Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0170770 | XP_013468810.2 | 80.755 | 265 | 0 | 1 | 1 | 214 | 25 | 289 | 1.94e-146 | 419 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0170770 | sp|Q70FG7|DODA_BETVU | 52.874 | 261 | 71 | 2 | 3 | 211 | 7 | 267 | 2.15e-94 | 279 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0170770 | A0A396JW51 | 80.755 | 265 | 0 | 1 | 1 | 214 | 25 | 289 | 9.24e-147 | 419 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0030800 | Msa0170770 | 0.822050 | 2.914950e-53 | -8.615850e-47 |
| Msa0043740 | Msa0170770 | 0.826637 | 2.431957e-54 | -8.615850e-47 |
| Msa0059440 | Msa0170770 | 0.844825 | 5.946537e-59 | -8.615850e-47 |
| Msa0059900 | Msa0170770 | 0.820149 | 7.989135e-53 | -8.615850e-47 |
| Msa0078210 | Msa0170770 | 0.822768 | 1.985558e-53 | -8.615850e-47 |
| Msa0090090 | Msa0170770 | 0.842282 | 2.843473e-58 | -8.615850e-47 |
| Msa0090380 | Msa0170770 | 0.884541 | 1.755680e-71 | -8.615850e-47 |
| Msa0094710 | Msa0170770 | 0.818230 | 2.185026e-52 | -8.615850e-47 |
| Msa0104070 | Msa0170770 | 0.830354 | 3.078700e-55 | -8.615850e-47 |
| Msa0104810 | Msa0170770 | 0.837598 | 4.729622e-57 | -8.615850e-47 |
| Msa0119430 | Msa0170770 | 0.860120 | 2.577949e-63 | -8.615850e-47 |
| Msa0137560 | Msa0170770 | 0.840873 | 6.687191e-58 | -8.615850e-47 |
| Msa0137860 | Msa0170770 | 0.881522 | 2.238364e-70 | -8.615850e-47 |
| Msa0139680 | Msa0170770 | 0.804416 | 2.183287e-49 | -8.615850e-47 |
| Msa0151170 | Msa0170770 | 0.810863 | 9.330644e-51 | -8.615850e-47 |
| Msa0170770 | Msa0182560 | 0.830753 | 2.458943e-55 | -8.615850e-47 |
| Msa0170770 | Msa0187310 | 0.829077 | 6.299161e-55 | -8.615850e-47 |
| Msa0170770 | Msa0193190 | 0.820984 | 5.136757e-53 | -8.615850e-47 |
| Msa0170770 | Msa0196880 | 0.806549 | 7.792665e-50 | -8.615850e-47 |
| Msa0170770 | Msa0203090 | 0.814521 | 1.477178e-51 | -8.615850e-47 |
| Msa0170770 | Msa0224130 | 0.847060 | 1.468652e-59 | -8.615850e-47 |
| Msa0170770 | Msa0264680 | 0.831879 | 1.299788e-55 | -8.615850e-47 |
| Msa0170770 | Msa0265270 | 0.838213 | 3.286344e-57 | -8.615850e-47 |
| Msa0170770 | Msa0265480 | 0.826314 | 2.902908e-54 | -8.615850e-47 |
| Msa0170770 | Msa0266220 | 0.815346 | 9.690750e-52 | -8.615850e-47 |
| Msa0170770 | Msa0273070 | 0.806754 | 7.055507e-50 | -8.615850e-47 |
| Msa0170770 | Msa0276430 | 0.812155 | 4.886926e-51 | -8.615850e-47 |
| Msa0170770 | Msa0287680 | 0.808283 | 3.341827e-50 | -8.615850e-47 |
| Msa0170770 | Msa0302730 | 0.836991 | 6.761643e-57 | -8.615850e-47 |
| Msa0170770 | Msa0306310 | 0.820377 | 7.082814e-53 | -8.615850e-47 |
| Msa0170770 | Msa0316470 | 0.806608 | 7.574010e-50 | -8.615850e-47 |
| Msa0170770 | Msa0345050 | 0.808485 | 3.026099e-50 | -8.615850e-47 |
| Msa0170770 | Msa0345980 | 0.826824 | 2.194142e-54 | -8.615850e-47 |
| Msa0170770 | Msa0367860 | 0.805519 | 1.283600e-49 | -8.615850e-47 |
| Msa0170770 | Msa0393100 | 0.822059 | 2.900170e-53 | -8.615850e-47 |
| Msa0170770 | Msa0402800 | 0.811448 | 6.964570e-51 | -8.615850e-47 |
| Msa0170770 | Msa0414730 | 0.803000 | 4.295304e-49 | -8.615850e-47 |
| Msa0170770 | Msa0443450 | 0.826475 | 2.658665e-54 | -8.615850e-47 |
| Msa0170770 | Msa0484800 | 0.831146 | 1.969249e-55 | -8.615850e-47 |
| Msa0170770 | Msa0488580 | 0.847226 | 1.321893e-59 | -8.615850e-47 |
| Msa0170770 | Msa0497690 | 0.814464 | 1.520233e-51 | -8.615850e-47 |
| Msa0170770 | Msa0497860 | 0.816229 | 6.159288e-52 | -8.615850e-47 |
| Msa0170770 | Msa0534270 | 0.858943 | 5.820093e-63 | -8.615850e-47 |
| Msa0170770 | Msa0545050 | 0.811574 | 6.539663e-51 | -8.615850e-47 |
| Msa0170770 | Msa0584580 | 0.814063 | 1.864744e-51 | -8.615850e-47 |
| Msa0170770 | Msa0584600 | 0.823559 | 1.298026e-53 | -8.615850e-47 |
| Msa0170770 | Msa0588710 | 0.819568 | 1.084983e-52 | -8.615850e-47 |
| Msa0170770 | Msa0590390 | 0.852729 | 3.813123e-61 | -8.615850e-47 |
| Msa0170770 | Msa0592660 | 0.812618 | 3.871474e-51 | -8.615850e-47 |
| Msa0170770 | Msa0600590 | 0.802244 | 6.149645e-49 | -8.615850e-47 |
| Msa0170770 | Msa0611060 | 0.854213 | 1.429825e-61 | -8.615850e-47 |
| Msa0170770 | Msa0615210 | 0.846045 | 2.778605e-59 | -8.615850e-47 |
| Msa0170770 | Msa0618550 | 0.801847 | 7.422387e-49 | -8.615850e-47 |
| Msa0170770 | Msa0619310 | 0.804070 | 2.577311e-49 | -8.615850e-47 |
| Msa0170770 | Msa0641130 | 0.811231 | 7.762885e-51 | -8.615850e-47 |
| Msa0170770 | Msa0662580 | 0.810718 | 1.002765e-50 | -8.615850e-47 |
| Msa0170770 | Msa0696100 | 0.814819 | 1.268581e-51 | -8.615850e-47 |
| Msa0170770 | Msa0698450 | 0.812293 | 4.559101e-51 | -8.615850e-47 |
| Msa0170770 | Msa0698460 | 0.811020 | 8.627973e-51 | -8.615850e-47 |
| Msa0170770 | Msa0709140 | 0.802047 | 6.751827e-49 | -8.615850e-47 |
| Msa0170770 | Msa0713060 | 0.802709 | 4.933021e-49 | -8.615850e-47 |
| Msa0170770 | Msa0744640 | 0.812326 | 4.484908e-51 | -8.615850e-47 |
| Msa0170770 | Msa0753930 | 0.815254 | 1.015525e-51 | -8.615850e-47 |
| Msa0170770 | Msa0779230 | 0.810040 | 1.404744e-50 | -8.615850e-47 |
| Msa0170770 | Msa0790920 | 0.813949 | 1.975082e-51 | -8.615850e-47 |
| Msa0170770 | Msa0804870 | 0.834015 | 3.826942e-56 | -8.615850e-47 |
| Msa0170770 | Msa0807670 | 0.800638 | 1.312010e-48 | -8.615850e-47 |
| Msa0170770 | Msa0841730 | 0.810914 | 9.092494e-51 | -8.615850e-47 |
| Msa0170770 | Msa0945130 | 0.866972 | 1.927925e-65 | -8.615850e-47 |
| Msa0170770 | Msa0966580 | 0.802779 | 4.771461e-49 | -8.615850e-47 |
| Msa0170770 | Msa1011250 | 0.820607 | 6.273045e-53 | -8.615850e-47 |
| Msa0170770 | Msa1016960 | 0.807037 | 6.146349e-50 | -8.615850e-47 |
| Msa0170770 | Msa1058200 | 0.815673 | 8.193607e-52 | -8.615850e-47 |
| Msa0170770 | Msa1069890 | 0.818536 | 1.861930e-52 | -8.615850e-47 |
| Msa0170770 | Msa1089190 | 0.837063 | 6.484683e-57 | -8.615850e-47 |
| Msa0170770 | Msa1114670 | 0.820872 | 5.452081e-53 | -8.615850e-47 |
| Msa0170770 | Msa1131790 | 0.832418 | 9.560716e-56 | -8.615850e-47 |
| Msa0170770 | Msa1136760 | 0.810382 | 1.185221e-50 | -8.615850e-47 |
| Msa0170770 | Msa1159170 | 0.827459 | 1.546576e-54 | -8.615850e-47 |
| Msa0170770 | Msa1187490 | 0.802903 | 4.498715e-49 | -8.615850e-47 |
| Msa0170770 | Msa1188350 | 0.807528 | 4.837215e-50 | -8.615850e-47 |
| Msa0170770 | Msa1208990 | 0.822009 | 2.978312e-53 | -8.615850e-47 |
| Msa0170770 | Msa1218160 | 0.822542 | 2.240619e-53 | -8.615850e-47 |
| Msa0170770 | Msa1221220 | 0.840365 | 9.087882e-58 | -8.615850e-47 |
| Msa0170770 | Msa1221240 | 0.831237 | 1.870015e-55 | -8.615850e-47 |
| Msa0170770 | Msa1225580 | 0.834604 | 2.722784e-56 | -8.615850e-47 |
| Msa0170770 | Msa1246780 | 0.800819 | 1.205358e-48 | -8.615850e-47 |
| Msa0170770 | Msa1246790 | 0.817984 | 2.483262e-52 | -8.615850e-47 |
| Msa0170770 | Msa1252000 | 0.822218 | 2.664197e-53 | -8.615850e-47 |
| Msa0170770 | Msa1252810 | 0.810760 | 9.819811e-51 | -8.615850e-47 |
| Msa0170770 | Msa1256060 | 0.807299 | 5.410682e-50 | -8.615850e-47 |
| Msa0170770 | Msa1276960 | 0.824959 | 6.083895e-54 | -8.615850e-47 |
| Msa0170770 | Msa1284090 | 0.806174 | 9.350845e-50 | -8.615850e-47 |
| Msa0170770 | Msa1286220 | 0.832547 | 8.880981e-56 | -8.615850e-47 |
| Msa0170770 | Msa1307530 | 0.801539 | 8.586309e-49 | -8.615850e-47 |
| Msa0170770 | Msa1350700 | 0.816962 | 4.219394e-52 | -8.615850e-47 |
| Msa0170770 | Msa1355510 | 0.833013 | 6.805224e-56 | -8.615850e-47 |
| Msa0170770 | Msa1360260 | 0.809517 | 1.819264e-50 | -8.615850e-47 |
| Msa0170770 | Msa1362850 | 0.800891 | 1.164907e-48 | -8.615850e-47 |
| Msa0170770 | Msa1364080 | 0.839597 | 1.440508e-57 | -8.615850e-47 |
| Msa0170770 | Msa1369320 | 0.838527 | 2.728054e-57 | -8.615850e-47 |
| Msa0170770 | Msa1370420 | 0.805698 | 1.177543e-49 | -8.615850e-47 |
| Msa0170770 | Msa1397390 | 0.803289 | 3.743453e-49 | -8.615850e-47 |
| Msa0170770 | Msa1398900 | 0.809652 | 1.702572e-50 | -8.615850e-47 |
| Msa0170770 | Msa1402350 | 0.803418 | 3.519353e-49 | -8.615850e-47 |
| Msa0170770 | Msa1413800 | 0.810597 | 1.065182e-50 | -8.615850e-47 |
| Msa0170770 | Msa1433410 | 0.887810 | 1.028371e-72 | -8.615850e-47 |
| Msa0170770 | Msa1435320 | 0.828833 | 7.215964e-55 | -8.615850e-47 |
| Msa0170770 | Msa1436090 | 0.808108 | 3.640975e-50 | -8.615850e-47 |
| Msa0170770 | Msa1443400 | 0.829537 | 4.869242e-55 | -8.615850e-47 |
| Msa0170770 | Msa1443620 | 0.882472 | 1.012645e-70 | -8.615850e-47 |
| Msa0170770 | Msa1448040 | 0.829473 | 5.046593e-55 | -8.615850e-47 |
| Msa0170770 | Msa1451990 | 0.806008 | 1.013099e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0170770 | MtrunA17_Chr1g0188451 | 80.755 | 265 | 0 | 1 | 1 | 214 | 25 | 289 | 1.78e-150 | 419 |
| Msa0170770 | MtrunA17_Chr6g0477101 | 62.030 | 266 | 49 | 3 | 1 | 214 | 1 | 266 | 1.11e-110 | 317 |
| Msa0170770 | MtrunA17_Chr6g0464111 | 54.110 | 146 | 15 | 2 | 121 | 214 | 1 | 146 | 3.94e-43 | 142 |
| Msa0170770 | MtrunA17_Chr6g0464101 | 88.571 | 35 | 4 | 0 | 76 | 110 | 35 | 69 | 8.07e-15 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0170770 | AT4G15093.1 | 52.157 | 255 | 67 | 3 | 3 | 202 | 4 | 258 | 3.83e-89 | 263 |
Find 64 sgRNAs with CRISPR-Local
Find 258 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTTGTTATCTCTGGTCAT+TGG | 0.280377 | 1_4:-55132052 | Msa0170770:CDS |
| TGCAGGAATTGTTTCATCTA+TGG | 0.287643 | 1_4:+55132127 | None:intergenic |
| CTTCCCATTGCATGTGGCTA+TGG | 0.326906 | 1_4:-55130722 | Msa0170770:CDS |
| TCTTGTTATCTCTGGTCATT+GGG | 0.336206 | 1_4:-55132051 | Msa0170770:CDS |
| TTCACCCTCTTTGCTAACTT+TGG | 0.341100 | 1_4:+55131361 | None:intergenic |
| AACTTTGGAGCCCCTGGTGC+TGG | 0.357532 | 1_4:+55131376 | None:intergenic |
| ATTGTGATTAACAACGTTAA+CGG | 0.372671 | 1_4:+55132013 | None:intergenic |
| TTTGCTAACTTTGGAGCCCC+TGG | 0.388909 | 1_4:+55131370 | None:intergenic |
| AAGGAACTGATCGAAGCATC+TGG | 0.408387 | 1_4:-55131340 | Msa0170770:CDS |
| AATGAAACCATCCATGATTT+CGG | 0.409867 | 1_4:-55131993 | Msa0170770:CDS |
| TCTGCCATTCTTGTTATCTC+TGG | 0.410290 | 1_4:-55132059 | Msa0170770:CDS |
| TATACCAGTATGTCAACTTT+CGG | 0.414509 | 1_4:-55131233 | Msa0170770:CDS |
| TCGGTTTCATCAAATAGAAA+TGG | 0.415828 | 1_4:-55131214 | Msa0170770:CDS |
| AGAACACCCTCATCTTTAAG+AGG | 0.426483 | 1_4:+55131157 | None:intergenic |
| TTCCCATTGCATGTGGCTAT+GGG | 0.428707 | 1_4:-55130721 | Msa0170770:CDS |
| GGTACTTACCATTATAACTT+AGG | 0.430513 | 1_4:-55131193 | Msa0170770:CDS |
| GGATGAGCCACTTTCGCATA+TGG | 0.439113 | 1_4:+55130760 | None:intergenic |
| CAAGGTTATTCATGAGAGTT+GGG | 0.449714 | 1_4:-55130674 | Msa0170770:CDS |
| CATGGAAATTCTTGACATCA+TGG | 0.450298 | 1_4:-55132106 | Msa0170770:CDS |
| ATGATTTCGGTGGCTTTCCT+AGG | 0.454213 | 1_4:-55131980 | Msa0170770:CDS |
| CCAAGGTTATTCATGAGAGT+TGG | 0.456924 | 1_4:-55130675 | Msa0170770:CDS |
| TGATTAACAACGTTAACGGT+TGG | 0.472085 | 1_4:+55132017 | None:intergenic |
| TAGGAAAGCCACCGAAATCA+TGG | 0.473235 | 1_4:+55131982 | None:intergenic |
| CTTTCCTAGGAGCATGTACA+AGG | 0.474154 | 1_4:-55131967 | Msa0170770:intron |
| GAAACCGAAAGTTGACATAC+TGG | 0.474557 | 1_4:+55131229 | None:intergenic |
| TGCAATGGGAAGAAATGATC+AGG | 0.474579 | 1_4:+55130733 | None:intergenic |
| CAGCTCAAGTATCCAGCACC+AGG | 0.488701 | 1_4:-55131388 | Msa0170770:CDS |
| CAAACCTTGTACATGCTCCT+AGG | 0.492861 | 1_4:+55131963 | None:intergenic |
| CTCCCATAGCCACATGCAAT+GGG | 0.493902 | 1_4:+55130719 | None:intergenic |
| AGAATGGCAGATGGTCTCTC+AGG | 0.511823 | 1_4:+55132071 | None:intergenic |
| GCTCCCATAGCCACATGCAA+TGG | 0.521180 | 1_4:+55130718 | None:intergenic |
| CATGTGGCTATGGGAGCTGC+TGG | 0.535183 | 1_4:-55130712 | Msa0170770:CDS |
| CATACTGGTATATCAGCCTC+TGG | 0.544796 | 1_4:+55131244 | None:intergenic |
| GGCTCCAAAGTTAGCAAAGA+GGG | 0.544809 | 1_4:-55131365 | Msa0170770:CDS |
| CCAACTCTCATGAATAACCT+TGG | 0.556818 | 1_4:+55130675 | None:intergenic |
| TCATTTCTTCCCATTGCATG+TGG | 0.560813 | 1_4:-55130728 | Msa0170770:CDS |
| ATTCTTGACATCATGGAAAG+AGG | 0.565403 | 1_4:-55132099 | Msa0170770:CDS |
| GAAGGCGCCATATGCGAAAG+TGG | 0.568307 | 1_4:-55130767 | Msa0170770:CDS |
| ATGACCAGAGATAACAAGAA+TGG | 0.569073 | 1_4:+55132055 | None:intergenic |
| GTTTCATCTATGGCTAGTGT+TGG | 0.573056 | 1_4:+55132137 | None:intergenic |
| ATGCGAAAGTGGCTCATCCA+TGG | 0.576625 | 1_4:-55130756 | Msa0170770:CDS |
| AGCATCTGGGTTGAGTCGAG+TGG | 0.579096 | 1_4:-55131326 | Msa0170770:CDS |
| AATAGCTCCTCTTAAAGATG+AGG | 0.581989 | 1_4:-55131164 | Msa0170770:CDS |
| GATGTCAAGAATTTCCATGC+AGG | 0.582906 | 1_4:+55132110 | None:intergenic |
| AGCTGCTGTGAAACCAAAAG+AGG | 0.584042 | 1_4:+55130630 | None:intergenic |
| TGGTGAGAATTCAAAGGCCA+AGG | 0.591154 | 1_4:-55130692 | Msa0170770:CDS |
| GTTATTCATGAGAGTTGGGA+TGG | 0.593808 | 1_4:-55130670 | Msa0170770:CDS |
| GGGAAGAAATGATCAGGCCA+TGG | 0.597088 | 1_4:+55130739 | None:intergenic |
| ATTCATGAGAGTTGGGATGG+TGG | 0.599479 | 1_4:-55130667 | Msa0170770:CDS |
| AGGAACTGATCGAAGCATCT+GGG | 0.606798 | 1_4:-55131339 | Msa0170770:CDS |
| AAAGTTAGCAAAGAGGGTGA+AGG | 0.608328 | 1_4:-55131359 | Msa0170770:CDS |
| GAAACCATCCATGATTTCGG+TGG | 0.621697 | 1_4:-55131990 | Msa0170770:CDS |
| ATAGCTCCTCTTAAAGATGA+GGG | 0.624747 | 1_4:-55131163 | Msa0170770:intron |
| TAGATGAAACAATTCCTGCA+TGG | 0.625784 | 1_4:-55132124 | Msa0170770:CDS |
| AGCTGCTGGTGAGAATTCAA+AGG | 0.626345 | 1_4:-55130698 | Msa0170770:CDS |
| GTGGGCTTGATCATGGAACA+TGG | 0.640571 | 1_4:-55131288 | Msa0170770:CDS |
| GCTCAAGTATCCAGCACCAG+GGG | 0.654006 | 1_4:-55131386 | Msa0170770:CDS |
| AAAGCCACCGAAATCATGGA+TGG | 0.655429 | 1_4:+55131986 | None:intergenic |
| AGCTCAAGTATCCAGCACCA+GGG | 0.658115 | 1_4:-55131387 | Msa0170770:CDS |
| GAGATAACAAGAATGGCAGA+TGG | 0.658261 | 1_4:+55132062 | None:intergenic |
| TCTCATGTTGATGTATCCAG+AGG | 0.674561 | 1_4:-55131260 | Msa0170770:CDS |
| TCTGGATACATCAACATGAG+AGG | 0.675165 | 1_4:+55131262 | None:intergenic |
| GGGCTCCAAAGTTAGCAAAG+AGG | 0.677936 | 1_4:-55131366 | Msa0170770:CDS |
| TGGGCTTGATCATGGAACAT+GGG | 0.724784 | 1_4:-55131287 | Msa0170770:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGATAGATATAAAACAAAAA+TGG | + | chr1_4:55131422-55131441 | None:intergenic | 15.0% |
| !! | AGATAGATATAAAACAAAAA+TGG | + | chr1_4:55131422-55131441 | None:intergenic | 15.0% |
| !! | CAAGATTTATTCCATTAAAT+GGG | + | chr1_4:55131061-55131080 | None:intergenic | 20.0% |
| !!! | GCTACAATTTCTTAATTTTT+CGG | + | chr1_4:55131121-55131140 | None:intergenic | 20.0% |
| !! | CAAGATTTATTCCATTAAAT+GGG | + | chr1_4:55131061-55131080 | None:intergenic | 20.0% |
| !!! | GCTACAATTTCTTAATTTTT+CGG | + | chr1_4:55131121-55131140 | None:intergenic | 20.0% |
| !! | ACGCAAAAGTATACAAAAAA+TGG | - | chr1_4:55130658-55130677 | Msa0170770:CDS | 25.0% |
| !! | TATACAAAAAATGGCATTGA+AGG | - | chr1_4:55130667-55130686 | Msa0170770:CDS | 25.0% |
| ! | ATTGTGATTAACAACGTTAA+CGG | + | chr1_4:55130843-55130862 | None:intergenic | 25.0% |
| ! | ATTACATCTTGAAATTTGAG+CGG | - | chr1_4:55130987-55131006 | Msa0170770:intron | 25.0% |
| ! | TTTATTCCATTAAATGGGAT+CGG | + | chr1_4:55131056-55131075 | None:intergenic | 25.0% |
| ! | CCAAGATTTATTCCATTAAA+TGG | + | chr1_4:55131062-55131081 | None:intergenic | 25.0% |
| ! | CCATTTAATGGAATAAATCT+TGG | - | chr1_4:55131059-55131078 | Msa0170770:intron | 25.0% |
| ! | AAGAAATTGTAGCAATAGAT+TGG | - | chr1_4:55131128-55131147 | Msa0170770:intron | 25.0% |
| ! | ATATGCATACATTACACATT+AGG | - | chr1_4:55131183-55131202 | Msa0170770:CDS | 25.0% |
| !!! | TTGCTTTTCCTAAGTTATAA+TGG | + | chr1_4:55131671-55131690 | None:intergenic | 25.0% |
| !! | ACGCAAAAGTATACAAAAAA+TGG | - | chr1_4:55130658-55130677 | Msa0170770:CDS | 25.0% |
| !! | TATACAAAAAATGGCATTGA+AGG | - | chr1_4:55130667-55130686 | Msa0170770:CDS | 25.0% |
| ! | ATTGTGATTAACAACGTTAA+CGG | + | chr1_4:55130843-55130862 | None:intergenic | 25.0% |
| ! | ATTACATCTTGAAATTTGAG+CGG | - | chr1_4:55130987-55131006 | Msa0170770:intron | 25.0% |
| ! | TTTATTCCATTAAATGGGAT+CGG | + | chr1_4:55131056-55131075 | None:intergenic | 25.0% |
| ! | CCAAGATTTATTCCATTAAA+TGG | + | chr1_4:55131062-55131081 | None:intergenic | 25.0% |
| ! | CCATTTAATGGAATAAATCT+TGG | - | chr1_4:55131059-55131078 | Msa0170770:intron | 25.0% |
| ! | AAGAAATTGTAGCAATAGAT+TGG | - | chr1_4:55131128-55131147 | Msa0170770:intron | 25.0% |
| ! | ATATGCATACATTACACATT+AGG | - | chr1_4:55131183-55131202 | Msa0170770:CDS | 25.0% |
| !!! | TTGCTTTTCCTAAGTTATAA+TGG | + | chr1_4:55131671-55131690 | None:intergenic | 25.0% |
| ! | GAAACGTTTTACATATCACA+TGG | - | chr1_4:55130689-55130708 | Msa0170770:CDS | 30.0% |
| AATGAAACCATCCATGATTT+CGG | - | chr1_4:55130860-55130879 | Msa0170770:intron | 30.0% | |
| GATTGGATAAACAAACATTG+AGG | - | chr1_4:55131145-55131164 | Msa0170770:intron | 30.0% | |
| GGAATCTGACTTAAACAATT+AGG | + | chr1_4:55131266-55131285 | None:intergenic | 30.0% | |
| !!! | TTTCGGTATCGATTTGTTTT+TGG | - | chr1_4:55131319-55131338 | Msa0170770:CDS | 30.0% |
| TAGCTCTTCAATTGATACTT+AGG | + | chr1_4:55131359-55131378 | None:intergenic | 30.0% | |
| AAAACAAAAATGGACCATTG+TGG | + | chr1_4:55131412-55131431 | None:intergenic | 30.0% | |
| TATACCAGTATGTCAACTTT+CGG | - | chr1_4:55131620-55131639 | Msa0170770:intron | 30.0% | |
| TCGGTTTCATCAAATAGAAA+TGG | - | chr1_4:55131639-55131658 | Msa0170770:intron | 30.0% | |
| GGTACTTACCATTATAACTT+AGG | - | chr1_4:55131660-55131679 | Msa0170770:intron | 30.0% | |
| !! | ATAGTTGCTATTTGACAACA+TGG | + | chr1_4:55131886-55131905 | None:intergenic | 30.0% |
| ! | GAAACGTTTTACATATCACA+TGG | - | chr1_4:55130689-55130708 | Msa0170770:CDS | 30.0% |
| AATGAAACCATCCATGATTT+CGG | - | chr1_4:55130860-55130879 | Msa0170770:intron | 30.0% | |
| GATTGGATAAACAAACATTG+AGG | - | chr1_4:55131145-55131164 | Msa0170770:intron | 30.0% | |
| GGAATCTGACTTAAACAATT+AGG | + | chr1_4:55131266-55131285 | None:intergenic | 30.0% | |
| !!! | TTTCGGTATCGATTTGTTTT+TGG | - | chr1_4:55131319-55131338 | Msa0170770:CDS | 30.0% |
| TAGCTCTTCAATTGATACTT+AGG | + | chr1_4:55131359-55131378 | None:intergenic | 30.0% | |
| AAAACAAAAATGGACCATTG+TGG | + | chr1_4:55131412-55131431 | None:intergenic | 30.0% | |
| TATACCAGTATGTCAACTTT+CGG | - | chr1_4:55131620-55131639 | Msa0170770:intron | 30.0% | |
| TCGGTTTCATCAAATAGAAA+TGG | - | chr1_4:55131639-55131658 | Msa0170770:intron | 30.0% | |
| GGTACTTACCATTATAACTT+AGG | - | chr1_4:55131660-55131679 | Msa0170770:intron | 30.0% | |
| !! | ATAGTTGCTATTTGACAACA+TGG | + | chr1_4:55131886-55131905 | None:intergenic | 30.0% |
| TGCAGGAATTGTTTCATCTA+TGG | + | chr1_4:55130729-55130748 | None:intergenic | 35.0% | |
| TAGATGAAACAATTCCTGCA+TGG | - | chr1_4:55130729-55130748 | Msa0170770:CDS | 35.0% | |
| CATGGAAATTCTTGACATCA+TGG | - | chr1_4:55130747-55130766 | Msa0170770:CDS | 35.0% | |
| ATTCTTGACATCATGGAAAG+AGG | - | chr1_4:55130754-55130773 | Msa0170770:CDS | 35.0% | |
| ATGACCAGAGATAACAAGAA+TGG | + | chr1_4:55130801-55130820 | None:intergenic | 35.0% | |
| ! | TTCTTGTTATCTCTGGTCAT+TGG | - | chr1_4:55130801-55130820 | Msa0170770:intron | 35.0% |
| ! | TCTTGTTATCTCTGGTCATT+GGG | - | chr1_4:55130802-55130821 | Msa0170770:intron | 35.0% |
| TGATTAACAACGTTAACGGT+TGG | + | chr1_4:55130839-55130858 | None:intergenic | 35.0% | |
| TTTCGGTTCTCAAACAGATT+TGG | + | chr1_4:55131104-55131123 | None:intergenic | 35.0% | |
| GCATACATTACACATTAGGT+TGG | - | chr1_4:55131187-55131206 | Msa0170770:CDS | 35.0% | |
| CGATTGAATCATAACTGATC+CGG | - | chr1_4:55131226-55131245 | Msa0170770:CDS | 35.0% | |
| GATTGAATCATAACTGATCC+GGG | - | chr1_4:55131227-55131246 | Msa0170770:CDS | 35.0% | |
| TTAAGTCAGATTCCGAACTT+TGG | - | chr1_4:55131272-55131291 | Msa0170770:CDS | 35.0% | |
| GAAACTAGAGTCCAATCATT+CGG | + | chr1_4:55131303-55131322 | None:intergenic | 35.0% | |
| ! | GAATGATTGGACTCTAGTTT+CGG | - | chr1_4:55131302-55131321 | Msa0170770:CDS | 35.0% |
| GATACTTGAGCTGCAAATAA+AGG | + | chr1_4:55131458-55131477 | None:intergenic | 35.0% | |
| TGGACGAAGATAAAAAACGT+GGG | - | chr1_4:55131547-55131566 | Msa0170770:intron | 35.0% | |
| AATAGCTCCTCTTAAAGATG+AGG | - | chr1_4:55131689-55131708 | Msa0170770:intron | 35.0% | |
| ATAGCTCCTCTTAAAGATGA+GGG | - | chr1_4:55131690-55131709 | Msa0170770:intron | 35.0% | |
| !! | GATGAGGGTGTTCTAATAAT+CGG | - | chr1_4:55131705-55131724 | Msa0170770:intron | 35.0% |
| AATTGCTCTCATGTTATGAG+TGG | + | chr1_4:55131742-55131761 | None:intergenic | 35.0% | |
| ACTCATAACATGAGAGCAAT+TGG | - | chr1_4:55131741-55131760 | Msa0170770:intron | 35.0% | |
| TTAAAAGAATCTCTCGTCGA+AGG | - | chr1_4:55131813-55131832 | Msa0170770:intron | 35.0% | |
| AAATAGCAACTATAGCGTAG+TGG | - | chr1_4:55131893-55131912 | Msa0170770:intron | 35.0% | |
| TTGTTCTGTGATACGTGATT+TGG | - | chr1_4:55131934-55131953 | Msa0170770:intron | 35.0% | |
| CAAGGTTATTCATGAGAGTT+GGG | - | chr1_4:55132179-55132198 | Msa0170770:CDS | 35.0% | |
| !! | GCTTTTTCTTATGCCTCTTT+TGG | - | chr1_4:55132210-55132229 | Msa0170770:five_prime_UTR | 35.0% |
| TGCAGGAATTGTTTCATCTA+TGG | + | chr1_4:55130729-55130748 | None:intergenic | 35.0% | |
| TAGATGAAACAATTCCTGCA+TGG | - | chr1_4:55130729-55130748 | Msa0170770:CDS | 35.0% | |
| CATGGAAATTCTTGACATCA+TGG | - | chr1_4:55130747-55130766 | Msa0170770:CDS | 35.0% | |
| ATTCTTGACATCATGGAAAG+AGG | - | chr1_4:55130754-55130773 | Msa0170770:CDS | 35.0% | |
| ATGACCAGAGATAACAAGAA+TGG | + | chr1_4:55130801-55130820 | None:intergenic | 35.0% | |
| ! | TTCTTGTTATCTCTGGTCAT+TGG | - | chr1_4:55130801-55130820 | Msa0170770:intron | 35.0% |
| ! | TCTTGTTATCTCTGGTCATT+GGG | - | chr1_4:55130802-55130821 | Msa0170770:intron | 35.0% |
| TGATTAACAACGTTAACGGT+TGG | + | chr1_4:55130839-55130858 | None:intergenic | 35.0% | |
| TTTCGGTTCTCAAACAGATT+TGG | + | chr1_4:55131104-55131123 | None:intergenic | 35.0% | |
| GCATACATTACACATTAGGT+TGG | - | chr1_4:55131187-55131206 | Msa0170770:CDS | 35.0% | |
| CGATTGAATCATAACTGATC+CGG | - | chr1_4:55131226-55131245 | Msa0170770:CDS | 35.0% | |
| GATTGAATCATAACTGATCC+GGG | - | chr1_4:55131227-55131246 | Msa0170770:CDS | 35.0% | |
| TTAAGTCAGATTCCGAACTT+TGG | - | chr1_4:55131272-55131291 | Msa0170770:CDS | 35.0% | |
| GAAACTAGAGTCCAATCATT+CGG | + | chr1_4:55131303-55131322 | None:intergenic | 35.0% | |
| ! | GAATGATTGGACTCTAGTTT+CGG | - | chr1_4:55131302-55131321 | Msa0170770:CDS | 35.0% |
| GATACTTGAGCTGCAAATAA+AGG | + | chr1_4:55131458-55131477 | None:intergenic | 35.0% | |
| TGGACGAAGATAAAAAACGT+GGG | - | chr1_4:55131547-55131566 | Msa0170770:intron | 35.0% | |
| AATAGCTCCTCTTAAAGATG+AGG | - | chr1_4:55131689-55131708 | Msa0170770:intron | 35.0% | |
| ATAGCTCCTCTTAAAGATGA+GGG | - | chr1_4:55131690-55131709 | Msa0170770:intron | 35.0% | |
| !! | GATGAGGGTGTTCTAATAAT+CGG | - | chr1_4:55131705-55131724 | Msa0170770:intron | 35.0% |
| AATTGCTCTCATGTTATGAG+TGG | + | chr1_4:55131742-55131761 | None:intergenic | 35.0% | |
| ACTCATAACATGAGAGCAAT+TGG | - | chr1_4:55131741-55131760 | Msa0170770:intron | 35.0% | |
| TTAAAAGAATCTCTCGTCGA+AGG | - | chr1_4:55131813-55131832 | Msa0170770:intron | 35.0% | |
| AAATAGCAACTATAGCGTAG+TGG | - | chr1_4:55131893-55131912 | Msa0170770:intron | 35.0% | |
| TTGTTCTGTGATACGTGATT+TGG | - | chr1_4:55131934-55131953 | Msa0170770:intron | 35.0% | |
| CAAGGTTATTCATGAGAGTT+GGG | - | chr1_4:55132179-55132198 | Msa0170770:CDS | 35.0% | |
| !! | GCTTTTTCTTATGCCTCTTT+TGG | - | chr1_4:55132210-55132229 | Msa0170770:five_prime_UTR | 35.0% |
| GTTTCATCTATGGCTAGTGT+TGG | + | chr1_4:55130719-55130738 | None:intergenic | 40.0% | |
| GATGTCAAGAATTTCCATGC+AGG | + | chr1_4:55130746-55130765 | None:intergenic | 40.0% | |
| GAGATAACAAGAATGGCAGA+TGG | + | chr1_4:55130794-55130813 | None:intergenic | 40.0% | |
| ! | TCTGCCATTCTTGTTATCTC+TGG | - | chr1_4:55130794-55130813 | Msa0170770:intron | 40.0% |
| ! | GTTTTCCAATCTCTCCACAA+TGG | - | chr1_4:55131395-55131414 | Msa0170770:intron | 40.0% |
| TGAGCTGCAAATAAAGGAAC+AGG | + | chr1_4:55131452-55131471 | None:intergenic | 40.0% | |
| TTCACCCTCTTTGCTAACTT+TGG | + | chr1_4:55131495-55131514 | None:intergenic | 40.0% | |
| AAAGTTAGCAAAGAGGGTGA+AGG | - | chr1_4:55131494-55131513 | Msa0170770:intron | 40.0% | |
| GTGGACGAAGATAAAAAACG+TGG | - | chr1_4:55131546-55131565 | Msa0170770:intron | 40.0% | |
| AAAAAACGTGGGCTTGATCA+TGG | - | chr1_4:55131558-55131577 | Msa0170770:intron | 40.0% | |
| TCTGGATACATCAACATGAG+AGG | + | chr1_4:55131594-55131613 | None:intergenic | 40.0% | |
| TCTCATGTTGATGTATCCAG+AGG | - | chr1_4:55131593-55131612 | Msa0170770:intron | 40.0% | |
| GAAACCGAAAGTTGACATAC+TGG | + | chr1_4:55131627-55131646 | None:intergenic | 40.0% | |
| AGAACACCCTCATCTTTAAG+AGG | + | chr1_4:55131699-55131718 | None:intergenic | 40.0% | |
| GGTGTTCTAATAATCGGATC+CGG | - | chr1_4:55131711-55131730 | Msa0170770:intron | 40.0% | |
| ! | GACGAGAGATTCTTTTAACC+AGG | + | chr1_4:55131811-55131830 | None:intergenic | 40.0% |
| CATAAACCACTACGAAGAGA+AGG | - | chr1_4:55132068-55132087 | Msa0170770:CDS | 40.0% | |
| TGCAATGGGAAGAAATGATC+AGG | + | chr1_4:55132123-55132142 | None:intergenic | 40.0% | |
| TCATTTCTTCCCATTGCATG+TGG | - | chr1_4:55132125-55132144 | Msa0170770:CDS | 40.0% | |
| CCAACTCTCATGAATAACCT+TGG | + | chr1_4:55132181-55132200 | None:intergenic | 40.0% | |
| CCAAGGTTATTCATGAGAGT+TGG | - | chr1_4:55132178-55132197 | Msa0170770:CDS | 40.0% | |
| GTTATTCATGAGAGTTGGGA+TGG | - | chr1_4:55132183-55132202 | Msa0170770:exon | 40.0% | |
| GTTTCATCTATGGCTAGTGT+TGG | + | chr1_4:55130719-55130738 | None:intergenic | 40.0% | |
| GATGTCAAGAATTTCCATGC+AGG | + | chr1_4:55130746-55130765 | None:intergenic | 40.0% | |
| GAGATAACAAGAATGGCAGA+TGG | + | chr1_4:55130794-55130813 | None:intergenic | 40.0% | |
| ! | TCTGCCATTCTTGTTATCTC+TGG | - | chr1_4:55130794-55130813 | Msa0170770:intron | 40.0% |
| ! | GTTTTCCAATCTCTCCACAA+TGG | - | chr1_4:55131395-55131414 | Msa0170770:intron | 40.0% |
| TGAGCTGCAAATAAAGGAAC+AGG | + | chr1_4:55131452-55131471 | None:intergenic | 40.0% | |
| TTCACCCTCTTTGCTAACTT+TGG | + | chr1_4:55131495-55131514 | None:intergenic | 40.0% | |
| AAAGTTAGCAAAGAGGGTGA+AGG | - | chr1_4:55131494-55131513 | Msa0170770:intron | 40.0% | |
| GTGGACGAAGATAAAAAACG+TGG | - | chr1_4:55131546-55131565 | Msa0170770:intron | 40.0% | |
| AAAAAACGTGGGCTTGATCA+TGG | - | chr1_4:55131558-55131577 | Msa0170770:intron | 40.0% | |
| TCTGGATACATCAACATGAG+AGG | + | chr1_4:55131594-55131613 | None:intergenic | 40.0% | |
| TCTCATGTTGATGTATCCAG+AGG | - | chr1_4:55131593-55131612 | Msa0170770:intron | 40.0% | |
| GAAACCGAAAGTTGACATAC+TGG | + | chr1_4:55131627-55131646 | None:intergenic | 40.0% | |
| AGAACACCCTCATCTTTAAG+AGG | + | chr1_4:55131699-55131718 | None:intergenic | 40.0% | |
| GGTGTTCTAATAATCGGATC+CGG | - | chr1_4:55131711-55131730 | Msa0170770:intron | 40.0% | |
| ! | GACGAGAGATTCTTTTAACC+AGG | + | chr1_4:55131811-55131830 | None:intergenic | 40.0% |
| CATAAACCACTACGAAGAGA+AGG | - | chr1_4:55132068-55132087 | Msa0170770:CDS | 40.0% | |
| TGCAATGGGAAGAAATGATC+AGG | + | chr1_4:55132123-55132142 | None:intergenic | 40.0% | |
| TCATTTCTTCCCATTGCATG+TGG | - | chr1_4:55132125-55132144 | Msa0170770:CDS | 40.0% | |
| CCAACTCTCATGAATAACCT+TGG | + | chr1_4:55132181-55132200 | None:intergenic | 40.0% | |
| CCAAGGTTATTCATGAGAGT+TGG | - | chr1_4:55132178-55132197 | Msa0170770:CDS | 40.0% | |
| GTTATTCATGAGAGTTGGGA+TGG | - | chr1_4:55132183-55132202 | Msa0170770:exon | 40.0% | |
| GAAACCATCCATGATTTCGG+TGG | - | chr1_4:55130863-55130882 | Msa0170770:intron | 45.0% | |
| AAAGCCACCGAAATCATGGA+TGG | + | chr1_4:55130870-55130889 | None:intergenic | 45.0% | |
| TAGGAAAGCCACCGAAATCA+TGG | + | chr1_4:55130874-55130893 | None:intergenic | 45.0% | |
| ATGATTTCGGTGGCTTTCCT+AGG | - | chr1_4:55130873-55130892 | Msa0170770:intron | 45.0% | |
| ! | CTTTCCTAGGAGCATGTACA+AGG | - | chr1_4:55130886-55130905 | Msa0170770:intron | 45.0% |
| CAAACCTTGTACATGCTCCT+AGG | + | chr1_4:55130893-55130912 | None:intergenic | 45.0% | |
| GTGTAGCCGATCCCATTTAA+TGG | - | chr1_4:55131047-55131066 | Msa0170770:intron | 45.0% | |
| TTAGGCCATCTTTGCTTACC+CGG | + | chr1_4:55131248-55131267 | None:intergenic | 45.0% | |
| ! | CATTCGGTGGAACCAAAGTT+CGG | + | chr1_4:55131287-55131306 | None:intergenic | 45.0% |
| ! | CTTTGGTTCCACCGAATGAT+TGG | - | chr1_4:55131289-55131308 | Msa0170770:CDS | 45.0% |
| ACTAGAGTCCAATCATTCGG+TGG | + | chr1_4:55131300-55131319 | None:intergenic | 45.0% | |
| ATGGACCATTGTGGAGAGAT+TGG | + | chr1_4:55131403-55131422 | None:intergenic | 45.0% | |
| GGCTCCAAAGTTAGCAAAGA+GGG | - | chr1_4:55131488-55131507 | Msa0170770:intron | 45.0% | |
| ! | AAGGAACTGATCGAAGCATC+TGG | - | chr1_4:55131513-55131532 | Msa0170770:intron | 45.0% |
| ! | AGGAACTGATCGAAGCATCT+GGG | - | chr1_4:55131514-55131533 | Msa0170770:intron | 45.0% |
| TGGGCTTGATCATGGAACAT+GGG | - | chr1_4:55131566-55131585 | Msa0170770:intron | 45.0% | |
| CATACTGGTATATCAGCCTC+TGG | + | chr1_4:55131612-55131631 | None:intergenic | 45.0% | |
| CATGTTATGAGTGGCACTTC+CGG | + | chr1_4:55131733-55131752 | None:intergenic | 45.0% | |
| AAGAATCTCTCGTCGAAGGA+AGG | - | chr1_4:55131817-55131836 | Msa0170770:intron | 45.0% | |
| TGTTGTCAAACTGCAGCTAG+TGG | - | chr1_4:55131964-55131983 | Msa0170770:intron | 45.0% | |
| TGCTCAATGTTGCAGATACG+AGG | - | chr1_4:55132044-55132063 | Msa0170770:CDS | 45.0% | |
| TTCCCATTGCATGTGGCTAT+GGG | - | chr1_4:55132132-55132151 | Msa0170770:CDS | 45.0% | |
| AGCTGCTGGTGAGAATTCAA+AGG | - | chr1_4:55132155-55132174 | Msa0170770:CDS | 45.0% | |
| TGGTGAGAATTCAAAGGCCA+AGG | - | chr1_4:55132161-55132180 | Msa0170770:CDS | 45.0% | |
| ATTCATGAGAGTTGGGATGG+TGG | - | chr1_4:55132186-55132205 | Msa0170770:exon | 45.0% | |
| AGCTGCTGTGAAACCAAAAG+AGG | + | chr1_4:55132226-55132245 | None:intergenic | 45.0% | |
| GAAACCATCCATGATTTCGG+TGG | - | chr1_4:55130863-55130882 | Msa0170770:intron | 45.0% | |
| AAAGCCACCGAAATCATGGA+TGG | + | chr1_4:55130870-55130889 | None:intergenic | 45.0% | |
| TAGGAAAGCCACCGAAATCA+TGG | + | chr1_4:55130874-55130893 | None:intergenic | 45.0% | |
| ATGATTTCGGTGGCTTTCCT+AGG | - | chr1_4:55130873-55130892 | Msa0170770:intron | 45.0% | |
| ! | CTTTCCTAGGAGCATGTACA+AGG | - | chr1_4:55130886-55130905 | Msa0170770:intron | 45.0% |
| CAAACCTTGTACATGCTCCT+AGG | + | chr1_4:55130893-55130912 | None:intergenic | 45.0% | |
| GTGTAGCCGATCCCATTTAA+TGG | - | chr1_4:55131047-55131066 | Msa0170770:intron | 45.0% | |
| TTAGGCCATCTTTGCTTACC+CGG | + | chr1_4:55131248-55131267 | None:intergenic | 45.0% | |
| ! | CATTCGGTGGAACCAAAGTT+CGG | + | chr1_4:55131287-55131306 | None:intergenic | 45.0% |
| ! | CTTTGGTTCCACCGAATGAT+TGG | - | chr1_4:55131289-55131308 | Msa0170770:CDS | 45.0% |
| ACTAGAGTCCAATCATTCGG+TGG | + | chr1_4:55131300-55131319 | None:intergenic | 45.0% | |
| ATGGACCATTGTGGAGAGAT+TGG | + | chr1_4:55131403-55131422 | None:intergenic | 45.0% | |
| GGCTCCAAAGTTAGCAAAGA+GGG | - | chr1_4:55131488-55131507 | Msa0170770:intron | 45.0% | |
| ! | AAGGAACTGATCGAAGCATC+TGG | - | chr1_4:55131513-55131532 | Msa0170770:intron | 45.0% |
| ! | AGGAACTGATCGAAGCATCT+GGG | - | chr1_4:55131514-55131533 | Msa0170770:intron | 45.0% |
| TGGGCTTGATCATGGAACAT+GGG | - | chr1_4:55131566-55131585 | Msa0170770:intron | 45.0% | |
| CATACTGGTATATCAGCCTC+TGG | + | chr1_4:55131612-55131631 | None:intergenic | 45.0% | |
| CATGTTATGAGTGGCACTTC+CGG | + | chr1_4:55131733-55131752 | None:intergenic | 45.0% | |
| AAGAATCTCTCGTCGAAGGA+AGG | - | chr1_4:55131817-55131836 | Msa0170770:intron | 45.0% | |
| TGTTGTCAAACTGCAGCTAG+TGG | - | chr1_4:55131964-55131983 | Msa0170770:intron | 45.0% | |
| TGCTCAATGTTGCAGATACG+AGG | - | chr1_4:55132044-55132063 | Msa0170770:CDS | 45.0% | |
| TTCCCATTGCATGTGGCTAT+GGG | - | chr1_4:55132132-55132151 | Msa0170770:CDS | 45.0% | |
| AGCTGCTGGTGAGAATTCAA+AGG | - | chr1_4:55132155-55132174 | Msa0170770:CDS | 45.0% | |
| TGGTGAGAATTCAAAGGCCA+AGG | - | chr1_4:55132161-55132180 | Msa0170770:CDS | 45.0% | |
| ATTCATGAGAGTTGGGATGG+TGG | - | chr1_4:55132186-55132205 | Msa0170770:exon | 45.0% | |
| AGCTGCTGTGAAACCAAAAG+AGG | + | chr1_4:55132226-55132245 | None:intergenic | 45.0% | |
| AGAATGGCAGATGGTCTCTC+AGG | + | chr1_4:55130785-55130804 | None:intergenic | 50.0% | |
| CTGATCCGGGTAAGCAAAGA+TGG | - | chr1_4:55131240-55131259 | Msa0170770:CDS | 50.0% | |
| AGCTCAAGTATCCAGCACCA+GGG | - | chr1_4:55131466-55131485 | Msa0170770:intron | 50.0% | |
| !! | TTTGCTAACTTTGGAGCCCC+TGG | + | chr1_4:55131486-55131505 | None:intergenic | 50.0% |
| GGGCTCCAAAGTTAGCAAAG+AGG | - | chr1_4:55131487-55131506 | Msa0170770:intron | 50.0% | |
| GTGGGCTTGATCATGGAACA+TGG | - | chr1_4:55131565-55131584 | Msa0170770:intron | 50.0% | |
| GAATCAAATGCCAGAGCCCA+GGG | + | chr1_4:55131789-55131808 | None:intergenic | 50.0% | |
| ! | GGATGAGCCACTTTCGCATA+TGG | + | chr1_4:55132096-55132115 | None:intergenic | 50.0% |
| ATGCGAAAGTGGCTCATCCA+TGG | - | chr1_4:55132097-55132116 | Msa0170770:CDS | 50.0% | |
| GGGAAGAAATGATCAGGCCA+TGG | + | chr1_4:55132117-55132136 | None:intergenic | 50.0% | |
| CTTCCCATTGCATGTGGCTA+TGG | - | chr1_4:55132131-55132150 | Msa0170770:CDS | 50.0% | |
| CTCCCATAGCCACATGCAAT+GGG | + | chr1_4:55132137-55132156 | None:intergenic | 50.0% | |
| AGAATGGCAGATGGTCTCTC+AGG | + | chr1_4:55130785-55130804 | None:intergenic | 50.0% | |
| CTGATCCGGGTAAGCAAAGA+TGG | - | chr1_4:55131240-55131259 | Msa0170770:CDS | 50.0% | |
| AGCTCAAGTATCCAGCACCA+GGG | - | chr1_4:55131466-55131485 | Msa0170770:intron | 50.0% | |
| !! | TTTGCTAACTTTGGAGCCCC+TGG | + | chr1_4:55131486-55131505 | None:intergenic | 50.0% |
| GGGCTCCAAAGTTAGCAAAG+AGG | - | chr1_4:55131487-55131506 | Msa0170770:intron | 50.0% | |
| GTGGGCTTGATCATGGAACA+TGG | - | chr1_4:55131565-55131584 | Msa0170770:intron | 50.0% | |
| GAATCAAATGCCAGAGCCCA+GGG | + | chr1_4:55131789-55131808 | None:intergenic | 50.0% | |
| ! | GGATGAGCCACTTTCGCATA+TGG | + | chr1_4:55132096-55132115 | None:intergenic | 50.0% |
| ATGCGAAAGTGGCTCATCCA+TGG | - | chr1_4:55132097-55132116 | Msa0170770:CDS | 50.0% | |
| GGGAAGAAATGATCAGGCCA+TGG | + | chr1_4:55132117-55132136 | None:intergenic | 50.0% | |
| CTTCCCATTGCATGTGGCTA+TGG | - | chr1_4:55132131-55132150 | Msa0170770:CDS | 50.0% | |
| CTCCCATAGCCACATGCAAT+GGG | + | chr1_4:55132137-55132156 | None:intergenic | 50.0% | |
| CAGCTCAAGTATCCAGCACC+AGG | - | chr1_4:55131465-55131484 | Msa0170770:intron | 55.0% | |
| GCTCAAGTATCCAGCACCAG+GGG | - | chr1_4:55131467-55131486 | Msa0170770:intron | 55.0% | |
| ! | AGCATCTGGGTTGAGTCGAG+TGG | - | chr1_4:55131527-55131546 | Msa0170770:intron | 55.0% |
| GGAATCAAATGCCAGAGCCC+AGG | + | chr1_4:55131790-55131809 | None:intergenic | 55.0% | |
| ! | GGGCTCTGGCATTTGATTCC+TGG | - | chr1_4:55131790-55131809 | Msa0170770:intron | 55.0% |
| ATGGCGCCTTCTCTTCGTAG+TGG | + | chr1_4:55132077-55132096 | None:intergenic | 55.0% | |
| !! | GAAGGCGCCATATGCGAAAG+TGG | - | chr1_4:55132086-55132105 | Msa0170770:CDS | 55.0% |
| GCTCCCATAGCCACATGCAA+TGG | + | chr1_4:55132138-55132157 | None:intergenic | 55.0% | |
| CAGCTCAAGTATCCAGCACC+AGG | - | chr1_4:55131465-55131484 | Msa0170770:intron | 55.0% | |
| GCTCAAGTATCCAGCACCAG+GGG | - | chr1_4:55131467-55131486 | Msa0170770:intron | 55.0% | |
| ! | AGCATCTGGGTTGAGTCGAG+TGG | - | chr1_4:55131527-55131546 | Msa0170770:intron | 55.0% |
| GGAATCAAATGCCAGAGCCC+AGG | + | chr1_4:55131790-55131809 | None:intergenic | 55.0% | |
| ! | GGGCTCTGGCATTTGATTCC+TGG | - | chr1_4:55131790-55131809 | Msa0170770:intron | 55.0% |
| ATGGCGCCTTCTCTTCGTAG+TGG | + | chr1_4:55132077-55132096 | None:intergenic | 55.0% | |
| !! | GAAGGCGCCATATGCGAAAG+TGG | - | chr1_4:55132086-55132105 | Msa0170770:CDS | 55.0% |
| GCTCCCATAGCCACATGCAA+TGG | + | chr1_4:55132138-55132157 | None:intergenic | 55.0% | |
| !! | AACTTTGGAGCCCCTGGTGC+TGG | + | chr1_4:55131480-55131499 | None:intergenic | 60.0% |
| AGAAAGCCCTCCTCCTCCCT+GGG | - | chr1_4:55131770-55131789 | Msa0170770:intron | 60.0% | |
| TCAAATGCCAGAGCCCAGGG+AGG | + | chr1_4:55131786-55131805 | None:intergenic | 60.0% | |
| CATGTGGCTATGGGAGCTGC+TGG | - | chr1_4:55132141-55132160 | Msa0170770:CDS | 60.0% | |
| !! | AACTTTGGAGCCCCTGGTGC+TGG | + | chr1_4:55131480-55131499 | None:intergenic | 60.0% |
| AGAAAGCCCTCCTCCTCCCT+GGG | - | chr1_4:55131770-55131789 | Msa0170770:intron | 60.0% | |
| TCAAATGCCAGAGCCCAGGG+AGG | + | chr1_4:55131786-55131805 | None:intergenic | 60.0% | |
| CATGTGGCTATGGGAGCTGC+TGG | - | chr1_4:55132141-55132160 | Msa0170770:CDS | 60.0% | |
| GGAGGAGGAGGGCTTTCTCG+AGG | + | chr1_4:55131768-55131787 | None:intergenic | 65.0% | |
| GAGAAAGCCCTCCTCCTCCC+TGG | - | chr1_4:55131769-55131788 | Msa0170770:intron | 65.0% | |
| AATGCCAGAGCCCAGGGAGG+AGG | + | chr1_4:55131783-55131802 | None:intergenic | 65.0% | |
| GGAGGAGGAGGGCTTTCTCG+AGG | + | chr1_4:55131768-55131787 | None:intergenic | 65.0% | |
| GAGAAAGCCCTCCTCCTCCC+TGG | - | chr1_4:55131769-55131788 | Msa0170770:intron | 65.0% | |
| AATGCCAGAGCCCAGGGAGG+AGG | + | chr1_4:55131783-55131802 | None:intergenic | 65.0% | |
| CCAGAGCCCAGGGAGGAGGA+GGG | + | chr1_4:55131779-55131798 | None:intergenic | 70.0% | |
| CCAGAGCCCAGGGAGGAGGA+GGG | + | chr1_4:55131779-55131798 | None:intergenic | 70.0% | |
| CCCTCCTCCTCCCTGGGCTC+TGG | - | chr1_4:55131776-55131795 | Msa0170770:intron | 75.0% | |
| GCCAGAGCCCAGGGAGGAGG+AGG | + | chr1_4:55131780-55131799 | None:intergenic | 75.0% | |
| CCCTCCTCCTCCCTGGGCTC+TGG | - | chr1_4:55131776-55131795 | Msa0170770:intron | 75.0% | |
| GCCAGAGCCCAGGGAGGAGG+AGG | + | chr1_4:55131780-55131799 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 55130621 | 55132254 | 55130621 | ID=Msa0170770;Name=Msa0170770 |
| chr1_4 | mRNA | 55130621 | 55132254 | 55130621 | ID=Msa0170770-mRNA-1;Parent=Msa0170770;Name=Msa0170770-mRNA-1;_AED=0.19;_eAED=0.20;_QI=56|0.5|0.33|1|1|1|3|0|214 |
| chr1_4 | exon | 55130621 | 55130790 | 55130621 | ID=Msa0170770-mRNA-1:exon:16483;Parent=Msa0170770-mRNA-1 |
| chr1_4 | exon | 55131164 | 55131407 | 55131164 | ID=Msa0170770-mRNA-1:exon:16482;Parent=Msa0170770-mRNA-1 |
| chr1_4 | exon | 55131968 | 55132254 | 55131968 | ID=Msa0170770-mRNA-1:exon:16481;Parent=Msa0170770-mRNA-1 |
| chr1_4 | five_prime_UTR | 55132199 | 55132254 | 55132199 | ID=Msa0170770-mRNA-1:five_prime_utr;Parent=Msa0170770-mRNA-1 |
| chr1_4 | CDS | 55131968 | 55132198 | 55131968 | ID=Msa0170770-mRNA-1:cds;Parent=Msa0170770-mRNA-1 |
| chr1_4 | CDS | 55131164 | 55131407 | 55131164 | ID=Msa0170770-mRNA-1:cds;Parent=Msa0170770-mRNA-1 |
| chr1_4 | CDS | 55130621 | 55130790 | 55130621 | ID=Msa0170770-mRNA-1:cds;Parent=Msa0170770-mRNA-1 |
| Gene Sequence |
| Protein sequence |
