Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0192540 | XP_003593635.1 | 93.962 | 265 | 14 | 2 | 1 | 265 | 1 | 263 | 9.86e-106 | 317 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0192540 | sp|Q01197|E6_GOSHI | 36.782 | 261 | 111 | 14 | 1 | 242 | 1 | 226 | 1.55e-18 | 85.1 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0192540 | G7ISF3 | 93.962 | 265 | 14 | 2 | 1 | 265 | 1 | 263 | 4.71e-106 | 317 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0028420 | Msa0192540 | 0.812872 | 3.407192e-51 | -8.615850e-47 |
| Msa0083810 | Msa0192540 | 0.812173 | 4.842775e-51 | -8.615850e-47 |
| Msa0090400 | Msa0192540 | 0.807360 | 5.250146e-50 | -8.615850e-47 |
| Msa0094140 | Msa0192540 | 0.829446 | 5.126003e-55 | -8.615850e-47 |
| Msa0137880 | Msa0192540 | 0.809986 | 1.442901e-50 | -8.615850e-47 |
| Msa0182190 | Msa0192540 | 0.807190 | 5.703679e-50 | -8.615850e-47 |
| Msa0182240 | Msa0192540 | 0.812196 | 4.788726e-51 | -8.615850e-47 |
| Msa0192540 | Msa0192570 | 0.859504 | 3.951495e-63 | -8.615850e-47 |
| Msa0192540 | Msa0225460 | 0.814012 | 1.912797e-51 | -8.615850e-47 |
| Msa0192540 | Msa0225680 | 0.810562 | 1.083931e-50 | -8.615850e-47 |
| Msa0192540 | Msa0225760 | 0.825129 | 5.545505e-54 | -8.615850e-47 |
| Msa0192540 | Msa0225860 | 0.826803 | 2.220313e-54 | -8.615850e-47 |
| Msa0192540 | Msa0230740 | 0.803508 | 3.372130e-49 | -8.615850e-47 |
| Msa0192540 | Msa0260610 | 0.818623 | 1.779364e-52 | -8.615850e-47 |
| Msa0192540 | Msa0260670 | 0.824527 | 7.691865e-54 | -8.615850e-47 |
| Msa0192540 | Msa0261340 | 0.836203 | 1.073903e-56 | -8.615850e-47 |
| Msa0192540 | Msa0267110 | 0.819690 | 1.017454e-52 | -8.615850e-47 |
| Msa0192540 | Msa0272660 | 0.942448 | 7.057363e-102 | -8.615850e-47 |
| Msa0192540 | Msa0277180 | 0.806081 | 9.782901e-50 | -8.615850e-47 |
| Msa0192540 | Msa0292400 | 0.814087 | 1.841791e-51 | -8.615850e-47 |
| Msa0192540 | Msa0316810 | 0.800968 | 1.123576e-48 | -8.615850e-47 |
| Msa0192540 | Msa0465410 | 0.802381 | 5.765098e-49 | -8.615850e-47 |
| Msa0192540 | Msa0467490 | 0.801303 | 9.594314e-49 | -8.615850e-47 |
| Msa0192540 | Msa0511270 | 0.802766 | 4.800385e-49 | -8.615850e-47 |
| Msa0192540 | Msa0547900 | 0.820319 | 7.302387e-53 | -8.615850e-47 |
| Msa0192540 | Msa0548470 | 0.813591 | 2.368673e-51 | -8.615850e-47 |
| Msa0192540 | Msa0582450 | 0.801281 | 9.695415e-49 | -8.615850e-47 |
| Msa0192540 | Msa0594310 | 0.800398 | 1.468275e-48 | -8.615850e-47 |
| Msa0192540 | Msa0602880 | 0.819416 | 1.174680e-52 | -8.615850e-47 |
| Msa0192540 | Msa0643300 | 0.802286 | 6.028382e-49 | -8.615850e-47 |
| Msa0192540 | Msa0644410 | 0.800259 | 1.567122e-48 | -8.615850e-47 |
| Msa0192540 | Msa0683570 | 0.831844 | 1.325638e-55 | -8.615850e-47 |
| Msa0192540 | Msa0683740 | 0.800967 | 1.124067e-48 | -8.615850e-47 |
| Msa0192540 | Msa0691980 | 0.806386 | 8.437826e-50 | -8.615850e-47 |
| Msa0192540 | Msa0861600 | 0.801302 | 9.598963e-49 | -8.615850e-47 |
| Msa0192540 | Msa0945110 | 0.803605 | 3.218848e-49 | -8.615850e-47 |
| Msa0192540 | Msa0948290 | 0.819768 | 9.763549e-53 | -8.615850e-47 |
| Msa0192540 | Msa1019430 | 0.819135 | 1.361614e-52 | -8.615850e-47 |
| Msa0192540 | Msa1019470 | 0.809876 | 1.523189e-50 | -8.615850e-47 |
| Msa0192540 | Msa1045140 | 0.811037 | 8.554141e-51 | -8.615850e-47 |
| Msa0192540 | Msa1113340 | 0.806302 | 8.789031e-50 | -8.615850e-47 |
| Msa0192540 | Msa1119940 | 0.801807 | 7.563769e-49 | -8.615850e-47 |
| Msa0192540 | Msa1175180 | 0.810065 | 1.387188e-50 | -8.615850e-47 |
| Msa0192540 | Msa1223470 | 0.800864 | 1.179708e-48 | -8.615850e-47 |
| Msa0192540 | Msa1224930 | 0.808032 | 3.779687e-50 | -8.615850e-47 |
| Msa0192540 | Msa1251930 | 0.809165 | 2.165273e-50 | -8.615850e-47 |
| Msa0192540 | Msa1269480 | 0.819832 | 9.440088e-53 | -8.615850e-47 |
| Msa0192540 | Msa1277150 | 0.818194 | 2.226317e-52 | -8.615850e-47 |
| Msa0192540 | Msa1302830 | 0.801295 | 9.633241e-49 | -8.615850e-47 |
| Msa0192540 | Msa1370010 | 0.800453 | 1.431233e-48 | -8.615850e-47 |
| Msa0192540 | Msa1397400 | 0.809655 | 1.699569e-50 | -8.615850e-47 |
| Msa0192540 | Msa1422420 | 0.821101 | 4.827617e-53 | -8.615850e-47 |
| Msa0192540 | Msa1427200 | 0.800826 | 1.201384e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0192540 | MtrunA17_Chr2g0282691 | 93.962 | 265 | 14 | 2 | 1 | 265 | 1 | 263 | 9.07e-110 | 317 |
| Msa0192540 | MtrunA17_Chr4g0046601 | 56.618 | 136 | 47 | 5 | 131 | 262 | 230 | 357 | 5.68e-22 | 93.6 |
| Msa0192540 | MtrunA17_Chr4g0046601 | 41.791 | 134 | 75 | 2 | 1 | 132 | 1 | 133 | 1.62e-18 | 84.0 |
| Msa0192540 | MtrunA17_Chr2g0324881 | 30.859 | 256 | 117 | 8 | 21 | 255 | 21 | 237 | 5.57e-14 | 69.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 49 sgRNAs with CRISPR-Local
Find 116 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCTCTGGTTTGTTTGTAAC+TGG | 0.131657 | 2_1:-8349999 | None:intergenic |
| TGTAGTTGCCATGGTTATTC+TGG | 0.221088 | 2_1:-8350568 | None:intergenic |
| TTGTGTCACTCAACTCATTT+TGG | 0.248728 | 2_1:-8350226 | None:intergenic |
| CAAAATAGCTATGGCTTATA+TGG | 0.260837 | 2_1:+8350047 | Msa0192540:CDS |
| TAGTACTTGTTATTGTTGTT+GGG | 0.319644 | 2_1:-8350149 | None:intergenic |
| GTAGTACTTGTTATTGTTGT+TGG | 0.324905 | 2_1:-8350150 | None:intergenic |
| TATTACAACAAAGACAGTTT+TGG | 0.329701 | 2_1:+8350197 | Msa0192540:CDS |
| AACTGGGGATTCTTCTTTGT+TGG | 0.334551 | 2_1:-8349982 | None:intergenic |
| ATGAAAGGTGGTTGCTCCTC+TGG | 0.339057 | 2_1:-8350014 | None:intergenic |
| ATTATAATGCTCAGAATAAC+AGG | 0.351179 | 2_1:+8350369 | Msa0192540:CDS |
| GGTGGATGCCGTGGCGGCGG+TGG | 0.353742 | 2_1:-8350093 | None:intergenic |
| ACTGGGGATTCTTCTTTGTT+GGG | 0.370013 | 2_1:-8349981 | None:intergenic |
| CCTCTGGTTTGTTTGTAACT+GGG | 0.383487 | 2_1:-8349998 | None:intergenic |
| TACAACAATAATAATAACTA+TGG | 0.387734 | 2_1:+8350530 | Msa0192540:CDS |
| GATGAATCACCATACATTGT+TGG | 0.414049 | 2_1:-8350479 | None:intergenic |
| TGTTTCTTCAAAGTTAGAAT+TGG | 0.416528 | 2_1:-8350117 | None:intergenic |
| GCTGAAGAATTCACTCTCTC+TGG | 0.421980 | 2_1:-8349925 | None:intergenic |
| GAGTGAACAACAATAATAAC+TGG | 0.430385 | 2_1:+8350507 | Msa0192540:CDS |
| TTCTTCAAAGTTAGAATTGG+TGG | 0.439756 | 2_1:-8350114 | None:intergenic |
| AAATACAATCCAACAATGTA+TGG | 0.452288 | 2_1:+8350470 | Msa0192540:CDS |
| TAAGAGGATGAAAGAAATGT+AGG | 0.456040 | 2_1:-8349871 | None:intergenic |
| GATGCCGTGGCGGCGGTGGA+AGG | 0.457928 | 2_1:-8350089 | None:intergenic |
| GGTGGTGGATGCCGTGGCGG+CGG | 0.460270 | 2_1:-8350096 | None:intergenic |
| CTCTGGTTTGTTTGTAACTG+GGG | 0.464914 | 2_1:-8349997 | None:intergenic |
| AATTATTATAATTATTGTTG+TGG | 0.469980 | 2_1:-8350349 | None:intergenic |
| TGTTGTTGAAGTAGTACTCT+TGG | 0.484835 | 2_1:-8350298 | None:intergenic |
| GCAACAAAAGAGTTGTTAAG+AGG | 0.489505 | 2_1:-8349887 | None:intergenic |
| AGGATGAAAGAAATGTAGGT+TGG | 0.497294 | 2_1:-8349867 | None:intergenic |
| GGATGAAAGAAATGTAGGTT+GGG | 0.498004 | 2_1:-8349866 | None:intergenic |
| TGTAACCATTGTAGTTGCCA+TGG | 0.515915 | 2_1:-8350577 | None:intergenic |
| TTCAAAGTTAGAATTGGTGG+TGG | 0.520386 | 2_1:-8350111 | None:intergenic |
| AGTACTTGTTATTGTTGTTG+GGG | 0.535885 | 2_1:-8350148 | None:intergenic |
| GACACAAAGTACAATGAAGA+AGG | 0.560331 | 2_1:+8350242 | Msa0192540:CDS |
| CCTCAGACACAAAATAGCTA+TGG | 0.562030 | 2_1:+8350038 | Msa0192540:CDS |
| CATTCCTTCCACCGCCGCCA+CGG | 0.564976 | 2_1:+8350085 | Msa0192540:CDS |
| AGAAGGTTACAACTCCATGA+TGG | 0.580265 | 2_1:+8350259 | Msa0192540:CDS |
| AGGTACAATGGTGAGAAACA+AGG | 0.586625 | 2_1:+8350389 | Msa0192540:CDS |
| ATGTATGGTGATTCATCTAG+AGG | 0.598645 | 2_1:+8350485 | Msa0192540:CDS |
| TGTGTCTGAGGAATGAAAGG+TGG | 0.603943 | 2_1:-8350026 | None:intergenic |
| AATAACCATGGCAACTACAA+TGG | 0.610902 | 2_1:+8350572 | Msa0192540:CDS |
| GCTCAGAATAACAGGTACAA+TGG | 0.619912 | 2_1:+8350377 | Msa0192540:CDS |
| AAGGAATGTGATCAGAGTCA+TGG | 0.626750 | 2_1:-8350070 | None:intergenic |
| AGAATTGGTGGTGGATGCCG+TGG | 0.633457 | 2_1:-8350102 | None:intergenic |
| ATTGGTGGTGGATGCCGTGG+CGG | 0.636866 | 2_1:-8350099 | None:intergenic |
| GGTACAATGGTGAGAAACAA+GGG | 0.647160 | 2_1:+8350390 | Msa0192540:CDS |
| AGAAATGTAGGTTGGGAATG+TGG | 0.649922 | 2_1:-8349859 | None:intergenic |
| TCTCTGGCTATAGTTTGTAG+AGG | 0.668021 | 2_1:-8349909 | None:intergenic |
| AATGAGTACCAGAATAACCA+TGG | 0.671041 | 2_1:+8350560 | Msa0192540:CDS |
| CCCAGTTACAAACAAACCAG+AGG | 0.679700 | 2_1:+8349998 | Msa0192540:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTATTATAATTATTGTTG+TGG | - | chr2_1:8350352-8350371 | None:intergenic | 10.0% |
| !! | AATTATTATAATTATTGTTG+TGG | - | chr2_1:8350352-8350371 | None:intergenic | 10.0% |
| !! | TACAACAATAATAATAACTA+TGG | + | chr2_1:8350530-8350549 | Msa0192540:CDS | 15.0% |
| !! | TACAACAATAATAATAACTA+TGG | + | chr2_1:8350530-8350549 | Msa0192540:CDS | 15.0% |
| ! | TGTTTCTTCAAAGTTAGAAT+TGG | - | chr2_1:8350120-8350139 | None:intergenic | 25.0% |
| !!! | TAGTACTTGTTATTGTTGTT+GGG | - | chr2_1:8350152-8350171 | None:intergenic | 25.0% |
| !! | TATTACAACAAAGACAGTTT+TGG | + | chr2_1:8350197-8350216 | Msa0192540:CDS | 25.0% |
| ! | ATTATAATGCTCAGAATAAC+AGG | + | chr2_1:8350369-8350388 | Msa0192540:CDS | 25.0% |
| ! | AAATACAATCCAACAATGTA+TGG | + | chr2_1:8350470-8350489 | Msa0192540:CDS | 25.0% |
| ! | TGTTTCTTCAAAGTTAGAAT+TGG | - | chr2_1:8350120-8350139 | None:intergenic | 25.0% |
| !!! | TAGTACTTGTTATTGTTGTT+GGG | - | chr2_1:8350152-8350171 | None:intergenic | 25.0% |
| !! | TATTACAACAAAGACAGTTT+TGG | + | chr2_1:8350197-8350216 | Msa0192540:CDS | 25.0% |
| ! | ATTATAATGCTCAGAATAAC+AGG | + | chr2_1:8350369-8350388 | Msa0192540:CDS | 25.0% |
| ! | AAATACAATCCAACAATGTA+TGG | + | chr2_1:8350470-8350489 | Msa0192540:CDS | 25.0% |
| TAAGAGGATGAAAGAAATGT+AGG | - | chr2_1:8349874-8349893 | None:intergenic | 30.0% | |
| CAAAATAGCTATGGCTTATA+TGG | + | chr2_1:8350047-8350066 | Msa0192540:CDS | 30.0% | |
| TTCTTCAAAGTTAGAATTGG+TGG | - | chr2_1:8350117-8350136 | None:intergenic | 30.0% | |
| !! | AGTACTTGTTATTGTTGTTG+GGG | - | chr2_1:8350151-8350170 | None:intergenic | 30.0% |
| !! | GTAGTACTTGTTATTGTTGT+TGG | - | chr2_1:8350153-8350172 | None:intergenic | 30.0% |
| !!! | GTTGTTTTGTTTTTCCATCA+TGG | - | chr2_1:8350276-8350295 | None:intergenic | 30.0% |
| GAGTGAACAACAATAATAAC+TGG | + | chr2_1:8350507-8350526 | Msa0192540:CDS | 30.0% | |
| TAAGAGGATGAAAGAAATGT+AGG | - | chr2_1:8349874-8349893 | None:intergenic | 30.0% | |
| CAAAATAGCTATGGCTTATA+TGG | + | chr2_1:8350047-8350066 | Msa0192540:CDS | 30.0% | |
| TTCTTCAAAGTTAGAATTGG+TGG | - | chr2_1:8350117-8350136 | None:intergenic | 30.0% | |
| !! | AGTACTTGTTATTGTTGTTG+GGG | - | chr2_1:8350151-8350170 | None:intergenic | 30.0% |
| !! | GTAGTACTTGTTATTGTTGT+TGG | - | chr2_1:8350153-8350172 | None:intergenic | 30.0% |
| !!! | GTTGTTTTGTTTTTCCATCA+TGG | - | chr2_1:8350276-8350295 | None:intergenic | 30.0% |
| GAGTGAACAACAATAATAAC+TGG | + | chr2_1:8350507-8350526 | Msa0192540:CDS | 30.0% | |
| GGATGAAAGAAATGTAGGTT+GGG | - | chr2_1:8349869-8349888 | None:intergenic | 35.0% | |
| AGGATGAAAGAAATGTAGGT+TGG | - | chr2_1:8349870-8349889 | None:intergenic | 35.0% | |
| GCAACAAAAGAGTTGTTAAG+AGG | - | chr2_1:8349890-8349909 | None:intergenic | 35.0% | |
| ! | TTTTGTGTCTGAGGAATGAA+AGG | - | chr2_1:8350032-8350051 | None:intergenic | 35.0% |
| TTCAAAGTTAGAATTGGTGG+TGG | - | chr2_1:8350114-8350133 | None:intergenic | 35.0% | |
| !! | TTGTGTCACTCAACTCATTT+TGG | - | chr2_1:8350229-8350248 | None:intergenic | 35.0% |
| GACACAAAGTACAATGAAGA+AGG | + | chr2_1:8350242-8350261 | Msa0192540:CDS | 35.0% | |
| TGTTGTTGAAGTAGTACTCT+TGG | - | chr2_1:8350301-8350320 | None:intergenic | 35.0% | |
| ! | GATGAGTGACACAAGATTTT+TGG | + | chr2_1:8350412-8350431 | Msa0192540:CDS | 35.0% |
| !! | AGTGACACAAGATTTTTGGA+AGG | + | chr2_1:8350416-8350435 | Msa0192540:CDS | 35.0% |
| GATGAATCACCATACATTGT+TGG | - | chr2_1:8350482-8350501 | None:intergenic | 35.0% | |
| ATGTATGGTGATTCATCTAG+AGG | + | chr2_1:8350485-8350504 | Msa0192540:CDS | 35.0% | |
| AATGAGTACCAGAATAACCA+TGG | + | chr2_1:8350560-8350579 | Msa0192540:CDS | 35.0% | |
| AATAACCATGGCAACTACAA+TGG | + | chr2_1:8350572-8350591 | Msa0192540:CDS | 35.0% | |
| CAATGGTTACAAAAACCAAG+AGG | + | chr2_1:8350589-8350608 | Msa0192540:CDS | 35.0% | |
| TTACAAAAACCAAGAGGAGT+TGG | + | chr2_1:8350595-8350614 | Msa0192540:CDS | 35.0% | |
| GGATGAAAGAAATGTAGGTT+GGG | - | chr2_1:8349869-8349888 | None:intergenic | 35.0% | |
| AGGATGAAAGAAATGTAGGT+TGG | - | chr2_1:8349870-8349889 | None:intergenic | 35.0% | |
| GCAACAAAAGAGTTGTTAAG+AGG | - | chr2_1:8349890-8349909 | None:intergenic | 35.0% | |
| ! | TTTTGTGTCTGAGGAATGAA+AGG | - | chr2_1:8350032-8350051 | None:intergenic | 35.0% |
| TTCAAAGTTAGAATTGGTGG+TGG | - | chr2_1:8350114-8350133 | None:intergenic | 35.0% | |
| !! | TTGTGTCACTCAACTCATTT+TGG | - | chr2_1:8350229-8350248 | None:intergenic | 35.0% |
| GACACAAAGTACAATGAAGA+AGG | + | chr2_1:8350242-8350261 | Msa0192540:CDS | 35.0% | |
| TGTTGTTGAAGTAGTACTCT+TGG | - | chr2_1:8350301-8350320 | None:intergenic | 35.0% | |
| ! | GATGAGTGACACAAGATTTT+TGG | + | chr2_1:8350412-8350431 | Msa0192540:CDS | 35.0% |
| !! | AGTGACACAAGATTTTTGGA+AGG | + | chr2_1:8350416-8350435 | Msa0192540:CDS | 35.0% |
| GATGAATCACCATACATTGT+TGG | - | chr2_1:8350482-8350501 | None:intergenic | 35.0% | |
| ATGTATGGTGATTCATCTAG+AGG | + | chr2_1:8350485-8350504 | Msa0192540:CDS | 35.0% | |
| AATGAGTACCAGAATAACCA+TGG | + | chr2_1:8350560-8350579 | Msa0192540:CDS | 35.0% | |
| AATAACCATGGCAACTACAA+TGG | + | chr2_1:8350572-8350591 | Msa0192540:CDS | 35.0% | |
| CAATGGTTACAAAAACCAAG+AGG | + | chr2_1:8350589-8350608 | Msa0192540:CDS | 35.0% | |
| TTACAAAAACCAAGAGGAGT+TGG | + | chr2_1:8350595-8350614 | Msa0192540:CDS | 35.0% | |
| ! | AGAAATGTAGGTTGGGAATG+TGG | - | chr2_1:8349862-8349881 | None:intergenic | 40.0% |
| ! | TCTCTGGCTATAGTTTGTAG+AGG | - | chr2_1:8349912-8349931 | None:intergenic | 40.0% |
| ACTGGGGATTCTTCTTTGTT+GGG | - | chr2_1:8349984-8350003 | None:intergenic | 40.0% | |
| AACTGGGGATTCTTCTTTGT+TGG | - | chr2_1:8349985-8350004 | None:intergenic | 40.0% | |
| !! | CTCTGGTTTGTTTGTAACTG+GGG | - | chr2_1:8350000-8350019 | None:intergenic | 40.0% |
| !! | CCTCTGGTTTGTTTGTAACT+GGG | - | chr2_1:8350001-8350020 | None:intergenic | 40.0% |
| !! | TCCTCTGGTTTGTTTGTAAC+TGG | - | chr2_1:8350002-8350021 | None:intergenic | 40.0% |
| !! | CCATAGCTATTTTGTGTCTG+AGG | - | chr2_1:8350041-8350060 | None:intergenic | 40.0% |
| CCTCAGACACAAAATAGCTA+TGG | + | chr2_1:8350038-8350057 | Msa0192540:CDS | 40.0% | |
| AAGGAATGTGATCAGAGTCA+TGG | - | chr2_1:8350073-8350092 | None:intergenic | 40.0% | |
| AGAAGGTTACAACTCCATGA+TGG | + | chr2_1:8350259-8350278 | Msa0192540:CDS | 40.0% | |
| GCTCAGAATAACAGGTACAA+TGG | + | chr2_1:8350377-8350396 | Msa0192540:CDS | 40.0% | |
| AGGTACAATGGTGAGAAACA+AGG | + | chr2_1:8350389-8350408 | Msa0192540:CDS | 40.0% | |
| GGTACAATGGTGAGAAACAA+GGG | + | chr2_1:8350390-8350409 | Msa0192540:CDS | 40.0% | |
| !! | GACACAAGATTTTTGGAAGG+TGG | + | chr2_1:8350419-8350438 | Msa0192540:CDS | 40.0% |
| TGTAGTTGCCATGGTTATTC+TGG | - | chr2_1:8350571-8350590 | None:intergenic | 40.0% | |
| TGTAACCATTGTAGTTGCCA+TGG | - | chr2_1:8350580-8350599 | None:intergenic | 40.0% | |
| ! | GTTCATTTTCCAACTCCTCT+TGG | - | chr2_1:8350607-8350626 | None:intergenic | 40.0% |
| ! | AGAAATGTAGGTTGGGAATG+TGG | - | chr2_1:8349862-8349881 | None:intergenic | 40.0% |
| ! | TCTCTGGCTATAGTTTGTAG+AGG | - | chr2_1:8349912-8349931 | None:intergenic | 40.0% |
| ACTGGGGATTCTTCTTTGTT+GGG | - | chr2_1:8349984-8350003 | None:intergenic | 40.0% | |
| AACTGGGGATTCTTCTTTGT+TGG | - | chr2_1:8349985-8350004 | None:intergenic | 40.0% | |
| !! | CTCTGGTTTGTTTGTAACTG+GGG | - | chr2_1:8350000-8350019 | None:intergenic | 40.0% |
| !! | CCTCTGGTTTGTTTGTAACT+GGG | - | chr2_1:8350001-8350020 | None:intergenic | 40.0% |
| !! | TCCTCTGGTTTGTTTGTAAC+TGG | - | chr2_1:8350002-8350021 | None:intergenic | 40.0% |
| !! | CCATAGCTATTTTGTGTCTG+AGG | - | chr2_1:8350041-8350060 | None:intergenic | 40.0% |
| CCTCAGACACAAAATAGCTA+TGG | + | chr2_1:8350038-8350057 | Msa0192540:CDS | 40.0% | |
| AAGGAATGTGATCAGAGTCA+TGG | - | chr2_1:8350073-8350092 | None:intergenic | 40.0% | |
| AGAAGGTTACAACTCCATGA+TGG | + | chr2_1:8350259-8350278 | Msa0192540:CDS | 40.0% | |
| GCTCAGAATAACAGGTACAA+TGG | + | chr2_1:8350377-8350396 | Msa0192540:CDS | 40.0% | |
| AGGTACAATGGTGAGAAACA+AGG | + | chr2_1:8350389-8350408 | Msa0192540:CDS | 40.0% | |
| GGTACAATGGTGAGAAACAA+GGG | + | chr2_1:8350390-8350409 | Msa0192540:CDS | 40.0% | |
| !! | GACACAAGATTTTTGGAAGG+TGG | + | chr2_1:8350419-8350438 | Msa0192540:CDS | 40.0% |
| TGTAGTTGCCATGGTTATTC+TGG | - | chr2_1:8350571-8350590 | None:intergenic | 40.0% | |
| TGTAACCATTGTAGTTGCCA+TGG | - | chr2_1:8350580-8350599 | None:intergenic | 40.0% | |
| ! | GTTCATTTTCCAACTCCTCT+TGG | - | chr2_1:8350607-8350626 | None:intergenic | 40.0% |
| GCTGAAGAATTCACTCTCTC+TGG | - | chr2_1:8349928-8349947 | None:intergenic | 45.0% | |
| CCCAGTTACAAACAAACCAG+AGG | + | chr2_1:8349998-8350017 | Msa0192540:CDS | 45.0% | |
| TGTGTCTGAGGAATGAAAGG+TGG | - | chr2_1:8350029-8350048 | None:intergenic | 45.0% | |
| GCTGAAGAATTCACTCTCTC+TGG | - | chr2_1:8349928-8349947 | None:intergenic | 45.0% | |
| CCCAGTTACAAACAAACCAG+AGG | + | chr2_1:8349998-8350017 | Msa0192540:CDS | 45.0% | |
| TGTGTCTGAGGAATGAAAGG+TGG | - | chr2_1:8350029-8350048 | None:intergenic | 45.0% | |
| ATGAAAGGTGGTTGCTCCTC+TGG | - | chr2_1:8350017-8350036 | None:intergenic | 50.0% | |
| ATGAAAGGTGGTTGCTCCTC+TGG | - | chr2_1:8350017-8350036 | None:intergenic | 50.0% | |
| !! | AGAATTGGTGGTGGATGCCG+TGG | - | chr2_1:8350105-8350124 | None:intergenic | 55.0% |
| !! | AGAATTGGTGGTGGATGCCG+TGG | - | chr2_1:8350105-8350124 | None:intergenic | 55.0% |
| !! | ATTGGTGGTGGATGCCGTGG+CGG | - | chr2_1:8350102-8350121 | None:intergenic | 60.0% |
| !! | ATTGGTGGTGGATGCCGTGG+CGG | - | chr2_1:8350102-8350121 | None:intergenic | 60.0% |
| CATTCCTTCCACCGCCGCCA+CGG | + | chr2_1:8350085-8350104 | Msa0192540:CDS | 65.0% | |
| CATTCCTTCCACCGCCGCCA+CGG | + | chr2_1:8350085-8350104 | Msa0192540:CDS | 65.0% | |
| GATGCCGTGGCGGCGGTGGA+AGG | - | chr2_1:8350092-8350111 | None:intergenic | 75.0% | |
| !! | GGTGGTGGATGCCGTGGCGG+CGG | - | chr2_1:8350099-8350118 | None:intergenic | 75.0% |
| GATGCCGTGGCGGCGGTGGA+AGG | - | chr2_1:8350092-8350111 | None:intergenic | 75.0% | |
| !! | GGTGGTGGATGCCGTGGCGG+CGG | - | chr2_1:8350099-8350118 | None:intergenic | 75.0% |
| ! | GGTGGATGCCGTGGCGGCGG+TGG | - | chr2_1:8350096-8350115 | None:intergenic | 80.0% |
| ! | GGTGGATGCCGTGGCGGCGG+TGG | - | chr2_1:8350096-8350115 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 8349855 | 8350652 | 8349855 | ID=Msa0192540;Name=Msa0192540 |
| chr2_1 | mRNA | 8349855 | 8350652 | 8349855 | ID=Msa0192540-mRNA-1;Parent=Msa0192540;Name=Msa0192540-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|265 |
| chr2_1 | exon | 8349855 | 8350652 | 8349855 | ID=Msa0192540-mRNA-1:exon:3818;Parent=Msa0192540-mRNA-1 |
| chr2_1 | CDS | 8349855 | 8350652 | 8349855 | ID=Msa0192540-mRNA-1:cds;Parent=Msa0192540-mRNA-1 |
| Gene Sequence |
| Protein sequence |
