Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0272660 | XP_003593635.1 | 93.585 | 265 | 15 | 2 | 1 | 265 | 1 | 263 | 4.60e-105 | 315 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0272660 | sp|Q01197|E6_GOSHI | 36.782 | 261 | 111 | 14 | 1 | 242 | 1 | 226 | 4.30e-18 | 84.0 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0272660 | G7ISF3 | 93.585 | 265 | 15 | 2 | 1 | 265 | 1 | 263 | 2.20e-105 | 315 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0010890 | Msa0272660 | 0.809114 | 2.219906e-50 | -8.615850e-47 |
| Msa0076250 | Msa0272660 | 0.800114 | 1.677706e-48 | -8.615850e-47 |
| Msa0083810 | Msa0272660 | 0.830453 | 2.911671e-55 | -8.615850e-47 |
| Msa0090400 | Msa0272660 | 0.812513 | 4.082084e-51 | -8.615850e-47 |
| Msa0120400 | Msa0272660 | 0.805024 | 1.630007e-49 | -8.615850e-47 |
| Msa0137880 | Msa0272660 | 0.812827 | 3.484942e-51 | -8.615850e-47 |
| Msa0164330 | Msa0272660 | 0.802943 | 4.413754e-49 | -8.615850e-47 |
| Msa0182190 | Msa0272660 | 0.815968 | 7.041855e-52 | -8.615850e-47 |
| Msa0182240 | Msa0272660 | 0.818440 | 1.958532e-52 | -8.615850e-47 |
| Msa0192540 | Msa0272660 | 0.942448 | 7.057363e-102 | -8.615850e-47 |
| Msa0192570 | Msa0272660 | 0.896085 | 5.170638e-76 | -8.615850e-47 |
| Msa0225460 | Msa0272660 | 0.840083 | 1.076185e-57 | -8.615850e-47 |
| Msa0225680 | Msa0272660 | 0.838134 | 3.443479e-57 | -8.615850e-47 |
| Msa0225860 | Msa0272660 | 0.801504 | 8.729223e-49 | -8.615850e-47 |
| Msa0260670 | Msa0272660 | 0.804622 | 1.977612e-49 | -8.615850e-47 |
| Msa0261340 | Msa0272660 | 0.829827 | 4.140858e-55 | -8.615850e-47 |
| Msa0267110 | Msa0272660 | 0.819531 | 1.106282e-52 | -8.615850e-47 |
| Msa0272660 | Msa0277180 | 0.813459 | 2.532914e-51 | -8.615850e-47 |
| Msa0272660 | Msa0307770 | 0.807337 | 5.311345e-50 | -8.615850e-47 |
| Msa0272660 | Msa0313190 | 0.805633 | 1.214607e-49 | -8.615850e-47 |
| Msa0272660 | Msa0395860 | 0.820904 | 5.361472e-53 | -8.615850e-47 |
| Msa0272660 | Msa0397150 | 0.801006 | 1.103513e-48 | -8.615850e-47 |
| Msa0272660 | Msa0404190 | 0.803879 | 2.823569e-49 | -8.615850e-47 |
| Msa0272660 | Msa0415320 | 0.802197 | 6.289529e-49 | -8.615850e-47 |
| Msa0272660 | Msa0465410 | 0.804550 | 2.046828e-49 | -8.615850e-47 |
| Msa0272660 | Msa0511270 | 0.801419 | 9.087038e-49 | -8.615850e-47 |
| Msa0272660 | Msa0527860 | 0.806873 | 6.657718e-50 | -8.615850e-47 |
| Msa0272660 | Msa0535040 | 0.807750 | 4.340277e-50 | -8.615850e-47 |
| Msa0272660 | Msa0547900 | 0.817873 | 2.631286e-52 | -8.615850e-47 |
| Msa0272660 | Msa0548470 | 0.826389 | 2.787436e-54 | -8.615850e-47 |
| Msa0272660 | Msa0574890 | 0.803484 | 3.410444e-49 | -8.615850e-47 |
| Msa0272660 | Msa0582450 | 0.818893 | 1.545448e-52 | -8.615850e-47 |
| Msa0272660 | Msa0586190 | 0.819011 | 1.453077e-52 | -8.615850e-47 |
| Msa0272660 | Msa0602880 | 0.813971 | 1.953898e-51 | -8.615850e-47 |
| Msa0272660 | Msa0625190 | 0.807588 | 4.696389e-50 | -8.615850e-47 |
| Msa0272660 | Msa0643940 | 0.807705 | 4.436898e-50 | -8.615850e-47 |
| Msa0272660 | Msa0644410 | 0.807581 | 4.714630e-50 | -8.615850e-47 |
| Msa0272660 | Msa0664060 | 0.805423 | 1.344904e-49 | -8.615850e-47 |
| Msa0272660 | Msa0683570 | 0.828374 | 9.314265e-55 | -8.615850e-47 |
| Msa0272660 | Msa0683740 | 0.814543 | 1.460374e-51 | -8.615850e-47 |
| Msa0272660 | Msa0873730 | 0.810275 | 1.250043e-50 | -8.615850e-47 |
| Msa0272660 | Msa0883060 | 0.820249 | 7.578886e-53 | -8.615850e-47 |
| Msa0272660 | Msa0910430 | 0.803640 | 3.165096e-49 | -8.615850e-47 |
| Msa0272660 | Msa0945110 | 0.803668 | 3.123823e-49 | -8.615850e-47 |
| Msa0272660 | Msa0948290 | 0.832375 | 9.800574e-56 | -8.615850e-47 |
| Msa0272660 | Msa0967380 | 0.806961 | 6.377311e-50 | -8.615850e-47 |
| Msa0272660 | Msa1019430 | 0.801193 | 1.010427e-48 | -8.615850e-47 |
| Msa0272660 | Msa1019470 | 0.801325 | 9.496359e-49 | -8.615850e-47 |
| Msa0272660 | Msa1089940 | 0.807024 | 6.185452e-50 | -8.615850e-47 |
| Msa0272660 | Msa1097980 | 0.806417 | 8.310679e-50 | -8.615850e-47 |
| Msa0272660 | Msa1113340 | 0.804688 | 1.916051e-49 | -8.615850e-47 |
| Msa0272660 | Msa1175180 | 0.807392 | 5.169435e-50 | -8.615850e-47 |
| Msa0272660 | Msa1223470 | 0.808136 | 3.592211e-50 | -8.615850e-47 |
| Msa0272660 | Msa1224930 | 0.815154 | 1.068965e-51 | -8.615850e-47 |
| Msa0272660 | Msa1251930 | 0.824525 | 7.700241e-54 | -8.615850e-47 |
| Msa0272660 | Msa1269480 | 0.836097 | 1.142509e-56 | -8.615850e-47 |
| Msa0272660 | Msa1277150 | 0.805138 | 1.542880e-49 | -8.615850e-47 |
| Msa0272660 | Msa1369550 | 0.820257 | 7.547752e-53 | -8.615850e-47 |
| Msa0272660 | Msa1422420 | 0.840384 | 8.985155e-58 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0272660 | MtrunA17_Chr2g0282691 | 93.585 | 265 | 15 | 2 | 1 | 265 | 1 | 263 | 4.24e-109 | 315 |
| Msa0272660 | MtrunA17_Chr4g0046601 | 56.618 | 136 | 47 | 5 | 131 | 262 | 230 | 357 | 6.94e-22 | 93.2 |
| Msa0272660 | MtrunA17_Chr4g0046601 | 41.045 | 134 | 76 | 2 | 1 | 132 | 1 | 133 | 6.11e-18 | 82.4 |
| Msa0272660 | MtrunA17_Chr2g0324881 | 30.859 | 256 | 117 | 8 | 21 | 255 | 21 | 237 | 6.79e-14 | 69.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0272660 | AT2G33850.1 | 33.178 | 214 | 93 | 11 | 21 | 203 | 22 | 216 | 4.02e-11 | 62.4 |
Find 51 sgRNAs with CRISPR-Local
Find 120 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCTCTGGTTTGTTTGTAAC+TGG | 0.131657 | 2_3:+4201281 | None:intergenic |
| TGTAGTTGCCATGGTTATTC+TGG | 0.221088 | 2_3:+4200712 | None:intergenic |
| TTGTGTCCCTCAACTCATTT+TGG | 0.256754 | 2_3:+4201054 | None:intergenic |
| CAAAATAGCTATGGCTTATA+TGG | 0.260837 | 2_3:-4201233 | Msa0272660:CDS |
| TAGTACTTGTTATTGTTGTT+GGG | 0.319644 | 2_3:+4201131 | None:intergenic |
| GTAGTACTTGTTATTGTTGT+TGG | 0.324905 | 2_3:+4201130 | None:intergenic |
| TATTACAACAAAGACAGTTT+TGG | 0.329701 | 2_3:-4201083 | Msa0272660:CDS |
| AACTGGGGATTCTTCTTTGT+TGG | 0.334551 | 2_3:+4201298 | None:intergenic |
| ATGAAAGGTGGTTGCTCCTC+TGG | 0.339057 | 2_3:+4201266 | None:intergenic |
| ATTATAATGCTCAGAATAAC+AGG | 0.351179 | 2_3:-4200911 | Msa0272660:CDS |
| GGTGGATGCCGTGGCGGCGG+TGG | 0.353742 | 2_3:+4201187 | None:intergenic |
| ACTGGGGATTCTTCTTTGTT+GGG | 0.370013 | 2_3:+4201299 | None:intergenic |
| CCTCTGGTTTGTTTGTAACT+GGG | 0.383487 | 2_3:+4201282 | None:intergenic |
| TACAACAATAATAATAACTA+TGG | 0.387734 | 2_3:-4200750 | Msa0272660:CDS |
| GATGAATCACCATACATTGT+TGG | 0.414049 | 2_3:+4200801 | None:intergenic |
| TGTTTCTTCAAAGTTAGAAT+TGG | 0.416528 | 2_3:+4201163 | None:intergenic |
| GCTGAAGAATTCACTCTCTC+TGG | 0.421980 | 2_3:+4201355 | None:intergenic |
| GAGTGAACAACAATAATAAC+TGG | 0.430385 | 2_3:-4200773 | Msa0272660:CDS |
| TTCTTCAAAGTTAGAATTGG+TGG | 0.439756 | 2_3:+4201166 | None:intergenic |
| AAATACAATCCAACAATGTA+TGG | 0.452288 | 2_3:-4200810 | Msa0272660:CDS |
| TAAGAGGATGAAAGAAATGT+AGG | 0.456040 | 2_3:+4201409 | None:intergenic |
| GATGCCGTGGCGGCGGTGGA+AGG | 0.457928 | 2_3:+4201191 | None:intergenic |
| GGTGGTGGATGCCGTGGCGG+CGG | 0.460270 | 2_3:+4201184 | None:intergenic |
| CTCTGGTTTGTTTGTAACTG+GGG | 0.464914 | 2_3:+4201283 | None:intergenic |
| AATTATTATAATTATTGTTG+TGG | 0.469980 | 2_3:+4200931 | None:intergenic |
| TGTTGTTGAAGTAGTACTCT+TGG | 0.484835 | 2_3:+4200982 | None:intergenic |
| GCAACAAAAGAGTTGTTAAG+AGG | 0.489505 | 2_3:+4201393 | None:intergenic |
| AGGATGAAAGAAATGTAGGT+TGG | 0.497294 | 2_3:+4201413 | None:intergenic |
| GGATGAAAGAAATGTAGGTT+GGG | 0.498004 | 2_3:+4201414 | None:intergenic |
| TGTAACCATTGTAGTTGCCA+TGG | 0.515915 | 2_3:+4200703 | None:intergenic |
| AAATAACCAAAATGAGTTGA+GGG | 0.518734 | 2_3:-4201060 | Msa0272660:CDS |
| TTCAAAGTTAGAATTGGTGG+TGG | 0.520386 | 2_3:+4201169 | None:intergenic |
| AGTACTTGTTATTGTTGTTG+GGG | 0.535885 | 2_3:+4201132 | None:intergenic |
| GAAATAACCAAAATGAGTTG+AGG | 0.542156 | 2_3:-4201061 | Msa0272660:CDS |
| GACACAAAGTACAATGAAGA+AGG | 0.550520 | 2_3:-4201038 | Msa0272660:CDS |
| CCTCAGACACAAAATAGCTA+TGG | 0.562030 | 2_3:-4201242 | Msa0272660:CDS |
| CATTCCTTCCACCGCCGCCA+CGG | 0.564976 | 2_3:-4201195 | Msa0272660:CDS |
| AGAAGGTTACAACTCCATGA+TGG | 0.580265 | 2_3:-4201021 | Msa0272660:CDS |
| AGGTACAATGGTGAGAAACA+AGG | 0.586625 | 2_3:-4200891 | Msa0272660:CDS |
| ATGTATGGTGATTCATCTAG+AGG | 0.598645 | 2_3:-4200795 | Msa0272660:CDS |
| TGTGTCTGAGGAATGAAAGG+TGG | 0.603943 | 2_3:+4201254 | None:intergenic |
| AATAACCATGGCAACTACAA+TGG | 0.610902 | 2_3:-4200708 | Msa0272660:CDS |
| GCTCAGAATAACAGGTACAA+TGG | 0.619912 | 2_3:-4200903 | Msa0272660:CDS |
| AAGGAATGTGATCAGAGTCA+TGG | 0.626750 | 2_3:+4201210 | None:intergenic |
| AGAATTGGTGGTGGATGCCG+TGG | 0.633457 | 2_3:+4201178 | None:intergenic |
| ATTGGTGGTGGATGCCGTGG+CGG | 0.636866 | 2_3:+4201181 | None:intergenic |
| GGTACAATGGTGAGAAACAA+GGG | 0.647160 | 2_3:-4200890 | Msa0272660:CDS |
| AGAAATGTAGGTTGGGAATG+TGG | 0.649922 | 2_3:+4201421 | None:intergenic |
| TCTCTGGCTATAGTTTGTAG+AGG | 0.668021 | 2_3:+4201371 | None:intergenic |
| AATGAGTACCAGAATAACCA+TGG | 0.671041 | 2_3:-4200720 | Msa0272660:CDS |
| CCCAGTTACAAACAAACCAG+AGG | 0.679700 | 2_3:-4201282 | Msa0272660:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTATTATAATTATTGTTG+TGG | + | chr2_3:4201147-4201166 | None:intergenic | 10.0% |
| !! | AATTATTATAATTATTGTTG+TGG | + | chr2_3:4201147-4201166 | None:intergenic | 10.0% |
| !! | TACAACAATAATAATAACTA+TGG | - | chr2_3:4201325-4201344 | Msa0272660:CDS | 15.0% |
| !! | TACAACAATAATAATAACTA+TGG | - | chr2_3:4201325-4201344 | Msa0272660:CDS | 15.0% |
| ! | TGTTTCTTCAAAGTTAGAAT+TGG | + | chr2_3:4200915-4200934 | None:intergenic | 25.0% |
| !!! | TAGTACTTGTTATTGTTGTT+GGG | + | chr2_3:4200947-4200966 | None:intergenic | 25.0% |
| !! | TATTACAACAAAGACAGTTT+TGG | - | chr2_3:4200992-4201011 | Msa0272660:CDS | 25.0% |
| !! | AAATAACCAAAATGAGTTGA+GGG | - | chr2_3:4201015-4201034 | Msa0272660:CDS | 25.0% |
| ! | ATTATAATGCTCAGAATAAC+AGG | - | chr2_3:4201164-4201183 | Msa0272660:CDS | 25.0% |
| ! | AAATACAATCCAACAATGTA+TGG | - | chr2_3:4201265-4201284 | Msa0272660:CDS | 25.0% |
| ! | TGTTTCTTCAAAGTTAGAAT+TGG | + | chr2_3:4200915-4200934 | None:intergenic | 25.0% |
| !!! | TAGTACTTGTTATTGTTGTT+GGG | + | chr2_3:4200947-4200966 | None:intergenic | 25.0% |
| !! | TATTACAACAAAGACAGTTT+TGG | - | chr2_3:4200992-4201011 | Msa0272660:CDS | 25.0% |
| !! | AAATAACCAAAATGAGTTGA+GGG | - | chr2_3:4201015-4201034 | Msa0272660:CDS | 25.0% |
| ! | ATTATAATGCTCAGAATAAC+AGG | - | chr2_3:4201164-4201183 | Msa0272660:CDS | 25.0% |
| ! | AAATACAATCCAACAATGTA+TGG | - | chr2_3:4201265-4201284 | Msa0272660:CDS | 25.0% |
| TAAGAGGATGAAAGAAATGT+AGG | + | chr2_3:4200669-4200688 | None:intergenic | 30.0% | |
| CAAAATAGCTATGGCTTATA+TGG | - | chr2_3:4200842-4200861 | Msa0272660:CDS | 30.0% | |
| TTCTTCAAAGTTAGAATTGG+TGG | + | chr2_3:4200912-4200931 | None:intergenic | 30.0% | |
| !! | AGTACTTGTTATTGTTGTTG+GGG | + | chr2_3:4200946-4200965 | None:intergenic | 30.0% |
| !! | GTAGTACTTGTTATTGTTGT+TGG | + | chr2_3:4200948-4200967 | None:intergenic | 30.0% |
| GAAATAACCAAAATGAGTTG+AGG | - | chr2_3:4201014-4201033 | Msa0272660:CDS | 30.0% | |
| !!! | GTTGTTTTGTTTTTCCATCA+TGG | + | chr2_3:4201071-4201090 | None:intergenic | 30.0% |
| GAGTGAACAACAATAATAAC+TGG | - | chr2_3:4201302-4201321 | Msa0272660:CDS | 30.0% | |
| TAAGAGGATGAAAGAAATGT+AGG | + | chr2_3:4200669-4200688 | None:intergenic | 30.0% | |
| CAAAATAGCTATGGCTTATA+TGG | - | chr2_3:4200842-4200861 | Msa0272660:CDS | 30.0% | |
| TTCTTCAAAGTTAGAATTGG+TGG | + | chr2_3:4200912-4200931 | None:intergenic | 30.0% | |
| !! | AGTACTTGTTATTGTTGTTG+GGG | + | chr2_3:4200946-4200965 | None:intergenic | 30.0% |
| !! | GTAGTACTTGTTATTGTTGT+TGG | + | chr2_3:4200948-4200967 | None:intergenic | 30.0% |
| GAAATAACCAAAATGAGTTG+AGG | - | chr2_3:4201014-4201033 | Msa0272660:CDS | 30.0% | |
| !!! | GTTGTTTTGTTTTTCCATCA+TGG | + | chr2_3:4201071-4201090 | None:intergenic | 30.0% |
| GAGTGAACAACAATAATAAC+TGG | - | chr2_3:4201302-4201321 | Msa0272660:CDS | 30.0% | |
| GGATGAAAGAAATGTAGGTT+GGG | + | chr2_3:4200664-4200683 | None:intergenic | 35.0% | |
| AGGATGAAAGAAATGTAGGT+TGG | + | chr2_3:4200665-4200684 | None:intergenic | 35.0% | |
| GCAACAAAAGAGTTGTTAAG+AGG | + | chr2_3:4200685-4200704 | None:intergenic | 35.0% | |
| ! | TTTTGTGTCTGAGGAATGAA+AGG | + | chr2_3:4200827-4200846 | None:intergenic | 35.0% |
| TTCAAAGTTAGAATTGGTGG+TGG | + | chr2_3:4200909-4200928 | None:intergenic | 35.0% | |
| GACACAAAGTACAATGAAGA+AGG | - | chr2_3:4201037-4201056 | Msa0272660:CDS | 35.0% | |
| TGTTGTTGAAGTAGTACTCT+TGG | + | chr2_3:4201096-4201115 | None:intergenic | 35.0% | |
| ! | GATGAGTGACACAAGATTTT+TGG | - | chr2_3:4201207-4201226 | Msa0272660:CDS | 35.0% |
| !! | AGTGACACAAGATTTTTGGA+AGG | - | chr2_3:4201211-4201230 | Msa0272660:CDS | 35.0% |
| GATGAATCACCATACATTGT+TGG | + | chr2_3:4201277-4201296 | None:intergenic | 35.0% | |
| ATGTATGGTGATTCATCTAG+AGG | - | chr2_3:4201280-4201299 | Msa0272660:CDS | 35.0% | |
| AATGAGTACCAGAATAACCA+TGG | - | chr2_3:4201355-4201374 | Msa0272660:CDS | 35.0% | |
| AATAACCATGGCAACTACAA+TGG | - | chr2_3:4201367-4201386 | Msa0272660:CDS | 35.0% | |
| CAATGGTTACAAAAACCAAG+AGG | - | chr2_3:4201384-4201403 | Msa0272660:CDS | 35.0% | |
| TTACAAAAACCAAGAGGAGT+TGG | - | chr2_3:4201390-4201409 | Msa0272660:CDS | 35.0% | |
| GGATGAAAGAAATGTAGGTT+GGG | + | chr2_3:4200664-4200683 | None:intergenic | 35.0% | |
| AGGATGAAAGAAATGTAGGT+TGG | + | chr2_3:4200665-4200684 | None:intergenic | 35.0% | |
| GCAACAAAAGAGTTGTTAAG+AGG | + | chr2_3:4200685-4200704 | None:intergenic | 35.0% | |
| ! | TTTTGTGTCTGAGGAATGAA+AGG | + | chr2_3:4200827-4200846 | None:intergenic | 35.0% |
| TTCAAAGTTAGAATTGGTGG+TGG | + | chr2_3:4200909-4200928 | None:intergenic | 35.0% | |
| GACACAAAGTACAATGAAGA+AGG | - | chr2_3:4201037-4201056 | Msa0272660:CDS | 35.0% | |
| TGTTGTTGAAGTAGTACTCT+TGG | + | chr2_3:4201096-4201115 | None:intergenic | 35.0% | |
| ! | GATGAGTGACACAAGATTTT+TGG | - | chr2_3:4201207-4201226 | Msa0272660:CDS | 35.0% |
| !! | AGTGACACAAGATTTTTGGA+AGG | - | chr2_3:4201211-4201230 | Msa0272660:CDS | 35.0% |
| GATGAATCACCATACATTGT+TGG | + | chr2_3:4201277-4201296 | None:intergenic | 35.0% | |
| ATGTATGGTGATTCATCTAG+AGG | - | chr2_3:4201280-4201299 | Msa0272660:CDS | 35.0% | |
| AATGAGTACCAGAATAACCA+TGG | - | chr2_3:4201355-4201374 | Msa0272660:CDS | 35.0% | |
| AATAACCATGGCAACTACAA+TGG | - | chr2_3:4201367-4201386 | Msa0272660:CDS | 35.0% | |
| CAATGGTTACAAAAACCAAG+AGG | - | chr2_3:4201384-4201403 | Msa0272660:CDS | 35.0% | |
| TTACAAAAACCAAGAGGAGT+TGG | - | chr2_3:4201390-4201409 | Msa0272660:CDS | 35.0% | |
| ! | AGAAATGTAGGTTGGGAATG+TGG | + | chr2_3:4200657-4200676 | None:intergenic | 40.0% |
| ! | TCTCTGGCTATAGTTTGTAG+AGG | + | chr2_3:4200707-4200726 | None:intergenic | 40.0% |
| ACTGGGGATTCTTCTTTGTT+GGG | + | chr2_3:4200779-4200798 | None:intergenic | 40.0% | |
| AACTGGGGATTCTTCTTTGT+TGG | + | chr2_3:4200780-4200799 | None:intergenic | 40.0% | |
| !! | CTCTGGTTTGTTTGTAACTG+GGG | + | chr2_3:4200795-4200814 | None:intergenic | 40.0% |
| !! | CCTCTGGTTTGTTTGTAACT+GGG | + | chr2_3:4200796-4200815 | None:intergenic | 40.0% |
| !! | TCCTCTGGTTTGTTTGTAAC+TGG | + | chr2_3:4200797-4200816 | None:intergenic | 40.0% |
| !! | CCATAGCTATTTTGTGTCTG+AGG | + | chr2_3:4200836-4200855 | None:intergenic | 40.0% |
| CCTCAGACACAAAATAGCTA+TGG | - | chr2_3:4200833-4200852 | Msa0272660:CDS | 40.0% | |
| AAGGAATGTGATCAGAGTCA+TGG | + | chr2_3:4200868-4200887 | None:intergenic | 40.0% | |
| ! | TTGTGTCCCTCAACTCATTT+TGG | + | chr2_3:4201024-4201043 | None:intergenic | 40.0% |
| AGAAGGTTACAACTCCATGA+TGG | - | chr2_3:4201054-4201073 | Msa0272660:CDS | 40.0% | |
| GCTCAGAATAACAGGTACAA+TGG | - | chr2_3:4201172-4201191 | Msa0272660:CDS | 40.0% | |
| AGGTACAATGGTGAGAAACA+AGG | - | chr2_3:4201184-4201203 | Msa0272660:CDS | 40.0% | |
| GGTACAATGGTGAGAAACAA+GGG | - | chr2_3:4201185-4201204 | Msa0272660:CDS | 40.0% | |
| !! | GACACAAGATTTTTGGAAGG+TGG | - | chr2_3:4201214-4201233 | Msa0272660:CDS | 40.0% |
| TGTAGTTGCCATGGTTATTC+TGG | + | chr2_3:4201366-4201385 | None:intergenic | 40.0% | |
| TGTAACCATTGTAGTTGCCA+TGG | + | chr2_3:4201375-4201394 | None:intergenic | 40.0% | |
| ! | GTTCATTTTCCAACTCCTCT+TGG | + | chr2_3:4201402-4201421 | None:intergenic | 40.0% |
| ! | AGAAATGTAGGTTGGGAATG+TGG | + | chr2_3:4200657-4200676 | None:intergenic | 40.0% |
| ! | TCTCTGGCTATAGTTTGTAG+AGG | + | chr2_3:4200707-4200726 | None:intergenic | 40.0% |
| ACTGGGGATTCTTCTTTGTT+GGG | + | chr2_3:4200779-4200798 | None:intergenic | 40.0% | |
| AACTGGGGATTCTTCTTTGT+TGG | + | chr2_3:4200780-4200799 | None:intergenic | 40.0% | |
| !! | CTCTGGTTTGTTTGTAACTG+GGG | + | chr2_3:4200795-4200814 | None:intergenic | 40.0% |
| !! | CCTCTGGTTTGTTTGTAACT+GGG | + | chr2_3:4200796-4200815 | None:intergenic | 40.0% |
| !! | TCCTCTGGTTTGTTTGTAAC+TGG | + | chr2_3:4200797-4200816 | None:intergenic | 40.0% |
| !! | CCATAGCTATTTTGTGTCTG+AGG | + | chr2_3:4200836-4200855 | None:intergenic | 40.0% |
| CCTCAGACACAAAATAGCTA+TGG | - | chr2_3:4200833-4200852 | Msa0272660:CDS | 40.0% | |
| AAGGAATGTGATCAGAGTCA+TGG | + | chr2_3:4200868-4200887 | None:intergenic | 40.0% | |
| ! | TTGTGTCCCTCAACTCATTT+TGG | + | chr2_3:4201024-4201043 | None:intergenic | 40.0% |
| AGAAGGTTACAACTCCATGA+TGG | - | chr2_3:4201054-4201073 | Msa0272660:CDS | 40.0% | |
| GCTCAGAATAACAGGTACAA+TGG | - | chr2_3:4201172-4201191 | Msa0272660:CDS | 40.0% | |
| AGGTACAATGGTGAGAAACA+AGG | - | chr2_3:4201184-4201203 | Msa0272660:CDS | 40.0% | |
| GGTACAATGGTGAGAAACAA+GGG | - | chr2_3:4201185-4201204 | Msa0272660:CDS | 40.0% | |
| !! | GACACAAGATTTTTGGAAGG+TGG | - | chr2_3:4201214-4201233 | Msa0272660:CDS | 40.0% |
| TGTAGTTGCCATGGTTATTC+TGG | + | chr2_3:4201366-4201385 | None:intergenic | 40.0% | |
| TGTAACCATTGTAGTTGCCA+TGG | + | chr2_3:4201375-4201394 | None:intergenic | 40.0% | |
| ! | GTTCATTTTCCAACTCCTCT+TGG | + | chr2_3:4201402-4201421 | None:intergenic | 40.0% |
| GCTGAAGAATTCACTCTCTC+TGG | + | chr2_3:4200723-4200742 | None:intergenic | 45.0% | |
| CCCAGTTACAAACAAACCAG+AGG | - | chr2_3:4200793-4200812 | Msa0272660:CDS | 45.0% | |
| TGTGTCTGAGGAATGAAAGG+TGG | + | chr2_3:4200824-4200843 | None:intergenic | 45.0% | |
| GCTGAAGAATTCACTCTCTC+TGG | + | chr2_3:4200723-4200742 | None:intergenic | 45.0% | |
| CCCAGTTACAAACAAACCAG+AGG | - | chr2_3:4200793-4200812 | Msa0272660:CDS | 45.0% | |
| TGTGTCTGAGGAATGAAAGG+TGG | + | chr2_3:4200824-4200843 | None:intergenic | 45.0% | |
| ATGAAAGGTGGTTGCTCCTC+TGG | + | chr2_3:4200812-4200831 | None:intergenic | 50.0% | |
| ATGAAAGGTGGTTGCTCCTC+TGG | + | chr2_3:4200812-4200831 | None:intergenic | 50.0% | |
| !! | AGAATTGGTGGTGGATGCCG+TGG | + | chr2_3:4200900-4200919 | None:intergenic | 55.0% |
| !! | AGAATTGGTGGTGGATGCCG+TGG | + | chr2_3:4200900-4200919 | None:intergenic | 55.0% |
| !! | ATTGGTGGTGGATGCCGTGG+CGG | + | chr2_3:4200897-4200916 | None:intergenic | 60.0% |
| !! | ATTGGTGGTGGATGCCGTGG+CGG | + | chr2_3:4200897-4200916 | None:intergenic | 60.0% |
| CATTCCTTCCACCGCCGCCA+CGG | - | chr2_3:4200880-4200899 | Msa0272660:CDS | 65.0% | |
| CATTCCTTCCACCGCCGCCA+CGG | - | chr2_3:4200880-4200899 | Msa0272660:CDS | 65.0% | |
| GATGCCGTGGCGGCGGTGGA+AGG | + | chr2_3:4200887-4200906 | None:intergenic | 75.0% | |
| !! | GGTGGTGGATGCCGTGGCGG+CGG | + | chr2_3:4200894-4200913 | None:intergenic | 75.0% |
| GATGCCGTGGCGGCGGTGGA+AGG | + | chr2_3:4200887-4200906 | None:intergenic | 75.0% | |
| !! | GGTGGTGGATGCCGTGGCGG+CGG | + | chr2_3:4200894-4200913 | None:intergenic | 75.0% |
| ! | GGTGGATGCCGTGGCGGCGG+TGG | + | chr2_3:4200891-4200910 | None:intergenic | 80.0% |
| ! | GGTGGATGCCGTGGCGGCGG+TGG | + | chr2_3:4200891-4200910 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_3 | gene | 4200650 | 4201447 | 4200650 | ID=Msa0272660;Name=Msa0272660 |
| chr2_3 | mRNA | 4200650 | 4201447 | 4200650 | ID=Msa0272660-mRNA-1;Parent=Msa0272660;Name=Msa0272660-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|265 |
| chr2_3 | exon | 4200650 | 4201447 | 4200650 | ID=Msa0272660-mRNA-1:exon:2104;Parent=Msa0272660-mRNA-1 |
| chr2_3 | CDS | 4200650 | 4201447 | 4200650 | ID=Msa0272660-mRNA-1:cds;Parent=Msa0272660-mRNA-1 |
| Gene Sequence |
| Protein sequence |
