AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1191000

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1191000 MtrunA17_Chr8g0360401 99.382 809 5 0 1 809 1 809 0.0 1669
Msa1191000 MtrunA17_Chr4g0050661 30.590 559 350 13 27 564 21 562 2.64e-63 226
Msa1191000 MtrunA17_Chr7g0233071 27.052 329 217 6 46 372 40 347 6.38e-20 94.7
Msa1191000 MtrunA17_Chr8g0388271 26.627 338 216 6 31 356 9 326 1.13e-18 90.9
Msa1191000 MtrunA17_Chr8g0337041 32.632 190 115 4 46 231 40 220 1.20e-18 90.9
Msa1191000 MtrunA17_Chr5g0396561 31.963 219 119 6 31 231 9 215 4.74e-18 89.0
Msa1191000 MtrunA17_Chr8g0391891 25.698 358 222 9 31 372 12 341 2.25e-17 86.7
Msa1191000 MtrunA17_Chr4g0055051 29.858 211 133 3 31 231 9 214 9.10e-17 84.7
Msa1191000 MtrunA17_Chr8g0379961 29.555 247 155 8 11 253 37 268 4.98e-16 82.4
Msa1191000 MtrunA17_Chr8g0346971 29.464 224 133 5 27 231 5 222 3.95e-15 79.3
Msa1191000 MtrunA17_Chr4g0049731 30.288 208 128 4 31 231 20 217 8.89e-15 78.6
Msa1191000 MtrunA17_Chr8g0379941 28.516 256 160 9 11 257 40 281 3.52e-14 76.6
Msa1191000 MtrunA17_Chr2g0279671 29.187 209 129 4 31 231 29 226 1.93e-13 74.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1191000 AT1G53140.1 76.005 821 169 8 5 809 9 817 0.0 1250
Msa1191000 AT3G19720.1 31.083 563 346 14 25 564 27 570 2.84e-61 221
Msa1191000 AT3G19720.2 31.083 563 346 14 25 564 27 570 3.22e-61 221
Msa1191000 AT3G19720.3 29.766 598 344 16 25 564 27 606 1.09e-55 205
Msa1191000 AT3G60190.1 32.796 186 120 2 46 231 40 220 9.22e-20 94.7
Msa1191000 AT1G60530.1 28.736 261 159 7 1 253 21 262 9.81e-20 91.3
Msa1191000 AT3G61760.3 27.083 336 217 9 31 356 9 326 1.15e-18 90.5
Msa1191000 AT3G61760.2 27.083 336 217 9 31 356 9 326 1.30e-18 90.9
Msa1191000 AT3G61760.1 27.083 336 217 9 31 356 9 326 1.84e-18 90.5
Msa1191000 AT1G14830.1 26.722 363 227 11 24 372 5 342 2.46e-18 90.1
Msa1191000 AT2G44590.3 31.183 186 123 2 46 231 35 215 7.80e-18 88.6
Msa1191000 AT1G60500.1 29.918 244 153 6 12 253 38 265 4.25e-17 86.3
Msa1191000 AT5G42080.2 30.045 223 140 4 31 243 9 225 7.12e-17 84.3
Msa1191000 AT5G42080.4 30.332 211 132 3 31 231 9 214 1.33e-16 84.7
Msa1191000 AT5G42080.1 30.332 211 132 3 31 231 9 214 1.33e-16 84.7
Msa1191000 AT5G42080.3 30.332 211 132 3 31 231 9 214 1.38e-16 84.7
Msa1191000 AT4G33650.1 29.524 210 132 4 31 231 42 244 5.44e-14 76.6
Msa1191000 AT4G33650.2 29.524 210 132 4 31 231 42 244 5.44e-14 76.6
Msa1191000 AT2G14120.3 30.189 212 129 6 31 231 26 229 1.81e-12 71.6
Msa1191000 AT2G14120.2 30.189 212 129 6 31 231 26 229 1.88e-12 71.6
Msa1191000 AT2G14120.1 30.189 212 129 6 31 231 26 229 1.97e-12 71.6
Msa1191000 AT2G14120.4 30.189 212 129 6 31 231 26 229 2.79e-12 70.9
Msa1191000 AT2G44590.1 26.882 186 114 3 46 231 35 198 4.62e-11 67.0
Msa1191000 AT2G44590.2 26.882 186 114 3 46 231 35 198 4.90e-11 66.6

Find 254 sgRNAs with CRISPR-Local

Find 420 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCACCAACGGCAACAATTTC+AGG 0.151688 8_1:+34463558 None:intergenic
GAGGTCACTTGTGAACTTTC+TGG 0.154101 8_1:-34462046 Msa1191000:CDS
CTCCCCATTTCCAAATAAAA+TGG 0.180476 8_1:+34460143 None:intergenic
CTTGAGACGATTATCAAATT+TGG 0.197072 8_1:+34462772 None:intergenic
GGATGTGGATGGGGTCTTTG+TGG 0.207238 8_1:+34463677 None:intergenic
TGCTTACACTCGGTTCTTAA+AGG 0.218343 8_1:-34460625 Msa1191000:CDS
AATGCCAGTCTTCGTCTTTA+TGG 0.228816 8_1:-34461685 Msa1191000:CDS
CGCAATTCATGTCAACAAAT+TGG 0.260466 8_1:-34459146 Msa1191000:three_prime_UTR
TTCAAGTCCTATATTGGTTT+TGG 0.261984 8_1:-34462160 Msa1191000:CDS
ATTCTGGACGCTCTCTTTCT+TGG 0.266153 8_1:+34460213 None:intergenic
TGAACCTCGTTGCCGCTTCC+AGG 0.270752 8_1:-34463412 Msa1191000:intron
CCAGTGTTGCATTCTTTAGA+TGG 0.280542 8_1:+34459088 None:intergenic
GAAAAGTTCAAGTCCTATAT+TGG 0.282691 8_1:-34462166 Msa1191000:CDS
TTTAGGAAGCTTATTTGATT+TGG 0.292118 8_1:-34461322 Msa1191000:CDS
CTCAAAGTGGCATTGGGATT+TGG 0.294675 8_1:-34461738 Msa1191000:CDS
TGACGAGACCCTCTGTAATT+TGG 0.297105 8_1:-34459119 Msa1191000:three_prime_UTR
TTTGCCATTTCCTGTCATTC+TGG 0.314744 8_1:+34460197 None:intergenic
CTTAGGAGAAACTGCTGTTT+TGG 0.332944 8_1:+34463145 None:intergenic
GTTGACATGAATTGCGTCAT+AGG 0.334898 8_1:+34459153 None:intergenic
TGATCAGGAGATGGGGTCTC+AGG 0.345824 8_1:+34460297 None:intergenic
AGAAGAGAAGAGAGGGGAAA+AGG 0.346644 8_1:+34463749 None:intergenic
CATCAGGGTGCCTTGATTGA+TGG 0.346683 8_1:-34461814 Msa1191000:intron
GATAGATGTCATGTAACCTT+TGG 0.352679 8_1:-34458816 Msa1191000:three_prime_UTR
AAAGACGAAGACTGGCATTC+GGG 0.353154 8_1:+34461689 None:intergenic
CAAGCCGCTGCTGTCGCTTT+CGG 0.355151 8_1:-34463597 Msa1191000:CDS
AAGTAGCAGACCTGTGAGTA+TGG 0.356134 8_1:+34460546 None:intergenic
GATCGCCTTGTTGTGGCTCT+CGG 0.357701 8_1:-34459404 Msa1191000:CDS
TGGGGTCTTTGTGGGAGTGG+TGG 0.361834 8_1:+34463686 None:intergenic
GGTCTTTGTGGGAGTGGTGG+TGG 0.363072 8_1:+34463689 None:intergenic
CTTGACCGGGTGGATGTGGA+TGG 0.367812 8_1:+34463666 None:intergenic
AGAGAAGAGAGGGGAAAAGG+AGG 0.369915 8_1:+34463752 None:intergenic
GTAAGCTTCGAAGCGAGATT+TGG 0.370913 8_1:+34463629 None:intergenic
GTATGGAAGTCCGGTGGTTT+CGG 0.371097 8_1:-34463222 Msa1191000:CDS
GAGAAGAGAGGGGAAAAGGA+GGG 0.374606 8_1:+34463753 None:intergenic
TGTGGCCCTGCCTAAGGATA+GGG 0.377422 8_1:-34462287 Msa1191000:CDS
GATGTGGATGGGGTCTTTGT+GGG 0.379532 8_1:+34463678 None:intergenic
CAGCCAGGTGATCCTGTATA+TGG 0.379808 8_1:-34460276 Msa1191000:CDS
ACAGGATCACCTGGCTGATC+AGG 0.382456 8_1:+34460282 None:intergenic
GAGGAAGATTCAGAAGAGTA+TGG 0.382821 8_1:-34463239 Msa1191000:CDS
AATTTGTAGCTAAAGCTAAA+AGG 0.392145 8_1:+34458881 None:intergenic
AAACCCCGGTGTGTCAATAA+TGG 0.393318 8_1:+34463079 None:intergenic
CACTTGTGAACTTTCTGGAT+TGG 0.394884 8_1:-34462041 Msa1191000:CDS
GTTGAAGGAACAAGAGTATA+CGG 0.395803 8_1:+34462882 None:intergenic
CACGTATACGTGCGAAATGC+TGG 0.400253 8_1:+34460079 None:intergenic
ATAGATGTCATGTAACCTTT+GGG 0.401694 8_1:-34458815 Msa1191000:three_prime_UTR
AATCGGAGTGCTTTCTTGAC+CGG 0.402487 8_1:+34463652 None:intergenic
TTGTGGCCCTGCCTAAGGAT+AGG 0.402756 8_1:-34462288 Msa1191000:CDS
ATTCCACACTACTTTGTTGA+AGG 0.404178 8_1:+34462867 None:intergenic
TTGACCGGGTGGATGTGGAT+GGG 0.404185 8_1:+34463667 None:intergenic
TTGCCCATGCTGGCCGAGGT+GGG 0.406137 8_1:-34461446 Msa1191000:CDS
TGAACTCATTCAAGCAAGAA+TGG 0.407252 8_1:+34459267 None:intergenic
TGCCCATGCTGGCCGAGGTG+GGG 0.410115 8_1:-34461445 Msa1191000:CDS
CCTTGTTGTGGCTCTCGGGT+TGG 0.414030 8_1:-34459399 Msa1191000:CDS
CTTGATCCCTCCTTACATCA+TGG 0.416125 8_1:+34460415 None:intergenic
TATTCAGCTTTGAGTACAAT+TGG 0.418369 8_1:+34463122 None:intergenic
TGGAATGGTGCTCCTCTTTG+TGG 0.418865 8_1:-34462850 Msa1191000:CDS
GAAGAGAGGGGAAAAGGAGG+GGG 0.419698 8_1:+34463755 None:intergenic
GTGTCAATAATGGTAAGATT+TGG 0.420577 8_1:+34463089 None:intergenic
GCCCATGCTGGCCGAGGTGG+GGG 0.421052 8_1:-34461444 Msa1191000:CDS
CAGACGGCCAAAACCAATAT+AGG 0.424479 8_1:+34462153 None:intergenic
TTTGGAAATGGGGAGAGAAC+AGG 0.425343 8_1:-34460135 Msa1191000:CDS
GCGTCCAGAATGACAGGAAA+TGG 0.426146 8_1:-34460201 Msa1191000:CDS
AGAGAAGAGAAGAGAAGAGA+GGG 0.428868 8_1:+34463742 None:intergenic
GGGTCTCAGGGATAGTCATC+TGG 0.431491 8_1:+34460310 None:intergenic
TTTCTATGCCCTCCATATAC+AGG 0.431806 8_1:+34460264 None:intergenic
AGAAGAGAGGGGAAAAGGAG+GGG 0.432349 8_1:+34463754 None:intergenic
GGGAGTGGTGGTGGATGACA+TGG 0.438859 8_1:+34463698 None:intergenic
GGTTATCTTCAAAAGTGCTT+CGG 0.440026 8_1:+34463166 None:intergenic
GACATGGTGGGTGGTAAGTA+AGG 0.441206 8_1:+34463714 None:intergenic
AGTGGTGGTGGATGACATGG+TGG 0.444050 8_1:+34463701 None:intergenic
AGTCGGTAATCTGAAATTAG+AGG 0.444330 8_1:-34459009 Msa1191000:three_prime_UTR
GCTTTGAGTACAATTGGCTT+AGG 0.447637 8_1:+34463128 None:intergenic
TAGAAGCTTACCAAGGAGTC+AGG 0.448083 8_1:+34460010 None:intergenic
CATGACATCTATCGATCATA+AGG 0.452181 8_1:+34458826 None:intergenic
ATGGACATGTTTGTCGCTCC+TGG 0.456326 8_1:-34459347 Msa1191000:CDS
ATCTCATCAGGCGTGTTCTC+CGG 0.457464 8_1:+34462941 None:intergenic
CCTGAAATTGTTGCCGTTGG+TGG 0.458140 8_1:-34463558 Msa1191000:CDS
CTTGCCCATGCTGGCCGAGG+TGG 0.459436 8_1:-34461447 Msa1191000:CDS
TAAAGACGAAGACTGGCATT+CGG 0.460049 8_1:+34461688 None:intergenic
CGTGAAGTTCTTGTTGAAAG+AGG 0.460397 8_1:-34460060 Msa1191000:CDS
GGATGGGGTCTTTGTGGGAG+TGG 0.462001 8_1:+34463683 None:intergenic
TGAAGCATTTGAAGAATAAG+AGG 0.464570 8_1:+34463450 None:intergenic
AAGAGAGCGTCCAGAATGAC+AGG 0.466864 8_1:-34460207 Msa1191000:CDS
TGACCGGGTGGATGTGGATG+GGG 0.468953 8_1:+34463668 None:intergenic
TCAAGCAAGGCAAGAGTTGA+TGG 0.470376 8_1:+34462082 None:intergenic
AATATATTGCTTGCCCATGC+TGG 0.470464 8_1:-34461456 Msa1191000:CDS
GAGCGGTCTCAAAGTGGCAT+TGG 0.471095 8_1:-34461745 Msa1191000:CDS
TTTCCCCACTGCTCAGGGGA+AGG 0.472652 8_1:+34461781 None:intergenic
AGCAGTGCAAGCAGCTTGTT+AGG 0.478959 8_1:-34460593 Msa1191000:CDS
GGGAGCTCTTTCCATCAGAT+TGG 0.479145 8_1:+34463535 None:intergenic
AGCGGTCTCAAAGTGGCATT+GGG 0.479457 8_1:-34461744 Msa1191000:CDS
CTTTAAGGTGTGCTTACACT+CGG 0.479890 8_1:-34460635 Msa1191000:CDS
CTTTCTTGACCGGGTGGATG+TGG 0.481008 8_1:+34463662 None:intergenic
ATCTAGTAACTCTGATCAAA+GGG 0.481370 8_1:+34459229 None:intergenic
TTTGATCATCAGCATTCAGC+AGG 0.485481 8_1:+34458949 None:intergenic
CGAAAGCGACAGCAGCGGCT+TGG 0.487855 8_1:+34463598 None:intergenic
ACTCTGGATTCCTGACTCCT+TGG 0.488697 8_1:-34460020 Msa1191000:intron
GAAATGTTGCCCCTATCCTT+AGG 0.488777 8_1:+34462277 None:intergenic
AAATGAAGAGGCTGAAGCCT+GGG 0.492594 8_1:+34460470 None:intergenic
TGTTGCCCCTATCCTTAGGC+AGG 0.492947 8_1:+34462281 None:intergenic
CAGTGTTGCATTCTTTAGAT+GGG 0.493104 8_1:+34459089 None:intergenic
CACACCGGGGTTTGTTCTCA+AGG 0.496399 8_1:-34463069 Msa1191000:intron
TTGAGTGCAAGTGGTTACCT+TGG 0.496456 8_1:-34462331 Msa1191000:CDS
AAAATGAAGAGGCTGAAGCC+TGG 0.498478 8_1:+34460469 None:intergenic
ATTCTGCTTCCCATGATGTA+AGG 0.500060 8_1:-34460425 Msa1191000:CDS
TTCAGAAGAGTATGGAAGTC+CGG 0.500297 8_1:-34463231 Msa1191000:CDS
GCAGATCTCTCATGTGGACT+CGG 0.503415 8_1:-34462236 Msa1191000:CDS
CAATGTCCGTGAAGTTGAGA+TGG 0.505101 8_1:-34463484 Msa1191000:CDS
CCAGTCTTCGTCTTTATGGA+GGG 0.505627 8_1:-34461681 Msa1191000:CDS
TCCCTTCTCGAAGCACTCCT+CGG 0.506447 8_1:-34463516 Msa1191000:CDS
TTGATCCCTCCTTACATCAT+GGG 0.507874 8_1:+34460416 None:intergenic
ATGGAGGGGCTGCATTTGAG+AGG 0.509770 8_1:-34461666 Msa1191000:CDS
ATCGGAGTGCTTTCTTGACC+GGG 0.510588 8_1:+34463653 None:intergenic
TGTGAACGATGAGAAATTCA+TGG 0.512127 8_1:-34459366 Msa1191000:CDS
ATCTGCTGCACCATCAATCA+AGG 0.512415 8_1:+34461804 None:intergenic
AGTGGCATTGGGATTTGGCC+TGG 0.512652 8_1:-34461733 Msa1191000:CDS
CACCTGGCTGATCAGGAGAT+GGG 0.515425 8_1:+34460289 None:intergenic
ATTTACTGATCGGTGGGAAG+TGG 0.515582 8_1:-34462362 Msa1191000:CDS
AAATTGATCCCACGTTTAGA+CGG 0.515819 8_1:-34462811 Msa1191000:CDS
GAAACTTGAAGCGTTTATGC+CGG 0.520142 8_1:+34460503 None:intergenic
TCAGAAATCTGTTTATCAGC+TGG 0.521591 8_1:-34460102 Msa1191000:CDS
TCACCTGGCTGATCAGGAGA+TGG 0.523556 8_1:+34460288 None:intergenic
GATCTAGTAACTCTGATCAA+AGG 0.524264 8_1:+34459228 None:intergenic
GCCAGTCTTCGTCTTTATGG+AGG 0.526748 8_1:-34461682 Msa1191000:CDS
CACCAACGGCAACAATTTCA+GGG 0.530283 8_1:+34463559 None:intergenic
ATCCCTGAAATTGTTGCCGT+TGG 0.530967 8_1:-34463561 Msa1191000:CDS
GGAAACATGGATGGCTATGT+AGG 0.531101 8_1:-34460669 Msa1191000:CDS
ACCATGGAAAGAATCTCATC+AGG 0.532315 8_1:+34462929 None:intergenic
CTCTTGCCTTGCTTGAGCAA+AGG 0.532479 8_1:-34462075 Msa1191000:CDS
TCCATCAGATTGGCCACCAA+CGG 0.533133 8_1:+34463545 None:intergenic
GCCTGATGAGATTCTTTCCA+TGG 0.536247 8_1:-34462930 Msa1191000:CDS
TCATCTCCGCGATGGTGTCA+AGG 0.537521 8_1:-34462203 Msa1191000:CDS
TCTTTCCATGGTGAAGACAT+TGG 0.538252 8_1:-34462918 Msa1191000:CDS
ACGGCAACAATTTCAGGGAT+GGG 0.539046 8_1:+34463564 None:intergenic
AATGACTTTCAACCTTGTGC+CGG 0.540900 8_1:-34460522 Msa1191000:CDS
AAGAGAAGAGAAGAGAAGAG+AGG 0.541421 8_1:+34463741 None:intergenic
AAGTTTCAACAAATTTCCCC+AGG 0.541943 8_1:-34460487 Msa1191000:CDS
ATAGCAAAACCATGGCTCCT+TGG 0.542677 8_1:+34459204 None:intergenic
CGACAGCAGCGGCTTGGAGA+CGG 0.542851 8_1:+34463604 None:intergenic
ACCTCCAGAAAAGAATGCAC+TGG 0.543318 8_1:-34460385 Msa1191000:CDS
GAGAAGAGAAGAGAAGAGAG+GGG 0.543345 8_1:+34463743 None:intergenic
CCCTCCATAAAGACGAAGAC+TGG 0.543941 8_1:+34461681 None:intergenic
GTAGGCGAAGAAGGGTGAAC+CGG 0.544431 8_1:-34462960 Msa1191000:intron
CACGTGCTGCTGCTAGATCA+TGG 0.544481 8_1:-34461389 Msa1191000:CDS
TTCGAAGCGAGATTTGGAAT+CGG 0.545179 8_1:+34463635 None:intergenic
AGATCCTTCCCCTGAGCAGT+GGG 0.546793 8_1:-34461785 Msa1191000:CDS
AACGGCAACAATTTCAGGGA+TGG 0.548624 8_1:+34463563 None:intergenic
CTTACCATTATTGACACACC+GGG 0.551065 8_1:-34463083 Msa1191000:CDS
GATCAGGAGATGGGGTCTCA+GGG 0.554324 8_1:+34460298 None:intergenic
ACCGAGGAGTGCTTCGAGAA+GGG 0.554409 8_1:+34463515 None:intergenic
AAAGTGTGTTTAGTATGAAG+TGG 0.556193 8_1:-34458778 Msa1191000:three_prime_UTR
AACCGAGGAGTGCTTCGAGA+AGG 0.556754 8_1:+34463514 None:intergenic
GTGGTGGTGGATGACATGGT+GGG 0.557542 8_1:+34463702 None:intergenic
CCTCCATATACAGGATCACC+TGG 0.558162 8_1:+34460273 None:intergenic
TGTATATGGAGGGCATAGAA+AGG 0.559667 8_1:-34460262 Msa1191000:CDS
CGGCAACAATTTCAGGGATG+GGG 0.560566 8_1:+34463565 None:intergenic
AGTTAGATTTACTCAGTAGT+CGG 0.563051 8_1:-34459026 Msa1191000:three_prime_UTR
GGAGGGCATAGAAAGGAGCT+TGG 0.564041 8_1:-34460255 Msa1191000:CDS
AAGGTCGAGTGTTGTCTCCA+AGG 0.564899 8_1:+34462314 None:intergenic
CAGATCCTTCCCCTGAGCAG+TGG 0.565180 8_1:-34461786 Msa1191000:CDS
CAGATGAGAAATGTCTGAAG+TGG 0.568898 8_1:+34462003 None:intergenic
ACCCCATCTCCTGATCAGCC+AGG 0.569139 8_1:-34460291 Msa1191000:CDS
CTTCAGACATTTCTCATCTG+AGG 0.569507 8_1:-34462000 Msa1191000:CDS
TACCTATTATTAAAACCCAA+AGG 0.573464 8_1:+34458800 None:intergenic
TGAATGAATTTACCTGGAAG+CGG 0.574973 8_1:+34463400 None:intergenic
ATGGACTGGTAACTGAATCA+AGG 0.577837 8_1:+34460565 None:intergenic
TTCACATCGGTGATGACACC+AGG 0.578996 8_1:+34461715 None:intergenic
GAGCCACAACAAGGCGATCG+CGG 0.580908 8_1:+34459408 None:intergenic
GTGGCCCTGCCTAAGGATAG+GGG 0.581037 8_1:-34462286 Msa1191000:CDS
TTTCAAATGAAGAGTTCCGC+AGG 0.581321 8_1:-34462258 Msa1191000:CDS
TTTGTATCGTAGGCGAAGAA+GGG 0.581656 8_1:-34462968 Msa1191000:intron
GAGTACCCATCTCAACTTCA+CGG 0.582067 8_1:+34463478 None:intergenic
GCCGTTGGTGGCCAATCTGA+TGG 0.582734 8_1:-34463546 Msa1191000:CDS
GTGGTGGATGACATGGTGGG+TGG 0.583991 8_1:+34463705 None:intergenic
GTAGGAATTTACTGATCGGT+GGG 0.584050 8_1:-34462368 Msa1191000:intron
TGCTTCCCATGATGTAAGGA+GGG 0.587091 8_1:-34460421 Msa1191000:CDS
CAAATTTGATAATCGTCTCA+AGG 0.587563 8_1:-34462771 Msa1191000:intron
CATCTCCGCGATGGTGTCAA+GGG 0.588015 8_1:-34462202 Msa1191000:CDS
TCTTACCATTATTGACACAC+CGG 0.591780 8_1:-34463084 Msa1191000:CDS
TGTAGGAATTTACTGATCGG+TGG 0.592128 8_1:-34462369 Msa1191000:intron
TGGAGGGGCTGCATTTGAGA+GGG 0.593307 8_1:-34461665 Msa1191000:CDS
GCTTGGAATATGCAATGACA+TGG 0.594337 8_1:-34460238 Msa1191000:CDS
ACTAGATCTCCAAGGAGCCA+TGG 0.595731 8_1:-34459213 Msa1191000:three_prime_UTR
TGTAGAACATCTATGGCACC+AGG 0.596627 8_1:+34459329 None:intergenic
CTGCTTCCCATGATGTAAGG+AGG 0.596811 8_1:-34460422 Msa1191000:CDS
GCAACGAGGTTCAAGAGCGG+AGG 0.599376 8_1:+34463422 None:intergenic
ATCGTAGATGCCGAAACCAC+CGG 0.600918 8_1:+34463212 None:intergenic
ACCTGGCTGATCAGGAGATG+GGG 0.601811 8_1:+34460290 None:intergenic
GTTACATCGACATTAAACTC+TGG 0.601946 8_1:-34460036 Msa1191000:CDS
GAAGCGTTTATGCCGGCACA+AGG 0.602447 8_1:+34460510 None:intergenic
CCAGGTGATCCTGTATATGG+AGG 0.602528 8_1:-34460273 Msa1191000:CDS
ATTCAGCAGGTAAGTGAATG+TGG 0.602936 8_1:+34458962 None:intergenic
CAGCCGCGATCGCCTTGTTG+TGG 0.604218 8_1:-34459411 Msa1191000:CDS
TTGCTTGCCCATGCTGGCCG+AGG 0.604281 8_1:-34461450 Msa1191000:CDS
TTCAACAAAGTAGTGTGGAA+TGG 0.605436 8_1:-34462865 Msa1191000:CDS
CAGTCTTCGTCTTTATGGAG+GGG 0.605567 8_1:-34461680 Msa1191000:CDS
AATGTCCGTGAAGTTGAGAT+GGG 0.609276 8_1:-34463483 Msa1191000:CDS
TACATGCTGAATCATGCCTA+CGG 0.610062 8_1:+34461286 None:intergenic
CAACGAGGTTCAAGAGCGGA+GGG 0.610546 8_1:+34463423 None:intergenic
CTCCGCGATGGTGTCAAGGG+AGG 0.611557 8_1:-34462199 Msa1191000:CDS
GCAGACCTGTGAGTATGGAC+TGG 0.612333 8_1:+34460551 None:intergenic
GATCGCTATTTGAGTGCAAG+TGG 0.616547 8_1:-34462340 Msa1191000:CDS
CCATCTAAAGAATGCAACAC+TGG 0.618459 8_1:-34459088 Msa1191000:three_prime_UTR
CCAACCCGAGAGCCACAACA+AGG 0.618603 8_1:+34459399 None:intergenic
GTTCCTTCAACAAAGTAGTG+TGG 0.620081 8_1:-34462870 Msa1191000:CDS
AATGATTGTCCGTCTAAACG+TGG 0.620311 8_1:+34462802 None:intergenic
CAGGTGATCCTGTATATGGA+GGG 0.623092 8_1:-34460272 Msa1191000:CDS
ACTACACCTTTGCTCAAGCA+AGG 0.627943 8_1:+34462069 None:intergenic
AGACGAAGACTGGCATTCGG+GGG 0.630834 8_1:+34461691 None:intergenic
CTCGCCGAAAGCGACAGCAG+CGG 0.637069 8_1:+34463593 None:intergenic
AGTTACCAGTCCATACTCAC+AGG 0.637819 8_1:-34460556 Msa1191000:CDS
GTTATGCATCATCTCCGCGA+TGG 0.637901 8_1:-34462211 Msa1191000:CDS
ACTCCAAGTAATCCCTCAGA+CGG 0.637956 8_1:+34462137 None:intergenic
CTTGGAATATGCAATGACAT+GGG 0.638221 8_1:-34460237 Msa1191000:CDS
TCCAGAAAAGAATGCACTGG+AGG 0.638622 8_1:-34460382 Msa1191000:CDS
AATGAAGAGGCTGAAGCCTG+GGG 0.640485 8_1:+34460471 None:intergenic
ACATGTAGGAATTTACTGAT+CGG 0.642242 8_1:-34462372 Msa1191000:intron
GCACTGGAGGAAACAACACC+AGG 0.642547 8_1:-34460369 Msa1191000:CDS
TCACATGCAGTATCAAGAAG+AGG 0.644305 8_1:+34461360 None:intergenic
AATAGAGTCTAACCACAAAG+AGG 0.646234 8_1:+34462838 None:intergenic
TTCAAAGCATAGCAAAACCA+TGG 0.646496 8_1:+34459196 None:intergenic
AGACCCCATCCACATCCACC+CGG 0.647245 8_1:-34463671 Msa1191000:CDS
AACAAGAGTATACGGTGTGG+AGG 0.647370 8_1:+34462890 None:intergenic
GAAGCATTTGAAGAATAAGA+GGG 0.647522 8_1:+34463451 None:intergenic
AAGACGAAGACTGGCATTCG+GGG 0.649844 8_1:+34461690 None:intergenic
GTTGCCCCTATCCTTAGGCA+GGG 0.652941 8_1:+34462282 None:intergenic
CCGCAGGCAGATCTCTCATG+TGG 0.657902 8_1:-34462242 Msa1191000:CDS
GACGAAGACTGGCATTCGGG+GGG 0.660082 8_1:+34461692 None:intergenic
GGAGTGCTTTCTTGACCGGG+TGG 0.664871 8_1:+34463656 None:intergenic
TTGGAATATGCAATGACATG+GGG 0.665817 8_1:-34460236 Msa1191000:CDS
TTACACATGCTTCAACACGC+AGG 0.667443 8_1:+34459050 None:intergenic
TTCCTAAAACAAAAGCAAGA+CGG 0.669285 8_1:+34461337 None:intergenic
AGTAGCCAATGTCTTCACCA+TGG 0.677040 8_1:+34462913 None:intergenic
AGAAGAGTATGGAAGTCCGG+TGG 0.677609 8_1:-34463228 Msa1191000:CDS
GTGTAATACCAAATTACAGA+GGG 0.678046 8_1:+34459111 None:intergenic
GATCTCTCATGTGGACTCGG+AGG 0.678782 8_1:-34462233 Msa1191000:CDS
AGCTTCTATCAGCAACCATG+TGG 0.680329 8_1:-34461957 Msa1191000:intron
GCTTGAGCAAAGGTGTAGTG+AGG 0.681974 8_1:-34462065 Msa1191000:CDS
TCAGAGTTACTAGATCTCCA+AGG 0.688026 8_1:-34459221 Msa1191000:three_prime_UTR
TGGCTCTAGAAAGAAACCGT+AGG 0.694098 8_1:-34461302 Msa1191000:CDS
GTAGAAGAGCGGTCTCAAAG+TGG 0.702768 8_1:-34461751 Msa1191000:CDS
ATGATTGTCCGTCTAAACGT+GGG 0.703297 8_1:+34462803 None:intergenic
GCATTTGAAGAATAAGAGGG+CGG 0.705612 8_1:+34463454 None:intergenic
GGTGTAATACCAAATTACAG+AGG 0.711697 8_1:+34459110 None:intergenic
AATACCTTGAGAACAAACCC+CGG 0.725703 8_1:+34463065 None:intergenic
GCGGCAACGAGGTTCAAGAG+CGG 0.730968 8_1:+34463419 None:intergenic
AACCTCCCTTGACACCATCG+CGG 0.733484 8_1:+34462197 None:intergenic
GGACATTGAAGCGAAAACCG+AGG 0.735109 8_1:+34463499 None:intergenic
CCACATGAGAGATCTGCCTG+CGG 0.735319 8_1:+34462242 None:intergenic
TTTACCTGGAAGCGGCAACG+AGG 0.743831 8_1:+34463408 None:intergenic
AGGAACAAGAGTATACGGTG+TGG 0.749192 8_1:+34462887 None:intergenic
GATCCTTCCCCTGAGCAGTG+GGG 0.749398 8_1:-34461784 Msa1191000:CDS
GACTGGTAACTGAATCAAGG+TGG 0.786961 8_1:+34460568 None:intergenic
TTACCATTATTGACACACCG+GGG 0.788837 8_1:-34463082 Msa1191000:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATACATATTATTGTTTTAAA+GGG - chr8_1:34460104-34460123 Msa1191000:CDS 10.0%
!! TAAATAAATAAATAACTTTG+AGG + chr8_1:34462829-34462848 None:intergenic 10.0%
!!! TTTGTTAATTCATGTAATTT+TGG - chr8_1:34459236-34459255 Msa1191000:exon 15.0%
!! AATTGCAATCTTTAATATTA+CGG + chr8_1:34459894-34459913 None:intergenic 15.0%
!!! GATACATATTATTGTTTTAA+AGG - chr8_1:34460103-34460122 Msa1191000:CDS 15.0%
!! AAATATAGTTAGAATCTAAA+GGG + chr8_1:34461687-34461706 None:intergenic 15.0%
!! AAAATATAGTTAGAATCTAA+AGG + chr8_1:34461688-34461707 None:intergenic 15.0%
!! TTTAGTAGTATTTATGTATT+TGG + chr8_1:34462911-34462930 None:intergenic 15.0%
!! AATTATTGAATATACTTATG+TGG + chr8_1:34463065-34463084 None:intergenic 15.0%
!!! TTAATTTTGAAGTTGTCATT+CGG - chr8_1:34459793-34459812 Msa1191000:intron 20.0%
!!! AGCAAAATTTATTTTGAACT+TGG - chr8_1:34460630-34460649 Msa1191000:CDS 20.0%
!!! TAACTATTTTACTCTACAAA+TGG - chr8_1:34460693-34460712 Msa1191000:intron 20.0%
!!! GAATTTCAATTTGAAATGAA+AGG + chr8_1:34461028-34461047 None:intergenic 20.0%
!! CATTTCAAATTGAAATTCAT+TGG - chr8_1:34461030-34461049 Msa1191000:intron 20.0%
!! GTATCTATCATTACTTTAAT+AGG - chr8_1:34461052-34461071 Msa1191000:intron 20.0%
!! AAATATTTAATTGCATAGAC+AGG + chr8_1:34461591-34461610 None:intergenic 20.0%
!! TTAGTTTATTTCATTTCTTC+TGG - chr8_1:34461654-34461673 Msa1191000:CDS 20.0%
!! CAAGAAATGAAACAAAATAT+AGG + chr8_1:34461785-34461804 None:intergenic 20.0%
!!! CAAAATGATTCCATTTTATT+TGG - chr8_1:34462383-34462402 Msa1191000:intron 20.0%
!!! ATTCCATTTTATTTGGAAAT+GGG - chr8_1:34462390-34462409 Msa1191000:intron 20.0%
!! GAAAATAAGTGACATAAATA+TGG + chr8_1:34462752-34462771 None:intergenic 20.0%
!! ATAAATACTACTAAATATGC+CGG - chr8_1:34462916-34462935 Msa1191000:CDS 20.0%
!!! ATGACATACAATTTTTAATG+TGG - chr8_1:34463038-34463057 Msa1191000:intron 20.0%
!!! ATAAACTAGCAATTTTTTAG+AGG + chr8_1:34463620-34463639 None:intergenic 20.0%
!!! AAAAATTGCTAGTTTATAGA+AGG - chr8_1:34463623-34463642 Msa1191000:CDS 20.0%
!! TTACTTTCAAAAAGAAATGT+TGG - chr8_1:34463687-34463706 Msa1191000:CDS 20.0%
! GTTGCGTAAAAAAATAATAC+AGG - chr8_1:34459275-34459294 Msa1191000:CDS 25.0%
!! ACATCACTGTTCTAAATAAA+CGG - chr8_1:34459824-34459843 Msa1191000:intron 25.0%
!! GGTATGTATCATTTTATACA+AGG + chr8_1:34459957-34459976 None:intergenic 25.0%
!!! TGTTTTAAAGGGTTCAATAA+TGG - chr8_1:34460115-34460134 Msa1191000:CDS 25.0%
! TTTAGGAAGCTTATTTGATT+TGG - chr8_1:34461214-34461233 Msa1191000:intron 25.0%
! ACATCATAAATAAGACAGAA+GGG + chr8_1:34461302-34461321 None:intergenic 25.0%
! AACATCATAAATAAGACAGA+AGG + chr8_1:34461303-34461322 None:intergenic 25.0%
! AGATATTAAGAGAAGAAGAA+AGG - chr8_1:34461428-34461447 Msa1191000:CDS 25.0%
! GGAAATAAAGAGAAAGAAAT+TGG - chr8_1:34461449-34461468 Msa1191000:CDS 25.0%
! GAAATAAATTAGGGTTCAAA+TGG + chr8_1:34461569-34461588 None:intergenic 25.0%
! CATAGACAGGAAATAAATTA+GGG + chr8_1:34461578-34461597 None:intergenic 25.0%
! AAAACACAGAAGTTAATTTC+TGG + chr8_1:34461624-34461643 None:intergenic 25.0%
!! AGAAATTAACTTCTGTGTTT+TGG - chr8_1:34461623-34461642 Msa1191000:CDS 25.0%
!! GAAATTAACTTCTGTGTTTT+GGG - chr8_1:34461624-34461643 Msa1191000:CDS 25.0%
! CAATTCAAGAAAAAATGAAG+AGG + chr8_1:34462081-34462100 None:intergenic 25.0%
!!! GATTCCATTTTATTTGGAAA+TGG - chr8_1:34462389-34462408 Msa1191000:intron 25.0%
!!! TTCCATTTTATTTGGAAATG+GGG - chr8_1:34462391-34462410 Msa1191000:intron 25.0%
!!! TTATTTATTTTCTGCGATCT+TGG - chr8_1:34462566-34462585 Msa1191000:intron 25.0%
!!! TTAATTTGTTCGACAAGATA+AGG - chr8_1:34462872-34462891 Msa1191000:CDS 25.0%
! AATGAAGAAACATGAAATAC+CGG + chr8_1:34462938-34462957 None:intergenic 25.0%
! AGCACTATCATTATCATTAA+GGG + chr8_1:34462983-34463002 None:intergenic 25.0%
! AAGCACTATCATTATCATTA+AGG + chr8_1:34462984-34463003 None:intergenic 25.0%
!! TTCATTTTGTAGAACATCTA+TGG + chr8_1:34463217-34463236 None:intergenic 25.0%
! AATTTGTAGCTAAAGCTAAA+AGG + chr8_1:34463658-34463677 None:intergenic 25.0%
!!! AACCTTTGGGTTTTAATAAT+AGG - chr8_1:34463734-34463753 Msa1191000:five_prime_UTR 25.0%
! TACCTATTATTAAAACCCAA+AGG + chr8_1:34463739-34463758 None:intergenic 25.0%
! GAAGCATTTGAAGAATAAGA+GGG + chr8_1:34459088-34459107 None:intergenic 30.0%
! TGAAGCATTTGAAGAATAAG+AGG + chr8_1:34459089-34459108 None:intergenic 30.0%
AGAGAATGAATGAATTTACC+TGG + chr8_1:34459145-34459164 None:intergenic 30.0%
GCGTAAAAAAATAATACAGG+AGG - chr8_1:34459278-34459297 Msa1191000:CDS 30.0%
!! TATTCAGCTTTGAGTACAAT+TGG + chr8_1:34459417-34459436 None:intergenic 30.0%
GTGTCAATAATGGTAAGATT+TGG + chr8_1:34459450-34459469 None:intergenic 30.0%
!! ATCTGATTGTTTTGTATCGT+AGG - chr8_1:34459558-34459577 Msa1191000:intron 30.0%
CTTGAGACGATTATCAAATT+TGG + chr8_1:34459767-34459786 None:intergenic 30.0%
! CAAATTTGATAATCGTCTCA+AGG - chr8_1:34459765-34459784 Msa1191000:intron 30.0%
! CATCACTGTTCTAAATAAAC+GGG - chr8_1:34459825-34459844 Msa1191000:intron 30.0%
TTTAATATTACGGACAATCG+CGG + chr8_1:34459884-34459903 None:intergenic 30.0%
CAAAGTTGCAATAACATTCA+CGG + chr8_1:34459926-34459945 None:intergenic 30.0%
GTTAGTAATGTGATACATGT+AGG - chr8_1:34460150-34460169 Msa1191000:CDS 30.0%
ACATGTAGGAATTTACTGAT+CGG - chr8_1:34460164-34460183 Msa1191000:CDS 30.0%
GAAAAGTTCAAGTCCTATAT+TGG - chr8_1:34460370-34460389 Msa1191000:CDS 30.0%
!!! TTCAAGTCCTATATTGGTTT+TGG - chr8_1:34460376-34460395 Msa1191000:CDS 30.0%
! TGGATTGGATTCAAAAATTG+AGG - chr8_1:34460510-34460529 Msa1191000:CDS 30.0%
TCATAAACTCATATGATCTG+AGG - chr8_1:34460982-34461001 Msa1191000:intron 30.0%
TTCCTAAAACAAAAGCAAGA+CGG + chr8_1:34461202-34461221 None:intergenic 30.0%
!!! AATATTTTTTCCCCAAGTCT+TGG - chr8_1:34461349-34461368 Msa1191000:CDS 30.0%
GCATAGACAGGAAATAAATT+AGG + chr8_1:34461579-34461598 None:intergenic 30.0%
!! TTGTTTGTTTTCCATGAAGA+TGG - chr8_1:34461834-34461853 Msa1191000:intron 30.0%
!! TGTTTGTTTTCCATGAAGAT+GGG - chr8_1:34461835-34461854 Msa1191000:intron 30.0%
ACATAAATATGGACACAGAA+AGG + chr8_1:34462741-34462760 None:intergenic 30.0%
!! ATAAATAACTTTGAGGCTTC+CGG + chr8_1:34462822-34462841 None:intergenic 30.0%
ACTATCATTATCATTAAGGG+AGG + chr8_1:34462980-34462999 None:intergenic 30.0%
ATCTAGTAACTCTGATCAAA+GGG + chr8_1:34463310-34463329 None:intergenic 30.0%
GTGTAATACCAAATTACAGA+GGG + chr8_1:34463428-34463447 None:intergenic 30.0%
AGTTAGATTTACTCAGTAGT+CGG - chr8_1:34463510-34463529 Msa1191000:CDS 30.0%
ATAGATGTCATGTAACCTTT+GGG - chr8_1:34463721-34463740 Msa1191000:five_prime_UTR 30.0%
AAAGTGTGTTTAGTATGAAG+TGG - chr8_1:34463758-34463777 Msa1191000:five_prime_UTR 30.0%
TGAATGAATTTACCTGGAAG+CGG + chr8_1:34459139-34459158 None:intergenic 35.0%
AGTGCTTCACAAATTCTTGT+TGG - chr8_1:34459201-34459220 Msa1191000:three_prime_UTR 35.0%
!! GGTTATCTTCAAAAGTGCTT+CGG + chr8_1:34459373-34459392 None:intergenic 35.0%
TCTTACCATTATTGACACAC+CGG - chr8_1:34459452-34459471 Msa1191000:intron 35.0%
ATGATAAGTGATTCGACTGA+TGG - chr8_1:34459509-34459528 Msa1191000:intron 35.0%
CGACTGATGGTATGTTTAAT+TGG - chr8_1:34459522-34459541 Msa1191000:intron 35.0%
! GTTGAAGGAACAAGAGTATA+CGG + chr8_1:34459657-34459676 None:intergenic 35.0%
ATTCCACACTACTTTGTTGA+AGG + chr8_1:34459672-34459691 None:intergenic 35.0%
TTCAACAAAGTAGTGTGGAA+TGG - chr8_1:34459671-34459690 Msa1191000:intron 35.0%
AATAGAGTCTAACCACAAAG+AGG + chr8_1:34459701-34459720 None:intergenic 35.0%
AAATTGATCCCACGTTTAGA+CGG - chr8_1:34459725-34459744 Msa1191000:intron 35.0%
!! GTCTCAAGTTTGATTTTCTC+CGG - chr8_1:34460038-34460057 Msa1191000:CDS 35.0%
!! ATTTTCTCCGGTGTCAATTT+AGG - chr8_1:34460050-34460069 Msa1191000:CDS 35.0%
TACAAATGGATGTTCCATCA+GGG - chr8_1:34460707-34460726 Msa1191000:intron 35.0%
GAAAAACAACAGTAGAAGAG+CGG - chr8_1:34460774-34460793 Msa1191000:intron 35.0%
ACTATCGTTATCCAAGACTT+GGG + chr8_1:34461363-34461382 None:intergenic 35.0%
! CACAGAAGTTAATTTCTGGA+AGG + chr8_1:34461620-34461639 None:intergenic 35.0%
TCAGCTCTATCAGTATCTTA+GGG + chr8_1:34461737-34461756 None:intergenic 35.0%
TTCAGCTCTATCAGTATCTT+AGG + chr8_1:34461738-34461757 None:intergenic 35.0%
AAGATACTGATAGAGCTGAA+TGG - chr8_1:34461738-34461757 Msa1191000:CDS 35.0%
CCATGAAGATGGGATAAAAA+CGG - chr8_1:34461845-34461864 Msa1191000:intron 35.0%
CATGAAGATGGGATAAAAAC+GGG - chr8_1:34461846-34461865 Msa1191000:intron 35.0%
ATAAAAACGGGAAACATGGA+TGG - chr8_1:34461858-34461877 Msa1191000:intron 35.0%
!!! TAGGTTTTCATGCTGCTTTA+AGG - chr8_1:34461886-34461905 Msa1191000:intron 35.0%
AAGTTTCAACAAATTTCCCC+AGG - chr8_1:34462049-34462068 Msa1191000:CDS 35.0%
CTTGGAATATGCAATGACAT+GGG - chr8_1:34462299-34462318 Msa1191000:CDS 35.0%
TTGGAATATGCAATGACATG+GGG - chr8_1:34462300-34462319 Msa1191000:CDS 35.0%
CTCCCCATTTCCAAATAAAA+TGG + chr8_1:34462396-34462415 None:intergenic 35.0%
TCAGAAATCTGTTTATCAGC+TGG - chr8_1:34462434-34462453 Msa1191000:intron 35.0%
GTTACATCGACATTAAACTC+TGG - chr8_1:34462500-34462519 Msa1191000:intron 35.0%
AAATTTCCAGTTCCAGCTTT+AGG - chr8_1:34462617-34462636 Msa1191000:intron 35.0%
AATTTCCAGTTCCAGCTTTA+GGG - chr8_1:34462618-34462637 Msa1191000:intron 35.0%
TAAATTGCAACTGAAGGTGA+TGG + chr8_1:34462798-34462817 None:intergenic 35.0%
ACCTTCAGTTGCAATTTAAC+CGG - chr8_1:34462800-34462819 Msa1191000:CDS 35.0%
TTTGTTCGACAAGATAAGGT+TGG - chr8_1:34462876-34462895 Msa1191000:CDS 35.0%
TTATCATTAAGGGAGGATTG+AGG + chr8_1:34462973-34462992 None:intergenic 35.0%
!! CTTACTTTTCTTCAAGCTAC+TGG - chr8_1:34463015-34463034 Msa1191000:intron 35.0%
TGTGAACGATGAGAAATTCA+TGG - chr8_1:34463170-34463189 Msa1191000:CDS 35.0%
TGAACTCATTCAAGCAAGAA+TGG + chr8_1:34463272-34463291 None:intergenic 35.0%
ATGAGTTCAAAAACGTTGCT+CGG - chr8_1:34463283-34463302 Msa1191000:intron 35.0%
GATCTAGTAACTCTGATCAA+AGG + chr8_1:34463311-34463330 None:intergenic 35.0%
TTCAAAGCATAGCAAAACCA+TGG + chr8_1:34463343-34463362 None:intergenic 35.0%
CGCAATTCATGTCAACAAAT+TGG - chr8_1:34463390-34463409 Msa1191000:intron 35.0%
GGTGTAATACCAAATTACAG+AGG + chr8_1:34463429-34463448 None:intergenic 35.0%
CAGTGTTGCATTCTTTAGAT+GGG + chr8_1:34463450-34463469 None:intergenic 35.0%
! AGTCGGTAATCTGAAATTAG+AGG - chr8_1:34463527-34463546 Msa1191000:CDS 35.0%
CATGACATCTATCGATCATA+AGG + chr8_1:34463713-34463732 None:intergenic 35.0%
GATAGATGTCATGTAACCTT+TGG - chr8_1:34463720-34463739 Msa1191000:five_prime_UTR 35.0%
AGAGAAGAGAAGAGAAGAGA+GGG + chr8_1:34458797-34458816 None:intergenic 40.0%
AAGAGAAGAGAAGAGAAGAG+AGG + chr8_1:34458798-34458817 None:intergenic 40.0%
! TTCGAAGCGAGATTTGGAAT+CGG + chr8_1:34458904-34458923 None:intergenic 40.0%
AATGTCCGTGAAGTTGAGAT+GGG - chr8_1:34459053-34459072 Msa1191000:three_prime_UTR 40.0%
GCATTTGAAGAATAAGAGGG+CGG + chr8_1:34459085-34459104 None:intergenic 40.0%
GAGGAAGATTCAGAAGAGTA+TGG - chr8_1:34459297-34459316 Msa1191000:CDS 40.0%
! TTCAGAAGAGTATGGAAGTC+CGG - chr8_1:34459305-34459324 Msa1191000:CDS 40.0%
!! CTTAGGAGAAACTGCTGTTT+TGG + chr8_1:34459394-34459413 None:intergenic 40.0%
! GCTTTGAGTACAATTGGCTT+AGG + chr8_1:34459411-34459430 None:intergenic 40.0%
CTTACCATTATTGACACACC+GGG - chr8_1:34459453-34459472 Msa1191000:intron 40.0%
TTACCATTATTGACACACCG+GGG - chr8_1:34459454-34459473 Msa1191000:intron 40.0%
AATACCTTGAGAACAAACCC+CGG + chr8_1:34459474-34459493 None:intergenic 40.0%
! TTTTGTATCGTAGGCGAAGA+AGG - chr8_1:34459567-34459586 Msa1191000:intron 40.0%
TTTGTATCGTAGGCGAAGAA+GGG - chr8_1:34459568-34459587 Msa1191000:intron 40.0%
ACCATGGAAAGAATCTCATC+AGG + chr8_1:34459610-34459629 None:intergenic 40.0%
TCTTTCCATGGTGAAGACAT+TGG - chr8_1:34459618-34459637 Msa1191000:intron 40.0%
GTTCCTTCAACAAAGTAGTG+TGG - chr8_1:34459666-34459685 Msa1191000:intron 40.0%
ATGATTGTCCGTCTAAACGT+GGG + chr8_1:34459736-34459755 None:intergenic 40.0%
AATGATTGTCCGTCTAAACG+TGG + chr8_1:34459737-34459756 None:intergenic 40.0%
TCACTAATTGTAGCCTCACT+TGG - chr8_1:34459858-34459877 Msa1191000:intron 40.0%
TGATACATACCAAACCCACT+TGG - chr8_1:34459966-34459985 Msa1191000:intron 40.0%
GATACATACCAAACCCACTT+GGG - chr8_1:34459967-34459986 Msa1191000:intron 40.0%
TAGCACACCTAAATTGACAC+CGG + chr8_1:34460060-34460079 None:intergenic 40.0%
TGTAGGAATTTACTGATCGG+TGG - chr8_1:34460167-34460186 Msa1191000:CDS 40.0%
GTAGGAATTTACTGATCGGT+GGG - chr8_1:34460168-34460187 Msa1191000:CDS 40.0%
!!! CAACACTCGACCTTTTTTTG+TGG - chr8_1:34460231-34460250 Msa1191000:CDS 40.0%
TTTCAAATGAAGAGTTCCGC+AGG - chr8_1:34460278-34460297 Msa1191000:CDS 40.0%
CACTTGTGAACTTTCTGGAT+TGG - chr8_1:34460495-34460514 Msa1191000:CDS 40.0%
CAGATGAGAAATGTCTGAAG+TGG + chr8_1:34460536-34460555 None:intergenic 40.0%
CTTCAGACATTTCTCATCTG+AGG - chr8_1:34460536-34460555 Msa1191000:CDS 40.0%
AACTATGAATACCCACCACA+TGG + chr8_1:34460597-34460616 None:intergenic 40.0%
CTACAAATGGATGTTCCATC+AGG - chr8_1:34460706-34460725 Msa1191000:intron 40.0%
TAAAGACGAAGACTGGCATT+CGG + chr8_1:34460851-34460870 None:intergenic 40.0%
AATGCCAGTCTTCGTCTTTA+TGG - chr8_1:34460851-34460870 Msa1191000:intron 40.0%
AATATATTGCTTGCCCATGC+TGG - chr8_1:34461080-34461099 Msa1191000:intron 40.0%
TCACATGCAGTATCAAGAAG+AGG + chr8_1:34461179-34461198 None:intergenic 40.0%
!!! GACCGTCTTGCTTTTGTTTT+AGG - chr8_1:34461197-34461216 Msa1191000:intron 40.0%
TACATGCTGAATCATGCCTA+CGG + chr8_1:34461253-34461272 None:intergenic 40.0%
CTATCGTTATCCAAGACTTG+GGG + chr8_1:34461362-34461381 None:intergenic 40.0%
GACTATCGTTATCCAAGACT+TGG + chr8_1:34461364-34461383 None:intergenic 40.0%
TTTCTCAAACCCCATTGAGA+CGG + chr8_1:34461394-34461413 None:intergenic 40.0%
CAATGGGGTTTGAGAAATGT+AGG - chr8_1:34461397-34461416 Msa1191000:CDS 40.0%
!! CCGTTTTTATCCCATCTTCA+TGG + chr8_1:34461848-34461867 None:intergenic 40.0%
TGGGATAAAAACGGGAAACA+TGG - chr8_1:34461854-34461873 Msa1191000:intron 40.0%
!! CTTTAAGGTGTGCTTACACT+CGG - chr8_1:34461901-34461920 Msa1191000:intron 40.0%
TGCTTACACTCGGTTCTTAA+AGG - chr8_1:34461911-34461930 Msa1191000:intron 40.0%
!! ATGGACTGGTAACTGAATCA+AGG + chr8_1:34461974-34461993 None:intergenic 40.0%
AATGACTTTCAACCTTGTGC+CGG - chr8_1:34462014-34462033 Msa1191000:CDS 40.0%
! GAAACTTGAAGCGTTTATGC+CGG + chr8_1:34462036-34462055 None:intergenic 40.0%
ATTCTGCTTCCCATGATGTA+AGG - chr8_1:34462111-34462130 Msa1191000:CDS 40.0%
TTGATCCCTCCTTACATCAT+GGG + chr8_1:34462123-34462142 None:intergenic 40.0%
TTTCTATGCCCTCCATATAC+AGG + chr8_1:34462275-34462294 None:intergenic 40.0%
! TGTATATGGAGGGCATAGAA+AGG - chr8_1:34462274-34462293 Msa1191000:CDS 40.0%
GCTTGGAATATGCAATGACA+TGG - chr8_1:34462298-34462317 Msa1191000:CDS 40.0%
! TTTGCCATTTCCTGTCATTC+TGG + chr8_1:34462342-34462361 None:intergenic 40.0%
CGTGAAGTTCTTGTTGAAAG+AGG - chr8_1:34462476-34462495 Msa1191000:intron 40.0%
CACAAGATAGAAGCTTACCA+AGG + chr8_1:34462536-34462555 None:intergenic 40.0%
CGATCTTGGATGCTTAAAAG+TGG - chr8_1:34462580-34462599 Msa1191000:intron 40.0%
TTGGATGCTTAAAAGTGGCA+AGG - chr8_1:34462585-34462604 Msa1191000:intron 40.0%
! ATTTCCAGTTCCAGCTTTAG+GGG - chr8_1:34462619-34462638 Msa1191000:intron 40.0%
TCCGGTTAAATTGCAACTGA+AGG + chr8_1:34462804-34462823 None:intergenic 40.0%
AGCACAACAAGGTGGTATTA+TGG + chr8_1:34463097-34463116 None:intergenic 40.0%
TCAGAGTTACTAGATCTCCA+AGG - chr8_1:34463315-34463334 Msa1191000:intron 40.0%
GTTGACATGAATTGCGTCAT+AGG + chr8_1:34463386-34463405 None:intergenic 40.0%
CCAGTGTTGCATTCTTTAGA+TGG + chr8_1:34463451-34463470 None:intergenic 40.0%
CCATCTAAAGAATGCAACAC+TGG - chr8_1:34463448-34463467 Msa1191000:CDS 40.0%
ATTCAGCAGGTAAGTGAATG+TGG + chr8_1:34463577-34463596 None:intergenic 40.0%
TTTGATCATCAGCATTCAGC+AGG + chr8_1:34463590-34463609 None:intergenic 40.0%
AGAAGAGAAGAGAGGGGAAA+AGG + chr8_1:34458790-34458809 None:intergenic 45.0%
GAGAAGAGAAGAGAAGAGAG+GGG + chr8_1:34458796-34458815 None:intergenic 45.0%
! AATCGGAGTGCTTTCTTGAC+CGG + chr8_1:34458887-34458906 None:intergenic 45.0%
GTAAGCTTCGAAGCGAGATT+TGG + chr8_1:34458910-34458929 None:intergenic 45.0%
ACGGCAACAATTTCAGGGAT+GGG + chr8_1:34458975-34458994 None:intergenic 45.0%
AACGGCAACAATTTCAGGGA+TGG + chr8_1:34458976-34458995 None:intergenic 45.0%
ATCCCTGAAATTGTTGCCGT+TGG - chr8_1:34458975-34458994 Msa1191000:three_prime_UTR 45.0%
CACCAACGGCAACAATTTCA+GGG + chr8_1:34458980-34458999 None:intergenic 45.0%
CAATGTCCGTGAAGTTGAGA+TGG - chr8_1:34459052-34459071 Msa1191000:three_prime_UTR 45.0%
GAGTACCCATCTCAACTTCA+CGG + chr8_1:34459061-34459080 None:intergenic 45.0%
CTAACACGTTGACACGATGT+TGG + chr8_1:34459171-34459190 None:intergenic 45.0%
AAACCCCGGTGTGTCAATAA+TGG + chr8_1:34459460-34459479 None:intergenic 45.0%
GCCTGATGAGATTCTTTCCA+TGG - chr8_1:34459606-34459625 Msa1191000:intron 45.0%
AGTAGCCAATGTCTTCACCA+TGG + chr8_1:34459626-34459645 None:intergenic 45.0%
! AACAAGAGTATACGGTGTGG+AGG + chr8_1:34459649-34459668 None:intergenic 45.0%
! AGGAACAAGAGTATACGGTG+TGG + chr8_1:34459652-34459671 None:intergenic 45.0%
ATTTACTGATCGGTGGGAAG+TGG - chr8_1:34460174-34460193 Msa1191000:CDS 45.0%
GATCGCTATTTGAGTGCAAG+TGG - chr8_1:34460196-34460215 Msa1191000:CDS 45.0%
TTGAGTGCAAGTGGTTACCT+TGG - chr8_1:34460205-34460224 Msa1191000:CDS 45.0%
TTAGGCAGGGCCACAAAAAA+AGG + chr8_1:34460244-34460263 None:intergenic 45.0%
!!! TTTTTTTGTGGCCCTGCCTA+AGG - chr8_1:34460243-34460262 Msa1191000:CDS 45.0%
GAAATGTTGCCCCTATCCTT+AGG + chr8_1:34460262-34460281 None:intergenic 45.0%
CAGACGGCCAAAACCAATAT+AGG + chr8_1:34460386-34460405 None:intergenic 45.0%
!!! ATATTGGTTTTGGCCGTCTG+AGG - chr8_1:34460386-34460405 Msa1191000:CDS 45.0%
!!! TATTGGTTTTGGCCGTCTGA+GGG - chr8_1:34460387-34460406 Msa1191000:CDS 45.0%
ACTCCAAGTAATCCCTCAGA+CGG + chr8_1:34460402-34460421 None:intergenic 45.0%
TCAAGCAAGGCAAGAGTTGA+TGG + chr8_1:34460457-34460476 None:intergenic 45.0%
ACTACACCTTTGCTCAAGCA+AGG + chr8_1:34460470-34460489 None:intergenic 45.0%
GAGGTCACTTGTGAACTTTC+TGG - chr8_1:34460490-34460509 Msa1191000:CDS 45.0%
AGCTTCTATCAGCAACCATG+TGG - chr8_1:34460579-34460598 Msa1191000:CDS 45.0%
TTCTATCAGCAACCATGTGG+TGG - chr8_1:34460582-34460601 Msa1191000:CDS 45.0%
TCTATCAGCAACCATGTGGT+GGG - chr8_1:34460583-34460602 Msa1191000:CDS 45.0%
ATCTGCTGCACCATCAATCA+AGG + chr8_1:34460735-34460754 None:intergenic 45.0%
!! TTGTTTTTCCCCACTGCTCA+GGG + chr8_1:34460763-34460782 None:intergenic 45.0%
! CTCAAAGTGGCATTGGGATT+TGG - chr8_1:34460798-34460817 Msa1191000:intron 45.0%
AAAGACGAAGACTGGCATTC+GGG + chr8_1:34460850-34460869 None:intergenic 45.0%
CCAGTCTTCGTCTTTATGGA+GGG - chr8_1:34460855-34460874 Msa1191000:intron 45.0%
CAGTCTTCGTCTTTATGGAG+GGG - chr8_1:34460856-34460875 Msa1191000:intron 45.0%
! TCACCTTTTCCCTTGAGACT+GGG + chr8_1:34460940-34460959 None:intergenic 45.0%
! ATCACCTTTTCCCTTGAGAC+TGG + chr8_1:34460941-34460960 None:intergenic 45.0%
!! TGGCTCTAGAAAGAAACCGT+AGG - chr8_1:34461234-34461253 Msa1191000:intron 45.0%
TTCTCAAACCCCATTGAGAC+GGG + chr8_1:34461393-34461412 None:intergenic 45.0%
GGAAACATGGATGGCTATGT+AGG - chr8_1:34461867-34461886 Msa1191000:intron 45.0%
GACTGGTAACTGAATCAAGG+TGG + chr8_1:34461971-34461990 None:intergenic 45.0%
AGTTACCAGTCCATACTCAC+AGG - chr8_1:34461980-34461999 Msa1191000:CDS 45.0%
AAGTAGCAGACCTGTGAGTA+TGG + chr8_1:34461993-34462012 None:intergenic 45.0%
AAATGAAGAGGCTGAAGCCT+GGG + chr8_1:34462069-34462088 None:intergenic 45.0%
AAAATGAAGAGGCTGAAGCC+TGG + chr8_1:34462070-34462089 None:intergenic 45.0%
TGCTTCCCATGATGTAAGGA+GGG - chr8_1:34462115-34462134 Msa1191000:CDS 45.0%
CTTGATCCCTCCTTACATCA+TGG + chr8_1:34462124-34462143 None:intergenic 45.0%
ACCTCCAGAAAAGAATGCAC+TGG - chr8_1:34462151-34462170 Msa1191000:CDS 45.0%
! TCCAGTGCATTCTTTTCTGG+AGG + chr8_1:34462155-34462174 None:intergenic 45.0%
TCCAGAAAAGAATGCACTGG+AGG - chr8_1:34462154-34462173 Msa1191000:CDS 45.0%
! TCCTCCAGTGCATTCTTTTC+TGG + chr8_1:34462158-34462177 None:intergenic 45.0%
CAGGTGATCCTGTATATGGA+GGG - chr8_1:34462264-34462283 Msa1191000:CDS 45.0%
ATTCTGGACGCTCTCTTTCT+TGG + chr8_1:34462326-34462345 None:intergenic 45.0%
TTTGGAAATGGGGAGAGAAC+AGG - chr8_1:34462401-34462420 Msa1191000:intron 45.0%
TAGAAGCTTACCAAGGAGTC+AGG + chr8_1:34462529-34462548 None:intergenic 45.0%
CACAAACAAGCACAACAAGG+TGG + chr8_1:34463105-34463124 None:intergenic 45.0%
CTGCACAAACAAGCACAACA+AGG + chr8_1:34463108-34463127 None:intergenic 45.0%
TGTAGAACATCTATGGCACC+AGG + chr8_1:34463210-34463229 None:intergenic 45.0%
ATAGCAAAACCATGGCTCCT+TGG + chr8_1:34463335-34463354 None:intergenic 45.0%
TGACGAGACCCTCTGTAATT+TGG - chr8_1:34463417-34463436 Msa1191000:CDS 45.0%
TTACACATGCTTCAACACGC+AGG + chr8_1:34463489-34463508 None:intergenic 45.0%
!!! ATTTAATTTAATTTATTTTC+TGG - chr8_1:34462844-34462863 Msa1191000:CDS 5.0%
AGAAGAGAGGGGAAAAGGAG+GGG + chr8_1:34458785-34458804 None:intergenic 50.0%
GAGAAGAGAGGGGAAAAGGA+GGG + chr8_1:34458786-34458805 None:intergenic 50.0%
AGAGAAGAGAGGGGAAAAGG+AGG + chr8_1:34458787-34458806 None:intergenic 50.0%
!! GACATGGTGGGTGGTAAGTA+AGG + chr8_1:34458825-34458844 None:intergenic 50.0%
GATGTGGATGGGGTCTTTGT+GGG + chr8_1:34458861-34458880 None:intergenic 50.0%
! ATCGGAGTGCTTTCTTGACC+GGG + chr8_1:34458886-34458905 None:intergenic 50.0%
CGGCAACAATTTCAGGGATG+GGG + chr8_1:34458974-34458993 None:intergenic 50.0%
CCACCAACGGCAACAATTTC+AGG + chr8_1:34458981-34459000 None:intergenic 50.0%
CCTGAAATTGTTGCCGTTGG+TGG - chr8_1:34458978-34458997 Msa1191000:three_prime_UTR 50.0%
! TCCATCAGATTGGCCACCAA+CGG + chr8_1:34458994-34459013 None:intergenic 50.0%
GGGAGCTCTTTCCATCAGAT+TGG + chr8_1:34459004-34459023 None:intergenic 50.0%
GGACATTGAAGCGAAAACCG+AGG + chr8_1:34459040-34459059 None:intergenic 50.0%
! AGAAGAGTATGGAAGTCCGG+TGG - chr8_1:34459308-34459327 Msa1191000:CDS 50.0%
GTATGGAAGTCCGGTGGTTT+CGG - chr8_1:34459314-34459333 Msa1191000:CDS 50.0%
ATCGTAGATGCCGAAACCAC+CGG + chr8_1:34459327-34459346 None:intergenic 50.0%
ATCTCATCAGGCGTGTTCTC+CGG + chr8_1:34459598-34459617 None:intergenic 50.0%
TGGAATGGTGCTCCTCTTTG+TGG - chr8_1:34459686-34459705 Msa1191000:intron 50.0%
CATACCAAACCCACTTGGGT+TGG - chr8_1:34459971-34459990 Msa1191000:intron 50.0%
! CTTGAGAAGAGCACACTCCA+AGG + chr8_1:34460018-34460037 None:intergenic 50.0%
CTTGGAGTGTGCTCTTCTCA+AGG - chr8_1:34460016-34460035 Msa1191000:intron 50.0%
! AAGGTCGAGTGTTGTCTCCA+AGG + chr8_1:34460225-34460244 None:intergenic 50.0%
GCAGATCTCTCATGTGGACT+CGG - chr8_1:34460300-34460319 Msa1191000:CDS 50.0%
GTTATGCATCATCTCCGCGA+TGG - chr8_1:34460325-34460344 Msa1191000:CDS 50.0%
CTCTTGCCTTGCTTGAGCAA+AGG - chr8_1:34460461-34460480 Msa1191000:CDS 50.0%
! GCTTGAGCAAAGGTGTAGTG+AGG - chr8_1:34460471-34460490 Msa1191000:CDS 50.0%
! CATCAATCAAGGCACCCTGA+TGG + chr8_1:34460724-34460743 None:intergenic 50.0%
! CATCAGGGTGCCTTGATTGA+TGG - chr8_1:34460722-34460741 Msa1191000:intron 50.0%
! TGTTTTTCCCCACTGCTCAG+GGG + chr8_1:34460762-34460781 None:intergenic 50.0%
!!! GTTGTTTTTCCCCACTGCTC+AGG + chr8_1:34460764-34460783 None:intergenic 50.0%
GTAGAAGAGCGGTCTCAAAG+TGG - chr8_1:34460785-34460804 Msa1191000:intron 50.0%
AGCGGTCTCAAAGTGGCATT+GGG - chr8_1:34460792-34460811 Msa1191000:intron 50.0%
TTCACATCGGTGATGACACC+AGG + chr8_1:34460824-34460843 None:intergenic 50.0%
AAGACGAAGACTGGCATTCG+GGG + chr8_1:34460849-34460868 None:intergenic 50.0%
GCCAGTCTTCGTCTTTATGG+AGG - chr8_1:34460854-34460873 Msa1191000:intron 50.0%
CCCTCCATAAAGACGAAGAC+TGG + chr8_1:34460858-34460877 None:intergenic 50.0%
! ACCTTTTCCCTTGAGACTGG+GGG + chr8_1:34460938-34460957 None:intergenic 50.0%
! CACCTTTTCCCTTGAGACTG+GGG + chr8_1:34460939-34460958 None:intergenic 50.0%
! GACAGAAGGGTATGTCAGCA+AGG + chr8_1:34461289-34461308 None:intergenic 50.0%
AGTCTCATACCCCGTCTCAA+TGG - chr8_1:34461380-34461399 Msa1191000:CDS 50.0%
GTCTCATACCCCGTCTCAAT+GGG - chr8_1:34461381-34461400 Msa1191000:CDS 50.0%
TCTCATACCCCGTCTCAATG+GGG - chr8_1:34461382-34461401 Msa1191000:CDS 50.0%
TCTCAAACCCCATTGAGACG+GGG + chr8_1:34461392-34461411 None:intergenic 50.0%
! AGCAGTGCAAGCAGCTTGTT+AGG - chr8_1:34461943-34461962 Msa1191000:intron 50.0%
AATGAAGAGGCTGAAGCCTG+GGG + chr8_1:34462068-34462087 None:intergenic 50.0%
CTGCTTCCCATGATGTAAGG+AGG - chr8_1:34462114-34462133 Msa1191000:CDS 50.0%
CAGCCAGGTGATCCTGTATA+TGG - chr8_1:34462260-34462279 Msa1191000:CDS 50.0%
CCTCCATATACAGGATCACC+TGG + chr8_1:34462266-34462285 None:intergenic 50.0%
CCAGGTGATCCTGTATATGG+AGG - chr8_1:34462263-34462282 Msa1191000:CDS 50.0%
!! AAGAGAGCGTCCAGAATGAC+AGG - chr8_1:34462329-34462348 Msa1191000:CDS 50.0%
GCGTCCAGAATGACAGGAAA+TGG - chr8_1:34462335-34462354 Msa1191000:CDS 50.0%
CACGTATACGTGCGAAATGC+TGG + chr8_1:34462460-34462479 None:intergenic 50.0%
ACTCTGGATTCCTGACTCCT+TGG - chr8_1:34462516-34462535 Msa1191000:intron 50.0%
CAATATAGCGCCCCTAAAGC+TGG + chr8_1:34462632-34462651 None:intergenic 50.0%
ATGGACATGTTTGTCGCTCC+TGG - chr8_1:34463189-34463208 Msa1191000:CDS 50.0%
ACTAGATCTCCAAGGAGCCA+TGG - chr8_1:34463323-34463342 Msa1191000:intron 50.0%
GAAGAGAGGGGAAAAGGAGG+GGG + chr8_1:34458784-34458803 None:intergenic 55.0%
!! GTGGTGGTGGATGACATGGT+GGG + chr8_1:34458837-34458856 None:intergenic 55.0%
!! AGTGGTGGTGGATGACATGG+TGG + chr8_1:34458838-34458857 None:intergenic 55.0%
GGATGTGGATGGGGTCTTTG+TGG + chr8_1:34458862-34458881 None:intergenic 55.0%
TTGACCGGGTGGATGTGGAT+GGG + chr8_1:34458872-34458891 None:intergenic 55.0%
CTTTCTTGACCGGGTGGATG+TGG + chr8_1:34458877-34458896 None:intergenic 55.0%
! TCCCTTCTCGAAGCACTCCT+CGG - chr8_1:34459020-34459039 Msa1191000:three_prime_UTR 55.0%
!! ACCGAGGAGTGCTTCGAGAA+GGG + chr8_1:34459024-34459043 None:intergenic 55.0%
!! AACCGAGGAGTGCTTCGAGA+AGG + chr8_1:34459025-34459044 None:intergenic 55.0%
CAACGAGGTTCAAGAGCGGA+GGG + chr8_1:34459116-34459135 None:intergenic 55.0%
TTTACCTGGAAGCGGCAACG+AGG + chr8_1:34459131-34459150 None:intergenic 55.0%
! CACACCGGGGTTTGTTCTCA+AGG - chr8_1:34459467-34459486 Msa1191000:intron 55.0%
GTAGGCGAAGAAGGGTGAAC+CGG - chr8_1:34459576-34459595 Msa1191000:intron 55.0%
TTGTGGCCCTGCCTAAGGAT+AGG - chr8_1:34460248-34460267 Msa1191000:CDS 55.0%
TGTGGCCCTGCCTAAGGATA+GGG - chr8_1:34460249-34460268 Msa1191000:CDS 55.0%
GTTGCCCCTATCCTTAGGCA+GGG + chr8_1:34460257-34460276 None:intergenic 55.0%
TGTTGCCCCTATCCTTAGGC+AGG + chr8_1:34460258-34460277 None:intergenic 55.0%
CCACATGAGAGATCTGCCTG+CGG + chr8_1:34460297-34460316 None:intergenic 55.0%
GATCTCTCATGTGGACTCGG+AGG - chr8_1:34460303-34460322 Msa1191000:CDS 55.0%
! TCATCTCCGCGATGGTGTCA+AGG - chr8_1:34460333-34460352 Msa1191000:CDS 55.0%
! CATCTCCGCGATGGTGTCAA+GGG - chr8_1:34460334-34460353 Msa1191000:CDS 55.0%
AACCTCCCTTGACACCATCG+CGG + chr8_1:34460342-34460361 None:intergenic 55.0%
TGGCCGTCTGAGGGATTACT+TGG - chr8_1:34460396-34460415 Msa1191000:CDS 55.0%
AGATCCTTCCCCTGAGCAGT+GGG - chr8_1:34460751-34460770 Msa1191000:intron 55.0%
GAGCGGTCTCAAAGTGGCAT+TGG - chr8_1:34460791-34460810 Msa1191000:intron 55.0%
! AGTGGCATTGGGATTTGGCC+TGG - chr8_1:34460803-34460822 Msa1191000:intron 55.0%
AGACGAAGACTGGCATTCGG+GGG + chr8_1:34460848-34460867 None:intergenic 55.0%
ATGGAGGGGCTGCATTTGAG+AGG - chr8_1:34460870-34460889 Msa1191000:intron 55.0%
TGGAGGGGCTGCATTTGAGA+GGG - chr8_1:34460871-34460890 Msa1191000:intron 55.0%
!! TGAGACTGGGGGGCATTCAA+TGG + chr8_1:34460927-34460946 None:intergenic 55.0%
TTGAATGCCCCCCAGTCTCA+AGG - chr8_1:34460927-34460946 Msa1191000:intron 55.0%
TGAATGCCCCCCAGTCTCAA+GGG - chr8_1:34460928-34460947 Msa1191000:intron 55.0%
! CCTTTTCCCTTGAGACTGGG+GGG + chr8_1:34460937-34460956 None:intergenic 55.0%
TTAGTCCTCTTCCCCCACCT+CGG + chr8_1:34461106-34461125 None:intergenic 55.0%
TGGGGGAAGAGGACTAACAG+AGG - chr8_1:34461109-34461128 Msa1191000:intron 55.0%
! CACGTGCTGCTGCTAGATCA+TGG - chr8_1:34461147-34461166 Msa1191000:intron 55.0%
GCAGACCTGTGAGTATGGAC+TGG + chr8_1:34461988-34462007 None:intergenic 55.0%
! GAAGCGTTTATGCCGGCACA+AGG + chr8_1:34462029-34462048 None:intergenic 55.0%
GCACTGGAGGAAACAACACC+AGG - chr8_1:34462167-34462186 Msa1191000:CDS 55.0%
!! CGAACGTGTGCTGCTTTACC+TGG + chr8_1:34462188-34462207 None:intergenic 55.0%
GGGTCTCAGGGATAGTCATC+TGG + chr8_1:34462229-34462248 None:intergenic 55.0%
GATCAGGAGATGGGGTCTCA+GGG + chr8_1:34462241-34462260 None:intergenic 55.0%
TGATCAGGAGATGGGGTCTC+AGG + chr8_1:34462242-34462261 None:intergenic 55.0%
ACCTGGCTGATCAGGAGATG+GGG + chr8_1:34462249-34462268 None:intergenic 55.0%
CACCTGGCTGATCAGGAGAT+GGG + chr8_1:34462250-34462269 None:intergenic 55.0%
TCACCTGGCTGATCAGGAGA+TGG + chr8_1:34462251-34462270 None:intergenic 55.0%
ACAGGATCACCTGGCTGATC+AGG + chr8_1:34462257-34462276 None:intergenic 55.0%
! GGAGGGCATAGAAAGGAGCT+TGG - chr8_1:34462281-34462300 Msa1191000:CDS 55.0%
! GATCGCCTTGTTGTGGCTCT+CGG - chr8_1:34463132-34463151 Msa1191000:CDS 55.0%
! ATCGCCTTGTTGTGGCTCTC+GGG - chr8_1:34463133-34463152 Msa1191000:CDS 55.0%
!! GTGGTGGATGACATGGTGGG+TGG + chr8_1:34458834-34458853 None:intergenic 60.0%
!! GGGAGTGGTGGTGGATGACA+TGG + chr8_1:34458841-34458860 None:intergenic 60.0%
GGTCTTTGTGGGAGTGGTGG+TGG + chr8_1:34458850-34458869 None:intergenic 60.0%
TGGGGTCTTTGTGGGAGTGG+TGG + chr8_1:34458853-34458872 None:intergenic 60.0%
GGATGGGGTCTTTGTGGGAG+TGG + chr8_1:34458856-34458875 None:intergenic 60.0%
AGACCCCATCCACATCCACC+CGG - chr8_1:34458865-34458884 Msa1191000:three_prime_UTR 60.0%
TGACCGGGTGGATGTGGATG+GGG + chr8_1:34458871-34458890 None:intergenic 60.0%
CTTGACCGGGTGGATGTGGA+TGG + chr8_1:34458873-34458892 None:intergenic 60.0%
! GGAGTGCTTTCTTGACCGGG+TGG + chr8_1:34458883-34458902 None:intergenic 60.0%
!! CAAGCCGCTGCTGTCGCTTT+CGG - chr8_1:34458939-34458958 Msa1191000:three_prime_UTR 60.0%
!! GCCGTTGGTGGCCAATCTGA+TGG - chr8_1:34458990-34459009 Msa1191000:three_prime_UTR 60.0%
GCAACGAGGTTCAAGAGCGG+AGG + chr8_1:34459117-34459136 None:intergenic 60.0%
GCGGCAACGAGGTTCAAGAG+CGG + chr8_1:34459120-34459139 None:intergenic 60.0%
! TGAACCTCGTTGCCGCTTCC+AGG - chr8_1:34459124-34459143 Msa1191000:three_prime_UTR 60.0%
! CAGGCCAACCCAAGTGGGTT+TGG + chr8_1:34459978-34459997 None:intergenic 60.0%
!! CAAACCCACTTGGGTTGGCC+TGG - chr8_1:34459976-34459995 Msa1191000:intron 60.0%
ACCACCAGGCCAACCCAAGT+GGG + chr8_1:34459983-34460002 None:intergenic 60.0%
!! TTGGGTTGGCCTGGTGGTGT+TGG - chr8_1:34459985-34460004 Msa1191000:intron 60.0%
!! TTGGCCTGGTGGTGTTGGCT+TGG - chr8_1:34459990-34460009 Msa1191000:intron 60.0%
!! TGGCCTGGTGGTGTTGGCTT+GGG - chr8_1:34459991-34460010 Msa1191000:intron 60.0%
!! GTGGTGTTGGCTTGGGACCT+TGG - chr8_1:34459998-34460017 Msa1191000:intron 60.0%
GTGGCCCTGCCTAAGGATAG+GGG - chr8_1:34460250-34460269 Msa1191000:CDS 60.0%
CCGCAGGCAGATCTCTCATG+TGG - chr8_1:34460294-34460313 Msa1191000:CDS 60.0%
CAGATCCTTCCCCTGAGCAG+TGG - chr8_1:34460750-34460769 Msa1191000:intron 60.0%
GATCCTTCCCCTGAGCAGTG+GGG - chr8_1:34460752-34460771 Msa1191000:intron 60.0%
TTTCCCCACTGCTCAGGGGA+AGG + chr8_1:34460758-34460777 None:intergenic 60.0%
GGCATTCGGGGGGTTCACAT+CGG + chr8_1:34460837-34460856 None:intergenic 60.0%
GACGAAGACTGGCATTCGGG+GGG + chr8_1:34460847-34460866 None:intergenic 60.0%
CCCCCCAGTCTCAAGGGAAA+AGG - chr8_1:34460934-34460953 Msa1191000:intron 60.0%
ACCCCATCTCCTGATCAGCC+AGG - chr8_1:34462245-34462264 Msa1191000:CDS 60.0%
AGCGCCCCTAAAGCTGGAAC+TGG + chr8_1:34462626-34462645 None:intergenic 60.0%
GAGCCACAACAAGGCGATCG+CGG + chr8_1:34463131-34463150 None:intergenic 60.0%
CCAACCCGAGAGCCACAACA+AGG + chr8_1:34463140-34463159 None:intergenic 60.0%
! CCTTGTTGTGGCTCTCGGGT+TGG - chr8_1:34463137-34463156 Msa1191000:CDS 60.0%
! CGACAGCAGCGGCTTGGAGA+CGG + chr8_1:34458935-34458954 None:intergenic 65.0%
CGAAAGCGACAGCAGCGGCT+TGG + chr8_1:34458941-34458960 None:intergenic 65.0%
CTCGCCGAAAGCGACAGCAG+CGG + chr8_1:34458946-34458965 None:intergenic 65.0%
CGGACAATCGCGGCCAAGTG+AGG + chr8_1:34459874-34459893 None:intergenic 65.0%
!! ACCCACTTGGGTTGGCCTGG+TGG - chr8_1:34459979-34459998 Msa1191000:intron 65.0%
CACCACCAGGCCAACCCAAG+TGG + chr8_1:34459984-34460003 None:intergenic 65.0%
GGTCCCAAGCCAACACCACC+AGG + chr8_1:34459997-34460016 None:intergenic 65.0%
! CTCCGCGATGGTGTCAAGGG+AGG - chr8_1:34460337-34460356 Msa1191000:CDS 65.0%
TTGCTTGCCCATGCTGGCCG+AGG - chr8_1:34461086-34461105 Msa1191000:intron 65.0%
TTGCCCATGCTGGCCGAGGT+GGG - chr8_1:34461090-34461109 Msa1191000:intron 65.0%
! CAGCCGCGATCGCCTTGTTG+TGG - chr8_1:34463125-34463144 Msa1191000:CDS 65.0%
CTTGCCCATGCTGGCCGAGG+TGG - chr8_1:34461089-34461108 Msa1191000:intron 70.0%
TGCCCATGCTGGCCGAGGTG+GGG - chr8_1:34461091-34461110 Msa1191000:intron 70.0%
TCCCCCACCTCGGCCAGCAT+GGG + chr8_1:34461096-34461115 None:intergenic 70.0%
TTCCCCCACCTCGGCCAGCA+TGG + chr8_1:34461097-34461116 None:intergenic 70.0%
GCCCATGCTGGCCGAGGTGG+GGG - chr8_1:34461092-34461111 Msa1191000:intron 75.0%
GCTGGCCGAGGTGGGGGAAG+AGG - chr8_1:34461098-34461117 Msa1191000:intron 75.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 34458761 34463797 34458761 ID=Msa1191000;Name=Msa1191000
chr8_1 mRNA 34458761 34463797 34458761 ID=Msa1191000-mRNA-1;Parent=Msa1191000;Name=Msa1191000-mRNA-1;_AED=0.06;_eAED=0.06;_QI=79|1|1|1|1|1|8|483|809
chr8_1 exon 34458761 34459430 34458761 ID=Msa1191000-mRNA-1:exon:11552;Parent=Msa1191000-mRNA-1
chr8_1 exon 34460021 34460705 34460021 ID=Msa1191000-mRNA-1:exon:11551;Parent=Msa1191000-mRNA-1
chr8_1 exon 34461289 34461484 34461289 ID=Msa1191000-mRNA-1:exon:11550;Parent=Msa1191000-mRNA-1
chr8_1 exon 34461603 34461830 34461603 ID=Msa1191000-mRNA-1:exon:11549;Parent=Msa1191000-mRNA-1
chr8_1 exon 34461958 34462386 34461958 ID=Msa1191000-mRNA-1:exon:11548;Parent=Msa1191000-mRNA-1
chr8_1 exon 34462772 34462978 34462772 ID=Msa1191000-mRNA-1:exon:11547;Parent=Msa1191000-mRNA-1
chr8_1 exon 34463070 34463261 34463070 ID=Msa1191000-mRNA-1:exon:11546;Parent=Msa1191000-mRNA-1
chr8_1 exon 34463413 34463797 34463413 ID=Msa1191000-mRNA-1:exon:11545;Parent=Msa1191000-mRNA-1
chr8_1 five_prime_UTR 34463719 34463797 34463719 ID=Msa1191000-mRNA-1:five_prime_utr;Parent=Msa1191000-mRNA-1
chr8_1 CDS 34463413 34463718 34463413 ID=Msa1191000-mRNA-1:cds;Parent=Msa1191000-mRNA-1
chr8_1 CDS 34463070 34463261 34463070 ID=Msa1191000-mRNA-1:cds;Parent=Msa1191000-mRNA-1
chr8_1 CDS 34462772 34462978 34462772 ID=Msa1191000-mRNA-1:cds;Parent=Msa1191000-mRNA-1
chr8_1 CDS 34461958 34462386 34461958 ID=Msa1191000-mRNA-1:cds;Parent=Msa1191000-mRNA-1
chr8_1 CDS 34461603 34461830 34461603 ID=Msa1191000-mRNA-1:cds;Parent=Msa1191000-mRNA-1
chr8_1 CDS 34461289 34461484 34461289 ID=Msa1191000-mRNA-1:cds;Parent=Msa1191000-mRNA-1
chr8_1 CDS 34460021 34460705 34460021 ID=Msa1191000-mRNA-1:cds;Parent=Msa1191000-mRNA-1
chr8_1 CDS 34459244 34459430 34459244 ID=Msa1191000-mRNA-1:cds;Parent=Msa1191000-mRNA-1
chr8_1 three_prime_UTR 34458761 34459243 34458761 ID=Msa1191000-mRNA-1:three_prime_utr;Parent=Msa1191000-mRNA-1
Gene Sequence

>Msa1191000

ATGTCATCCACCACCACTCCCACAAAGACCCCATCCACATCCACCCGGTCAAGAAAGCACTCCGATTCCAAATCTCGCTTCGAAGCTTACAACCGTCTCCAAGCCGCTGCTGTCGCTTTCGGCGAGACTCTCCCCATCCCTGAAATTGTTGCCGTTGGTGGCCAATCTGATGGAAAGAGCTCCCTTCTCGAAGCACTCCTCGGTTTTCGCTTCAATGTCCGTGAAGTTGAGATGGGTACTCGCCGCCCTCTTATTCTTCAAATGCTTCACGATCCCTCCGCTCTTGAACCTCGTTGCCGCTTCCAGGAGGAAGATTCAGAAGAGTATGGAAGTCCGGTGGTTTCGGCATCTACGATTGCTGACATTATAAAGTCTCGAACCGAAGCACTTTTGAAGATAACCAAAACAGCAGTTTCTCCTAAGCCAATTGTACTCAAAGCTGAATACGCACACTGTCCAAATCTTACCATTATTGACACACCGGGGTTTGTTCTCAAGGCGAAGAAGGGTGAACCGGAGAACACGCCTGATGAGATTCTTTCCATGGTGAAGACATTGGCTACTCCTCCACACCGTATACTCTTGTTCCTTCAACAAAGTAGTGTGGAATGGTGCTCCTCTTTGTGGTTAGACTCTATTCGTGAAATTGATCCCACGTTTAGACGGACAATCATTGTTGTCTCCAAATTTGATAATCGTCTCAAGGAATTTACTGATCGGTGGGAAGTGGATCGCTATTTGAGTGCAAGTGGTTACCTTGGAGACAACACTCGACCTTTTTTTGTGGCCCTGCCTAAGGATAGGGGCAACATTTCAAATGAAGAGTTCCGCAGGCAGATCTCTCATGTGGACTCGGAGGTTATGCATCATCTCCGCGATGGTGTCAAGGGAGGTTTTGATGAAGAAAAGTTCAAGTCCTATATTGGTTTTGGCCGTCTGAGGGATTACTTGGAGTCTGAGCTTCAGAAGAAATACAAAGAAGCTGCTCCATCAACTCTTGCCTTGCTTGAGCAAAGGTGTAGTGAGGTCACTTGTGAACTTTCTGGATTGGATTCAAAAATTGAGGCCACTTCAGACATTTCTCATCTGAGGAAATTTGCAATGCTGTGTGCAGCTTCTATCAGCAACCATGTGGGTGCCTTGATTGATGGTGCAGCAGATCCTTCCCCTGAGCAGTGGGGAAAAACAACAGTAGAAGAGCGGTCTCAAAGTGGCATTGGGATTTGGCCTGGTGTCATCACCGATGTGAACCCCCCGAATGCCAGTCTTCGTCTTTATGGAGGGGCTGCATTTGAGAGGGTGATGCATGAATTTCGCTGTGCTGCATATTCCATTGAATGCCCCCCAGTCTCAAGGGAAAAGGTTGCAAATATATTGCTTGCCCATGCTGGCCGAGGTGGGGGAAGAGGACTAACAGAGGCTGCTGCAGAGATTGCACGTGCTGCTGCTAGATCATGGCTTGCTCCTCTTCTTGATACTGCATGTGACCGTCTTGCTTTTGTTTTAGGAAGCTTATTTGATTTGGCTCTAGAAAGAAACCGTAGGCATGATTCAGCATATGGGATAAAAACGGGAAACATGGATGGCTATGTAGGTTTTCATGCTGCTTTAAGGTGTGCTTACACTCGGTTCTTAAAGGATCTTGCTAAGCAGTGCAAGCAGCTTGTTAGGCACCACCTTGATTCAGTTACCAGTCCATACTCACAGGTCTGCTACTTCAATGACTTTCAACCTTGTGCCGGCATAAACGCTTCAAGTTTCAACAAATTTCCCCAGGCTTCAGCCTCTTCATTTTTTCTTGAATTGAGTGATACAAATTCTGCTTCCCATGATGTAAGGAGGGATCAAGAAAATATACCTCCAGAAAAGAATGCACTGGAGGAAACAACACCAGGTAAAGCAGCACACGTTCGAGAGAGTTTGCGAGAAAGCCAGATGACTATCCCTGAGACCCCATCTCCTGATCAGCCAGGTGATCCTGTATATGGAGGGCATAGAAAGGAGCTTGGAATATGCAATGACATGGGGCCAAGAAAGAGAGCGTCCAGAATGACAGGAAATGGCAAAAATTCTGACTATATTAGACTTCAAAATGATTCCATTTTATTTGGAAATGGGGAGAGAACAGGATCAGCGTACTCAGAAATCTGTTTATCAGCTGGCCAGCATTTCGCACGTATACGTGAAGTTCTTGTTGAAAGAGGTGTTACATCGACATTAAACTCTGGATTCCTGACTCCTTGCCGCGATCGCCTTGTTGTGGCTCTCGGGTTGGATTTATTTGCTGTGAACGATGAGAAATTCATGGACATGTTTGTCGCTCCTGGTGCCATAGATGTTCTACAAAATGAACGTGAGTCTCTTATGAAGCGTCAGAAGATACTCCATTCTTGCTTGAATGAGTTCAAAAACGTTGCTCGGTCCCTTTGA
Protein sequence

>Msa1191000

MSSTTTPTKTPSTSTRSRKHSDSKSRFEAYNRLQAAAVAFGETLPIPEIVAVGGQSDGKSSLLEALLGFRFNVREVEMGTRRPLILQMLHDPSALEPRCRFQEEDSEEYGSPVVSASTIADIIKSRTEALLKITKTAVSPKPIVLKAEYAHCPNLTIIDTPGFVLKAKKGEPENTPDEILSMVKTLATPPHRILLFLQQSSVEWCSSLWLDSIREIDPTFRRTIIVVSKFDNRLKEFTDRWEVDRYLSASGYLGDNTRPFFVALPKDRGNISNEEFRRQISHVDSEVMHHLRDGVKGGFDEEKFKSYIGFGRLRDYLESELQKKYKEAAPSTLALLEQRCSEVTCELSGLDSKIEATSDISHLRKFAMLCAASISNHVGALIDGAADPSPEQWGKTTVEERSQSGIGIWPGVITDVNPPNASLRLYGGAAFERVMHEFRCAAYSIECPPVSREKVANILLAHAGRGGGRGLTEAAAEIARAAARSWLAPLLDTACDRLAFVLGSLFDLALERNRRHDSAYGIKTGNMDGYVGFHAALRCAYTRFLKDLAKQCKQLVRHHLDSVTSPYSQVCYFNDFQPCAGINASSFNKFPQASASSFFLELSDTNSASHDVRRDQENIPPEKNALEETTPGKAAHVRESLRESQMTIPETPSPDQPGDPVYGGHRKELGICNDMGPRKRASRMTGNGKNSDYIRLQNDSILFGNGERTGSAYSEICLSAGQHFARIREVLVERGVTSTLNSGFLTPCRDRLVVALGLDLFAVNDEKFMDMFVAPGAIDVLQNERESLMKRQKILHSCLNEFKNVARSL*