Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1427200 | XP_003597357.1 | 96.875 | 384 | 11 | 1 | 1 | 384 | 1 | 383 | 0.0 | 763 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1427200 | sp|Q0WQX7|RBL1_ARATH | 62.434 | 378 | 139 | 2 | 6 | 383 | 15 | 389 | 1.23e-174 | 494 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1427200 | G7IHP5 | 96.875 | 384 | 11 | 1 | 1 | 384 | 1 | 383 | 0.0 | 763 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001940 | Msa1427200 | 0.815878 | 7.377308e-52 | -8.615850e-47 |
| Msa0001960 | Msa1427200 | 0.816883 | 4.394812e-52 | -8.615850e-47 |
| Msa0005890 | Msa1427200 | 0.824616 | 7.327902e-54 | -8.615850e-47 |
| Msa0017950 | Msa1427200 | 0.811231 | 7.765695e-51 | -8.615850e-47 |
| Msa0030370 | Msa1427200 | 0.804234 | 2.381919e-49 | -8.615850e-47 |
| Msa0049790 | Msa1427200 | 0.814752 | 1.312578e-51 | -8.615850e-47 |
| Msa0075450 | Msa1427200 | 0.802254 | 6.121351e-49 | -8.615850e-47 |
| Msa0081520 | Msa1427200 | 0.807813 | 4.208846e-50 | -8.615850e-47 |
| Msa0081570 | Msa1427200 | 0.813770 | 2.163678e-51 | -8.615850e-47 |
| Msa0094780 | Msa1427200 | 0.836549 | 8.767917e-57 | -8.615850e-47 |
| Msa0106620 | Msa1427200 | 0.800633 | 1.315186e-48 | -8.615850e-47 |
| Msa1348090 | Msa1427200 | 0.828324 | 9.580478e-55 | -8.615850e-47 |
| Msa1356830 | Msa1427200 | 0.803112 | 4.073063e-49 | -8.615850e-47 |
| Msa1392580 | Msa1427200 | 0.827619 | 1.415792e-54 | -8.615850e-47 |
| Msa1397400 | Msa1427200 | 0.834091 | 3.662879e-56 | -8.615850e-47 |
| Msa1402400 | Msa1427200 | 0.804142 | 2.489312e-49 | -8.615850e-47 |
| Msa1420950 | Msa1427200 | 0.837891 | 3.977351e-57 | -8.615850e-47 |
| Msa1422420 | Msa1427200 | 0.810931 | 9.016340e-51 | -8.615850e-47 |
| Msa1427200 | Msa1437640 | 0.818119 | 2.315072e-52 | -8.615850e-47 |
| Msa1427200 | Msa1440880 | 0.808898 | 2.469811e-50 | -8.615850e-47 |
| Msa1427200 | Msa1440960 | 0.842473 | 2.530866e-58 | -8.615850e-47 |
| Msa0624900 | Msa1427200 | 0.823593 | 1.274214e-53 | -8.615850e-47 |
| Msa0626450 | Msa1427200 | 0.840213 | 9.955176e-58 | -8.615850e-47 |
| Msa0626490 | Msa1427200 | 0.838921 | 2.157584e-57 | -8.615850e-47 |
| Msa0638480 | Msa1427200 | 0.800274 | 1.556066e-48 | -8.615850e-47 |
| Msa0644410 | Msa1427200 | 0.811485 | 6.837704e-51 | -8.615850e-47 |
| Msa0658640 | Msa1427200 | 0.801757 | 7.745746e-49 | -8.615850e-47 |
| Msa0664090 | Msa1427200 | 0.831952 | 1.246904e-55 | -8.615850e-47 |
| Msa0664150 | Msa1427200 | 0.803812 | 2.915815e-49 | -8.615850e-47 |
| Msa0664600 | Msa1427200 | 0.843057 | 1.770856e-58 | -8.615850e-47 |
| Msa0670100 | Msa1427200 | 0.816698 | 4.835287e-52 | -8.615850e-47 |
| Msa0683570 | Msa1427200 | 0.803927 | 2.759785e-49 | -8.615850e-47 |
| Msa0721080 | Msa1427200 | 0.807959 | 3.916713e-50 | -8.615850e-47 |
| Msa0733390 | Msa1427200 | 0.806949 | 6.416495e-50 | -8.615850e-47 |
| Msa0735780 | Msa1427200 | 0.805812 | 1.114304e-49 | -8.615850e-47 |
| Msa0741220 | Msa1427200 | 0.819171 | 1.336220e-52 | -8.615850e-47 |
| Msa0783530 | Msa1427200 | 0.806755 | 7.051214e-50 | -8.615850e-47 |
| Msa0795870 | Msa1427200 | 0.839683 | 1.368644e-57 | -8.615850e-47 |
| Msa0833650 | Msa1427200 | 0.838150 | 3.411190e-57 | -8.615850e-47 |
| Msa0136650 | Msa1427200 | 0.809188 | 2.141053e-50 | -8.615850e-47 |
| Msa0140280 | Msa1427200 | 0.809285 | 2.040260e-50 | -8.615850e-47 |
| Msa0144360 | Msa1427200 | 0.809090 | 2.246393e-50 | -8.615850e-47 |
| Msa0173730 | Msa1427200 | 0.810638 | 1.043265e-50 | -8.615850e-47 |
| Msa0174450 | Msa1427200 | 0.813735 | 2.201932e-51 | -8.615850e-47 |
| Msa0182240 | Msa1427200 | 0.805193 | 1.502359e-49 | -8.615850e-47 |
| Msa0190570 | Msa1427200 | 0.812244 | 4.673208e-51 | -8.615850e-47 |
| Msa0192540 | Msa1427200 | 0.800826 | 1.201384e-48 | -8.615850e-47 |
| Msa0223210 | Msa1427200 | 0.985621 | 3.861659e-164 | -8.615850e-47 |
| Msa0225100 | Msa1427200 | 0.826679 | 2.377058e-54 | -8.615850e-47 |
| Msa0225460 | Msa1427200 | 0.842409 | 2.632503e-58 | -8.615850e-47 |
| Msa0225680 | Msa1427200 | 0.847298 | 1.263391e-59 | -8.615850e-47 |
| Msa0225860 | Msa1427200 | 0.853070 | 3.046571e-61 | -8.615850e-47 |
| Msa1236410 | Msa1427200 | 0.807044 | 6.125035e-50 | -8.615850e-47 |
| Msa1251930 | Msa1427200 | 0.818278 | 2.130755e-52 | -8.615850e-47 |
| Msa1257300 | Msa1427200 | 0.801182 | 1.015857e-48 | -8.615850e-47 |
| Msa1267770 | Msa1427200 | 0.805344 | 1.396801e-49 | -8.615850e-47 |
| Msa1267900 | Msa1427200 | 0.812383 | 4.358225e-51 | -8.615850e-47 |
| Msa1269480 | Msa1427200 | 0.813672 | 2.273643e-51 | -8.615850e-47 |
| Msa1277150 | Msa1427200 | 0.808365 | 3.210690e-50 | -8.615850e-47 |
| Msa1298370 | Msa1427200 | 0.829027 | 6.477191e-55 | -8.615850e-47 |
| Msa1298810 | Msa1427200 | 0.803145 | 4.007716e-49 | -8.615850e-47 |
| Msa1307630 | Msa1427200 | 0.814751 | 1.313205e-51 | -8.615850e-47 |
| Msa1320670 | Msa1427200 | 0.827773 | 1.300325e-54 | -8.615850e-47 |
| Msa1328640 | Msa1427200 | 0.800636 | 1.313235e-48 | -8.615850e-47 |
| Msa1328710 | Msa1427200 | 0.800372 | 1.486602e-48 | -8.615850e-47 |
| Msa1330420 | Msa1427200 | 0.812892 | 3.373213e-51 | -8.615850e-47 |
| Msa0369790 | Msa1427200 | 0.808604 | 2.854589e-50 | -8.615850e-47 |
| Msa0378720 | Msa1427200 | 0.806436 | 8.234002e-50 | -8.615850e-47 |
| Msa0380620 | Msa1427200 | 0.812230 | 4.707228e-51 | -8.615850e-47 |
| Msa0380670 | Msa1427200 | 0.802353 | 5.842157e-49 | -8.615850e-47 |
| Msa0428370 | Msa1427200 | 0.803299 | 3.724373e-49 | -8.615850e-47 |
| Msa0430260 | Msa1427200 | 0.811333 | 7.379055e-51 | -8.615850e-47 |
| Msa0430300 | Msa1427200 | 0.815649 | 8.297047e-52 | -8.615850e-47 |
| Msa0448340 | Msa1427200 | 0.801261 | 9.788657e-49 | -8.615850e-47 |
| Msa0464000 | Msa1427200 | 0.804804 | 1.811471e-49 | -8.615850e-47 |
| Msa0474730 | Msa1427200 | 0.804075 | 2.570580e-49 | -8.615850e-47 |
| Msa0475790 | Msa1427200 | 0.811028 | 8.592759e-51 | -8.615850e-47 |
| Msa0476650 | Msa1427200 | 0.800186 | 1.622257e-48 | -8.615850e-47 |
| Msa1019000 | Msa1427200 | 0.811166 | 8.020628e-51 | -8.615850e-47 |
| Msa1019150 | Msa1427200 | 0.802564 | 5.284296e-49 | -8.615850e-47 |
| Msa1019430 | Msa1427200 | 0.820116 | 8.130503e-53 | -8.615850e-47 |
| Msa1019470 | Msa1427200 | 0.822826 | 1.924759e-53 | -8.615850e-47 |
| Msa1020510 | Msa1427200 | 0.803130 | 4.038305e-49 | -8.615850e-47 |
| Msa1021210 | Msa1427200 | 0.818940 | 1.507902e-52 | -8.615850e-47 |
| Msa1027990 | Msa1427200 | 0.808721 | 2.694487e-50 | -8.615850e-47 |
| Msa1028280 | Msa1427200 | 0.812280 | 4.589096e-51 | -8.615850e-47 |
| Msa1041670 | Msa1427200 | 0.809551 | 1.789686e-50 | -8.615850e-47 |
| Msa1044470 | Msa1427200 | 0.826229 | 3.042413e-54 | -8.615850e-47 |
| Msa1059960 | Msa1427200 | 0.803617 | 3.200591e-49 | -8.615850e-47 |
| Msa1085330 | Msa1427200 | 0.807439 | 5.052445e-50 | -8.615850e-47 |
| Msa0242590 | Msa1427200 | 0.808536 | 2.952087e-50 | -8.615850e-47 |
| Msa0260510 | Msa1427200 | 0.826824 | 2.194336e-54 | -8.615850e-47 |
| Msa0264400 | Msa1427200 | 0.940101 | 4.142369e-100 | -8.615850e-47 |
| Msa0265850 | Msa1427200 | 0.801962 | 7.027845e-49 | -8.615850e-47 |
| Msa0266180 | Msa1427200 | 0.813352 | 2.672891e-51 | -8.615850e-47 |
| Msa0267110 | Msa1427200 | 0.817715 | 2.856393e-52 | -8.615850e-47 |
| Msa0271880 | Msa1427200 | 0.819099 | 1.387685e-52 | -8.615850e-47 |
| Msa0277180 | Msa1427200 | 0.809434 | 1.896216e-50 | -8.615850e-47 |
| Msa0287740 | Msa1427200 | 0.812007 | 5.263768e-51 | -8.615850e-47 |
| Msa0298470 | Msa1427200 | 0.834358 | 3.139398e-56 | -8.615850e-47 |
| Msa0300270 | Msa1427200 | 0.806073 | 9.818105e-50 | -8.615850e-47 |
| Msa0300320 | Msa1427200 | 0.804671 | 1.931812e-49 | -8.615850e-47 |
| Msa0300690 | Msa1427200 | 0.803265 | 3.786112e-49 | -8.615850e-47 |
| Msa0302290 | Msa1427200 | 0.891687 | 3.164980e-74 | -8.615850e-47 |
| Msa0310850 | Msa1427200 | 0.827449 | 1.554834e-54 | -8.615850e-47 |
| Msa0330380 | Msa1427200 | 0.823311 | 1.482889e-53 | -8.615850e-47 |
| Msa0337700 | Msa1427200 | 0.817075 | 3.979217e-52 | -8.615850e-47 |
| Msa0339650 | Msa1427200 | 0.969126 | 1.148327e-129 | -8.615850e-47 |
| Msa0341540 | Msa1427200 | 0.804675 | 1.927815e-49 | -8.615850e-47 |
| Msa0363400 | Msa1427200 | 0.802503 | 5.439730e-49 | -8.615850e-47 |
| Msa1112380 | Msa1427200 | 0.803251 | 3.811413e-49 | -8.615850e-47 |
| Msa1113340 | Msa1427200 | 0.803619 | 3.197693e-49 | -8.615850e-47 |
| Msa1132840 | Msa1427200 | 0.829170 | 5.978749e-55 | -8.615850e-47 |
| Msa1145810 | Msa1427200 | 0.801002 | 1.105970e-48 | -8.615850e-47 |
| Msa1147740 | Msa1427200 | 0.809784 | 1.594563e-50 | -8.615850e-47 |
| Msa1166560 | Msa1427200 | 0.806638 | 7.465941e-50 | -8.615850e-47 |
| Msa1186020 | Msa1427200 | 0.816776 | 4.644233e-52 | -8.615850e-47 |
| Msa1192570 | Msa1427200 | 0.825261 | 5.161075e-54 | -8.615850e-47 |
| Msa1198250 | Msa1427200 | 0.826564 | 2.530935e-54 | -8.615850e-47 |
| Msa1199570 | Msa1427200 | 0.803273 | 3.771422e-49 | -8.615850e-47 |
| Msa1200890 | Msa1427200 | 0.816641 | 4.979177e-52 | -8.615850e-47 |
| Msa1208160 | Msa1427200 | 0.806517 | 7.914621e-50 | -8.615850e-47 |
| Msa1208430 | Msa1427200 | 0.814572 | 1.438852e-51 | -8.615850e-47 |
| Msa1208950 | Msa1427200 | 0.829208 | 5.854689e-55 | -8.615850e-47 |
| Msa1215870 | Msa1427200 | 0.809546 | 1.793676e-50 | -8.615850e-47 |
| Msa0483100 | Msa1427200 | 0.822022 | 2.958974e-53 | -8.615850e-47 |
| Msa0484380 | Msa1427200 | 0.821596 | 3.712368e-53 | -8.615850e-47 |
| Msa0509550 | Msa1427200 | 0.801938 | 7.109287e-49 | -8.615850e-47 |
| Msa0527820 | Msa1427200 | 0.801330 | 9.475862e-49 | -8.615850e-47 |
| Msa0534400 | Msa1427200 | 0.805501 | 1.294994e-49 | -8.615850e-47 |
| Msa0548470 | Msa1427200 | 0.809559 | 1.782248e-50 | -8.615850e-47 |
| Msa0567170 | Msa1427200 | 0.807686 | 4.477448e-50 | -8.615850e-47 |
| Msa0571290 | Msa1427200 | 0.834450 | 2.976053e-56 | -8.615850e-47 |
| Msa0574890 | Msa1427200 | 0.801300 | 9.608559e-49 | -8.615850e-47 |
| Msa0580370 | Msa1427200 | 0.828936 | 6.811629e-55 | -8.615850e-47 |
| Msa0581470 | Msa1427200 | 0.817932 | 2.551957e-52 | -8.615850e-47 |
| Msa0582480 | Msa1427200 | 0.810010 | 1.425642e-50 | -8.615850e-47 |
| Msa0586220 | Msa1427200 | 0.827054 | 1.933068e-54 | -8.615850e-47 |
| Msa0597790 | Msa1427200 | 0.804848 | 1.774078e-49 | -8.615850e-47 |
| Msa0600930 | Msa1427200 | 0.817668 | 2.926459e-52 | -8.615850e-47 |
| Msa0861510 | Msa1427200 | 0.813800 | 2.130407e-51 | -8.615850e-47 |
| Msa0861530 | Msa1427200 | 0.812136 | 4.933898e-51 | -8.615850e-47 |
| Msa0861600 | Msa1427200 | 0.818068 | 2.376873e-52 | -8.615850e-47 |
| Msa0868440 | Msa1427200 | 0.807079 | 6.021011e-50 | -8.615850e-47 |
| Msa0903070 | Msa1427200 | 0.833834 | 4.247586e-56 | -8.615850e-47 |
| Msa0935470 | Msa1427200 | 0.814154 | 1.779696e-51 | -8.615850e-47 |
| Msa0945110 | Msa1427200 | 0.800519 | 1.387352e-48 | -8.615850e-47 |
| Msa0967380 | Msa1427200 | 0.813509 | 2.468958e-51 | -8.615850e-47 |
| Msa0967870 | Msa1427200 | 0.811777 | 5.909443e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1427200 | MtrunA17_Chr2g0328271 | 96.875 | 384 | 11 | 1 | 1 | 384 | 1 | 383 | 0.0 | 763 |
| Msa1427200 | MtrunA17_Chr4g0009841 | 62.824 | 347 | 126 | 2 | 37 | 383 | 34 | 377 | 1.18e-168 | 476 |
| Msa1427200 | MtrunA17_Chr7g0238701 | 59.178 | 365 | 140 | 4 | 23 | 383 | 4 | 363 | 2.51e-150 | 429 |
| Msa1427200 | MtrunA17_Chr6g0472501 | 59.412 | 340 | 122 | 3 | 1 | 338 | 1 | 326 | 2.14e-127 | 369 |
| Msa1427200 | MtrunA17_Chr1g0203681 | 53.191 | 329 | 135 | 3 | 16 | 339 | 5 | 319 | 2.59e-113 | 333 |
| Msa1427200 | MtrunA17_Chr2g0332941 | 55.636 | 275 | 114 | 3 | 44 | 312 | 30 | 302 | 5.47e-99 | 296 |
| Msa1427200 | MtrunA17_Chr3g0115331 | 39.257 | 377 | 216 | 5 | 13 | 382 | 9 | 379 | 2.35e-87 | 269 |
| Msa1427200 | MtrunA17_Chr2g0322601 | 39.500 | 200 | 94 | 5 | 142 | 340 | 1 | 174 | 1.15e-32 | 120 |
| Msa1427200 | MtrunA17_Chr2g0322611 | 48.913 | 92 | 47 | 0 | 99 | 190 | 2 | 93 | 3.72e-23 | 92.8 |
| Msa1427200 | MtrunA17_Chr8g0392201 | 38.542 | 96 | 43 | 2 | 225 | 320 | 28 | 107 | 1.36e-11 | 60.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1427200 | AT2G29050.1 | 62.434 | 378 | 139 | 2 | 6 | 383 | 15 | 389 | 1.25e-175 | 494 |
| Msa1427200 | AT3G53780.2 | 61.318 | 349 | 127 | 2 | 35 | 383 | 54 | 394 | 1.10e-153 | 439 |
| Msa1427200 | AT1G63120.1 | 63.946 | 294 | 98 | 2 | 44 | 335 | 30 | 317 | 1.09e-128 | 372 |
| Msa1427200 | AT2G29050.2 | 58.104 | 327 | 106 | 3 | 6 | 304 | 15 | 338 | 4.91e-126 | 367 |
| Msa1427200 | AT5G07250.1 | 60.061 | 328 | 116 | 3 | 21 | 337 | 22 | 345 | 5.70e-125 | 364 |
| Msa1427200 | AT3G53780.1 | 61.957 | 276 | 99 | 1 | 108 | 383 | 1 | 270 | 3.57e-124 | 359 |
| Msa1427200 | AT1G12750.4 | 56.066 | 305 | 129 | 2 | 33 | 335 | 6 | 307 | 6.25e-122 | 355 |
| Msa1427200 | AT1G12750.7 | 56.066 | 305 | 129 | 2 | 33 | 335 | 6 | 307 | 6.25e-122 | 355 |
| Msa1427200 | AT1G12750.6 | 56.066 | 305 | 129 | 2 | 33 | 335 | 6 | 307 | 6.25e-122 | 355 |
| Msa1427200 | AT1G12750.3 | 56.066 | 305 | 129 | 2 | 33 | 335 | 6 | 307 | 6.25e-122 | 355 |
| Msa1427200 | AT1G12750.1 | 56.066 | 305 | 129 | 2 | 33 | 335 | 6 | 307 | 6.25e-122 | 355 |
| Msa1427200 | AT3G53780.3 | 62.547 | 267 | 92 | 2 | 35 | 301 | 54 | 312 | 2.33e-114 | 336 |
| Msa1427200 | AT1G52580.1 | 54.209 | 297 | 127 | 6 | 20 | 311 | 4 | 296 | 4.39e-97 | 292 |
| Msa1427200 | AT1G77860.2 | 44.083 | 338 | 184 | 4 | 48 | 382 | 49 | 384 | 1.12e-96 | 293 |
| Msa1427200 | AT4G23070.1 | 55.326 | 291 | 125 | 2 | 44 | 334 | 28 | 313 | 1.51e-93 | 283 |
| Msa1427200 | AT5G07250.2 | 49.695 | 328 | 103 | 4 | 21 | 337 | 22 | 298 | 1.55e-88 | 270 |
| Msa1427200 | AT1G77860.1 | 45.151 | 299 | 159 | 4 | 48 | 343 | 49 | 345 | 1.28e-84 | 261 |
| Msa1427200 | AT1G12750.5 | 60.326 | 184 | 71 | 1 | 33 | 214 | 6 | 189 | 2.42e-76 | 235 |
| Msa1427200 | AT1G12750.2 | 59.893 | 187 | 73 | 1 | 33 | 217 | 6 | 192 | 4.45e-76 | 234 |
Find 114 sgRNAs with CRISPR-Local
Find 204 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTCAGGGTCTTGTTGGATTC+TGG | 0.167687 | tig0026171:+31701 | Msa1427200:five_prime_UTR |
| ATTCGGCTTGAACAAGAATT+TGG | 0.175005 | tig0026171:+33216 | Msa1427200:CDS |
| AAATGCTGTCGAATATTATT+AGG | 0.205490 | tig0026171:+34822 | Msa1427200:three_prime_UTR |
| TGATTCGTCCTCAGTTTAAA+TGG | 0.238851 | tig0026171:+33861 | Msa1427200:CDS |
| CTCTATGTGATATCTGGTTT+TGG | 0.246364 | tig0026171:+33464 | Msa1427200:CDS |
| GGATTTCTCTATGTGATATC+TGG | 0.262897 | tig0026171:+33458 | Msa1427200:CDS |
| TCTCAGAGCTCTTCATTAAT+TGG | 0.278075 | tig0026171:+33573 | Msa1427200:CDS |
| AATGGAATGGAAGATATATT+TGG | 0.280921 | tig0026171:+34768 | Msa1427200:three_prime_UTR |
| TCTTTCCTATTACTCATTGC+AGG | 0.286895 | tig0026171:+33974 | Msa1427200:CDS |
| CTTACCCTGCAATGAGTAAT+AGG | 0.292148 | tig0026171:-33979 | None:intergenic |
| TTCGCTCATCTAGGAGGATT+TGG | 0.297054 | tig0026171:+33809 | Msa1427200:CDS |
| GGCGCCTTGTCTCTTGTATA+TGG | 0.304879 | tig0026171:+33136 | Msa1427200:CDS |
| CTTGAACAAGAATTTGGATT+TGG | 0.310501 | tig0026171:+33222 | Msa1427200:CDS |
| ATCTGAAATCTTTGTTCAAA+AGG | 0.315789 | tig0026171:+31854 | Msa1427200:five_prime_UTR |
| CATCTAGGAGGATTTGGTTC+TGG | 0.319719 | tig0026171:+33815 | Msa1427200:CDS |
| AACAAATTCCTAACTTTGTC+AGG | 0.325137 | tig0026171:+31684 | Msa1427200:five_prime_UTR |
| TCACTCGTGATCGTGATTTC+AGG | 0.355861 | tig0026171:+31999 | Msa1427200:CDS |
| TTGTGTATATGATTCATTCT+TGG | 0.360552 | tig0026171:+34586 | Msa1427200:three_prime_UTR |
| TAACTTTGTCAGGGTCTTGT+TGG | 0.364641 | tig0026171:+31694 | Msa1427200:five_prime_UTR |
| CTTAAAGAAAACCCTCTCTT+TGG | 0.366436 | tig0026171:+32175 | Msa1427200:CDS |
| TGGCACCACCGTTGAGGTTA+AGG | 0.367443 | tig0026171:+31928 | Msa1427200:CDS |
| GGCATCTCAGTTGGTGCATC+TGG | 0.372637 | tig0026171:+33521 | Msa1427200:CDS |
| TTTGGTTCTGGCTTTCTGCT+TGG | 0.373387 | tig0026171:+33827 | Msa1427200:CDS |
| CTTGTATATGGTTGCATGGT+GGG | 0.379600 | tig0026171:+33148 | Msa1427200:CDS |
| TGTCCTTTCGCAGTTAGAAT+TGG | 0.379685 | tig0026171:+33437 | Msa1427200:intron |
| TTGGACGATATATGCCAATA+AGG | 0.382911 | tig0026171:+33592 | Msa1427200:CDS |
| GGTGCATCTGGTGCATTGTT+TGG | 0.382955 | tig0026171:+33533 | Msa1427200:CDS |
| AGCCAACAACAGTCTAAATC+TGG | 0.385356 | tig0026171:+33887 | Msa1427200:CDS |
| ATCCAGATTTAGACTGTTGT+TGG | 0.400472 | tig0026171:-33889 | None:intergenic |
| AACAAGACCCTGACAAAGTT+AGG | 0.404982 | tig0026171:-31692 | None:intergenic |
| AATGCTGTCGAATATTATTA+GGG | 0.406993 | tig0026171:+34823 | Msa1427200:three_prime_UTR |
| GTTGTGTTCCTACCTCAAAA+TGG | 0.409054 | tig0026171:+34226 | Msa1427200:CDS |
| TCTATGCAGACAACGGAATT+CGG | 0.409614 | tig0026171:+34406 | Msa1427200:intron |
| GAAATGGGTTTGAATCAGTT+AGG | 0.421296 | tig0026171:-31768 | None:intergenic |
| ACCGTATCAATATGTGTTGT+GGG | 0.439348 | tig0026171:+33946 | Msa1427200:CDS |
| GTTGTAATAAATTTAGCTGT+TGG | 0.441288 | tig0026171:+33764 | Msa1427200:CDS |
| TTGTTCTCAGTCGGCAATGA+TGG | 0.441972 | tig0026171:+34626 | Msa1427200:three_prime_UTR |
| GTCTGCGTTATTCATACAAA+CGG | 0.445629 | tig0026171:+33499 | Msa1427200:CDS |
| TCTGAAATCTTTGTTCAAAA+GGG | 0.452645 | tig0026171:+31855 | Msa1427200:five_prime_UTR |
| GGGTCTTGTTGGATTCTGGC+TGG | 0.453364 | tig0026171:+31705 | Msa1427200:five_prime_UTR |
| TGTCCTGAGAATGCATTTCA+TGG | 0.455723 | tig0026171:+32109 | Msa1427200:CDS |
| AGTAATAAACTTATGATGGC+TGG | 0.458120 | tig0026171:-34661 | None:intergenic |
| GGTGCATTGTTTGGCTTACT+CGG | 0.462230 | tig0026171:+33542 | Msa1427200:CDS |
| AAAGAGAATCTTCCAAGAAA+AGG | 0.470067 | tig0026171:-32145 | None:intergenic |
| TTTCAGGCTCTTTAAGCAAT+GGG | 0.470163 | tig0026171:+32015 | Msa1427200:CDS |
| GTTGACAATTTCGCTCATCT+AGG | 0.472592 | tig0026171:+33800 | Msa1427200:CDS |
| ACACATGCAAAATTTCTTGA+AGG | 0.474975 | tig0026171:+34547 | Msa1427200:three_prime_UTR |
| GTCTCTTGTATATGGTTGCA+TGG | 0.482616 | tig0026171:+33144 | Msa1427200:CDS |
| TAATAGTAATAAACTTATGA+TGG | 0.486847 | tig0026171:-34665 | None:intergenic |
| TACCGTATCAATATGTGTTG+TGG | 0.492632 | tig0026171:+33945 | Msa1427200:CDS |
| ATATTATTAGGGATATGTTA+AGG | 0.495652 | tig0026171:+34834 | Msa1427200:three_prime_UTR |
| TCTTTAAGCAATGGGTTCCA+TGG | 0.504864 | tig0026171:+32023 | Msa1427200:CDS |
| TACCTCAAAATGGAGTTGTC+AGG | 0.507679 | tig0026171:+34236 | Msa1427200:CDS |
| GGGATGGTTCTACTCTTTCG+AGG | 0.511587 | tig0026171:+34162 | Msa1427200:CDS |
| ATTTCAGGCTCTTTAAGCAA+TGG | 0.516293 | tig0026171:+32014 | Msa1427200:CDS |
| CATTGTTTGGCTTACTCGGA+GGG | 0.524954 | tig0026171:+33546 | Msa1427200:CDS |
| ACGTTGGCAAACACAAAAGT+TGG | 0.526318 | tig0026171:-32052 | None:intergenic |
| CTTTGTTCGCAACTTTGCCA+TGG | 0.528366 | tig0026171:+34514 | Msa1427200:CDS |
| TTCAAAATCATCTATAATCA+CGG | 0.533216 | tig0026171:+31788 | Msa1427200:five_prime_UTR |
| CTTTCCTATTACTCATTGCA+GGG | 0.535119 | tig0026171:+33975 | Msa1427200:CDS |
| GTACCATGAAATGCATTCTC+AGG | 0.536653 | tig0026171:-32112 | None:intergenic |
| TCAACATGTTGGCAAGTACA+TGG | 0.537008 | tig0026171:-33176 | None:intergenic |
| ACCCACAACACATATTGATA+CGG | 0.539971 | tig0026171:-33947 | None:intergenic |
| AAATCACGATCACGAGTGAC+GGG | 0.541550 | tig0026171:-31995 | None:intergenic |
| TGACAGATTCATTACTGGGA+TGG | 0.543513 | tig0026171:+34146 | Msa1427200:intron |
| TAAACTGAGGACGAATCAAA+AGG | 0.544513 | tig0026171:-33856 | None:intergenic |
| TGCTCTAGAAGTAGATAAAG+TGG | 0.545530 | tig0026171:+33095 | Msa1427200:CDS |
| AGAAATTCGTTGTTCTCAGT+CGG | 0.545619 | tig0026171:+34617 | Msa1427200:three_prime_UTR |
| CACATGCAAAATTTCTTGAA+GGG | 0.545781 | tig0026171:+34548 | Msa1427200:three_prime_UTR |
| AAAACTCACGTAAAGGAAGA+AGG | 0.547703 | tig0026171:-32199 | None:intergenic |
| GACAATTTCGCTCATCTAGG+AGG | 0.549429 | tig0026171:+33803 | Msa1427200:CDS |
| TCTGCGTTATTCATACAAAC+GGG | 0.553724 | tig0026171:+33500 | Msa1427200:CDS |
| AAGAGAGCAAAGGAATGGAA+TGG | 0.554489 | tig0026171:+34755 | Msa1427200:three_prime_UTR |
| ACAAAAGTTGGAACAAGCCA+TGG | 0.556908 | tig0026171:-32040 | None:intergenic |
| ATACAAACGGGCATCTCAGT+TGG | 0.569101 | tig0026171:+33512 | Msa1427200:CDS |
| GAAATCACGATCACGAGTGA+CGG | 0.572889 | tig0026171:-31996 | None:intergenic |
| ACGACGAAGACGGAGACCCA+CGG | 0.573842 | tig0026171:-31961 | None:intergenic |
| ATCAAAAGAGAGCAAAGGAA+TGG | 0.574326 | tig0026171:+34750 | Msa1427200:three_prime_UTR |
| TCAACGGTGGTGCCACCATG+TGG | 0.575383 | tig0026171:-31920 | None:intergenic |
| CATGTGTATCTATCTATCCA+TGG | 0.577916 | tig0026171:-34531 | None:intergenic |
| AAATCATAATCATGAGTGGA+GGG | 0.582372 | tig0026171:+31891 | Msa1427200:exon |
| TTGTATATGGTTGCATGGTG+GGG | 0.585338 | tig0026171:+33149 | Msa1427200:CDS |
| AGGAAGAAGGACCAAAGAGA+GGG | 0.589526 | tig0026171:-32186 | None:intergenic |
| AAACAATTCTCCACAGACAA+AGG | 0.590975 | tig0026171:+31735 | Msa1427200:five_prime_UTR |
| ACAAATTCCTAACTTTGTCA+GGG | 0.594817 | tig0026171:+31685 | Msa1427200:five_prime_UTR |
| TGGTTCATGAACACGAAGGT+TGG | 0.597343 | tig0026171:+33115 | Msa1427200:CDS |
| AACAATGAAAATAATAACGT+TGG | 0.597447 | tig0026171:-32068 | None:intergenic |
| GGAACAAAGCATTTATTGTG+AGG | 0.597670 | tig0026171:+34257 | Msa1427200:CDS |
| TTAAGGTTCATCCTCGCCGT+GGG | 0.597978 | tig0026171:+31945 | Msa1427200:CDS |
| TCTTGTATATGGTTGCATGG+TGG | 0.604832 | tig0026171:+33147 | Msa1427200:CDS |
| GCATTGTTTGGCTTACTCGG+AGG | 0.606501 | tig0026171:+33545 | Msa1427200:CDS |
| GTTAAGGTTCATCCTCGCCG+TGG | 0.606777 | tig0026171:+31944 | Msa1427200:CDS |
| CGAAATTGTCAACATGTGGA+AGG | 0.611940 | tig0026171:-33790 | None:intergenic |
| TGAGCGAAATTGTCAACATG+TGG | 0.615330 | tig0026171:-33794 | None:intergenic |
| GGATTCGACGACGACGAAGA+CGG | 0.615599 | tig0026171:-31971 | None:intergenic |
| CAACGGTGGTGCCACCATGT+GGG | 0.618108 | tig0026171:-31919 | None:intergenic |
| AACATCACATGCATGAGCAA+TGG | 0.619993 | tig0026171:+34439 | Msa1427200:CDS |
| ACATGGTGGCACCACCGTTG+AGG | 0.621441 | tig0026171:+31922 | Msa1427200:CDS |
| AAGGAAGAAGGACCAAAGAG+AGG | 0.633246 | tig0026171:-32187 | None:intergenic |
| TGGCTTATCCATTTAAACTG+AGG | 0.633333 | tig0026171:-33869 | None:intergenic |
| AAAATCATAATCATGAGTGG+AGG | 0.633390 | tig0026171:+31890 | Msa1427200:exon |
| CTATTATCAAAAGAGAGCAA+AGG | 0.634615 | tig0026171:+34745 | Msa1427200:three_prime_UTR |
| TCACGATCACGAGTGACGGG+AGG | 0.634822 | tig0026171:-31992 | None:intergenic |
| ACTTGAATGAACGTTGCTCG+TGG | 0.663668 | tig0026171:+34190 | Msa1427200:CDS |
| AGGATGAACCTTAACCTCAA+CGG | 0.671763 | tig0026171:-31936 | None:intergenic |
| TCATAATCATGAGTGGAGGG+AGG | 0.674267 | tig0026171:+31894 | Msa1427200:exon |
| GAAGACGGAGACCCACGGCG+AGG | 0.680052 | tig0026171:-31956 | None:intergenic |
| GAAGAGCTAGTATTCGACAG+AGG | 0.682346 | tig0026171:-34478 | None:intergenic |
| AGTGGAGGGAGGAACCCACA+TGG | 0.690830 | tig0026171:+31905 | Msa1427200:CDS |
| GCAACCATATACAAGAGACA+AGG | 0.709780 | tig0026171:-33140 | None:intergenic |
| AAAATCATCTATAATCACGG+AGG | 0.711965 | tig0026171:+31791 | Msa1427200:five_prime_UTR |
| ATGAACCTTAACCTCAACGG+TGG | 0.726735 | tig0026171:-31933 | None:intergenic |
| GGAGGGAGGAACCCACATGG+TGG | 0.736064 | tig0026171:+31908 | Msa1427200:CDS |
| AAAGTGGTTCATGAACACGA+AGG | 0.793505 | tig0026171:+33111 | Msa1427200:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TGATTATGATTTTTTTTTTT+TGG | - | tig0026171:31883-31902 | None:intergenic | 10.0% |
| !!! | ATTATAGATGATTTTGAAAT+GGG | - | tig0026171:31786-31805 | None:intergenic | 15.0% |
| !! | AATGATATAAATACAGATAA+TGG | - | tig0026171:33315-33334 | None:intergenic | 15.0% |
| !! | AAGACAATAAATTATTTATC+AGG | - | tig0026171:33656-33675 | None:intergenic | 15.0% |
| !! | TAAATAATTTATTGTCTTTG+CGG | + | tig0026171:33658-33677 | Msa1427200:intron | 15.0% |
| !! | ATATTACCTTTAATATTCTT+AGG | + | tig0026171:34030-34049 | Msa1427200:intron | 15.0% |
| !!! | GTTTTTTCTTTTATCTAAAT+TGG | + | tig0026171:34369-34388 | Msa1427200:intron | 15.0% |
| !! | TAATAGTAATAAACTTATGA+TGG | - | tig0026171:34668-34687 | None:intergenic | 15.0% |
| !!! | GATTATAGATGATTTTGAAA+TGG | - | tig0026171:31787-31806 | None:intergenic | 20.0% |
| !! | TTCAAAATCATCTATAATCA+CGG | + | tig0026171:31788-31807 | Msa1427200:five_prime_UTR | 20.0% |
| !! | AAAAAAATCATAATCATGAG+TGG | + | tig0026171:31887-31906 | Msa1427200:exon | 20.0% |
| !! | AACAATGAAAATAATAACGT+TGG | - | tig0026171:32071-32090 | None:intergenic | 20.0% |
| !! | TACATTAATCAAGTTATGAT+TGG | + | tig0026171:32302-32321 | Msa1427200:intron | 20.0% |
| !! | ATGAACATGTGTTTATAAAT+GGG | + | tig0026171:32645-32664 | Msa1427200:intron | 20.0% |
| !!! | TTGTTTTTACATAAATGTTC+TGG | + | tig0026171:33333-33352 | Msa1427200:intron | 20.0% |
| !!! | AGTAGTATTTAATCTAAAGT+TGG | + | tig0026171:34116-34135 | Msa1427200:intron | 20.0% |
| !!! | AATTTTTTTTCCTTTGTCTG+TGG | - | tig0026171:31748-31767 | None:intergenic | 25.0% |
| !! | ATCTGAAATCTTTGTTCAAA+AGG | + | tig0026171:31854-31873 | Msa1427200:five_prime_UTR | 25.0% |
| !! | TCTGAAATCTTTGTTCAAAA+GGG | + | tig0026171:31855-31874 | Msa1427200:five_prime_UTR | 25.0% |
| ! | TTAATCAAGTTATGATTGGT+TGG | + | tig0026171:32306-32325 | Msa1427200:intron | 25.0% |
| ! | CATGAACATGTGTTTATAAA+TGG | + | tig0026171:32644-32663 | Msa1427200:intron | 25.0% |
| ! | TGAACATGTGTTTATAAATG+GGG | + | tig0026171:32646-32665 | Msa1427200:intron | 25.0% |
| ! | TTCATAGATTACATTCTCTA+TGG | + | tig0026171:32887-32906 | Msa1427200:intron | 25.0% |
| ! | GCTATTGCAAATACATAATT+TGG | - | tig0026171:32966-32985 | None:intergenic | 25.0% |
| ! | TATGTATTTGCAATAGCTAA+TGG | + | tig0026171:32969-32988 | Msa1427200:intron | 25.0% |
| !! | ACAGTACCAATCTTAATTTT+AGG | + | tig0026171:32992-33011 | Msa1427200:intron | 25.0% |
| ! | TATCTGCCTAAAATTAAGAT+TGG | - | tig0026171:33001-33020 | None:intergenic | 25.0% |
| !! | ATGTTGAGTCTTCTTTTTAT+TGG | + | tig0026171:33192-33211 | Msa1427200:CDS | 25.0% |
| !! | GTCTTCTTTTTATTGGAATT+CGG | + | tig0026171:33199-33218 | Msa1427200:CDS | 25.0% |
| !!! | TTTTAGTTCATTCACCTTAT+TGG | - | tig0026171:33609-33628 | None:intergenic | 25.0% |
| ! | CAAAATGGAAAGAAATAGAA+TGG | - | tig0026171:33696-33715 | None:intergenic | 25.0% |
| ! | GTTGTAATAAATTTAGCTGT+TGG | + | tig0026171:33764-33783 | Msa1427200:CDS | 25.0% |
| !!! | AATTTTGACAGATTCATTAC+TGG | + | tig0026171:34141-34160 | Msa1427200:intron | 25.0% |
| !!! | ATTTTGACAGATTCATTACT+GGG | + | tig0026171:34142-34161 | Msa1427200:intron | 25.0% |
| ! | GAACTAGAAAATAGAATTGA+TGG | - | tig0026171:34308-34327 | None:intergenic | 25.0% |
| ! | TTGTGTATATGATTCATTCT+TGG | + | tig0026171:34586-34605 | Msa1427200:three_prime_UTR | 25.0% |
| ! | AATGGAATGGAAGATATATT+TGG | + | tig0026171:34768-34787 | Msa1427200:three_prime_UTR | 25.0% |
| ! | AAATGCTGTCGAATATTATT+AGG | + | tig0026171:34822-34841 | Msa1427200:three_prime_UTR | 25.0% |
| ! | AATGCTGTCGAATATTATTA+GGG | + | tig0026171:34823-34842 | Msa1427200:three_prime_UTR | 25.0% |
| AACAAATTCCTAACTTTGTC+AGG | + | tig0026171:31684-31703 | Msa1427200:five_prime_UTR | 30.0% | |
| ACAAATTCCTAACTTTGTCA+GGG | + | tig0026171:31685-31704 | Msa1427200:five_prime_UTR | 30.0% | |
| AAAATCATCTATAATCACGG+AGG | + | tig0026171:31791-31810 | Msa1427200:five_prime_UTR | 30.0% | |
| AAAATCATAATCATGAGTGG+AGG | + | tig0026171:31890-31909 | Msa1427200:exon | 30.0% | |
| AAATCATAATCATGAGTGGA+GGG | + | tig0026171:31891-31910 | Msa1427200:exon | 30.0% | |
| AAAGAGAATCTTCCAAGAAA+AGG | - | tig0026171:32148-32167 | None:intergenic | 30.0% | |
| GAAAAAGAAAACTCACGTAA+AGG | - | tig0026171:32209-32228 | None:intergenic | 30.0% | |
| TGAGAATGAGTTTATTAGTG+TGG | + | tig0026171:32427-32446 | Msa1427200:intron | 30.0% | |
| ! | ACACTTTAGATGTCTAAGAT+TGG | + | tig0026171:32580-32599 | Msa1427200:intron | 30.0% |
| ! | CACTTTAGATGTCTAAGATT+GGG | + | tig0026171:32581-32600 | Msa1427200:intron | 30.0% |
| ! | ACTTTAGATGTCTAAGATTG+GGG | + | tig0026171:32582-32601 | Msa1427200:intron | 30.0% |
| GAACATGTGTTTATAAATGG+GGG | + | tig0026171:32647-32666 | Msa1427200:intron | 30.0% | |
| AACATGTGTTTATAAATGGG+GGG | + | tig0026171:32648-32667 | Msa1427200:intron | 30.0% | |
| !! | AGTTAAATTGATTCGAGCTA+AGG | + | tig0026171:32677-32696 | Msa1427200:intron | 30.0% |
| !! | GTTAAATTGATTCGAGCTAA+GGG | + | tig0026171:32678-32697 | Msa1427200:intron | 30.0% |
| TTAATATTTACTCCTTCGTC+CGG | - | tig0026171:32733-32752 | None:intergenic | 30.0% | |
| AACAAAAACGTGTGTTTGTA+AGG | + | tig0026171:32787-32806 | Msa1427200:intron | 30.0% | |
| AAAAACCTAATAGATGTGTG+AGG | + | tig0026171:32828-32847 | Msa1427200:intron | 30.0% | |
| AAAACCTAATAGATGTGTGA+GGG | + | tig0026171:32829-32848 | Msa1427200:intron | 30.0% | |
| GAATGTAATCTATGAATCAC+CGG | - | tig0026171:32883-32902 | None:intergenic | 30.0% | |
| ! | TTTTAGGCAGATATATCTCT+TGG | + | tig0026171:33008-33027 | Msa1427200:intron | 30.0% |
| ! | ATTTTCAGATTACAGGAGAT+GGG | + | tig0026171:33072-33091 | Msa1427200:intron | 30.0% |
| AAAAAGAAGACTCAACATGT+TGG | - | tig0026171:33190-33209 | None:intergenic | 30.0% | |
| CTTGAACAAGAATTTGGATT+TGG | + | tig0026171:33222-33241 | Msa1427200:CDS | 30.0% | |
| ! | ACAAGAATTTGGATTTGGTA+TGG | + | tig0026171:33227-33246 | Msa1427200:intron | 30.0% |
| !! | TACAGATAATGGAATACTGT+TGG | - | tig0026171:33304-33323 | None:intergenic | 30.0% |
| GGAAAGAAATAGAATGGTTT+AGG | - | tig0026171:33690-33709 | None:intergenic | 30.0% | |
| CAAAACATCATGAGACAAAA+TGG | - | tig0026171:33711-33730 | None:intergenic | 30.0% | |
| CCAAGTCCTAAGAATATTAA+AGG | - | tig0026171:34039-34058 | None:intergenic | 30.0% | |
| CCTTTAATATTCTTAGGACT+TGG | + | tig0026171:34036-34055 | Msa1427200:intron | 30.0% | |
| ACAATATTCTATGCAGACAA+CGG | + | tig0026171:34399-34418 | Msa1427200:intron | 30.0% | |
| ACACATGCAAAATTTCTTGA+AGG | + | tig0026171:34547-34566 | Msa1427200:three_prime_UTR | 30.0% | |
| CACATGCAAAATTTCTTGAA+GGG | + | tig0026171:34548-34567 | Msa1427200:three_prime_UTR | 30.0% | |
| AGTAATAAACTTATGATGGC+TGG | - | tig0026171:34664-34683 | None:intergenic | 30.0% | |
| CTATTATCAAAAGAGAGCAA+AGG | + | tig0026171:34745-34764 | Msa1427200:three_prime_UTR | 30.0% | |
| AAACAATTCTCCACAGACAA+AGG | + | tig0026171:31735-31754 | Msa1427200:five_prime_UTR | 35.0% | |
| ! | GAAATGGGTTTGAATCAGTT+AGG | - | tig0026171:31771-31790 | None:intergenic | 35.0% |
| ATTTCAGGCTCTTTAAGCAA+TGG | + | tig0026171:32014-32033 | Msa1427200:CDS | 35.0% | |
| TTTCAGGCTCTTTAAGCAAT+GGG | + | tig0026171:32015-32034 | Msa1427200:CDS | 35.0% | |
| ! | AAGAGAGGGTTTTCTTTAAG+TGG | - | tig0026171:32175-32194 | None:intergenic | 35.0% |
| CTTAAAGAAAACCCTCTCTT+TGG | + | tig0026171:32175-32194 | Msa1427200:CDS | 35.0% | |
| AAAACTCACGTAAAGGAAGA+AGG | - | tig0026171:32202-32221 | None:intergenic | 35.0% | |
| ! | CTTTAGATGTCTAAGATTGG+GGG | + | tig0026171:32583-32602 | Msa1427200:intron | 35.0% |
| TAATATTTACTCCTTCGTCC+GGG | - | tig0026171:32732-32751 | None:intergenic | 35.0% | |
| ! | TACTCGCATTTTCAGATTAC+AGG | + | tig0026171:33065-33084 | Msa1427200:intron | 35.0% |
| ! | CATTTTCAGATTACAGGAGA+TGG | + | tig0026171:33071-33090 | Msa1427200:intron | 35.0% |
| !! | TGCTCTAGAAGTAGATAAAG+TGG | + | tig0026171:33095-33114 | Msa1427200:CDS | 35.0% |
| ! | ATTCGGCTTGAACAAGAATT+TGG | + | tig0026171:33216-33235 | Msa1427200:CDS | 35.0% |
| ! | ATTTGGATTTGGTATGGTTC+TGG | + | tig0026171:33233-33252 | Msa1427200:intron | 35.0% |
| CGATATACTTGAACAATGCA+AGG | - | tig0026171:33266-33285 | None:intergenic | 35.0% | |
| !! | GATAATGGAATACTGTTGGT+CGG | - | tig0026171:33300-33319 | None:intergenic | 35.0% |
| AATCCAATTCTAACTGCGAA+AGG | - | tig0026171:33443-33462 | None:intergenic | 35.0% | |
| GGATTTCTCTATGTGATATC+TGG | + | tig0026171:33458-33477 | Msa1427200:CDS | 35.0% | |
| !! | CTCTATGTGATATCTGGTTT+TGG | + | tig0026171:33464-33483 | Msa1427200:CDS | 35.0% |
| !!! | TATGTGATATCTGGTTTTGG+AGG | + | tig0026171:33467-33486 | Msa1427200:CDS | 35.0% |
| !!! | ATGTGATATCTGGTTTTGGA+GGG | + | tig0026171:33468-33487 | Msa1427200:CDS | 35.0% |
| GTCTGCGTTATTCATACAAA+CGG | + | tig0026171:33499-33518 | Msa1427200:CDS | 35.0% | |
| TCTGCGTTATTCATACAAAC+GGG | + | tig0026171:33500-33519 | Msa1427200:CDS | 35.0% | |
| TCTCAGAGCTCTTCATTAAT+TGG | + | tig0026171:33573-33592 | Msa1427200:CDS | 35.0% | |
| TTGGACGATATATGCCAATA+AGG | + | tig0026171:33592-33611 | Msa1427200:CDS | 35.0% | |
| TAAACTGAGGACGAATCAAA+AGG | - | tig0026171:33859-33878 | None:intergenic | 35.0% | |
| TGATTCGTCCTCAGTTTAAA+TGG | + | tig0026171:33861-33880 | Msa1427200:CDS | 35.0% | |
| TGGCTTATCCATTTAAACTG+AGG | - | tig0026171:33872-33891 | None:intergenic | 35.0% | |
| ATCCAGATTTAGACTGTTGT+TGG | - | tig0026171:33892-33911 | None:intergenic | 35.0% | |
| TACCGTATCAATATGTGTTG+TGG | + | tig0026171:33945-33964 | Msa1427200:CDS | 35.0% | |
| ACCGTATCAATATGTGTTGT+GGG | + | tig0026171:33946-33965 | Msa1427200:CDS | 35.0% | |
| ACCCACAACACATATTGATA+CGG | - | tig0026171:33950-33969 | None:intergenic | 35.0% | |
| TCTTTCCTATTACTCATTGC+AGG | + | tig0026171:33974-33993 | Msa1427200:CDS | 35.0% | |
| CTTTCCTATTACTCATTGCA+GGG | + | tig0026171:33975-33994 | Msa1427200:CDS | 35.0% | |
| ! | GGAACAAAGCATTTATTGTG+AGG | + | tig0026171:34257-34276 | Msa1427200:CDS | 35.0% |
| CATGTGTATCTATCTATCCA+TGG | - | tig0026171:34534-34553 | None:intergenic | 35.0% | |
| AGAAATTCGTTGTTCTCAGT+CGG | + | tig0026171:34617-34636 | Msa1427200:three_prime_UTR | 35.0% | |
| ATCAAAAGAGAGCAAAGGAA+TGG | + | tig0026171:34750-34769 | Msa1427200:three_prime_UTR | 35.0% | |
| AACAAGACCCTGACAAAGTT+AGG | - | tig0026171:31695-31714 | None:intergenic | 40.0% | |
| ! | TAACTTTGTCAGGGTCTTGT+TGG | + | tig0026171:31694-31713 | Msa1427200:five_prime_UTR | 40.0% |
| AGGATGAACCTTAACCTCAA+CGG | - | tig0026171:31939-31958 | None:intergenic | 40.0% | |
| ! | TCTTTAAGCAATGGGTTCCA+TGG | + | tig0026171:32023-32042 | Msa1427200:CDS | 40.0% |
| ACAAAAGTTGGAACAAGCCA+TGG | - | tig0026171:32043-32062 | None:intergenic | 40.0% | |
| ACGTTGGCAAACACAAAAGT+TGG | - | tig0026171:32055-32074 | None:intergenic | 40.0% | |
| TGTCCTGAGAATGCATTTCA+TGG | + | tig0026171:32109-32128 | Msa1427200:CDS | 40.0% | |
| GTACCATGAAATGCATTCTC+AGG | - | tig0026171:32115-32134 | None:intergenic | 40.0% | |
| !! | ACTTGTGTTGCTCCTTTTCT+TGG | + | tig0026171:32133-32152 | Msa1427200:CDS | 40.0% |
| !! | GCCAGTTTTGTGAATGAGTT+AGG | + | tig0026171:32468-32487 | Msa1427200:intron | 40.0% |
| GCCTAACTCATTCACAAAAC+TGG | - | tig0026171:32472-32491 | None:intergenic | 40.0% | |
| ! | ATGTCTAAGATTGGGGGTAA+GGG | + | tig0026171:32589-32608 | Msa1427200:intron | 40.0% |
| TGTGTTTATAAATGGGGGGT+TGG | + | tig0026171:32652-32671 | Msa1427200:intron | 40.0% | |
| GTGTTTATAAATGGGGGGTT+GGG | + | tig0026171:32653-32672 | Msa1427200:intron | 40.0% | |
| GTGTGTTTGTAAGGATGCAT+AGG | + | tig0026171:32796-32815 | Msa1427200:intron | 40.0% | |
| ACAACCCTCACACATCTATT+AGG | - | tig0026171:32836-32855 | None:intergenic | 40.0% | |
| AAAGTGGTTCATGAACACGA+AGG | + | tig0026171:33111-33130 | Msa1427200:CDS | 40.0% | |
| GCAACCATATACAAGAGACA+AGG | - | tig0026171:33143-33162 | None:intergenic | 40.0% | |
| GTCTCTTGTATATGGTTGCA+TGG | + | tig0026171:33144-33163 | Msa1427200:CDS | 40.0% | |
| TCTTGTATATGGTTGCATGG+TGG | + | tig0026171:33147-33166 | Msa1427200:CDS | 40.0% | |
| CTTGTATATGGTTGCATGGT+GGG | + | tig0026171:33148-33167 | Msa1427200:CDS | 40.0% | |
| TTGTATATGGTTGCATGGTG+GGG | + | tig0026171:33149-33168 | Msa1427200:CDS | 40.0% | |
| TCAACATGTTGGCAAGTACA+TGG | - | tig0026171:33179-33198 | None:intergenic | 40.0% | |
| TAACTGCGAAAGGACAAGAA+AGG | - | tig0026171:33433-33452 | None:intergenic | 40.0% | |
| TGTCCTTTCGCAGTTAGAAT+TGG | + | tig0026171:33437-33456 | Msa1427200:intron | 40.0% | |
| ! | GTCTCATGATGTTTTGCAGA+TGG | + | tig0026171:33715-33734 | Msa1427200:intron | 40.0% |
| CGAAATTGTCAACATGTGGA+AGG | - | tig0026171:33793-33812 | None:intergenic | 40.0% | |
| TGAGCGAAATTGTCAACATG+TGG | - | tig0026171:33797-33816 | None:intergenic | 40.0% | |
| GTTGACAATTTCGCTCATCT+AGG | + | tig0026171:33800-33819 | Msa1427200:CDS | 40.0% | |
| AGCCAACAACAGTCTAAATC+TGG | + | tig0026171:33887-33906 | Msa1427200:CDS | 40.0% | |
| CTTACCCTGCAATGAGTAAT+AGG | - | tig0026171:33982-34001 | None:intergenic | 40.0% | |
| TGACAGATTCATTACTGGGA+TGG | + | tig0026171:34146-34165 | Msa1427200:intron | 40.0% | |
| GTTGTGTTCCTACCTCAAAA+TGG | + | tig0026171:34226-34245 | Msa1427200:CDS | 40.0% | |
| !!! | TGACAACTCCATTTTGAGGT+AGG | - | tig0026171:34237-34256 | None:intergenic | 40.0% |
| TACCTCAAAATGGAGTTGTC+AGG | + | tig0026171:34236-34255 | Msa1427200:CDS | 40.0% | |
| ! | TTCCTGACAACTCCATTTTG+AGG | - | tig0026171:34241-34260 | None:intergenic | 40.0% |
| TCTATGCAGACAACGGAATT+CGG | + | tig0026171:34406-34425 | Msa1427200:intron | 40.0% | |
| AACATCACATGCATGAGCAA+TGG | + | tig0026171:34439-34458 | Msa1427200:CDS | 40.0% | |
| AAGAGAGCAAAGGAATGGAA+TGG | + | tig0026171:34755-34774 | Msa1427200:three_prime_UTR | 40.0% | |
| TCATAATCATGAGTGGAGGG+AGG | + | tig0026171:31894-31913 | Msa1427200:exon | 45.0% | |
| ATGAACCTTAACCTCAACGG+TGG | - | tig0026171:31936-31955 | None:intergenic | 45.0% | |
| AAATCACGATCACGAGTGAC+GGG | - | tig0026171:31998-32017 | None:intergenic | 45.0% | |
| GAAATCACGATCACGAGTGA+CGG | - | tig0026171:31999-32018 | None:intergenic | 45.0% | |
| TCACTCGTGATCGTGATTTC+AGG | + | tig0026171:31999-32018 | Msa1427200:CDS | 45.0% | |
| AGGAAGAAGGACCAAAGAGA+GGG | - | tig0026171:32189-32208 | None:intergenic | 45.0% | |
| AAGGAAGAAGGACCAAAGAG+AGG | - | tig0026171:32190-32209 | None:intergenic | 45.0% | |
| ! | CATCTAAAGTGTGACTCGTG+TGG | - | tig0026171:32572-32591 | None:intergenic | 45.0% |
| ! | GATGTCTAAGATTGGGGGTA+AGG | + | tig0026171:32588-32607 | Msa1427200:intron | 45.0% |
| CGAGCTAAGGGATAAGAAGT+TGG | + | tig0026171:32690-32709 | Msa1427200:intron | 45.0% | |
| GCTAAGGGATAAGAAGTTGG+AGG | + | tig0026171:32693-32712 | Msa1427200:intron | 45.0% | |
| !! | GGAGGTTCTAAGTTCAAACC+CGG | + | tig0026171:32711-32730 | Msa1427200:intron | 45.0% |
| TCTTGTGTCTGTGTCTCTAC+CGG | + | tig0026171:32861-32880 | Msa1427200:intron | 45.0% | |
| TGGTTCATGAACACGAAGGT+TGG | + | tig0026171:33115-33134 | Msa1427200:CDS | 45.0% | |
| ATACAAACGGGCATCTCAGT+TGG | + | tig0026171:33512-33531 | Msa1427200:CDS | 45.0% | |
| ! | GGTGCATTGTTTGGCTTACT+CGG | + | tig0026171:33542-33561 | Msa1427200:CDS | 45.0% |
| ! | CATTGTTTGGCTTACTCGGA+GGG | + | tig0026171:33546-33565 | Msa1427200:CDS | 45.0% |
| GACAATTTCGCTCATCTAGG+AGG | + | tig0026171:33803-33822 | Msa1427200:CDS | 45.0% | |
| TTCGCTCATCTAGGAGGATT+TGG | + | tig0026171:33809-33828 | Msa1427200:CDS | 45.0% | |
| ! | CATCTAGGAGGATTTGGTTC+TGG | + | tig0026171:33815-33834 | Msa1427200:CDS | 45.0% |
| !! | TTTGGTTCTGGCTTTCTGCT+TGG | + | tig0026171:33827-33846 | Msa1427200:CDS | 45.0% |
| ACTTGAATGAACGTTGCTCG+TGG | + | tig0026171:34190-34209 | Msa1427200:CDS | 45.0% | |
| GAAGAGCTAGTATTCGACAG+AGG | - | tig0026171:34481-34500 | None:intergenic | 45.0% | |
| CTTTGTTCGCAACTTTGCCA+TGG | + | tig0026171:34514-34533 | Msa1427200:CDS | 45.0% | |
| TTGTTCTCAGTCGGCAATGA+TGG | + | tig0026171:34626-34645 | Msa1427200:three_prime_UTR | 45.0% | |
| !! | GTCAGGGTCTTGTTGGATTC+TGG | + | tig0026171:31701-31720 | Msa1427200:five_prime_UTR | 50.0% |
| TTAAGGTTCATCCTCGCCGT+GGG | + | tig0026171:31945-31964 | Msa1427200:CDS | 50.0% | |
| ! | GATAATGGTGGCCAGATAGC+AGG | - | tig0026171:32546-32565 | None:intergenic | 50.0% |
| GCTATCTGGCCACCATTATC+AGG | + | tig0026171:32546-32565 | Msa1427200:intron | 50.0% | |
| TGACTCGTGTGGCCTGATAA+TGG | - | tig0026171:32561-32580 | None:intergenic | 50.0% | |
| CTAAGTTCAAACCCGGACGA+AGG | + | tig0026171:32718-32737 | Msa1427200:intron | 50.0% | |
| GGCGCCTTGTCTCTTGTATA+TGG | + | tig0026171:33136-33155 | Msa1427200:CDS | 50.0% | |
| GGTGCATCTGGTGCATTGTT+TGG | + | tig0026171:33533-33552 | Msa1427200:CDS | 50.0% | |
| ! | GCATTGTTTGGCTTACTCGG+AGG | + | tig0026171:33545-33564 | Msa1427200:CDS | 50.0% |
| ! | GGGATGGTTCTACTCTTTCG+AGG | + | tig0026171:34162-34181 | Msa1427200:CDS | 50.0% |
| !! | GGGTCTTGTTGGATTCTGGC+TGG | + | tig0026171:31705-31724 | Msa1427200:five_prime_UTR | 55.0% |
| TGGCACCACCGTTGAGGTTA+AGG | + | tig0026171:31928-31947 | Msa1427200:CDS | 55.0% | |
| GTTAAGGTTCATCCTCGCCG+TGG | + | tig0026171:31944-31963 | Msa1427200:CDS | 55.0% | |
| GGATTCGACGACGACGAAGA+CGG | - | tig0026171:31974-31993 | None:intergenic | 55.0% | |
| GCAGGCGGTTCAATGGATCT+TGG | - | tig0026171:32528-32547 | None:intergenic | 55.0% | |
| CCAGATAGCAGGCGGTTCAA+TGG | - | tig0026171:32535-32554 | None:intergenic | 55.0% | |
| CCATTGAACCGCCTGCTATC+TGG | + | tig0026171:32532-32551 | Msa1427200:intron | 55.0% | |
| AATGGTGGCCAGATAGCAGG+CGG | - | tig0026171:32543-32562 | None:intergenic | 55.0% | |
| !! | CTCGTGTGGCCTGATAATGG+TGG | - | tig0026171:32558-32577 | None:intergenic | 55.0% |
| ! | GGCATCTCAGTTGGTGCATC+TGG | + | tig0026171:33521-33540 | Msa1427200:CDS | 55.0% |
| AGTGGAGGGAGGAACCCACA+TGG | + | tig0026171:31905-31924 | Msa1427200:CDS | 60.0% | |
| !! | CAACGGTGGTGCCACCATGT+GGG | - | tig0026171:31922-31941 | None:intergenic | 60.0% |
| !! | TCAACGGTGGTGCCACCATG+TGG | - | tig0026171:31923-31942 | None:intergenic | 60.0% |
| ACATGGTGGCACCACCGTTG+AGG | + | tig0026171:31922-31941 | Msa1427200:CDS | 60.0% | |
| ACGACGAAGACGGAGACCCA+CGG | - | tig0026171:31964-31983 | None:intergenic | 60.0% | |
| ! | TCACGATCACGAGTGACGGG+AGG | - | tig0026171:31995-32014 | None:intergenic | 60.0% |
| GGAGGGAGGAACCCACATGG+TGG | + | tig0026171:31908-31927 | Msa1427200:CDS | 65.0% | |
| GAAGACGGAGACCCACGGCG+AGG | - | tig0026171:31959-31978 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0026171 | gene | 31644 | 34856 | 31644 | ID=Msa1427200;Name=Msa1427200 |
| tig0026171 | mRNA | 31644 | 34856 | 31644 | ID=Msa1427200-mRNA-1;Parent=Msa1427200;Name=Msa1427200-mRNA-1;_AED=0.11;_eAED=0.11;_QI=258|1|1|1|1|1|6|316|384 |
| tig0026171 | exon | 31644 | 32212 | 31644 | ID=Msa1427200-mRNA-1:exon:5299;Parent=Msa1427200-mRNA-1 |
| tig0026171 | exon | 33080 | 33243 | 33080 | ID=Msa1427200-mRNA-1:exon:5300;Parent=Msa1427200-mRNA-1 |
| tig0026171 | exon | 33450 | 33613 | 33450 | ID=Msa1427200-mRNA-1:exon:5301;Parent=Msa1427200-mRNA-1 |
| tig0026171 | exon | 33734 | 33996 | 33734 | ID=Msa1427200-mRNA-1:exon:5302;Parent=Msa1427200-mRNA-1 |
| tig0026171 | exon | 34152 | 34278 | 34152 | ID=Msa1427200-mRNA-1:exon:5303;Parent=Msa1427200-mRNA-1 |
| tig0026171 | exon | 34415 | 34856 | 34415 | ID=Msa1427200-mRNA-1:exon:5304;Parent=Msa1427200-mRNA-1 |
| tig0026171 | five_prime_UTR | 31644 | 31901 | 31644 | ID=Msa1427200-mRNA-1:five_prime_utr;Parent=Msa1427200-mRNA-1 |
| tig0026171 | CDS | 31902 | 32212 | 31902 | ID=Msa1427200-mRNA-1:cds;Parent=Msa1427200-mRNA-1 |
| tig0026171 | CDS | 33080 | 33243 | 33080 | ID=Msa1427200-mRNA-1:cds;Parent=Msa1427200-mRNA-1 |
| tig0026171 | CDS | 33450 | 33613 | 33450 | ID=Msa1427200-mRNA-1:cds;Parent=Msa1427200-mRNA-1 |
| tig0026171 | CDS | 33734 | 33996 | 33734 | ID=Msa1427200-mRNA-1:cds;Parent=Msa1427200-mRNA-1 |
| tig0026171 | CDS | 34152 | 34278 | 34152 | ID=Msa1427200-mRNA-1:cds;Parent=Msa1427200-mRNA-1 |
| tig0026171 | CDS | 34415 | 34540 | 34415 | ID=Msa1427200-mRNA-1:cds;Parent=Msa1427200-mRNA-1 |
| tig0026171 | three_prime_UTR | 34541 | 34856 | 34541 | ID=Msa1427200-mRNA-1:three_prime_utr;Parent=Msa1427200-mRNA-1 |
| Gene Sequence |
| Protein sequence |
