AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0657210

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0657210 MtrunA17_Chr8g0379171 99.427 524 3 0 1 524 1 524 0.0 1059
Msa0657210 MtrunA17_Chr2g0284061 83.397 524 87 0 1 524 1 524 0.0 916
Msa0657210 MtrunA17_Chr3g0119521 72.587 518 141 1 8 524 3 520 0.0 793
Msa0657210 MtrunA17_Chr8g0364611 59.846 518 206 1 7 522 14 531 0.0 645
Msa0657210 MtrunA17_Chr3g0117941 59.653 518 207 1 7 522 13 530 0.0 633
Msa0657210 MtrunA17_Chr4g0059331 59.266 518 209 1 7 522 13 530 0.0 629
Msa0657210 MtrunA17_Chr1g0154001 57.534 511 217 0 12 522 35 545 0.0 607
Msa0657210 MtrunA17_Chr5g0414131 56.298 524 221 4 5 522 15 536 0.0 597
Msa0657210 MtrunA17_Chr1g0207021 54.356 528 232 4 1 522 1 525 0.0 572
Msa0657210 MtrunA17_Chr3g0134911 48.998 549 240 5 9 522 40 583 0.0 550
Msa0657210 MtrunA17_Chr5g0405471 51.206 539 238 6 5 522 26 560 0.0 544
Msa0657210 MtrunA17_Chr8g0367361 35.727 543 309 6 11 521 234 768 3.49e-112 350
Msa0657210 MtrunA17_Chr2g0320981 36.381 536 303 5 20 521 147 678 6.53e-111 344
Msa0657210 MtrunA17_Chr5g0412181 37.170 530 297 5 20 517 168 693 1.26e-109 342
Msa0657210 MtrunA17_Chr4g0027121 35.261 536 310 5 20 521 154 686 1.74e-104 328
Msa0657210 MtrunA17_Chr2g0332871 33.598 503 288 6 40 521 166 643 4.23e-96 305
Msa0657210 MtrunA17_Chr8g0379181 88.889 54 6 0 401 454 9 62 3.23e-26 101
Msa0657210 MtrunA17_Chr5g0418111 64.286 56 20 0 455 510 39 94 7.64e-19 81.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0657210 AT2G34190.1 83.588 524 86 0 1 524 1 524 0.0 926
Msa0657210 AT2G05760.1 70.077 518 154 1 8 524 3 520 0.0 764
Msa0657210 AT5G62890.1 59.266 518 209 1 7 522 13 530 0.0 628
Msa0657210 AT5G62890.2 59.266 518 209 1 7 522 13 530 0.0 628
Msa0657210 AT5G62890.3 59.266 518 209 1 7 522 13 530 0.0 628
Msa0657210 AT1G60030.1 57.198 514 218 1 11 522 23 536 0.0 621
Msa0657210 AT2G26510.1 57.553 523 221 1 1 522 25 547 0.0 612
Msa0657210 AT1G10540.1 54.771 524 231 4 5 522 14 537 0.0 590
Msa0657210 AT5G49990.2 56.371 518 224 1 7 522 9 526 0.0 586
Msa0657210 AT5G49990.3 56.371 518 224 1 7 522 9 526 0.0 586
Msa0657210 AT5G49990.1 56.371 518 224 1 7 522 9 526 0.0 586
Msa0657210 AT5G49990.4 56.371 518 224 1 7 522 9 526 0.0 586
Msa0657210 AT1G49960.1 55.832 523 228 2 3 522 2 524 0.0 577
Msa0657210 AT1G65550.1 50.758 528 248 5 5 522 14 539 0.0 552
Msa0657210 AT5G62890.4 58.482 448 186 0 7 454 13 460 0.0 535
Msa0657210 AT2G26510.3 57.867 375 158 0 1 375 25 399 1.11e-147 430
Msa0657210 AT1G10540.2 55.200 375 164 3 5 375 14 388 3.07e-144 421
Msa0657210 AT2G26510.2 57.735 362 153 0 1 362 25 386 6.75e-142 416
Msa0657210 AT5G25420.1 42.986 442 171 5 5 439 26 393 6.88e-123 367
Msa0657210 AT2G27810.1 35.261 536 310 6 20 521 169 701 1.36e-102 324
Msa0657210 AT4G38050.1 35.581 534 308 5 20 521 175 704 3.08e-99 315
Msa0657210 AT2G27810.4 33.750 560 310 7 20 521 169 725 2.90e-97 310
Msa0657210 AT2G27810.2 36.256 422 250 4 20 423 169 589 2.39e-82 268
Msa0657210 AT2G27810.3 36.533 375 219 4 20 376 169 542 9.03e-71 236

Find 149 sgRNAs with CRISPR-Local

Find 331 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCCAGCATACAAATTATTT+TGG 0.101959 4_3:+66759438 Msa0657210:CDS
TAATTTGTTTCAGGTAAATT+TGG 0.196029 4_3:+66761030 Msa0657210:intron
AAAGGTTCGATATATGTTTA+TGG 0.205413 4_3:+66762060 Msa0657210:three_prime_UTR
TTCATTTCTTGTTCCTTCAA+TGG 0.226954 4_3:+66757590 Msa0657210:CDS
TTTGATGCTGGCCACTCTTT+TGG 0.230201 4_3:+66760440 Msa0657210:CDS
GTAATTACATTAGTTGGTTT+TGG 0.246380 4_3:+66759654 Msa0657210:CDS
GGTGAATGACTTATCTCTTC+TGG 0.248677 4_3:-66757351 None:intergenic
AATTGGGTGGACAATGAATT+TGG 0.256401 4_3:-66762027 None:intergenic
TCATAACAACCACAGTGATA+TGG 0.275276 4_3:+66760170 Msa0657210:CDS
CGCAAAGTTGGAGGTGATTA+TGG 0.278451 4_3:+66757317 Msa0657210:exon
ATTGATTATTGCTGTGTTCT+TGG 0.284940 4_3:+66761667 Msa0657210:CDS
ATTTCAGAGAATACACTATC+AGG 0.289187 4_3:+66761319 Msa0657210:CDS
CCATGGCATTCCTCTATCTT+TGG 0.292772 4_3:-66761717 None:intergenic
TTCTTCAAGTTAGTTGGATT+TGG 0.293111 4_3:+66757271 Msa0657210:five_prime_UTR
TTCACCAATGGATCAACTTC+AGG 0.304968 4_3:+66757368 Msa0657210:CDS
GGACAATACTCTTGACTATA+AGG 0.306775 4_3:+66761688 Msa0657210:CDS
AAACCAACTAATGTAATTAC+TGG 0.315074 4_3:-66759651 None:intergenic
AAGAATAGAAGATGGTATTC+AGG 0.318777 4_3:-66761631 None:intergenic
AACCTTTCCAATGCAGCAAT+TGG 0.318940 4_3:-66762044 None:intergenic
ATGATATTCTTTGCAATGTT+AGG 0.319292 4_3:+66760912 Msa0657210:CDS
CTCCTATCACTGTTGGTAAC+CGG 0.320169 4_3:-66759141 None:intergenic
GTGGGGACTTGTGTTGAAAT+TGG 0.325063 4_3:+66759809 Msa0657210:CDS
AAATATGGGCTATTTGTTCT+AGG 0.325670 4_3:+66759470 Msa0657210:CDS
CAGCATTTCTTCAAGTTAGT+TGG 0.327712 4_3:+66757265 Msa0657210:five_prime_UTR
TCATTTCTTGTTCCTTCAAT+GGG 0.346165 4_3:+66757591 Msa0657210:CDS
GTGTATTCTCTGAAATATTC+AGG 0.350685 4_3:-66761312 None:intergenic
ATCTCATTTCTTCCGCTCCT+TGG 0.363626 4_3:+66760278 Msa0657210:CDS
TATAGATTCAAATCCATCTT+GGG 0.371990 4_3:+66757404 Msa0657210:CDS
CTTGTTTGTAGTGTTCTCTC+AGG 0.378594 4_3:+66759847 Msa0657210:CDS
AAAAGAAGGGTCACGAATAA+TGG 0.387784 4_3:-66759194 None:intergenic
TTTGGGATTTAGTCAAATAT+GGG 0.396617 4_3:+66759456 Msa0657210:CDS
GAGCCGTGGTATCGGTTGGC+AGG 0.401838 4_3:+66760679 Msa0657210:CDS
GTTCCAGTAATTACATTAGT+TGG 0.413657 4_3:+66759648 Msa0657210:CDS
TGCCAACACGGTTGCTTCCT+AGG 0.415342 4_3:-66760857 None:intergenic
TGTCCACCCAATTGCTGCAT+TGG 0.415729 4_3:+66762037 Msa0657210:three_prime_UTR
GGTATCGGTTGGCAGGGAAT+TGG 0.421613 4_3:+66760686 Msa0657210:CDS
AGGGTTATTCAAGTTTCTGC+TGG 0.424755 4_3:+66760885 Msa0657210:CDS
TACACTATCAGGGCCTTTCA+TGG 0.429220 4_3:+66761330 Msa0657210:CDS
TCCCAAAATAATTTGTATGC+TGG 0.431042 4_3:-66759440 None:intergenic
AGAGAGAATGTAGGACTCCT+AGG 0.436161 4_3:+66760840 Msa0657210:intron
CATAACAACCACAGTGATAT+GGG 0.441500 4_3:+66760171 Msa0657210:CDS
ACCTTTCCAATGCAGCAATT+GGG 0.443337 4_3:-66762043 None:intergenic
TGTTGCAGGATGATAAAGTA+AGG 0.446203 4_3:+66759056 Msa0657210:intron
GTATAGATTCAAATCCATCT+TGG 0.446520 4_3:+66757403 Msa0657210:CDS
AGGAGGATCATATGCATTCA+TGG 0.453580 4_3:+66759159 Msa0657210:CDS
TCATGTAATAACAGAACAAA+AGG 0.465001 4_3:+66761918 Msa0657210:three_prime_UTR
ACATCATTTCCACCCATTGA+AGG 0.466107 4_3:-66757603 None:intergenic
AACATAGTTGTAGGACAGAC+AGG 0.467914 4_3:+66760251 Msa0657210:CDS
TCACGAATAATGGATACAAT+GGG 0.468928 4_3:-66759184 None:intergenic
TGCTCATACCAAAGCTGGAT+GGG 0.470991 4_3:+66761356 Msa0657210:CDS
TGCAAACACTGTTTGGAACC+CGG 0.473980 4_3:+66759122 Msa0657210:CDS
AATGATAGATGACCCACAAT+TGG 0.477393 4_3:+66759219 Msa0657210:CDS
TCCTATCACTGTTGGTAACC+GGG 0.477745 4_3:-66759140 None:intergenic
GCCAACCGATACCACGGCTC+AGG 0.478834 4_3:-66760676 None:intergenic
GAATAGACAAGCCTAAGAAA+AGG 0.479304 4_3:-66761290 None:intergenic
GGTCCTGCTCATACCAAAGC+TGG 0.479360 4_3:+66761351 Msa0657210:CDS
ATAATCATAAGTCGCAAAGT+TGG 0.479598 4_3:+66757305 Msa0657210:five_prime_UTR
TCACCAATGGATCAACTTCA+GGG 0.480974 4_3:+66757369 Msa0657210:CDS
GAAACTCACCCATCCAGCTT+TGG 0.485860 4_3:-66761364 None:intergenic
GTACACAGAAACTGTTGAAC+CGG 0.486278 4_3:-66760741 None:intergenic
AGAAATGTGCTAACCAATTG+TGG 0.486451 4_3:-66759232 None:intergenic
CATAAGAGACATGTTAGAGT+TGG 0.486562 4_3:+66761843 Msa0657210:three_prime_UTR
ACCCGGTTACCAACAGTGAT+AGG 0.489452 4_3:+66759139 Msa0657210:CDS
AAGAGACATGTTAGAGTTGG+AGG 0.496022 4_3:+66761846 Msa0657210:three_prime_UTR
ATTGAAGGAACAAGAAATGA+AGG 0.499359 4_3:-66757588 None:intergenic
GCACCCCACTCAAGAGGGTA+TGG 0.499949 4_3:-66760410 None:intergenic
ATGTAACTCAACATAGTTGT+AGG 0.501947 4_3:+66760242 Msa0657210:CDS
TCATCTATCATTGCAAAAGA+AGG 0.502196 4_3:-66759208 None:intergenic
CTGTGTTTAGAGAGATTAGT+GGG 0.502513 4_3:-66757245 None:intergenic
AAACCCTGAAGTTGATCCAT+TGG 0.502837 4_3:-66757372 None:intergenic
AAGAAGCGGTTGAGATTGAA+AGG 0.503438 4_3:-66761797 None:intergenic
AACCGGTTAGTGTTCCGAAA+AGG 0.514137 4_3:-66760724 None:intergenic
ATGAGGAACCTCTTTATCAC+TGG 0.516659 4_3:+66761261 Msa0657210:CDS
CATGTCCTGAGCCGTGGTAT+CGG 0.518412 4_3:+66760671 Msa0657210:CDS
AATAGACAAGCCTAAGAAAA+GGG 0.522987 4_3:-66761289 None:intergenic
TTTCTTGTTCCTTCAATGGG+TGG 0.525960 4_3:+66757594 Msa0657210:CDS
GCAATAATCAATGCAACAGT+TGG 0.533111 4_3:-66761656 None:intergenic
AAGGACAGTGCCAAAGATAG+AGG 0.534675 4_3:+66761707 Msa0657210:CDS
TCCTGAGCCGTGGTATCGGT+TGG 0.538613 4_3:+66760675 Msa0657210:CDS
ATCATAAGTCGCAAAGTTGG+AGG 0.539475 4_3:+66757308 Msa0657210:five_prime_UTR
TCAAGTTAGTTGGATTTGGA+AGG 0.540514 4_3:+66757275 Msa0657210:five_prime_UTR
TATGATCCTCCTATCACTGT+TGG 0.541705 4_3:-66759148 None:intergenic
GGTGCTCCTACATTTGATGC+TGG 0.543276 4_3:+66760428 Msa0657210:CDS
CCACGGCTCAGGACATGAGC+AGG 0.543664 4_3:-66760665 None:intergenic
CATCCAGCTTTGGTATGAGC+AGG 0.545272 4_3:-66761354 None:intergenic
GAGTGGCCAGCATCAAATGT+AGG 0.547055 4_3:-66760434 None:intergenic
CTGCTCATACCAAAGCTGGA+TGG 0.547379 4_3:+66761355 Msa0657210:CDS
GAAATGTGCTAACCAATTGT+GGG 0.548277 4_3:-66759231 None:intergenic
GTCACGAATAATGGATACAA+TGG 0.549123 4_3:-66759185 None:intergenic
CAGAAACTTGAATAACCCTT+CGG 0.550365 4_3:-66760881 None:intergenic
CTCAGGACATGAGCAGGCGG+TGG 0.550799 4_3:-66760659 None:intergenic
ACCCAATTGCTGCATTGGAA+AGG 0.551724 4_3:+66762042 Msa0657210:three_prime_UTR
CAACTATGTTGAGTTACATC+CGG 0.554296 4_3:-66760238 None:intergenic
GGGCAACACCAGTGATAAAG+AGG 0.555822 4_3:-66761269 None:intergenic
GACATGAGCAGGCGGTGGTG+TGG 0.560084 4_3:-66760654 None:intergenic
CATGCAAACATACCCCAAGA+TGG 0.560663 4_3:-66757417 None:intergenic
TAACCCTTCGGCTGCCAACA+CGG 0.560723 4_3:-66760869 None:intergenic
ATTTGACAGAGGTTTCCCTA+TGG 0.567601 4_3:+66759680 Msa0657210:CDS
GTTCCTCATTGAATTCATGT+TGG 0.571510 4_3:-66761247 None:intergenic
GCAACCGTGTTGGCAGCCGA+AGG 0.576172 4_3:+66760865 Msa0657210:CDS
GCTGTGTTTAGAGAGATTAG+TGG 0.576975 4_3:-66757246 None:intergenic
CACTACAAACAAGATTAGCA+TGG 0.579230 4_3:-66759837 None:intergenic
CTCCTAGGAAGCAACCGTGT+TGG 0.580038 4_3:+66760855 Msa0657210:CDS
TTTCAGAGAATACACTATCA+GGG 0.580243 4_3:+66761320 Msa0657210:CDS
AGTTGGTGAAGAATAGAAGA+TGG 0.581474 4_3:-66761639 None:intergenic
CCTGCTCATGTCCTGAGCCG+TGG 0.582782 4_3:+66760665 Msa0657210:CDS
TTTCCAATGCAGCAATTGGG+TGG 0.585119 4_3:-66762040 None:intergenic
AGCCGTGGTATCGGTTGGCA+GGG 0.590320 4_3:+66760680 Msa0657210:CDS
GGTATGAGCAGGACCATGAA+AGG 0.591544 4_3:-66761343 None:intergenic
AATAAAACCACTAAAAGTGT+TGG 0.592486 4_3:-66761997 None:intergenic
CATCTATCATTGCAAAAGAA+GGG 0.595562 4_3:-66759207 None:intergenic
TTCCCTGCCAACCGATACCA+CGG 0.595568 4_3:-66760682 None:intergenic
ACAGTGGAGACAATACTGCT+TGG 0.596630 4_3:+66757522 Msa0657210:intron
AGAGCAAATCTCTCTAGTAT+CGG 0.602160 4_3:-66760145 None:intergenic
CATCTTGACAGAGAGAATGT+AGG 0.602743 4_3:+66760831 Msa0657210:intron
ACTACAAACAAGATTAGCAT+GGG 0.605867 4_3:-66759836 None:intergenic
CAGCCATCATTCCAAAAGAG+TGG 0.607490 4_3:-66760451 None:intergenic
AGATTCCATACCCTCTTGAG+TGG 0.607942 4_3:+66760405 Msa0657210:CDS
ATGCTACAATTAGTGCACCT+TGG 0.608851 4_3:-66759417 None:intergenic
AACAGAACTAAGTGTTAGAG+TGG 0.614616 4_3:+66757181 Msa0657210:five_prime_UTR
TAGGAGCACCCCACTCAAGA+GGG 0.617390 4_3:-66760415 None:intergenic
AGAGATAAGTCATTCACCAA+TGG 0.619804 4_3:+66757356 Msa0657210:CDS
GCACATCTATTGACAGCGAG+TGG 0.619907 4_3:+66760199 Msa0657210:CDS
GATTCCATACCCTCTTGAGT+GGG 0.620879 4_3:+66760406 Msa0657210:CDS
GTAGGAGCACCCCACTCAAG+AGG 0.622953 4_3:-66760416 None:intergenic
AAGATAGAGGAATGCCATGG+TGG 0.624875 4_3:+66761720 Msa0657210:CDS
TATGTTGAGTTACATCCGGC+CGG 0.624907 4_3:-66760234 None:intergenic
CAACCGTGTTGGCAGCCGAA+GGG 0.626544 4_3:+66760866 Msa0657210:CDS
AGATAGAGGAATGCCATGGT+GGG 0.635902 4_3:+66761721 Msa0657210:CDS
GTTGCAGGATGATAAAGTAA+GGG 0.641584 4_3:+66759057 Msa0657210:intron
TGGAGCATACAAACACCGGC+CGG 0.643571 4_3:+66760219 Msa0657210:CDS
ATAGATTCAAATCCATCTTG+GGG 0.643928 4_3:+66757405 Msa0657210:CDS
CGGTTACCAACAGTGATAGG+AGG 0.653551 4_3:+66759142 Msa0657210:CDS
GCAGGATGATAAAGTAAGGG+TGG 0.654485 4_3:+66759060 Msa0657210:intron
AGCACAATGAGAGCAGTCCA+AGG 0.659630 4_3:+66759400 Msa0657210:CDS
CGAGTGGAGCATACAAACAC+CGG 0.663938 4_3:+66760215 Msa0657210:CDS
CGGCTCAGGACATGAGCAGG+CGG 0.664877 4_3:-66760662 None:intergenic
ATTCCATACCCTCTTGAGTG+GGG 0.671790 4_3:+66760407 Msa0657210:CDS
GTTCTAAACTTAGCCCACCA+TGG 0.673056 4_3:-66761734 None:intergenic
TATTGGTACCAACCAAGGAG+CGG 0.679674 4_3:-66760290 None:intergenic
ATTACTGGAACCATTCCAAG+TGG 0.685617 4_3:-66759636 None:intergenic
CCAAAGATAGAGGAATGCCA+TGG 0.686802 4_3:+66761717 Msa0657210:CDS
TCACCAACATGAATTCAATG+AGG 0.689628 4_3:+66761244 Msa0657210:CDS
ACATAGTTGTAGGACAGACA+GGG 0.696081 4_3:+66760252 Msa0657210:CDS
TCTATGATGGAGGAAAGAAG+CGG 0.698502 4_3:-66761811 None:intergenic
TTACTGGAACCATTCCAAGT+GGG 0.700944 4_3:-66759635 None:intergenic
CACGAATAATGGATACAATG+GGG 0.733637 4_3:-66759183 None:intergenic
TGCATATGCCCATATCACTG+TGG 0.777461 4_3:-66760179 None:intergenic
TGTGTTTAGAGAGATTAGTG+GGG 0.791137 4_3:-66757244 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTAATAAAAGTACCTATTA+AGG + chr4_3:66757941-66757960 Msa0657210:intron 15.0%
!! GTTTAATATGTAAAAATAGT+GGG - chr4_3:66758028-66758047 None:intergenic 15.0%
!! TGTTTAATATGTAAAAATAG+TGG - chr4_3:66758029-66758048 None:intergenic 15.0%
!!! TTTTATTACTTTTTTAAACG+TGG + chr4_3:66758182-66758201 Msa0657210:intron 15.0%
!!! TTTATTACTTTTTTAAACGT+GGG + chr4_3:66758183-66758202 Msa0657210:intron 15.0%
!! CTTCACAAATATATAAAATA+AGG - chr4_3:66759500-66759519 None:intergenic 15.0%
!!! ATCTAACTATATATTTTTGT+TGG + chr4_3:66759749-66759768 Msa0657210:intron 15.0%
!!! ATATGGTTTTCATTTTTTAT+GGG + chr4_3:66760788-66760807 Msa0657210:intron 15.0%
!!! TGGTTTTCAACATTATATTT+TGG + chr4_3:66757542-66757561 Msa0657210:CDS 20.0%
!! TAGTTAAAAGAATTGAAGTT+AGG - chr4_3:66757638-66757657 None:intergenic 20.0%
!!! CATATTTAAGTACTTTTCAT+TGG - chr4_3:66758004-66758023 None:intergenic 20.0%
!!! TATTACTCATTTTTACAAGT+GGG + chr4_3:66758062-66758081 Msa0657210:intron 20.0%
!! GTAATAAAATATGTACTACT+TGG - chr4_3:66758130-66758149 None:intergenic 20.0%
!!! TATAATTAATACAGGTGTTT+TGG - chr4_3:66758507-66758526 None:intergenic 20.0%
!! TCACTAACTATAATTAATAC+AGG - chr4_3:66758515-66758534 None:intergenic 20.0%
!!! TTATTTTTGATAAGATGCAA+AGG + chr4_3:66758855-66758874 Msa0657210:intron 20.0%
!!! TATTTTTGATAAGATGCAAA+GGG + chr4_3:66758856-66758875 Msa0657210:intron 20.0%
!!! TATTTTCTTTTTATCGTGTT+TGG + chr4_3:66758889-66758908 Msa0657210:intron 20.0%
!!! TTTAAGTTTAAATTAGCTTG+TGG + chr4_3:66759902-66759921 Msa0657210:intron 20.0%
!! TATCATTGGAAAAATTATAC+CGG + chr4_3:66760521-66760540 Msa0657210:intron 20.0%
!!! TTTTCTTATTCTCATTCATA+TGG + chr4_3:66760771-66760790 Msa0657210:intron 20.0%
!!! CATATGGTTTTCATTTTTTA+TGG + chr4_3:66760787-66760806 Msa0657210:intron 20.0%
!!! TAATTTGTTTCAGGTAAATT+TGG + chr4_3:66761030-66761049 Msa0657210:intron 20.0%
!!! TATGTAAGAATTTTCTATGA+TGG - chr4_3:66761827-66761846 None:intergenic 20.0%
! TATAGATTCAAATCCATCTT+GGG + chr4_3:66757404-66757423 Msa0657210:CDS 25.0%
!!! CAACATTATATTTTGGCATT+AGG + chr4_3:66757549-66757568 Msa0657210:CDS 25.0%
!! TAATTCCCTTTTATTGTGTT+TGG + chr4_3:66757748-66757767 Msa0657210:intron 25.0%
! TTGATCCAAACACAATAAAA+GGG - chr4_3:66757756-66757775 None:intergenic 25.0%
! ATTGATCCAAACACAATAAA+AGG - chr4_3:66757757-66757776 None:intergenic 25.0%
!!! TGGATCAATGTTTTAACAAT+CGG + chr4_3:66757768-66757787 Msa0657210:intron 25.0%
!!! CTATTACTCATTTTTACAAG+TGG + chr4_3:66758061-66758080 Msa0657210:intron 25.0%
! TTATTACTTCTTTATGCAAG+TGG + chr4_3:66758102-66758121 Msa0657210:intron 25.0%
! TATTACTTCTTTATGCAAGT+GGG + chr4_3:66758103-66758122 Msa0657210:intron 25.0%
! GTAATAAAATGTGTACTACT+TGG - chr4_3:66758089-66758108 None:intergenic 25.0%
!!! TTTGTCTATTGGTTTAATCA+TGG + chr4_3:66758363-66758382 Msa0657210:intron 25.0%
!! TGAATTTTACACTGTTGTTA+AGG + chr4_3:66758435-66758454 Msa0657210:intron 25.0%
! AAATACCCATGACTATTTAT+TGG + chr4_3:66758695-66758714 Msa0657210:intron 25.0%
! TCTATCCAATAAATAGTCAT+GGG - chr4_3:66758703-66758722 None:intergenic 25.0%
!!! CTACTTTGATTTGATTTTGA+TGG + chr4_3:66758816-66758835 Msa0657210:intron 25.0%
!!! ATTTTTTTTGTCTTGTGTAC+TGG + chr4_3:66758915-66758934 Msa0657210:intron 25.0%
!! ATCCAGCATACAAATTATTT+TGG + chr4_3:66759438-66759457 Msa0657210:CDS 25.0%
!! TCCAGCATACAAATTATTTT+GGG + chr4_3:66759439-66759458 Msa0657210:CDS 25.0%
!!! TTTTGGGATTTAGTCAAATA+TGG + chr4_3:66759455-66759474 Msa0657210:CDS 25.0%
!! TTTGGGATTTAGTCAAATAT+GGG + chr4_3:66759456-66759475 Msa0657210:CDS 25.0%
! AAACCAACTAATGTAATTAC+TGG - chr4_3:66759654-66759673 None:intergenic 25.0%
!!! GTAATTACATTAGTTGGTTT+TGG + chr4_3:66759654-66759673 Msa0657210:CDS 25.0%
! CAACACATCATAATACATTA+AGG - chr4_3:66760088-66760107 None:intergenic 25.0%
! CAAAGAAAATATTGAGCTAT+TGG + chr4_3:66760349-66760368 Msa0657210:intron 25.0%
! CTTCATAAAATGACTATCAT+TGG + chr4_3:66760507-66760526 Msa0657210:intron 25.0%
!!! TTATTATTTTGACAGTCAAC+TGG + chr4_3:66760599-66760618 Msa0657210:intron 25.0%
! ATGATATTCTTTGCAATGTT+AGG + chr4_3:66760912-66760931 Msa0657210:CDS 25.0%
! TGAAACAAATTATGAAACAC+AGG - chr4_3:66761022-66761041 None:intergenic 25.0%
!!! TGTGTTTCATAATTTGTTTC+AGG + chr4_3:66761021-66761040 Msa0657210:intron 25.0%
! AGTATATAGCAGCAAAAATA+GGG - chr4_3:66761080-66761099 None:intergenic 25.0%
!! AGCATCTATTGATAATTGTT+TGG + chr4_3:66761155-66761174 Msa0657210:intron 25.0%
!!! ATATTTTTTTCAGCTTCTGT+AGG + chr4_3:66761204-66761223 Msa0657210:intron 25.0%
!!! TATTTTTTTCAGCTTCTGTA+GGG + chr4_3:66761205-66761224 Msa0657210:intron 25.0%
! TCATGTAATAACAGAACAAA+AGG + chr4_3:66761918-66761937 Msa0657210:three_prime_UTR 25.0%
!! ATTTTTACCAACACTTTTAG+TGG + chr4_3:66761990-66762009 Msa0657210:three_prime_UTR 25.0%
!! AATAAAACCACTAAAAGTGT+TGG - chr4_3:66762000-66762019 None:intergenic 25.0%
! AAAGGTTCGATATATGTTTA+TGG + chr4_3:66762060-66762079 Msa0657210:three_prime_UTR 25.0%
!! AAACACCGAGAATTTTTATT+TGG + chr4_3:66762092-66762111 Msa0657210:three_prime_UTR 25.0%
! TTCTTCAAGTTAGTTGGATT+TGG + chr4_3:66757271-66757290 Msa0657210:five_prime_UTR 30.0%
ATAATCATAAGTCGCAAAGT+TGG + chr4_3:66757305-66757324 Msa0657210:five_prime_UTR 30.0%
GTATAGATTCAAATCCATCT+TGG + chr4_3:66757403-66757422 Msa0657210:CDS 30.0%
ATAGATTCAAATCCATCTTG+GGG + chr4_3:66757405-66757424 Msa0657210:CDS 30.0%
!! GTGTTTTGAATTGTTAACAG+TGG + chr4_3:66757506-66757525 Msa0657210:intron 30.0%
ATTGAAGGAACAAGAAATGA+AGG - chr4_3:66757591-66757610 None:intergenic 30.0%
TTCATTTCTTGTTCCTTCAA+TGG + chr4_3:66757590-66757609 Msa0657210:CDS 30.0%
TCATTTCTTGTTCCTTCAAT+GGG + chr4_3:66757591-66757610 Msa0657210:CDS 30.0%
AACTGGTTGAATTGGAAATT+GGG + chr4_3:66757822-66757841 Msa0657210:intron 30.0%
CATTTAAGAAGTCCTTGTTA+GGG - chr4_3:66757888-66757907 None:intergenic 30.0%
! TAACCTACTAGTTTGTCTAT+TGG + chr4_3:66758352-66758371 Msa0657210:intron 30.0%
AAACCAATAGACAAACTAGT+AGG - chr4_3:66758358-66758377 None:intergenic 30.0%
AGTTGAATCAGATTGAATAG+TGG + chr4_3:66758400-66758419 Msa0657210:intron 30.0%
GACAATGAAAAATACTAGCA+AGG + chr4_3:66758631-66758650 Msa0657210:intron 30.0%
CTCTATCCAATAAATAGTCA+TGG - chr4_3:66758704-66758723 None:intergenic 30.0%
CATGACTATTTATTGGATAG+AGG + chr4_3:66758702-66758721 Msa0657210:intron 30.0%
!! TTGATTTTGATGGATGATAC+TGG + chr4_3:66758826-66758845 Msa0657210:intron 30.0%
TGAATATCAATCCTCTATCT+TGG - chr4_3:66759024-66759043 None:intergenic 30.0%
CATATATTGCTTATTGTTGC+AGG + chr4_3:66759042-66759061 Msa0657210:intron 30.0%
!!! CAAACTCTACTTTTTGTTGA+AGG + chr4_3:66759085-66759104 Msa0657210:CDS 30.0%
!! TCACGAATAATGGATACAAT+GGG - chr4_3:66759187-66759206 None:intergenic 30.0%
CATCTATCATTGCAAAAGAA+GGG - chr4_3:66759210-66759229 None:intergenic 30.0%
TCATCTATCATTGCAAAAGA+AGG - chr4_3:66759211-66759230 None:intergenic 30.0%
! TCCCAAAATAATTTGTATGC+TGG - chr4_3:66759443-66759462 None:intergenic 30.0%
! AAATATGGGCTATTTGTTCT+AGG + chr4_3:66759470-66759489 Msa0657210:CDS 30.0%
AAAATCTGCATGAAAGGAAA+AGG - chr4_3:66759611-66759630 None:intergenic 30.0%
GTTCCAGTAATTACATTAGT+TGG + chr4_3:66759648-66759667 Msa0657210:CDS 30.0%
ACTACAAACAAGATTAGCAT+GGG - chr4_3:66759839-66759858 None:intergenic 30.0%
TCAGGTATATGTCAAATAAC+TGG + chr4_3:66759865-66759884 Msa0657210:intron 30.0%
TATATGTCAAATAACTGGAC+TGG + chr4_3:66759870-66759889 Msa0657210:intron 30.0%
!! TTAAATTAGCTTGTGGAATG+TGG + chr4_3:66759909-66759928 Msa0657210:intron 30.0%
GTAACAAATTGAACAGAAAG+AGG - chr4_3:66760041-66760060 None:intergenic 30.0%
!! TCAATTTGTTACACCTGAAT+AGG + chr4_3:66760049-66760068 Msa0657210:intron 30.0%
TCATTCATTCAAACCTATTC+AGG - chr4_3:66760065-66760084 None:intergenic 30.0%
ATGTAACTCAACATAGTTGT+AGG + chr4_3:66760242-66760261 Msa0657210:CDS 30.0%
!!! TGTTTTAGTCTCATTAGTTG+AGG + chr4_3:66760475-66760494 Msa0657210:CDS 30.0%
!!! GTTTTCATTTTTTATGGGAC+AGG + chr4_3:66760793-66760812 Msa0657210:intron 30.0%
CAGTATATAGCAGCAAAAAT+AGG - chr4_3:66761081-66761100 None:intergenic 30.0%
!! GCTATATACTGTGTTTTGTT+TGG + chr4_3:66761090-66761109 Msa0657210:CDS 30.0%
GATGCTGAAGTAAATTCAAA+GGG - chr4_3:66761141-66761160 None:intergenic 30.0%
AGATGCTGAAGTAAATTCAA+AGG - chr4_3:66761142-66761161 None:intergenic 30.0%
! GATAATTGTTTGGTCTTCTT+TGG + chr4_3:66761165-66761184 Msa0657210:intron 30.0%
AATAGACAAGCCTAAGAAAA+GGG - chr4_3:66761292-66761311 None:intergenic 30.0%
!! GTGTATTCTCTGAAATATTC+AGG - chr4_3:66761315-66761334 None:intergenic 30.0%
ATTTCAGAGAATACACTATC+AGG + chr4_3:66761319-66761338 Msa0657210:CDS 30.0%
TTTCAGAGAATACACTATCA+GGG + chr4_3:66761320-66761339 Msa0657210:CDS 30.0%
TCATTGAACTGCAAAATCAA+AGG - chr4_3:66761608-66761627 None:intergenic 30.0%
AAGAATAGAAGATGGTATTC+AGG - chr4_3:66761634-66761653 None:intergenic 30.0%
ATTGATTATTGCTGTGTTCT+TGG + chr4_3:66761667-66761686 Msa0657210:CDS 30.0%
! GTAAGAATTTTCTATGATGG+AGG - chr4_3:66761824-66761843 None:intergenic 30.0%
AACAGAACTAAGTGTTAGAG+TGG + chr4_3:66757181-66757200 Msa0657210:five_prime_UTR 35.0%
TGTGTTTAGAGAGATTAGTG+GGG - chr4_3:66757247-66757266 None:intergenic 35.0%
CTGTGTTTAGAGAGATTAGT+GGG - chr4_3:66757248-66757267 None:intergenic 35.0%
! CAGCATTTCTTCAAGTTAGT+TGG + chr4_3:66757265-66757284 Msa0657210:five_prime_UTR 35.0%
TCAAGTTAGTTGGATTTGGA+AGG + chr4_3:66757275-66757294 Msa0657210:five_prime_UTR 35.0%
AGAGATAAGTCATTCACCAA+TGG + chr4_3:66757356-66757375 Msa0657210:CDS 35.0%
CTCTATGCAAATCTCTACTT+AGG + chr4_3:66757715-66757734 Msa0657210:intron 35.0%
TTCAGTTCAACTGGTTGAAT+TGG + chr4_3:66757814-66757833 Msa0657210:intron 35.0%
CAACTGGTTGAATTGGAAAT+TGG + chr4_3:66757821-66757840 Msa0657210:intron 35.0%
ACTGGTTGAATTGGAAATTG+GGG + chr4_3:66757823-66757842 Msa0657210:intron 35.0%
GAAATTGGGGTATGTTTAAC+AGG + chr4_3:66757836-66757855 Msa0657210:intron 35.0%
CCATTTAAGAAGTCCTTGTT+AGG - chr4_3:66757889-66757908 None:intergenic 35.0%
CCTAACAAGGACTTCTTAAA+TGG + chr4_3:66757886-66757905 Msa0657210:intron 35.0%
AAATAAGTGATGTGTCACGT+GGG - chr4_3:66757914-66757933 None:intergenic 35.0%
TAAATAAGTGATGTGTCACG+TGG - chr4_3:66757915-66757934 None:intergenic 35.0%
CCTTATTAGTGTATTGCCAT+TGG - chr4_3:66757978-66757997 None:intergenic 35.0%
CCAATGGCAATACACTAATA+AGG + chr4_3:66757975-66757994 Msa0657210:intron 35.0%
! CTCAATTTTTCTTCCTCCAA+TGG + chr4_3:66758266-66758285 Msa0657210:intron 35.0%
! AATTTTTCTTCCTCCAATGG+AGG + chr4_3:66758269-66758288 Msa0657210:intron 35.0%
! ATTTTTCTTCCTCCAATGGA+GGG + chr4_3:66758270-66758289 Msa0657210:intron 35.0%
!! GTCTATTGGTTTAATCATGG+TGG + chr4_3:66758366-66758385 Msa0657210:intron 35.0%
TTGTCACATGCTAAATGAAG+TGG + chr4_3:66758941-66758960 Msa0657210:intron 35.0%
TGTTGCAGGATGATAAAGTA+AGG + chr4_3:66759056-66759075 Msa0657210:intron 35.0%
GTTGCAGGATGATAAAGTAA+GGG + chr4_3:66759057-66759076 Msa0657210:intron 35.0%
! ACACTTTTGCAAACACTGTT+TGG + chr4_3:66759115-66759134 Msa0657210:CDS 35.0%
!! CACGAATAATGGATACAATG+GGG - chr4_3:66759186-66759205 None:intergenic 35.0%
!! GTCACGAATAATGGATACAA+TGG - chr4_3:66759188-66759207 None:intergenic 35.0%
AAAAGAAGGGTCACGAATAA+TGG - chr4_3:66759197-66759216 None:intergenic 35.0%
AATGATAGATGACCCACAAT+TGG + chr4_3:66759219-66759238 Msa0657210:CDS 35.0%
GAAATGTGCTAACCAATTGT+GGG - chr4_3:66759234-66759253 None:intergenic 35.0%
AGAAATGTGCTAACCAATTG+TGG - chr4_3:66759235-66759254 None:intergenic 35.0%
!!! GGTTTTGGATTATTTGACAG+AGG + chr4_3:66759669-66759688 Msa0657210:CDS 35.0%
CAGTGTTGTACTATACCATA+GGG - chr4_3:66759698-66759717 None:intergenic 35.0%
TCAGTGTTGTACTATACCAT+AGG - chr4_3:66759699-66759718 None:intergenic 35.0%
CACTACAAACAAGATTAGCA+TGG - chr4_3:66759840-66759859 None:intergenic 35.0%
AGAGCAAATCTCTCTAGTAT+CGG - chr4_3:66760148-66760167 None:intergenic 35.0%
TCATAACAACCACAGTGATA+TGG + chr4_3:66760170-66760189 Msa0657210:CDS 35.0%
CATAACAACCACAGTGATAT+GGG + chr4_3:66760171-66760190 Msa0657210:CDS 35.0%
CAACTATGTTGAGTTACATC+CGG - chr4_3:66760241-66760260 None:intergenic 35.0%
! GGAATTGGAATTTTGCTGAA+TGG + chr4_3:66760701-66760720 Msa0657210:CDS 35.0%
! ATTTTGCTGAATGGCCTTTT+CGG + chr4_3:66760710-66760729 Msa0657210:CDS 35.0%
CAGAAACTTGAATAACCCTT+CGG - chr4_3:66760884-66760903 None:intergenic 35.0%
ATAGCAGCAAAAATAGGGAA+TGG - chr4_3:66761075-66761094 None:intergenic 35.0%
!!! TGTGTTTTGTTTGGTCTTGT+AGG + chr4_3:66761099-66761118 Msa0657210:CDS 35.0%
TCACCAACATGAATTCAATG+AGG + chr4_3:66761244-66761263 Msa0657210:CDS 35.0%
GTTCCTCATTGAATTCATGT+TGG - chr4_3:66761250-66761269 None:intergenic 35.0%
GAATAGACAAGCCTAAGAAA+AGG - chr4_3:66761293-66761312 None:intergenic 35.0%
!! AGTTGGTGAAGAATAGAAGA+TGG - chr4_3:66761642-66761661 None:intergenic 35.0%
GCAATAATCAATGCAACAGT+TGG - chr4_3:66761659-66761678 None:intergenic 35.0%
GGACAATACTCTTGACTATA+AGG + chr4_3:66761688-66761707 Msa0657210:CDS 35.0%
CATAAGAGACATGTTAGAGT+TGG + chr4_3:66761843-66761862 Msa0657210:three_prime_UTR 35.0%
AATTGGGTGGACAATGAATT+TGG - chr4_3:66762030-66762049 None:intergenic 35.0%
GCTGTGTTTAGAGAGATTAG+TGG - chr4_3:66757249-66757268 None:intergenic 40.0%
ATCATAAGTCGCAAAGTTGG+AGG + chr4_3:66757308-66757327 Msa0657210:five_prime_UTR 40.0%
GGTGAATGACTTATCTCTTC+TGG - chr4_3:66757354-66757373 None:intergenic 40.0%
TTCACCAATGGATCAACTTC+AGG + chr4_3:66757368-66757387 Msa0657210:CDS 40.0%
TCACCAATGGATCAACTTCA+GGG + chr4_3:66757369-66757388 Msa0657210:CDS 40.0%
! AAACCCTGAAGTTGATCCAT+TGG - chr4_3:66757375-66757394 None:intergenic 40.0%
TTTCTTGTTCCTTCAATGGG+TGG + chr4_3:66757594-66757613 Msa0657210:CDS 40.0%
ACATCATTTCCACCCATTGA+AGG - chr4_3:66757606-66757625 None:intergenic 40.0%
TTGTTAGGGAACTACCATTG+TGG - chr4_3:66757874-66757893 None:intergenic 40.0%
ACAATGGTAGTTCCCTAACA+AGG + chr4_3:66757873-66757892 Msa0657210:intron 40.0%
AATAAGTGATGTGTCACGTG+GGG - chr4_3:66757913-66757932 None:intergenic 40.0%
GGAGTCATTGAGTCCTTAAT+AGG - chr4_3:66757957-66757976 None:intergenic 40.0%
TAAGGACTCAATGACTCCAA+TGG + chr4_3:66757959-66757978 Msa0657210:intron 40.0%
AAGGAACGGGCAACTATATA+AGG - chr4_3:66758238-66758257 None:intergenic 40.0%
TATAGTTGCCCGTTCCTTAA+CGG + chr4_3:66758240-66758259 Msa0657210:intron 40.0%
GAAAAATTGAGTCCCCGTTA+AGG - chr4_3:66758257-66758276 None:intergenic 40.0%
TCACATGCTAAATGAAGTGG+TGG + chr4_3:66758944-66758963 Msa0657210:intron 40.0%
CACATGCTAAATGAAGTGGT+GGG + chr4_3:66758945-66758964 Msa0657210:intron 40.0%
TCTCCCAAAAGAGGAAAATC+TGG + chr4_3:66758968-66758987 Msa0657210:intron 40.0%
! CCACCAGATTTTCCTCTTTT+GGG - chr4_3:66758974-66758993 None:intergenic 40.0%
! TCCACCAGATTTTCCTCTTT+TGG - chr4_3:66758975-66758994 None:intergenic 40.0%
CCTCTATCTTGGTAAGTTTG+AGG - chr4_3:66759013-66759032 None:intergenic 40.0%
CCTCAAACTTACCAAGATAG+AGG + chr4_3:66759010-66759029 Msa0657210:intron 40.0%
TATGATCCTCCTATCACTGT+TGG - chr4_3:66759151-66759170 None:intergenic 40.0%
AGGAGGATCATATGCATTCA+TGG + chr4_3:66759159-66759178 Msa0657210:CDS 40.0%
GAGATACACAAACATGGAAG+AGG - chr4_3:66759368-66759387 None:intergenic 40.0%
TCATTGTGCTAAGAAACCTC+TGG - chr4_3:66759390-66759409 None:intergenic 40.0%
ATGCTACAATTAGTGCACCT+TGG - chr4_3:66759420-66759439 None:intergenic 40.0%
GGCTGAAAAATCTGCATGAA+AGG - chr4_3:66759617-66759636 None:intergenic 40.0%
!! ATTTTTCAGCCCACTTGGAA+TGG + chr4_3:66759626-66759645 Msa0657210:CDS 40.0%
TTACTGGAACCATTCCAAGT+GGG - chr4_3:66759638-66759657 None:intergenic 40.0%
ATTACTGGAACCATTCCAAG+TGG - chr4_3:66759639-66759658 None:intergenic 40.0%
ATTTGACAGAGGTTTCCCTA+TGG + chr4_3:66759680-66759699 Msa0657210:CDS 40.0%
GAATACAAGTACAAGTCACG+TGG - chr4_3:66759724-66759743 None:intergenic 40.0%
CTTGTTTGTAGTGTTCTCTC+AGG + chr4_3:66759847-66759866 Msa0657210:CDS 40.0%
AAAGCCTAGAGCAAGAAAGA+AGG + chr4_3:66759990-66760009 Msa0657210:intron 40.0%
AACATAGTTGTAGGACAGAC+AGG + chr4_3:66760251-66760270 Msa0657210:CDS 40.0%
ACATAGTTGTAGGACAGACA+GGG + chr4_3:66760252-66760271 Msa0657210:CDS 40.0%
TTCGACAACAACGATGCTAT+TGG - chr4_3:66760310-66760329 None:intergenic 40.0%
!! CATTGACTCTTGACACATGT+TGG + chr4_3:66760372-66760391 Msa0657210:intron 40.0%
TGTGTGTTACGTAAGCATAC+CGG - chr4_3:66760543-66760562 None:intergenic 40.0%
GTACACAGAAACTGTTGAAC+CGG - chr4_3:66760744-66760763 None:intergenic 40.0%
CATCTTGACAGAGAGAATGT+AGG + chr4_3:66760831-66760850 Msa0657210:intron 40.0%
! AGGGTTATTCAAGTTTCTGC+TGG + chr4_3:66760885-66760904 Msa0657210:CDS 40.0%
TCTTTGCAATGTTAGGTGAG+TGG + chr4_3:66760919-66760938 Msa0657210:intron 40.0%
TTAGGTGAGTGGCAAACTAT+AGG + chr4_3:66760930-66760949 Msa0657210:intron 40.0%
TAGGTGAGTGGCAAACTATA+GGG + chr4_3:66760931-66760950 Msa0657210:intron 40.0%
ATGAGGAACCTCTTTATCAC+TGG + chr4_3:66761261-66761280 Msa0657210:CDS 40.0%
ATCATATCTCATCTCGTCTC+AGG + chr4_3:66761411-66761430 Msa0657210:intron 40.0%
TCATATCTCATCTCGTCTCA+GGG + chr4_3:66761412-66761431 Msa0657210:intron 40.0%
AAGAAGCGGTTGAGATTGAA+AGG - chr4_3:66761800-66761819 None:intergenic 40.0%
! TCTATGATGGAGGAAAGAAG+CGG - chr4_3:66761814-66761833 None:intergenic 40.0%
AAGAGACATGTTAGAGTTGG+AGG + chr4_3:66761846-66761865 Msa0657210:three_prime_UTR 40.0%
ACCTTTCCAATGCAGCAATT+GGG - chr4_3:66762046-66762065 None:intergenic 40.0%
AACCTTTCCAATGCAGCAAT+TGG - chr4_3:66762047-66762066 None:intergenic 40.0%
CGCAAAGTTGGAGGTGATTA+TGG + chr4_3:66757317-66757336 Msa0657210:exon 45.0%
CATGCAAACATACCCCAAGA+TGG - chr4_3:66757420-66757439 None:intergenic 45.0%
ACAGTGGAGACAATACTGCT+TGG + chr4_3:66757522-66757541 Msa0657210:intron 45.0%
ACCAGTCAGTTCAGTTCAAC+TGG + chr4_3:66757805-66757824 Msa0657210:intron 45.0%
ACCAGTTGAACTGAACTGAC+TGG - chr4_3:66757809-66757828 None:intergenic 45.0%
!! GGTTGTAAGAGCATCCACAA+TGG + chr4_3:66757857-66757876 Msa0657210:intron 45.0%
TCTCTCTCCTGGGTAACTAA+CGG - chr4_3:66758211-66758230 None:intergenic 45.0%
ATAAGGACTCTCTCTCTCCT+GGG - chr4_3:66758221-66758240 None:intergenic 45.0%
TATAAGGACTCTCTCTCTCC+TGG - chr4_3:66758222-66758241 None:intergenic 45.0%
ATAGTTGCCCGTTCCTTAAC+GGG + chr4_3:66758241-66758260 Msa0657210:intron 45.0%
ATTGAGTCCCCGTTAAGGAA+CGG - chr4_3:66758252-66758271 None:intergenic 45.0%
GGAGTGGTCCTTGTTAAGTA+AGG + chr4_3:66758303-66758322 Msa0657210:intron 45.0%
! ACCGTTAGAGCATCTCCAAT+GGG - chr4_3:66758333-66758352 None:intergenic 45.0%
! TACCGTTAGAGCATCTCCAA+TGG - chr4_3:66758334-66758353 None:intergenic 45.0%
CCCAAAAGAGGAAAATCTGG+TGG + chr4_3:66758971-66758990 Msa0657210:intron 45.0%
GCAGGATGATAAAGTAAGGG+TGG + chr4_3:66759060-66759079 Msa0657210:intron 45.0%
! TGCAAACACTGTTTGGAACC+CGG + chr4_3:66759122-66759141 Msa0657210:CDS 45.0%
!! TCCTATCACTGTTGGTAACC+GGG - chr4_3:66759143-66759162 None:intergenic 45.0%
!! CTCCTATCACTGTTGGTAAC+CGG - chr4_3:66759144-66759163 None:intergenic 45.0%
! CCTCTGGAGATACACAAACA+TGG - chr4_3:66759374-66759393 None:intergenic 45.0%
CCATGTTTGTGTATCTCCAG+AGG + chr4_3:66759371-66759390 Msa0657210:intron 45.0%
!! TGCAGATTTTTCAGCCCACT+TGG + chr4_3:66759621-66759640 Msa0657210:intron 45.0%
ATGCTGTTCTGTCCTTTCTC+AGG + chr4_3:66759787-66759806 Msa0657210:intron 45.0%
TGTTCTGTCCTTTCTCAGGT+GGG + chr4_3:66759791-66759810 Msa0657210:intron 45.0%
GTGGGGACTTGTGTTGAAAT+TGG + chr4_3:66759809-66759828 Msa0657210:CDS 45.0%
TCCTCCTTCTTTCTTGCTCT+AGG - chr4_3:66759997-66760016 None:intergenic 45.0%
TGCATATGCCCATATCACTG+TGG - chr4_3:66760182-66760201 None:intergenic 45.0%
TATGTTGAGTTACATCCGGC+CGG - chr4_3:66760237-66760256 None:intergenic 45.0%
ATCTCATTTCTTCCGCTCCT+TGG + chr4_3:66760278-66760297 Msa0657210:CDS 45.0%
TATTGGTACCAACCAAGGAG+CGG - chr4_3:66760293-66760312 None:intergenic 45.0%
GATGCTATTGGTACCAACCA+AGG - chr4_3:66760298-66760317 None:intergenic 45.0%
AGATTCCATACCCTCTTGAG+TGG + chr4_3:66760405-66760424 Msa0657210:CDS 45.0%
GATTCCATACCCTCTTGAGT+GGG + chr4_3:66760406-66760425 Msa0657210:CDS 45.0%
ATTCCATACCCTCTTGAGTG+GGG + chr4_3:66760407-66760426 Msa0657210:CDS 45.0%
! TTTGATGCTGGCCACTCTTT+TGG + chr4_3:66760440-66760459 Msa0657210:CDS 45.0%
!!! TGGCCACTCTTTTGGAATGA+TGG + chr4_3:66760448-66760467 Msa0657210:CDS 45.0%
CAGCCATCATTCCAAAAGAG+TGG - chr4_3:66760454-66760473 None:intergenic 45.0%
AACCGGTTAGTGTTCCGAAA+AGG - chr4_3:66760727-66760746 None:intergenic 45.0%
AGAGAGAATGTAGGACTCCT+AGG + chr4_3:66760840-66760859 Msa0657210:intron 45.0%
!!! ACTGGTGTTGCCCTTTTCTT+AGG + chr4_3:66761279-66761298 Msa0657210:CDS 45.0%
TACACTATCAGGGCCTTTCA+TGG + chr4_3:66761330-66761349 Msa0657210:CDS 45.0%
TGCTCATACCAAAGCTGGAT+GGG + chr4_3:66761356-66761375 Msa0657210:CDS 45.0%
CATATCTCATCTCGTCTCAG+GGG + chr4_3:66761413-66761432 Msa0657210:intron 45.0%
AAGGACAGTGCCAAAGATAG+AGG + chr4_3:66761707-66761726 Msa0657210:CDS 45.0%
CCATGGCATTCCTCTATCTT+TGG - chr4_3:66761720-66761739 None:intergenic 45.0%
CCAAAGATAGAGGAATGCCA+TGG + chr4_3:66761717-66761736 Msa0657210:CDS 45.0%
AAGATAGAGGAATGCCATGG+TGG + chr4_3:66761720-66761739 Msa0657210:CDS 45.0%
AGATAGAGGAATGCCATGGT+GGG + chr4_3:66761721-66761740 Msa0657210:CDS 45.0%
! GTTCTAAACTTAGCCCACCA+TGG - chr4_3:66761737-66761756 None:intergenic 45.0%
TTTCCAATGCAGCAATTGGG+TGG - chr4_3:66762043-66762062 None:intergenic 45.0%
ACCCAATTGCTGCATTGGAA+AGG + chr4_3:66762042-66762061 Msa0657210:three_prime_UTR 45.0%
!! ACTGACTGGTTCGACTCGTT+CGG - chr4_3:66757795-66757814 None:intergenic 50.0%
CTCTCTCCTGGGTAACTAAC+GGG - chr4_3:66758210-66758229 None:intergenic 50.0%
TAGTTGCCCGTTCCTTAACG+GGG + chr4_3:66758242-66758261 Msa0657210:intron 50.0%
TTGAGTCCCCGTTAAGGAAC+GGG - chr4_3:66758251-66758270 None:intergenic 50.0%
CTCCAATGGAGGGTCCTTAA+CGG + chr4_3:66758280-66758299 Msa0657210:intron 50.0%
TCCAATGGAGGGTCCTTAAC+GGG + chr4_3:66758281-66758300 Msa0657210:intron 50.0%
TGGGGGGTCCTTACTTAACA+AGG - chr4_3:66758314-66758333 None:intergenic 50.0%
GTTAAGTAAGGACCCCCCAT+TGG + chr4_3:66758315-66758334 Msa0657210:intron 50.0%
! GTTAGAGCATCTCCAATGGG+GGG - chr4_3:66758330-66758349 None:intergenic 50.0%
! CGTTAGAGCATCTCCAATGG+GGG - chr4_3:66758331-66758350 None:intergenic 50.0%
! CCGTTAGAGCATCTCCAATG+GGG - chr4_3:66758332-66758351 None:intergenic 50.0%
CCCCATTGGAGATGCTCTAA+CGG + chr4_3:66758329-66758348 Msa0657210:intron 50.0%
ACCCGGTTACCAACAGTGAT+AGG + chr4_3:66759139-66759158 Msa0657210:CDS 50.0%
CGGTTACCAACAGTGATAGG+AGG + chr4_3:66759142-66759161 Msa0657210:CDS 50.0%
AGCACAATGAGAGCAGTCCA+AGG + chr4_3:66759400-66759419 Msa0657210:CDS 50.0%
CTGTTCTGTCCTTTCTCAGG+TGG + chr4_3:66759790-66759809 Msa0657210:intron 50.0%
GTTCTGTCCTTTCTCAGGTG+GGG + chr4_3:66759792-66759811 Msa0657210:intron 50.0%
GCCTAGAGCAAGAAAGAAGG+AGG + chr4_3:66759993-66760012 Msa0657210:intron 50.0%
GCACATCTATTGACAGCGAG+TGG + chr4_3:66760199-66760218 Msa0657210:CDS 50.0%
CGAGTGGAGCATACAAACAC+CGG + chr4_3:66760215-66760234 Msa0657210:CDS 50.0%
CATTTCTTCCGCTCCTTGGT+TGG + chr4_3:66760282-66760301 Msa0657210:intron 50.0%
CTCTTGACACATGTTGGTGC+AGG + chr4_3:66760378-66760397 Msa0657210:intron 50.0%
GGTGCTCCTACATTTGATGC+TGG + chr4_3:66760428-66760447 Msa0657210:CDS 50.0%
GAGTGGCCAGCATCAAATGT+AGG - chr4_3:66760437-66760456 None:intergenic 50.0%
! GGCCTTTTCGGAACACTAAC+CGG + chr4_3:66760722-66760741 Msa0657210:CDS 50.0%
GGGCAACACCAGTGATAAAG+AGG - chr4_3:66761272-66761291 None:intergenic 50.0%
GGTATGAGCAGGACCATGAA+AGG - chr4_3:66761346-66761365 None:intergenic 50.0%
! CATCCAGCTTTGGTATGAGC+AGG - chr4_3:66761357-66761376 None:intergenic 50.0%
CTGCTCATACCAAAGCTGGA+TGG + chr4_3:66761355-66761374 Msa0657210:CDS 50.0%
GAAACTCACCCATCCAGCTT+TGG - chr4_3:66761367-66761386 None:intergenic 50.0%
TGTCCACCCAATTGCTGCAT+TGG + chr4_3:66762037-66762056 Msa0657210:three_prime_UTR 50.0%
CGTTAAGGACCCTCCATTGG+AGG - chr4_3:66758282-66758301 None:intergenic 55.0%
CCAATGGAGGGTCCTTAACG+GGG + chr4_3:66758282-66758301 Msa0657210:intron 55.0%
ACAAGGACCACTCCCCGTTA+AGG - chr4_3:66758297-66758316 None:intergenic 55.0%
!! AGTGGTGGGTCTCCCAAAAG+AGG + chr4_3:66758959-66758978 Msa0657210:intron 55.0%
CACAAGTCCCCACCTGAGAA+AGG - chr4_3:66759802-66759821 None:intergenic 55.0%
TGGAGCATACAAACACCGGC+CGG + chr4_3:66760219-66760238 Msa0657210:CDS 55.0%
!! TAGGAGCACCCCACTCAAGA+GGG - chr4_3:66760418-66760437 None:intergenic 55.0%
CATGTCCTGAGCCGTGGTAT+CGG + chr4_3:66760671-66760690 Msa0657210:CDS 55.0%
TTCCCTGCCAACCGATACCA+CGG - chr4_3:66760685-66760704 None:intergenic 55.0%
!! GGTATCGGTTGGCAGGGAAT+TGG + chr4_3:66760686-66760705 Msa0657210:CDS 55.0%
CTCCTAGGAAGCAACCGTGT+TGG + chr4_3:66760855-66760874 Msa0657210:CDS 55.0%
TGCCAACACGGTTGCTTCCT+AGG - chr4_3:66760860-66760879 None:intergenic 55.0%
TAACCCTTCGGCTGCCAACA+CGG - chr4_3:66760872-66760891 None:intergenic 55.0%
GGTCCTGCTCATACCAAAGC+TGG + chr4_3:66761351-66761370 Msa0657210:CDS 55.0%
GTGGGACCCGTTAGTTACCC+AGG + chr4_3:66758201-66758220 Msa0657210:intron 60.0%
CCCCGTTAAGGACCCTCCAT+TGG - chr4_3:66758285-66758304 None:intergenic 60.0%
GCACCCCACTCAAGAGGGTA+TGG - chr4_3:66760413-66760432 None:intergenic 60.0%
!! GTAGGAGCACCCCACTCAAG+AGG - chr4_3:66760419-66760438 None:intergenic 60.0%
!! TCCTGAGCCGTGGTATCGGT+TGG + chr4_3:66760675-66760694 Msa0657210:CDS 60.0%
!! AGCCGTGGTATCGGTTGGCA+GGG + chr4_3:66760680-66760699 Msa0657210:CDS 60.0%
! CAACCGTGTTGGCAGCCGAA+GGG + chr4_3:66760866-66760885 Msa0657210:CDS 60.0%
GGAGGGTCCTTAACGGGGAG+TGG + chr4_3:66758287-66758306 Msa0657210:intron 65.0%
GACATGAGCAGGCGGTGGTG+TGG - chr4_3:66760657-66760676 None:intergenic 65.0%
CTCAGGACATGAGCAGGCGG+TGG - chr4_3:66760662-66760681 None:intergenic 65.0%
CGGCTCAGGACATGAGCAGG+CGG - chr4_3:66760665-66760684 None:intergenic 65.0%
CCACGGCTCAGGACATGAGC+AGG - chr4_3:66760668-66760687 None:intergenic 65.0%
CCTGCTCATGTCCTGAGCCG+TGG + chr4_3:66760665-66760684 Msa0657210:CDS 65.0%
GCCAACCGATACCACGGCTC+AGG - chr4_3:66760679-66760698 None:intergenic 65.0%
!! GAGCCGTGGTATCGGTTGGC+AGG + chr4_3:66760679-66760698 Msa0657210:CDS 65.0%
! GCAACCGTGTTGGCAGCCGA+AGG + chr4_3:66760865-66760884 Msa0657210:CDS 65.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 66757132 66762115 66757132 ID=Msa0657210;Name=Msa0657210
chr4_3 mRNA 66757132 66762115 66757132 ID=Msa0657210-mRNA-1;Parent=Msa0657210;Name=Msa0657210-mRNA-1;_AED=0.15;_eAED=0.15;_QI=204|1|1|1|1|1|13|283|524
chr4_3 exon 66757132 66757426 66757132 ID=Msa0657210-mRNA-1:exon:19204;Parent=Msa0657210-mRNA-1
chr4_3 exon 66757526 66757623 66757526 ID=Msa0657210-mRNA-1:exon:19205;Parent=Msa0657210-mRNA-1
chr4_3 exon 66759064 66759240 66759064 ID=Msa0657210-mRNA-1:exon:19206;Parent=Msa0657210-mRNA-1
chr4_3 exon 66759391 66759491 66759391 ID=Msa0657210-mRNA-1:exon:19207;Parent=Msa0657210-mRNA-1
chr4_3 exon 66759626 66759701 66759626 ID=Msa0657210-mRNA-1:exon:19208;Parent=Msa0657210-mRNA-1
chr4_3 exon 66759809 66759868 66759809 ID=Msa0657210-mRNA-1:exon:19209;Parent=Msa0657210-mRNA-1
chr4_3 exon 66760115 66760299 66760115 ID=Msa0657210-mRNA-1:exon:19210;Parent=Msa0657210-mRNA-1
chr4_3 exon 66760400 66760496 66760400 ID=Msa0657210-mRNA-1:exon:19211;Parent=Msa0657210-mRNA-1
chr4_3 exon 66760614 66760759 66760614 ID=Msa0657210-mRNA-1:exon:19212;Parent=Msa0657210-mRNA-1
chr4_3 exon 66760842 66760933 66760842 ID=Msa0657210-mRNA-1:exon:19213;Parent=Msa0657210-mRNA-1
chr4_3 exon 66761043 66761120 66761043 ID=Msa0657210-mRNA-1:exon:19214;Parent=Msa0657210-mRNA-1
chr4_3 exon 66761217 66761377 66761217 ID=Msa0657210-mRNA-1:exon:19215;Parent=Msa0657210-mRNA-1
chr4_3 exon 66761620 66762115 66761620 ID=Msa0657210-mRNA-1:exon:19216;Parent=Msa0657210-mRNA-1
chr4_3 five_prime_UTR 66757132 66757335 66757132 ID=Msa0657210-mRNA-1:five_prime_utr;Parent=Msa0657210-mRNA-1
chr4_3 CDS 66757336 66757426 66757336 ID=Msa0657210-mRNA-1:cds;Parent=Msa0657210-mRNA-1
chr4_3 CDS 66757526 66757623 66757526 ID=Msa0657210-mRNA-1:cds;Parent=Msa0657210-mRNA-1
chr4_3 CDS 66759064 66759240 66759064 ID=Msa0657210-mRNA-1:cds;Parent=Msa0657210-mRNA-1
chr4_3 CDS 66759391 66759491 66759391 ID=Msa0657210-mRNA-1:cds;Parent=Msa0657210-mRNA-1
chr4_3 CDS 66759626 66759701 66759626 ID=Msa0657210-mRNA-1:cds;Parent=Msa0657210-mRNA-1
chr4_3 CDS 66759809 66759868 66759809 ID=Msa0657210-mRNA-1:cds;Parent=Msa0657210-mRNA-1
chr4_3 CDS 66760115 66760299 66760115 ID=Msa0657210-mRNA-1:cds;Parent=Msa0657210-mRNA-1
chr4_3 CDS 66760400 66760496 66760400 ID=Msa0657210-mRNA-1:cds;Parent=Msa0657210-mRNA-1
chr4_3 CDS 66760614 66760759 66760614 ID=Msa0657210-mRNA-1:cds;Parent=Msa0657210-mRNA-1
chr4_3 CDS 66760842 66760933 66760842 ID=Msa0657210-mRNA-1:cds;Parent=Msa0657210-mRNA-1
chr4_3 CDS 66761043 66761120 66761043 ID=Msa0657210-mRNA-1:cds;Parent=Msa0657210-mRNA-1
chr4_3 CDS 66761217 66761377 66761217 ID=Msa0657210-mRNA-1:cds;Parent=Msa0657210-mRNA-1
chr4_3 CDS 66761620 66761832 66761620 ID=Msa0657210-mRNA-1:cds;Parent=Msa0657210-mRNA-1
chr4_3 three_prime_UTR 66761833 66762115 66761833 ID=Msa0657210-mRNA-1:three_prime_utr;Parent=Msa0657210-mRNA-1
Gene Sequence

>Msa0657210

ATGGCAGCTATAAAGCCAGAAGAGATAAGTCATTCACCAATGGATCAACTTCAGGGTTTAGAGTATTGTATAGATTCAAATCCATCTTGGGTGGAGACAATACTGCTTGGTTTTCAACATTATATTTTGGCATTAGGAACTGCAGTTATGATTCCTTCATTTCTTGTTCCTTCAATGGGTGGAAATGATGATGATAAAGTAAGGGTGGTACAAACTCTACTTTTTGTTGAAGGAATTAATACACTTTTGCAAACACTGTTTGGAACCCGGTTACCAACAGTGATAGGAGGATCATATGCATTCATGGTCCCCATTGTATCCATTATTCGTGACCCTTCTTTTGCAATGATAGATGACCCACAATTGAGGTTTCTTAGCACAATGAGAGCAGTCCAAGGTGCACTAATTGTAGCATCCAGCATACAAATTATTTTGGGATTTAGTCAAATATGGGCTATTTGTTCTAGATTTTTCAGCCCACTTGGAATGGTTCCAGTAATTACATTAGTTGGTTTTGGATTATTTGACAGAGGTTTCCCTATGGTGGGGACTTGTGTTGAAATTGGAATTCCCATGCTAATCTTGTTTGTAGTGTTCTCTCAGTACTTGAAAAATTTTCAGACAAGACAAGTACCGATACTAGAGAGATTTGCTCTACTCATAACAACCACAGTGATATGGGCATATGCACATCTATTGACAGCGAGTGGAGCATACAAACACCGGCCGGATGTAACTCAACATAGTTGTAGGACAGACAGGGCTAATCTCATTTCTTCCGCTCCTTGGATAAAGATTCCATACCCTCTTGAGTGGGGTGCTCCTACATTTGATGCTGGCCACTCTTTTGGAATGATGGCTGCTGTTTTAGTCTCATTAGTTGAGTCAACTGGAGCATTCAAAGCTGCATCGCGTCTAGCAAGTGCCACACCACCGCCTGCTCATGTCCTGAGCCGTGGTATCGGTTGGCAGGGAATTGGAATTTTGCTGAATGGCCTTTTCGGAACACTAACCGGTTCAACAGTTTCTGTAGAGAATGTAGGACTCCTAGGAAGCAACCGTGTTGGCAGCCGAAGGGTTATTCAAGTTTCTGCTGGATTTATGATATTCTTTGCAATGTTAGGTAAATTTGGAGCTTTATTTGCATCAATACCATTCCCTATTTTTGCTGCTATATACTGTGTTTTGTTTGGTCTTGTAGCTTCTGTAGGGCTATCATTTTTGCAATTCACCAACATGAATTCAATGAGGAACCTCTTTATCACTGGTGTTGCCCTTTTCTTAGGCTTGTCTATTCCTGAATATTTCAGAGAATACACTATCAGGGCCTTTCATGGTCCTGCTCATACCAAAGCTGGATGGTTCAATGACTTCCTGAATACCATCTTCTATTCTTCACCAACTGTTGCATTGATTATTGCTGTGTTCTTGGACAATACTCTTGACTATAAGGACAGTGCCAAAGATAGAGGAATGCCATGGTGGGCTAAGTTTAGAACATTTAAAGCAGATAGCAGAAATGAAGAGTTCTACTCTCTTCCTTTCAATCTCAACCGCTTCTTTCCTCCATCATAG
Protein sequence

>Msa0657210

MAAIKPEEISHSPMDQLQGLEYCIDSNPSWVETILLGFQHYILALGTAVMIPSFLVPSMGGNDDDKVRVVQTLLFVEGINTLLQTLFGTRLPTVIGGSYAFMVPIVSIIRDPSFAMIDDPQLRFLSTMRAVQGALIVASSIQIILGFSQIWAICSRFFSPLGMVPVITLVGFGLFDRGFPMVGTCVEIGIPMLILFVVFSQYLKNFQTRQVPILERFALLITTTVIWAYAHLLTASGAYKHRPDVTQHSCRTDRANLISSAPWIKIPYPLEWGAPTFDAGHSFGMMAAVLVSLVESTGAFKAASRLASATPPPAHVLSRGIGWQGIGILLNGLFGTLTGSTVSVENVGLLGSNRVGSRRVIQVSAGFMIFFAMLGKFGALFASIPFPIFAAIYCVLFGLVASVGLSFLQFTNMNSMRNLFITGVALFLGLSIPEYFREYTIRAFHGPAHTKAGWFNDFLNTIFYSSPTVALIIAVFLDNTLDYKDSAKDRGMPWWAKFRTFKADSRNEEFYSLPFNLNRFFPPS*