | None:intergenic | 20.0% |
| !! | ATTAATATGATCAAAGTGAA+TGG | - | chr1_4:53520246-53520265 | Msa0169970:intron | 20.0% |
| !!! | ACTTCTAATTTATGAGTTTT+TGG | - | chr1_4:53520324-53520343 | Msa0169970:intron | 20.0% |
| !!! | CTTCTAATTTATGAGTTTTT+GGG | - | chr1_4:53520325-53520344 | Msa0169970:intron | 20.0% |
| !!! | TTCTAATTTATGAGTTTTTG+GGG | - | chr1_4:53520326-53520345 | Msa0169970:intron | 20.0% |
| !! | AGAAAGTGAATATAAGTTAA+AGG | + | chr1_4:53520401-53520420 | None:intergenic | 20.0% |
| !! | ATCTCAAGTTATTTGTAAAA+AGG | - | chr1_4:53520468-53520487 | Msa0169970:intron | 20.0% |
| !!! | TTGCAATAGTTTGTTATTAA+GGG | - | chr1_4:53520614-53520633 | Msa0169970:five_prime_UTR | 20.0% |
| !!! | TTTTGGATCTGGAATAATAA+TGG | + | chr1_4:53517296-53517315 | None:intergenic | 25.0% |
| ! | TTGATGCATGAAAATGTAAA+GGG | + | chr1_4:53517345-53517364 | None:intergenic | 25.0% |
| ! | TTTGATGCATGAAAATGTAA+AGG | + | chr1_4:53517346-53517365 | None:intergenic | 25.0% |
| ! | AACATATGTTAGATCTTAGA+AGG | + | chr1_4:53517385-53517404 | None:intergenic | 25.0% |
| !! | ATTGTTGATGTTTGTTAATC+AGG | - | chr1_4:53517416-53517435 | Msa0169970:three_prime_UTR | 25.0% |
| ! | ATAAATTCATACTAAGTGGT+TGG | + | chr1_4:53517610-53517629 | None:intergenic | 25.0% |
| ! | GAAAAGGAAAGTAATCAAAT+TGG | + | chr1_4:53517748-53517767 | None:intergenic | 25.0% |
| ! | GAAAAACTAAAACACAGAAA+AGG | + | chr1_4:53517764-53517783 | None:intergenic | 25.0% |
| ! | AGAATATTCTCTTATCTTCT+AGG | - | chr1_4:53517958-53517977 | Msa0169970:intron | 25.0% |
| ! | GAATATTCTCTTATCTTCTA+GGG | - | chr1_4:53517959-53517978 | Msa0169970:intron | 25.0% |
| !!! | TTTTATGAAATGGACTGTAT+AGG | + | chr1_4:53518106-53518125 | None:intergenic | 25.0% |
| !! | ACTCAAGTGATTTTATGAAA+TGG | + | chr1_4:53518116-53518135 | None:intergenic | 25.0% |
| ! | AATTAAAGAATGCTTCCAAA+AGG | + | chr1_4:53518143-53518162 | None:intergenic | 25.0% |
| !! | TTCTTTGTTATATAGTGCAA+TGG | - | chr1_4:53518301-53518320 | Msa0169970:CDS | 25.0% |
| !! | TCTTTGTTATATAGTGCAAT+GGG | - | chr1_4:53518302-53518321 | Msa0169970:CDS | 25.0% |
| ! | TTCAGATATTTGTATCATCA+AGG | - | chr1_4:53518334-53518353 | Msa0169970:intron | 25.0% |
| ! | TTGTTATCTTCTTCAAAAGT+AGG | + | chr1_4:53518734-53518753 | None:intergenic | 25.0% |
| !!! | TACTTTTGAAGAAGATAACA+AGG | - | chr1_4:53518733-53518752 | Msa0169970:intron | 25.0% |
| !!! | ACTTTTGAAGAAGATAACAA+GGG | - | chr1_4:53518734-53518753 | Msa0169970:intron | 25.0% |
| ! | TTATAAACCTTATAGTCGAA+GGG | - | chr1_4:53519051-53519070 | Msa0169970:CDS | 25.0% |
| !!! | TTAAGTAGCTTTGTTTCAAT+AGG | - | chr1_4:53519281-53519300 | Msa0169970:CDS | 25.0% |
| !!! | TAAGTAGCTTTGTTTCAATA+GGG | - | chr1_4:53519282-53519301 | Msa0169970:CDS | 25.0% |
| !! | TTAAGTTGTTTATCTCAACA+GGG | + | chr1_4:53519670-53519689 | None:intergenic | 25.0% |
| !! | ATTAAGTTGTTTATCTCAAC+AGG | + | chr1_4:53519671-53519690 | None:intergenic | 25.0% |
| ! | AATGACAAAGTTAACATGTA+TGG | - | chr1_4:53519991-53520010 | Msa0169970:intron | 25.0% |
| !!! | TCTAATTTATGAGTTTTTGG+GGG | - | chr1_4:53520327-53520346 | Msa0169970:intron | 25.0% |
| !!! | CTTGCAATAGTTTGTTATTA+AGG | - | chr1_4:53520613-53520632 | Msa0169970:five_prime_UTR | 25.0% |
| !!! | ATAGTTTGTTATTAAGGGAA+AGG | - | chr1_4:53520619-53520638 | Msa0169970:five_prime_UTR | 25.0% |
| !! | ATCATAGAGAATCTTATTTC+AGG | + | chr1_4:53520655-53520674 | None:intergenic | 25.0% |
| ! | TGAAATAAGATTCTCTATGA+TGG | - | chr1_4:53520654-53520673 | Msa0169970:five_prime_UTR | 25.0% |
| TGATGAGTTTGTGAATTACT+AGG | + | chr1_4:53517242-53517261 | None:intergenic | 30.0% | |
| !! | AAGACTCACATTTAGAGTTT+TGG | + | chr1_4:53517313-53517332 | None:intergenic | 30.0% |
| TTTGTTAATCAGGTTCAGTT+TGG | - | chr1_4:53517426-53517445 | Msa0169970:three_prime_UTR | 30.0% | |
| AACAATATGATTAACCGACA+AGG | + | chr1_4:53517668-53517687 | None:intergenic | 30.0% | |
| ! | CTTAGTTAGGTAGACAATTT+TGG | - | chr1_4:53517788-53517807 | Msa0169970:CDS | 30.0% |
| ! | GCTAACAACTTCAATACTTT+TGG | - | chr1_4:53517845-53517864 | Msa0169970:intron | 30.0% |
| AAAAAACCTAAGTAATGAGC+AGG | + | chr1_4:53517878-53517897 | None:intergenic | 30.0% | |
| ! | AGTTGCTTTCAACTAAAAAG+TGG | + | chr1_4:53517924-53517943 | None:intergenic | 30.0% |
| ! | ATCACTTGAGTAAAACCTTT+TGG | - | chr1_4:53518125-53518144 | Msa0169970:intron | 30.0% |
| CATATTGTGATTATCAGTTC+CGG | + | chr1_4:53518417-53518436 | None:intergenic | 30.0% | |
| TACAACAGAAGTTTCTGTTA+AGG | - | chr1_4:53518520-53518539 | Msa0169970:intron | 30.0% | |
| TAATACGCTTAAACAGAATC+AGG | - | chr1_4:53518802-53518821 | Msa0169970:intron | 30.0% | |
| AATAGATTAGACAATGAAGG+AGG | + | chr1_4:53518852-53518871 | None:intergenic | 30.0% | |
| AGCAATAGATTAGACAATGA+AGG | + | chr1_4:53518855-53518874 | None:intergenic | 30.0% | |
| ! | TTCTTGTTATCAGGTTTCAA+CGG | + | chr1_4:53518984-53519003 | None:intergenic | 30.0% |
| ! | TCAGAATGTTTCTTGTTATC+AGG | + | chr1_4:53518993-53519012 | None:intergenic | 30.0% |
| CTTATAAACCTTATAGTCGA+AGG | - | chr1_4:53519050-53519069 | Msa0169970:CDS | 30.0% | |
| AGAAGAATCAAAATGAAGCA+AGG | - | chr1_4:53519395-53519414 | Msa0169970:CDS | 30.0% | |
| AGAGATTTCTTCATTATCTC+AGG | - | chr1_4:53519430-53519449 | Msa0169970:CDS | 30.0% | |
| ACAAATAGAGTGAGAAAACT+AGG | + | chr1_4:53519494-53519513 | None:intergenic | 30.0% | |
| ! | CTCTATTTGTTCATCGATTA+AGG | - | chr1_4:53519504-53519523 | Msa0169970:CDS | 30.0% |
| TCGTACATGATACTGTTATA+AGG | + | chr1_4:53519853-53519872 | None:intergenic | 30.0% | |
| TTATAACAGTATCATGTACG+AGG | - | chr1_4:53519852-53519871 | Msa0169970:intron | 30.0% | |
| GTGTAGTTAATTCATCTGAA+GGG | - | chr1_4:53520073-53520092 | Msa0169970:intron | 30.0% | |
| TGTAGTTAATTCATCTGAAG+GGG | - | chr1_4:53520074-53520093 | Msa0169970:intron | 30.0% | |
| AATCTCATTGAAGACTTTAC+TGG | + | chr1_4:53520296-53520315 | None:intergenic | 30.0% | |
| AAGGAAATTCTATTGCTCAT+AGG | - | chr1_4:53520487-53520506 | Msa0169970:intron | 30.0% | |
| ! | GTCACATTGTTTGAAGTTAT+TGG | - | chr1_4:53520549-53520568 | Msa0169970:five_prime_UTR | 30.0% |
| AATAATGATGTTCAGTGAAC+AGG | - | chr1_4:53520574-53520593 | Msa0169970:five_prime_UTR | 30.0% | |
| CTAGGAGTTTGTGAATTACT+AGG | + | chr1_4:53517224-53517243 | None:intergenic | 35.0% | |
| !!! | CACATTTAGAGTTTTGGATC+TGG | + | chr1_4:53517307-53517326 | None:intergenic | 35.0% |
| TTGAACAAATGGTTCTTGCA+TGG | - | chr1_4:53517465-53517484 | Msa0169970:three_prime_UTR | 35.0% | |
| TCTAGTGTATGATACCTTGT+CGG | - | chr1_4:53517651-53517670 | Msa0169970:CDS | 35.0% | |
| GGAAAGTAATCAAATTGGGT+TGG | + | chr1_4:53517743-53517762 | None:intergenic | 35.0% | |
| ATTTGTCCTGCTCATTACTT+AGG | - | chr1_4:53517869-53517888 | Msa0169970:intron | 35.0% | |
| AACTAAAAAGTGGAACCATG+GGG | + | chr1_4:53517914-53517933 | None:intergenic | 35.0% | |
| CAACTAAAAAGTGGAACCAT+GGG | + | chr1_4:53517915-53517934 | None:intergenic | 35.0% | |
| TCAACTAAAAAGTGGAACCA+TGG | + | chr1_4:53517916-53517935 | None:intergenic | 35.0% | |
| !! | AATGGACTGTATAGGTTCTA+TGG | + | chr1_4:53518098-53518117 | None:intergenic | 35.0% |
| TGAATCGTGTGAAATTCCAT+TGG | + | chr1_4:53518384-53518403 | None:intergenic | 35.0% | |
| AATGGAATTTCACACGATTC+AGG | - | chr1_4:53518383-53518402 | Msa0169970:intron | 35.0% | |
| ! | TTTTATGTTAGATACGTCCG+AGG | + | chr1_4:53518546-53518565 | None:intergenic | 35.0% |
| ! | AAGTTGACACCAGATTTTGA+GGG | - | chr1_4:53518578-53518597 | Msa0169970:intron | 35.0% |
| TTTGAAGAAGATAACAAGGG+CGG | - | chr1_4:53518737-53518756 | Msa0169970:intron | 35.0% | |
| GGAGGAAGCAAATTCAAAAT+CGG | + | chr1_4:53518834-53518853 | None:intergenic | 35.0% | |
| ATCTATTGCTGAACCGTTTA+TGG | - | chr1_4:53518865-53518884 | Msa0169970:CDS | 35.0% | |
| TAACAAGAAACATTCTGACG+AGG | - | chr1_4:53518995-53519014 | Msa0169970:intron | 35.0% | |
| ATTCATGTTCAGTTGCTTCT+GGG | - | chr1_4:53519021-53519040 | Msa0169970:intron | 35.0% | |
| AGAAGTTGCAGTTCTTTACA+TGG | + | chr1_4:53519166-53519185 | None:intergenic | 35.0% | |
| ! | GGTTTTCTTCCCAAATTGAT+CGG | - | chr1_4:53519303-53519322 | Msa0169970:CDS | 35.0% |
| ATCGATTAAGGAAGAGAAAG+AGG | - | chr1_4:53519516-53519535 | Msa0169970:CDS | 35.0% | |
| ! | GACTTGAAGAAGGTATGTAA+TGG | - | chr1_4:53519625-53519644 | Msa0169970:intron | 35.0% |
| GGTGTAGTTAATTCATCTGA+AGG | - | chr1_4:53520072-53520091 | Msa0169970:intron | 35.0% | |
| ATCACTCAAGTTACAGTTGT+TGG | + | chr1_4:53520148-53520167 | None:intergenic | 35.0% | |
| TTCGATTAATTCAGTGTGCT+TGG | + | chr1_4:53520223-53520242 | None:intergenic | 35.0% | |
| !! | ATTTATGAGTTTTTGGGGGA+CGG | - | chr1_4:53520331-53520350 | Msa0169970:intron | 35.0% |
| ACAAATGGTTCTTGCATGGT+TGG | - | chr1_4:53517469-53517488 | Msa0169970:three_prime_UTR | 40.0% | |
| TTAATCAATCTTTGGCCCCA+TGG | - | chr1_4:53517896-53517915 | Msa0169970:intron | 40.0% | |
| CTTACATAGGCACGAATTCA+AGG | + | chr1_4:53518176-53518195 | None:intergenic | 40.0% | |
| GAATAGACTACAACACGATC+TGG | + | chr1_4:53518362-53518381 | None:intergenic | 40.0% | |
| CGTGTTGTAGTCTATTCCAA+TGG | - | chr1_4:53518365-53518384 | Msa0169970:intron | 40.0% | |
| ! | TAGTTCAGAAGAGAGCACAA+AGG | - | chr1_4:53518478-53518497 | Msa0169970:CDS | 40.0% |
| AGAAGTTTCTGTTAAGGCCT+CGG | - | chr1_4:53518526-53518545 | Msa0169970:intron | 40.0% | |
| ! | GAAGTTGACACCAGATTTTG+AGG | - | chr1_4:53518577-53518596 | Msa0169970:intron | 40.0% |
| TTGAGAACACCCTCAAAATC+TGG | + | chr1_4:53518590-53518609 | None:intergenic | 40.0% | |
| TTCGAAACCGCACAAAACAA+GGG | - | chr1_4:53518619-53518638 | Msa0169970:CDS | 40.0% | |
| !!! | TGATTACCCCTTGTTTTGTG+CGG | + | chr1_4:53518629-53518648 | None:intergenic | 40.0% |
| CTTTCAGTTGCTAGGGAAAA+TGG | + | chr1_4:53518689-53518708 | None:intergenic | 40.0% | |
| ! | CATTTTCCCTAGCAACTGAA+AGG | - | chr1_4:53518687-53518706 | Msa0169970:intron | 40.0% |
| TAAAGGAGACTTCAACTGCA+AGG | + | chr1_4:53518949-53518968 | None:intergenic | 40.0% | |
| ! | TGAAGTCTCCTTTAGTTCCA+AGG | - | chr1_4:53518955-53518974 | Msa0169970:intron | 40.0% |
| AACGGTTTCCTTGGAACTAA+AGG | + | chr1_4:53518966-53518985 | None:intergenic | 40.0% | |
| GATTCATGTTCAGTTGCTTC+TGG | - | chr1_4:53519020-53519039 | Msa0169970:intron | 40.0% | |
| TTTGACACCCTTCGACTATA+AGG | + | chr1_4:53519061-53519080 | None:intergenic | 40.0% | |
| CAGTTCTTTACATGGTCAAG+GGG | + | chr1_4:53519158-53519177 | None:intergenic | 40.0% | |
| GCAGTTCTTTACATGGTCAA+GGG | + | chr1_4:53519159-53519178 | None:intergenic | 40.0% | |
| TGCAGTTCTTTACATGGTCA+AGG | + | chr1_4:53519160-53519179 | None:intergenic | 40.0% | |
| AAAGAACTGCAACTTCTGTG+AGG | - | chr1_4:53519169-53519188 | Msa0169970:CDS | 40.0% | |
| AGAGGAAAAGCAACAAGCAA+TGG | - | chr1_4:53519366-53519385 | Msa0169970:CDS | 40.0% | |
| TCAAAATGAAGCAAGGAGCA+AGG | - | chr1_4:53519402-53519421 | Msa0169970:CDS | 40.0% | |
| TCATGGTAAAAGCTTGGCAT+AGG | + | chr1_4:53519586-53519605 | None:intergenic | 40.0% | |
| ! | TATGCCAAGCTTTTACCATG+AGG | - | chr1_4:53519585-53519604 | Msa0169970:intron | 40.0% |
| ! | ATGCCAAGCTTTTACCATGA+GGG | - | chr1_4:53519586-53519605 | Msa0169970:intron | 40.0% |
| TTCTTCAAGTCAACCTTAGG+TGG | + | chr1_4:53519616-53519635 | None:intergenic | 40.0% | |
| !! | ACCTAAGGTTGACTTGAAGA+AGG | - | chr1_4:53519615-53519634 | Msa0169970:intron | 40.0% |
| ACCTTCTTCAAGTCAACCTT+AGG | + | chr1_4:53519619-53519638 | None:intergenic | 40.0% | |
| ! | TTTGGAGATTTTGCACGTGT+GGG | + | chr1_4:53520027-53520046 | None:intergenic | 40.0% |
| TCTGAAGGGGTCAAAGAAAA+AGG | - | chr1_4:53520087-53520106 | Msa0169970:intron | 40.0% | |
| GATCAAAGTGAATGGACAAG+CGG | - | chr1_4:53520254-53520273 | Msa0169970:intron | 40.0% | |
| ATCAAAGTGAATGGACAAGC+GGG | - | chr1_4:53520255-53520274 | Msa0169970:intron | 40.0% | |
| TGTTCCTAGCAACTTTCTGA+AGG | - | chr1_4:53520360-53520379 | Msa0169970:intron | 40.0% | |
| GTTCCTAGCAACTTTCTGAA+GGG | - | chr1_4:53520361-53520380 | Msa0169970:intron | 40.0% | |
| TGCATGGTTGGATCCAGTAT+AGG | - | chr1_4:53517481-53517500 | Msa0169970:three_prime_UTR | 45.0% | |
| TATACACGTTTGGGCATGCT+TGG | - | chr1_4:53518003-53518022 | Msa0169970:intron | 45.0% | |
| CACGATTCAGGTCATGAAAC+CGG | - | chr1_4:53518395-53518414 | Msa0169970:intron | 45.0% | |
| ! | AGAGAGCACAAAGGAATACG+AGG | - | chr1_4:53518487-53518506 | Msa0169970:CDS | 45.0% |
| CACAAAGGAATACGAGGTGA+AGG | - | chr1_4:53518493-53518512 | Msa0169970:intron | 45.0% | |
| GTTCGAAACCGCACAAAACA+AGG | - | chr1_4:53518618-53518637 | Msa0169970:CDS | 45.0% | |
| TCGAAACCGCACAAAACAAG+GGG | - | chr1_4:53518620-53518639 | Msa0169970:CDS | 45.0% | |
| GAAGATAACAAGGGCGGTAA+TGG | - | chr1_4:53518743-53518762 | Msa0169970:intron | 45.0% | |
| TCAGGTTTCAACGGTTTCCT+TGG | + | chr1_4:53518975-53518994 | None:intergenic | 45.0% | |
| TTGCTTCTGCTCCAAGCTTT+CGG | - | chr1_4:53519214-53519233 | Msa0169970:CDS | 45.0% | |
| TGAACGCGCACAAAGAAGAA+AGG | - | chr1_4:53519242-53519261 | Msa0169970:CDS | 45.0% | |
| ! | AGGGATGCACCGATCAATTT+GGG | + | chr1_4:53519315-53519334 | None:intergenic | 45.0% |
| ! | AAGGGATGCACCGATCAATT+TGG | + | chr1_4:53519316-53519335 | None:intergenic | 45.0% |
| AGGAAGCCATCAAACAGTTG+AGG | - | chr1_4:53519536-53519555 | Msa0169970:intron | 45.0% | |
| AAGCCATCAAACAGTTGAGG+AGG | - | chr1_4:53519539-53519558 | Msa0169970:intron | 45.0% | |
| ACTCCTCCTCAACTGTTTGA+TGG | + | chr1_4:53519545-53519564 | None:intergenic | 45.0% | |
| ! | TGCCAAGCTTTTACCATGAG+GGG | - | chr1_4:53519587-53519606 | Msa0169970:intron | 45.0% |
| TTCAAGTCAACCTTAGGTGG+AGG | + | chr1_4:53519613-53519632 | None:intergenic | 45.0% | |
| !! | CTTTGGAGATTTTGCACGTG+TGG | + | chr1_4:53520028-53520047 | None:intergenic | 45.0% |
| ACGTGCAAAATCTCCAAAGC+TGG | - | chr1_4:53520029-53520048 | Msa0169970:intron | 45.0% | |
| CGTGCAAAATCTCCAAAGCT+GGG | - | chr1_4:53520030-53520049 | Msa0169970:intron | 45.0% | |
| AGGGGTCAAAGAAAAAGGAG+TGG | - | chr1_4:53520092-53520111 | Msa0169970:intron | 45.0% | |
| ACACCCTTCAGAAAGTTGCT+AGG | + | chr1_4:53520367-53520386 | None:intergenic | 45.0% | |
| ACAATGTGACCCTGAAGTTG+AGG | + | chr1_4:53520539-53520558 | None:intergenic | 45.0% | |
| GTAGGCTTGACAGTATCTCG+TGG | + | chr1_4:53518656-53518675 | None:intergenic | 50.0% | |
| GAAAATGGTCGCGGAACTGT+AGG | + | chr1_4:53518674-53518693 | None:intergenic | 50.0% | |
| GTTGCTAGGGAAAATGGTCG+CGG | + | chr1_4:53518683-53518702 | None:intergenic | 50.0% | |
| AGCACGCCTTTCAGTTGCTA+GGG | + | chr1_4:53518696-53518715 | None:intergenic | 50.0% | |
| TAGCACGCCTTTCAGTTGCT+AGG | + | chr1_4:53518697-53518716 | None:intergenic | 50.0% | |
| TGTGAGGTCGTTCAAGTCCA+GGG | - | chr1_4:53519185-53519204 | Msa0169970:CDS | 50.0% | |
| ACGCGCACAAAGAAGAAAGG+AGG | - | chr1_4:53519245-53519264 | Msa0169970:CDS | 50.0% | |
| CAAAATCTCCAAAGCTGGGC+CGG | - | chr1_4:53520034-53520053 | Msa0169970:intron | 50.0% | |
| AGTGATGTGACTACCGACAG+TGG | - | chr1_4:53520162-53520181 | Msa0169970:intron | 50.0% | |
| AGTGTGCTTGGTCTCGTTGT+CGG | + | chr1_4:53520211-53520230 | None:intergenic | 50.0% | |
| TGTCTGTCTGCCTCAACTTC+AGG | - | chr1_4:53520526-53520545 | Msa0169970:intron | 50.0% | |
| GTCTGTCTGCCTCAACTTCA+GGG | - | chr1_4:53520527-53520546 | Msa0169970:intron | 50.0% | |
| CTGTGAGGTCGTTCAAGTCC+AGG | - | chr1_4:53519184-53519203 | Msa0169970:CDS | 55.0% | |
| AGCAGAAGCAACAGTTGCCC+TGG | + | chr1_4:53519205-53519224 | None:intergenic | 55.0% | |
| CGTTCAGTCGACCGAAAGCT+TGG | + | chr1_4:53519228-53519247 | None:intergenic | 55.0% | |
| GGCCCCTCATGGTAAAAGCT+TGG | + | chr1_4:53519592-53519611 | None:intergenic | 55.0% | |
| ! | GGAGATTTTGCACGTGTGGG+TGG | + | chr1_4:53520024-53520043 | None:intergenic | 55.0% |
| TGTGACTACCGACAGTGGCT+TGG | - | chr1_4:53520167-53520186 | Msa0169970:intron | 55.0% | |
| ! | ACTACCGACAGTGGCTTGGA+TGG | - | chr1_4:53520171-53520190 | Msa0169970:intron | 55.0% |
| GAGACCATCCAAGCCACTGT+CGG | + | chr1_4:53520178-53520197 | None:intergenic | 55.0% | |
| TTGCACGTGTGGGTGGTAGC+TGG | + | chr1_4:53520017-53520036 | None:intergenic | 60.0% | |
| CACCGCTGTTGCTCTTTCGC+CGG | + | chr1_4:53520056-53520075 | None:intergenic | 60.0% | |
| CCTTAGGTGGAGGCCCCTCA+TGG | + | chr1_4:53519603-53519622 | None:intergenic | 65.0% | |
| CCATGAGGGGCCTCCACCTA+AGG | - | chr1_4:53519600-53519619 | Msa0169970:intron | 65.0% | |
| CTCTTTCGCCGGCCCAGCTT+TGG | + | chr1_4:53520045-53520064 | None:intergenic | 65.0% | |
| GGCCGGCGAAAGAGCAACAG+CGG | - | chr1_4:53520051-53520070 | Msa0169970:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 53517182 | 53520678 | 53517182 | ID=Msa0169970;Name=Msa0169970 |
| chr1_4 | mRNA | 53517182 | 53520678 | 53517182 | ID=Msa0169970-mRNA-1;Parent=Msa0169970;Name=Msa0169970-mRNA-1;_AED=0.06;_eAED=0.06;_QI=146|1|1|1|0.83|0.71|7|379|383 |
| chr1_4 | exon | 53517182 | 53517842 | 53517182 | ID=Msa0169970-mRNA-1:exon:15924;Parent=Msa0169970-mRNA-1 |
| chr1_4 | exon | 53518224 | 53518334 | 53518224 | ID=Msa0169970-mRNA-1:exon:15923;Parent=Msa0169970-mRNA-1 |
| chr1_4 | exon | 53518437 | 53518508 | 53518437 | ID=Msa0169970-mRNA-1:exon:15922;Parent=Msa0169970-mRNA-1 |
| chr1_4 | exon | 53518594 | 53518687 | 53518594 | ID=Msa0169970-mRNA-1:exon:15921;Parent=Msa0169970-mRNA-1 |
| chr1_4 | exon | 53518818 | 53518906 | 53518818 | ID=Msa0169970-mRNA-1:exon:15920;Parent=Msa0169970-mRNA-1 |
| chr1_4 | exon | 53519037 | 53519544 | 53519037 | ID=Msa0169970-mRNA-1:exon:15919;Parent=Msa0169970-mRNA-1 |
| chr1_4 | exon | 53520537 | 53520678 | 53520537 | ID=Msa0169970-mRNA-1:exon:15918;Parent=Msa0169970-mRNA-1 |
| chr1_4 | five_prime_UTR | 53520537 | 53520678 | 53520537 | ID=Msa0169970-mRNA-1:five_prime_utr;Parent=Msa0169970-mRNA-1 |
| chr1_4 | five_prime_UTR | 53519541 | 53519544 | 53519541 | ID=Msa0169970-mRNA-1:five_prime_utr;Parent=Msa0169970-mRNA-1 |
| chr1_4 | CDS | 53519037 | 53519540 | 53519037 | ID=Msa0169970-mRNA-1:cds;Parent=Msa0169970-mRNA-1 |
| chr1_4 | CDS | 53518818 | 53518906 | 53518818 | ID=Msa0169970-mRNA-1:cds;Parent=Msa0169970-mRNA-1 |
| chr1_4 | CDS | 53518594 | 53518687 | 53518594 | ID=Msa0169970-mRNA-1:cds;Parent=Msa0169970-mRNA-1 |
| chr1_4 | CDS | 53518437 | 53518508 | 53518437 | ID=Msa0169970-mRNA-1:cds;Parent=Msa0169970-mRNA-1 |
| chr1_4 | CDS | 53518224 | 53518334 | 53518224 | ID=Msa0169970-mRNA-1:cds;Parent=Msa0169970-mRNA-1 |
| chr1_4 | CDS | 53517561 | 53517842 | 53517561 | ID=Msa0169970-mRNA-1:cds;Parent=Msa0169970-mRNA-1 |
| chr1_4 | three_prime_UTR | 53517182 | 53517560 | 53517182 | ID=Msa0169970-mRNA-1:three_prime_utr;Parent=Msa0169970-mRNA-1 |
| Gene Sequence |
| Protein sequence |
