AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1427200


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1427200 MtrunA17_Chr2g0328271 96.875 384 11 1 1 384 1 383 0.0 763
Msa1427200 MtrunA17_Chr4g0009841 62.824 347 126 2 37 383 34 377 1.18e-168 476
Msa1427200 MtrunA17_Chr7g0238701 59.178 365 140 4 23 383 4 363 2.51e-150 429
Msa1427200 MtrunA17_Chr6g0472501 59.412 340 122 3 1 338 1 326 2.14e-127 369
Msa1427200 MtrunA17_Chr1g0203681 53.191 329 135 3 16 339 5 319 2.59e-113 333
Msa1427200 MtrunA17_Chr2g0332941 55.636 275 114 3 44 312 30 302 5.47e-99 296
Msa1427200 MtrunA17_Chr3g0115331 39.257 377 216 5 13 382 9 379 2.35e-87 269
Msa1427200 MtrunA17_Chr2g0322601 39.500 200 94 5 142 340 1 174 1.15e-32 120
Msa1427200 MtrunA17_Chr2g0322611 48.913 92 47 0 99 190 2 93 3.72e-23 92.8
Msa1427200 MtrunA17_Chr8g0392201 38.542 96 43 2 225 320 28 107 1.36e-11 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1427200 AT2G29050.1 62.434 378 139 2 6 383 15 389 1.25e-175 494
Msa1427200 AT3G53780.2 61.318 349 127 2 35 383 54 394 1.10e-153 439
Msa1427200 AT1G63120.1 63.946 294 98 2 44 335 30 317 1.09e-128 372
Msa1427200 AT2G29050.2 58.104 327 106 3 6 304 15 338 4.91e-126 367
Msa1427200 AT5G07250.1 60.061 328 116 3 21 337 22 345 5.70e-125 364
Msa1427200 AT3G53780.1 61.957 276 99 1 108 383 1 270 3.57e-124 359
Msa1427200 AT1G12750.4 56.066 305 129 2 33 335 6 307 6.25e-122 355
Msa1427200 AT1G12750.7 56.066 305 129 2 33 335 6 307 6.25e-122 355
Msa1427200 AT1G12750.6 56.066 305 129 2 33 335 6 307 6.25e-122 355
Msa1427200 AT1G12750.3 56.066 305 129 2 33 335 6 307 6.25e-122 355
Msa1427200 AT1G12750.1 56.066 305 129 2 33 335 6 307 6.25e-122 355
Msa1427200 AT3G53780.3 62.547 267 92 2 35 301 54 312 2.33e-114 336
Msa1427200 AT1G52580.1 54.209 297 127 6 20 311 4 296 4.39e-97 292
Msa1427200 AT1G77860.2 44.083 338 184 4 48 382 49 384 1.12e-96 293
Msa1427200 AT4G23070.1 55.326 291 125 2 44 334 28 313 1.51e-93 283
Msa1427200 AT5G07250.2 49.695 328 103 4 21 337 22 298 1.55e-88 270
Msa1427200 AT1G77860.1 45.151 299 159 4 48 343 49 345 1.28e-84 261
Msa1427200 AT1G12750.5 60.326 184 71 1 33 214 6 189 2.42e-76 235
Msa1427200 AT1G12750.2 59.893 187 73 1 33 217 6 192 4.45e-76 234

Find 114 sgRNAs with CRISPR-Local

Find 204 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTCAGGGTCTTGTTGGATTC+TGG 0.167687 tig0026171:+31701 Msa1427200:five_prime_UTR
ATTCGGCTTGAACAAGAATT+TGG 0.175005 tig0026171:+33216 Msa1427200:CDS
AAATGCTGTCGAATATTATT+AGG 0.205490 tig0026171:+34822 Msa1427200:three_prime_UTR
TGATTCGTCCTCAGTTTAAA+TGG 0.238851 tig0026171:+33861 Msa1427200:CDS
CTCTATGTGATATCTGGTTT+TGG 0.246364 tig0026171:+33464 Msa1427200:CDS
GGATTTCTCTATGTGATATC+TGG 0.262897 tig0026171:+33458 Msa1427200:CDS
TCTCAGAGCTCTTCATTAAT+TGG 0.278075 tig0026171:+33573 Msa1427200:CDS
AATGGAATGGAAGATATATT+TGG 0.280921 tig0026171:+34768 Msa1427200:three_prime_UTR
TCTTTCCTATTACTCATTGC+AGG 0.286895 tig0026171:+33974 Msa1427200:CDS
CTTACCCTGCAATGAGTAAT+AGG 0.292148 tig0026171:-33979 None:intergenic
TTCGCTCATCTAGGAGGATT+TGG 0.297054 tig0026171:+33809 Msa1427200:CDS
GGCGCCTTGTCTCTTGTATA+TGG 0.304879 tig0026171:+33136 Msa1427200:CDS
CTTGAACAAGAATTTGGATT+TGG 0.310501 tig0026171:+33222 Msa1427200:CDS
ATCTGAAATCTTTGTTCAAA+AGG 0.315789 tig0026171:+31854 Msa1427200:five_prime_UTR
CATCTAGGAGGATTTGGTTC+TGG 0.319719 tig0026171:+33815 Msa1427200:CDS
AACAAATTCCTAACTTTGTC+AGG 0.325137 tig0026171:+31684 Msa1427200:five_prime_UTR
TCACTCGTGATCGTGATTTC+AGG 0.355861 tig0026171:+31999 Msa1427200:CDS
TTGTGTATATGATTCATTCT+TGG 0.360552 tig0026171:+34586 Msa1427200:three_prime_UTR
TAACTTTGTCAGGGTCTTGT+TGG 0.364641 tig0026171:+31694 Msa1427200:five_prime_UTR
CTTAAAGAAAACCCTCTCTT+TGG 0.366436 tig0026171:+32175 Msa1427200:CDS
TGGCACCACCGTTGAGGTTA+AGG 0.367443 tig0026171:+31928 Msa1427200:CDS
GGCATCTCAGTTGGTGCATC+TGG 0.372637 tig0026171:+33521 Msa1427200:CDS
TTTGGTTCTGGCTTTCTGCT+TGG 0.373387 tig0026171:+33827 Msa1427200:CDS
CTTGTATATGGTTGCATGGT+GGG 0.379600 tig0026171:+33148 Msa1427200:CDS
TGTCCTTTCGCAGTTAGAAT+TGG 0.379685 tig0026171:+33437 Msa1427200:intron
TTGGACGATATATGCCAATA+AGG 0.382911 tig0026171:+33592 Msa1427200:CDS
GGTGCATCTGGTGCATTGTT+TGG 0.382955 tig0026171:+33533 Msa1427200:CDS
AGCCAACAACAGTCTAAATC+TGG 0.385356 tig0026171:+33887 Msa1427200:CDS
ATCCAGATTTAGACTGTTGT+TGG 0.400472 tig0026171:-33889 None:intergenic
AACAAGACCCTGACAAAGTT+AGG 0.404982 tig0026171:-31692 None:intergenic
AATGCTGTCGAATATTATTA+GGG 0.406993 tig0026171:+34823 Msa1427200:three_prime_UTR
GTTGTGTTCCTACCTCAAAA+TGG 0.409054 tig0026171:+34226 Msa1427200:CDS
TCTATGCAGACAACGGAATT+CGG 0.409614 tig0026171:+34406 Msa1427200:intron
GAAATGGGTTTGAATCAGTT+AGG 0.421296 tig0026171:-31768 None:intergenic
ACCGTATCAATATGTGTTGT+GGG 0.439348 tig0026171:+33946 Msa1427200:CDS
GTTGTAATAAATTTAGCTGT+TGG 0.441288 tig0026171:+33764 Msa1427200:CDS
TTGTTCTCAGTCGGCAATGA+TGG 0.441972 tig0026171:+34626 Msa1427200:three_prime_UTR
GTCTGCGTTATTCATACAAA+CGG 0.445629 tig0026171:+33499 Msa1427200:CDS
TCTGAAATCTTTGTTCAAAA+GGG 0.452645 tig0026171:+31855 Msa1427200:five_prime_UTR
GGGTCTTGTTGGATTCTGGC+TGG 0.453364 tig0026171:+31705 Msa1427200:five_prime_UTR
TGTCCTGAGAATGCATTTCA+TGG 0.455723 tig0026171:+32109 Msa1427200:CDS
AGTAATAAACTTATGATGGC+TGG 0.458120 tig0026171:-34661 None:intergenic
GGTGCATTGTTTGGCTTACT+CGG 0.462230 tig0026171:+33542 Msa1427200:CDS
AAAGAGAATCTTCCAAGAAA+AGG 0.470067 tig0026171:-32145 None:intergenic
TTTCAGGCTCTTTAAGCAAT+GGG 0.470163 tig0026171:+32015 Msa1427200:CDS
GTTGACAATTTCGCTCATCT+AGG 0.472592 tig0026171:+33800 Msa1427200:CDS
ACACATGCAAAATTTCTTGA+AGG 0.474975 tig0026171:+34547 Msa1427200:three_prime_UTR
GTCTCTTGTATATGGTTGCA+TGG 0.482616 tig0026171:+33144 Msa1427200:CDS
TAATAGTAATAAACTTATGA+TGG 0.486847 tig0026171:-34665 None:intergenic
TACCGTATCAATATGTGTTG+TGG 0.492632 tig0026171:+33945 Msa1427200:CDS
ATATTATTAGGGATATGTTA+AGG 0.495652 tig0026171:+34834 Msa1427200:three_prime_UTR
TCTTTAAGCAATGGGTTCCA+TGG 0.504864 tig0026171:+32023 Msa1427200:CDS
TACCTCAAAATGGAGTTGTC+AGG 0.507679 tig0026171:+34236 Msa1427200:CDS
GGGATGGTTCTACTCTTTCG+AGG 0.511587 tig0026171:+34162 Msa1427200:CDS
ATTTCAGGCTCTTTAAGCAA+TGG 0.516293 tig0026171:+32014 Msa1427200:CDS
CATTGTTTGGCTTACTCGGA+GGG 0.524954 tig0026171:+33546 Msa1427200:CDS
ACGTTGGCAAACACAAAAGT+TGG 0.526318 tig0026171:-32052 None:intergenic
CTTTGTTCGCAACTTTGCCA+TGG 0.528366 tig0026171:+34514 Msa1427200:CDS
TTCAAAATCATCTATAATCA+CGG 0.533216 tig0026171:+31788 Msa1427200:five_prime_UTR
CTTTCCTATTACTCATTGCA+GGG 0.535119 tig0026171:+33975 Msa1427200:CDS
GTACCATGAAATGCATTCTC+AGG 0.536653 tig0026171:-32112 None:intergenic
TCAACATGTTGGCAAGTACA+TGG 0.537008 tig0026171:-33176 None:intergenic
ACCCACAACACATATTGATA+CGG 0.539971 tig0026171:-33947 None:intergenic
AAATCACGATCACGAGTGAC+GGG 0.541550 tig0026171:-31995 None:intergenic
TGACAGATTCATTACTGGGA+TGG 0.543513 tig0026171:+34146 Msa1427200:intron
TAAACTGAGGACGAATCAAA+AGG 0.544513 tig0026171:-33856 None:intergenic
TGCTCTAGAAGTAGATAAAG+TGG 0.545530 tig0026171:+33095 Msa1427200:CDS
AGAAATTCGTTGTTCTCAGT+CGG 0.545619 tig0026171:+34617 Msa1427200:three_prime_UTR
CACATGCAAAATTTCTTGAA+GGG 0.545781 tig0026171:+34548 Msa1427200:three_prime_UTR
AAAACTCACGTAAAGGAAGA+AGG 0.547703 tig0026171:-32199 None:intergenic
GACAATTTCGCTCATCTAGG+AGG 0.549429 tig0026171:+33803 Msa1427200:CDS
TCTGCGTTATTCATACAAAC+GGG 0.553724 tig0026171:+33500 Msa1427200:CDS
AAGAGAGCAAAGGAATGGAA+TGG 0.554489 tig0026171:+34755 Msa1427200:three_prime_UTR
ACAAAAGTTGGAACAAGCCA+TGG 0.556908 tig0026171:-32040 None:intergenic
ATACAAACGGGCATCTCAGT+TGG 0.569101 tig0026171:+33512 Msa1427200:CDS
GAAATCACGATCACGAGTGA+CGG 0.572889 tig0026171:-31996 None:intergenic
ACGACGAAGACGGAGACCCA+CGG 0.573842 tig0026171:-31961 None:intergenic
ATCAAAAGAGAGCAAAGGAA+TGG 0.574326 tig0026171:+34750 Msa1427200:three_prime_UTR
TCAACGGTGGTGCCACCATG+TGG 0.575383 tig0026171:-31920 None:intergenic
CATGTGTATCTATCTATCCA+TGG 0.577916 tig0026171:-34531 None:intergenic
AAATCATAATCATGAGTGGA+GGG 0.582372 tig0026171:+31891 Msa1427200:exon
TTGTATATGGTTGCATGGTG+GGG 0.585338 tig0026171:+33149 Msa1427200:CDS
AGGAAGAAGGACCAAAGAGA+GGG 0.589526 tig0026171:-32186 None:intergenic
AAACAATTCTCCACAGACAA+AGG 0.590975 tig0026171:+31735 Msa1427200:five_prime_UTR
ACAAATTCCTAACTTTGTCA+GGG 0.594817 tig0026171:+31685 Msa1427200:five_prime_UTR
TGGTTCATGAACACGAAGGT+TGG 0.597343 tig0026171:+33115 Msa1427200:CDS
AACAATGAAAATAATAACGT+TGG 0.597447 tig0026171:-32068 None:intergenic
GGAACAAAGCATTTATTGTG+AGG 0.597670 tig0026171:+34257 Msa1427200:CDS
TTAAGGTTCATCCTCGCCGT+GGG 0.597978 tig0026171:+31945 Msa1427200:CDS
TCTTGTATATGGTTGCATGG+TGG 0.604832 tig0026171:+33147 Msa1427200:CDS
GCATTGTTTGGCTTACTCGG+AGG 0.606501 tig0026171:+33545 Msa1427200:CDS
GTTAAGGTTCATCCTCGCCG+TGG 0.606777 tig0026171:+31944 Msa1427200:CDS
CGAAATTGTCAACATGTGGA+AGG 0.611940 tig0026171:-33790 None:intergenic
TGAGCGAAATTGTCAACATG+TGG 0.615330 tig0026171:-33794 None:intergenic
GGATTCGACGACGACGAAGA+CGG 0.615599 tig0026171:-31971 None:intergenic
CAACGGTGGTGCCACCATGT+GGG 0.618108 tig0026171:-31919 None:intergenic
AACATCACATGCATGAGCAA+TGG 0.619993 tig0026171:+34439 Msa1427200:CDS
ACATGGTGGCACCACCGTTG+AGG 0.621441 tig0026171:+31922 Msa1427200:CDS
AAGGAAGAAGGACCAAAGAG+AGG 0.633246 tig0026171:-32187 None:intergenic
TGGCTTATCCATTTAAACTG+AGG 0.633333 tig0026171:-33869 None:intergenic
AAAATCATAATCATGAGTGG+AGG 0.633390 tig0026171:+31890 Msa1427200:exon
CTATTATCAAAAGAGAGCAA+AGG 0.634615 tig0026171:+34745 Msa1427200:three_prime_UTR
TCACGATCACGAGTGACGGG+AGG 0.634822 tig0026171:-31992 None:intergenic
ACTTGAATGAACGTTGCTCG+TGG 0.663668 tig0026171:+34190 Msa1427200:CDS
AGGATGAACCTTAACCTCAA+CGG 0.671763 tig0026171:-31936 None:intergenic
TCATAATCATGAGTGGAGGG+AGG 0.674267 tig0026171:+31894 Msa1427200:exon
GAAGACGGAGACCCACGGCG+AGG 0.680052 tig0026171:-31956 None:intergenic
GAAGAGCTAGTATTCGACAG+AGG 0.682346 tig0026171:-34478 None:intergenic
AGTGGAGGGAGGAACCCACA+TGG 0.690830 tig0026171:+31905 Msa1427200:CDS
GCAACCATATACAAGAGACA+AGG 0.709780 tig0026171:-33140 None:intergenic
AAAATCATCTATAATCACGG+AGG 0.711965 tig0026171:+31791 Msa1427200:five_prime_UTR
ATGAACCTTAACCTCAACGG+TGG 0.726735 tig0026171:-31933 None:intergenic
GGAGGGAGGAACCCACATGG+TGG 0.736064 tig0026171:+31908 Msa1427200:CDS
AAAGTGGTTCATGAACACGA+AGG 0.793505 tig0026171:+33111 Msa1427200:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TGATTATGATTTTTTTTTTT+TGG - tig0026171:31883-31902 None:intergenic 10.0%
!!! ATTATAGATGATTTTGAAAT+GGG - tig0026171:31786-31805 None:intergenic 15.0%
!! AATGATATAAATACAGATAA+TGG - tig0026171:33315-33334 None:intergenic 15.0%
!! AAGACAATAAATTATTTATC+AGG - tig0026171:33656-33675 None:intergenic 15.0%
!! TAAATAATTTATTGTCTTTG+CGG + tig0026171:33658-33677 Msa1427200:intron 15.0%
!! ATATTACCTTTAATATTCTT+AGG + tig0026171:34030-34049 Msa1427200:intron 15.0%
!!! GTTTTTTCTTTTATCTAAAT+TGG + tig0026171:34369-34388 Msa1427200:intron 15.0%
!! TAATAGTAATAAACTTATGA+TGG - tig0026171:34668-34687 None:intergenic 15.0%
!!! GATTATAGATGATTTTGAAA+TGG - tig0026171:31787-31806 None:intergenic 20.0%
!! TTCAAAATCATCTATAATCA+CGG + tig0026171:31788-31807 Msa1427200:five_prime_UTR 20.0%
!! AAAAAAATCATAATCATGAG+TGG + tig0026171:31887-31906 Msa1427200:exon 20.0%
!! AACAATGAAAATAATAACGT+TGG - tig0026171:32071-32090 None:intergenic 20.0%
!! TACATTAATCAAGTTATGAT+TGG + tig0026171:32302-32321 Msa1427200:intron 20.0%
!! ATGAACATGTGTTTATAAAT+GGG + tig0026171:32645-32664 Msa1427200:intron 20.0%
!!! TTGTTTTTACATAAATGTTC+TGG + tig0026171:33333-33352 Msa1427200:intron 20.0%
!!! AGTAGTATTTAATCTAAAGT+TGG + tig0026171:34116-34135 Msa1427200:intron 20.0%
!!! AATTTTTTTTCCTTTGTCTG+TGG - tig0026171:31748-31767 None:intergenic 25.0%
!! ATCTGAAATCTTTGTTCAAA+AGG + tig0026171:31854-31873 Msa1427200:five_prime_UTR 25.0%
!! TCTGAAATCTTTGTTCAAAA+GGG + tig0026171:31855-31874 Msa1427200:five_prime_UTR 25.0%
! TTAATCAAGTTATGATTGGT+TGG + tig0026171:32306-32325 Msa1427200:intron 25.0%
! CATGAACATGTGTTTATAAA+TGG + tig0026171:32644-32663 Msa1427200:intron 25.0%
! TGAACATGTGTTTATAAATG+GGG + tig0026171:32646-32665 Msa1427200:intron 25.0%
! TTCATAGATTACATTCTCTA+TGG + tig0026171:32887-32906 Msa1427200:intron 25.0%
! GCTATTGCAAATACATAATT+TGG - tig0026171:32966-32985 None:intergenic 25.0%
! TATGTATTTGCAATAGCTAA+TGG + tig0026171:32969-32988 Msa1427200:intron 25.0%
!! ACAGTACCAATCTTAATTTT+AGG + tig0026171:32992-33011 Msa1427200:intron 25.0%
! TATCTGCCTAAAATTAAGAT+TGG - tig0026171:33001-33020 None:intergenic 25.0%
!! ATGTTGAGTCTTCTTTTTAT+TGG + tig0026171:33192-33211 Msa1427200:CDS 25.0%
!! GTCTTCTTTTTATTGGAATT+CGG + tig0026171:33199-33218 Msa1427200:CDS 25.0%
!!! TTTTAGTTCATTCACCTTAT+TGG - tig0026171:33609-33628 None:intergenic 25.0%
! CAAAATGGAAAGAAATAGAA+TGG - tig0026171:33696-33715 None:intergenic 25.0%
! GTTGTAATAAATTTAGCTGT+TGG + tig0026171:33764-33783 Msa1427200:CDS 25.0%
!!! AATTTTGACAGATTCATTAC+TGG + tig0026171:34141-34160 Msa1427200:intron 25.0%
!!! ATTTTGACAGATTCATTACT+GGG + tig0026171:34142-34161 Msa1427200:intron 25.0%
! GAACTAGAAAATAGAATTGA+TGG - tig0026171:34308-34327 None:intergenic 25.0%
! TTGTGTATATGATTCATTCT+TGG + tig0026171:34586-34605 Msa1427200:three_prime_UTR 25.0%
! AATGGAATGGAAGATATATT+TGG + tig0026171:34768-34787 Msa1427200:three_prime_UTR 25.0%
! AAATGCTGTCGAATATTATT+AGG + tig0026171:34822-34841 Msa1427200:three_prime_UTR 25.0%
! AATGCTGTCGAATATTATTA+GGG + tig0026171:34823-34842 Msa1427200:three_prime_UTR 25.0%
AACAAATTCCTAACTTTGTC+AGG + tig0026171:31684-31703 Msa1427200:five_prime_UTR 30.0%
ACAAATTCCTAACTTTGTCA+GGG + tig0026171:31685-31704 Msa1427200:five_prime_UTR 30.0%
AAAATCATCTATAATCACGG+AGG + tig0026171:31791-31810 Msa1427200:five_prime_UTR 30.0%
AAAATCATAATCATGAGTGG+AGG + tig0026171:31890-31909 Msa1427200:exon 30.0%
AAATCATAATCATGAGTGGA+GGG + tig0026171:31891-31910 Msa1427200:exon 30.0%
AAAGAGAATCTTCCAAGAAA+AGG - tig0026171:32148-32167 None:intergenic 30.0%
GAAAAAGAAAACTCACGTAA+AGG - tig0026171:32209-32228 None:intergenic 30.0%
TGAGAATGAGTTTATTAGTG+TGG + tig0026171:32427-32446 Msa1427200:intron 30.0%
! ACACTTTAGATGTCTAAGAT+TGG + tig0026171:32580-32599 Msa1427200:intron 30.0%
! CACTTTAGATGTCTAAGATT+GGG + tig0026171:32581-32600 Msa1427200:intron 30.0%
! ACTTTAGATGTCTAAGATTG+GGG + tig0026171:32582-32601 Msa1427200:intron 30.0%
GAACATGTGTTTATAAATGG+GGG + tig0026171:32647-32666 Msa1427200:intron 30.0%
AACATGTGTTTATAAATGGG+GGG + tig0026171:32648-32667 Msa1427200:intron 30.0%
!! AGTTAAATTGATTCGAGCTA+AGG + tig0026171:32677-32696 Msa1427200:intron 30.0%
!! GTTAAATTGATTCGAGCTAA+GGG + tig0026171:32678-32697 Msa1427200:intron 30.0%
TTAATATTTACTCCTTCGTC+CGG - tig0026171:32733-32752 None:intergenic 30.0%
AACAAAAACGTGTGTTTGTA+AGG + tig0026171:32787-32806 Msa1427200:intron 30.0%
AAAAACCTAATAGATGTGTG+AGG + tig0026171:32828-32847 Msa1427200:intron 30.0%
AAAACCTAATAGATGTGTGA+GGG + tig0026171:32829-32848 Msa1427200:intron 30.0%
GAATGTAATCTATGAATCAC+CGG - tig0026171:32883-32902 None:intergenic 30.0%
! TTTTAGGCAGATATATCTCT+TGG + tig0026171:33008-33027 Msa1427200:intron 30.0%
! ATTTTCAGATTACAGGAGAT+GGG + tig0026171:33072-33091 Msa1427200:intron 30.0%
AAAAAGAAGACTCAACATGT+TGG - tig0026171:33190-33209 None:intergenic 30.0%
CTTGAACAAGAATTTGGATT+TGG + tig0026171:33222-33241 Msa1427200:CDS 30.0%
! ACAAGAATTTGGATTTGGTA+TGG + tig0026171:33227-33246 Msa1427200:intron 30.0%
!! TACAGATAATGGAATACTGT+TGG - tig0026171:33304-33323 None:intergenic 30.0%
GGAAAGAAATAGAATGGTTT+AGG - tig0026171:33690-33709 None:intergenic 30.0%
CAAAACATCATGAGACAAAA+TGG - tig0026171:33711-33730 None:intergenic 30.0%
CCAAGTCCTAAGAATATTAA+AGG - tig0026171:34039-34058 None:intergenic 30.0%
CCTTTAATATTCTTAGGACT+TGG + tig0026171:34036-34055 Msa1427200:intron 30.0%
ACAATATTCTATGCAGACAA+CGG + tig0026171:34399-34418 Msa1427200:intron 30.0%
ACACATGCAAAATTTCTTGA+AGG + tig0026171:34547-34566 Msa1427200:three_prime_UTR 30.0%
CACATGCAAAATTTCTTGAA+GGG + tig0026171:34548-34567 Msa1427200:three_prime_UTR 30.0%
AGTAATAAACTTATGATGGC+TGG - tig0026171:34664-34683 None:intergenic 30.0%
CTATTATCAAAAGAGAGCAA+AGG + tig0026171:34745-34764 Msa1427200:three_prime_UTR 30.0%
AAACAATTCTCCACAGACAA+AGG + tig0026171:31735-31754 Msa1427200:five_prime_UTR 35.0%
! GAAATGGGTTTGAATCAGTT+AGG - tig0026171:31771-31790 None:intergenic 35.0%
ATTTCAGGCTCTTTAAGCAA+TGG + tig0026171:32014-32033 Msa1427200:CDS 35.0%
TTTCAGGCTCTTTAAGCAAT+GGG + tig0026171:32015-32034 Msa1427200:CDS 35.0%
! AAGAGAGGGTTTTCTTTAAG+TGG - tig0026171:32175-32194 None:intergenic 35.0%
CTTAAAGAAAACCCTCTCTT+TGG + tig0026171:32175-32194 Msa1427200:CDS 35.0%
AAAACTCACGTAAAGGAAGA+AGG - tig0026171:32202-32221 None:intergenic 35.0%
! CTTTAGATGTCTAAGATTGG+GGG + tig0026171:32583-32602 Msa1427200:intron 35.0%
TAATATTTACTCCTTCGTCC+GGG - tig0026171:32732-32751 None:intergenic 35.0%
! TACTCGCATTTTCAGATTAC+AGG + tig0026171:33065-33084 Msa1427200:intron 35.0%
! CATTTTCAGATTACAGGAGA+TGG + tig0026171:33071-33090 Msa1427200:intron 35.0%
!! TGCTCTAGAAGTAGATAAAG+TGG + tig0026171:33095-33114 Msa1427200:CDS 35.0%
! ATTCGGCTTGAACAAGAATT+TGG + tig0026171:33216-33235 Msa1427200:CDS 35.0%
! ATTTGGATTTGGTATGGTTC+TGG + tig0026171:33233-33252 Msa1427200:intron 35.0%
CGATATACTTGAACAATGCA+AGG - tig0026171:33266-33285 None:intergenic 35.0%
!! GATAATGGAATACTGTTGGT+CGG - tig0026171:33300-33319 None:intergenic 35.0%
AATCCAATTCTAACTGCGAA+AGG - tig0026171:33443-33462 None:intergenic 35.0%
GGATTTCTCTATGTGATATC+TGG + tig0026171:33458-33477 Msa1427200:CDS 35.0%
!! CTCTATGTGATATCTGGTTT+TGG + tig0026171:33464-33483 Msa1427200:CDS 35.0%
!!! TATGTGATATCTGGTTTTGG+AGG + tig0026171:33467-33486 Msa1427200:CDS 35.0%
!!! ATGTGATATCTGGTTTTGGA+GGG + tig0026171:33468-33487 Msa1427200:CDS 35.0%
GTCTGCGTTATTCATACAAA+CGG + tig0026171:33499-33518 Msa1427200:CDS 35.0%
TCTGCGTTATTCATACAAAC+GGG + tig0026171:33500-33519 Msa1427200:CDS 35.0%
TCTCAGAGCTCTTCATTAAT+TGG + tig0026171:33573-33592 Msa1427200:CDS 35.0%
TTGGACGATATATGCCAATA+AGG + tig0026171:33592-33611 Msa1427200:CDS 35.0%
TAAACTGAGGACGAATCAAA+AGG - tig0026171:33859-33878 None:intergenic 35.0%
TGATTCGTCCTCAGTTTAAA+TGG + tig0026171:33861-33880 Msa1427200:CDS 35.0%
TGGCTTATCCATTTAAACTG+AGG - tig0026171:33872-33891 None:intergenic 35.0%
ATCCAGATTTAGACTGTTGT+TGG - tig0026171:33892-33911 None:intergenic 35.0%
TACCGTATCAATATGTGTTG+TGG + tig0026171:33945-33964 Msa1427200:CDS 35.0%
ACCGTATCAATATGTGTTGT+GGG + tig0026171:33946-33965 Msa1427200:CDS 35.0%
ACCCACAACACATATTGATA+CGG - tig0026171:33950-33969 None:intergenic 35.0%
TCTTTCCTATTACTCATTGC+AGG + tig0026171:33974-33993 Msa1427200:CDS 35.0%
CTTTCCTATTACTCATTGCA+GGG + tig0026171:33975-33994 Msa1427200:CDS 35.0%
! GGAACAAAGCATTTATTGTG+AGG + tig0026171:34257-34276 Msa1427200:CDS 35.0%
CATGTGTATCTATCTATCCA+TGG - tig0026171:34534-34553 None:intergenic 35.0%
AGAAATTCGTTGTTCTCAGT+CGG + tig0026171:34617-34636 Msa1427200:three_prime_UTR 35.0%
ATCAAAAGAGAGCAAAGGAA+TGG + tig0026171:34750-34769 Msa1427200:three_prime_UTR 35.0%
AACAAGACCCTGACAAAGTT+AGG - tig0026171:31695-31714 None:intergenic 40.0%
! TAACTTTGTCAGGGTCTTGT+TGG + tig0026171:31694-31713 Msa1427200:five_prime_UTR 40.0%
AGGATGAACCTTAACCTCAA+CGG - tig0026171:31939-31958 None:intergenic 40.0%
! TCTTTAAGCAATGGGTTCCA+TGG + tig0026171:32023-32042 Msa1427200:CDS 40.0%
ACAAAAGTTGGAACAAGCCA+TGG - tig0026171:32043-32062 None:intergenic 40.0%
ACGTTGGCAAACACAAAAGT+TGG - tig0026171:32055-32074 None:intergenic 40.0%
TGTCCTGAGAATGCATTTCA+TGG + tig0026171:32109-32128 Msa1427200:CDS 40.0%
GTACCATGAAATGCATTCTC+AGG - tig0026171:32115-32134 None:intergenic 40.0%
!! ACTTGTGTTGCTCCTTTTCT+TGG + tig0026171:32133-32152 Msa1427200:CDS 40.0%
!! GCCAGTTTTGTGAATGAGTT+AGG + tig0026171:32468-32487 Msa1427200:intron 40.0%
GCCTAACTCATTCACAAAAC+TGG - tig0026171:32472-32491 None:intergenic 40.0%
! ATGTCTAAGATTGGGGGTAA+GGG + tig0026171:32589-32608 Msa1427200:intron 40.0%
TGTGTTTATAAATGGGGGGT+TGG + tig0026171:32652-32671 Msa1427200:intron 40.0%
GTGTTTATAAATGGGGGGTT+GGG + tig0026171:32653-32672 Msa1427200:intron 40.0%
GTGTGTTTGTAAGGATGCAT+AGG + tig0026171:32796-32815 Msa1427200:intron 40.0%
ACAACCCTCACACATCTATT+AGG - tig0026171:32836-32855 None:intergenic 40.0%
AAAGTGGTTCATGAACACGA+AGG + tig0026171:33111-33130 Msa1427200:CDS 40.0%
GCAACCATATACAAGAGACA+AGG - tig0026171:33143-33162 None:intergenic 40.0%
GTCTCTTGTATATGGTTGCA+TGG + tig0026171:33144-33163 Msa1427200:CDS 40.0%
TCTTGTATATGGTTGCATGG+TGG + tig0026171:33147-33166 Msa1427200:CDS 40.0%
CTTGTATATGGTTGCATGGT+GGG + tig0026171:33148-33167 Msa1427200:CDS 40.0%
TTGTATATGGTTGCATGGTG+GGG + tig0026171:33149-33168 Msa1427200:CDS 40.0%
TCAACATGTTGGCAAGTACA+TGG - tig0026171:33179-33198 None:intergenic 40.0%
TAACTGCGAAAGGACAAGAA+AGG - tig0026171:33433-33452 None:intergenic 40.0%
TGTCCTTTCGCAGTTAGAAT+TGG + tig0026171:33437-33456 Msa1427200:intron 40.0%
! GTCTCATGATGTTTTGCAGA+TGG + tig0026171:33715-33734 Msa1427200:intron 40.0%
CGAAATTGTCAACATGTGGA+AGG - tig0026171:33793-33812 None:intergenic 40.0%
TGAGCGAAATTGTCAACATG+TGG - tig0026171:33797-33816 None:intergenic 40.0%
GTTGACAATTTCGCTCATCT+AGG + tig0026171:33800-33819 Msa1427200:CDS 40.0%
AGCCAACAACAGTCTAAATC+TGG + tig0026171:33887-33906 Msa1427200:CDS 40.0%
CTTACCCTGCAATGAGTAAT+AGG - tig0026171:33982-34001 None:intergenic 40.0%
TGACAGATTCATTACTGGGA+TGG + tig0026171:34146-34165 Msa1427200:intron 40.0%
GTTGTGTTCCTACCTCAAAA+TGG + tig0026171:34226-34245 Msa1427200:CDS 40.0%
!!! TGACAACTCCATTTTGAGGT+AGG - tig0026171:34237-34256 None:intergenic 40.0%
TACCTCAAAATGGAGTTGTC+AGG + tig0026171:34236-34255 Msa1427200:CDS 40.0%
! TTCCTGACAACTCCATTTTG+AGG - tig0026171:34241-34260 None:intergenic 40.0%
TCTATGCAGACAACGGAATT+CGG + tig0026171:34406-34425 Msa1427200:intron 40.0%
AACATCACATGCATGAGCAA+TGG + tig0026171:34439-34458 Msa1427200:CDS 40.0%
AAGAGAGCAAAGGAATGGAA+TGG + tig0026171:34755-34774 Msa1427200:three_prime_UTR 40.0%
TCATAATCATGAGTGGAGGG+AGG + tig0026171:31894-31913 Msa1427200:exon 45.0%
ATGAACCTTAACCTCAACGG+TGG - tig0026171:31936-31955 None:intergenic 45.0%
AAATCACGATCACGAGTGAC+GGG - tig0026171:31998-32017 None:intergenic 45.0%
GAAATCACGATCACGAGTGA+CGG - tig0026171:31999-32018 None:intergenic 45.0%
TCACTCGTGATCGTGATTTC+AGG + tig0026171:31999-32018 Msa1427200:CDS 45.0%
AGGAAGAAGGACCAAAGAGA+GGG - tig0026171:32189-32208 None:intergenic 45.0%
AAGGAAGAAGGACCAAAGAG+AGG - tig0026171:32190-32209 None:intergenic 45.0%
! CATCTAAAGTGTGACTCGTG+TGG - tig0026171:32572-32591 None:intergenic 45.0%
! GATGTCTAAGATTGGGGGTA+AGG + tig0026171:32588-32607 Msa1427200:intron 45.0%
CGAGCTAAGGGATAAGAAGT+TGG + tig0026171:32690-32709 Msa1427200:intron 45.0%
GCTAAGGGATAAGAAGTTGG+AGG + tig0026171:32693-32712 Msa1427200:intron 45.0%
!! GGAGGTTCTAAGTTCAAACC+CGG + tig0026171:32711-32730 Msa1427200:intron 45.0%
TCTTGTGTCTGTGTCTCTAC+CGG + tig0026171:32861-32880 Msa1427200:intron 45.0%
TGGTTCATGAACACGAAGGT+TGG + tig0026171:33115-33134 Msa1427200:CDS 45.0%
ATACAAACGGGCATCTCAGT+TGG + tig0026171:33512-33531 Msa1427200:CDS 45.0%
! GGTGCATTGTTTGGCTTACT+CGG + tig0026171:33542-33561 Msa1427200:CDS 45.0%
! CATTGTTTGGCTTACTCGGA+GGG + tig0026171:33546-33565 Msa1427200:CDS 45.0%
GACAATTTCGCTCATCTAGG+AGG + tig0026171:33803-33822 Msa1427200:CDS 45.0%
TTCGCTCATCTAGGAGGATT+TGG + tig0026171:33809-33828 Msa1427200:CDS 45.0%
! CATCTAGGAGGATTTGGTTC+TGG + tig0026171:33815-33834 Msa1427200:CDS 45.0%
!! TTTGGTTCTGGCTTTCTGCT+TGG + tig0026171:33827-33846 Msa1427200:CDS 45.0%
ACTTGAATGAACGTTGCTCG+TGG + tig0026171:34190-34209 Msa1427200:CDS 45.0%
GAAGAGCTAGTATTCGACAG+AGG - tig0026171:34481-34500 None:intergenic 45.0%
CTTTGTTCGCAACTTTGCCA+TGG + tig0026171:34514-34533 Msa1427200:CDS 45.0%
TTGTTCTCAGTCGGCAATGA+TGG + tig0026171:34626-34645 Msa1427200:three_prime_UTR 45.0%
!! GTCAGGGTCTTGTTGGATTC+TGG + tig0026171:31701-31720 Msa1427200:five_prime_UTR 50.0%
TTAAGGTTCATCCTCGCCGT+GGG + tig0026171:31945-31964 Msa1427200:CDS 50.0%
! GATAATGGTGGCCAGATAGC+AGG - tig0026171:32546-32565 None:intergenic 50.0%
GCTATCTGGCCACCATTATC+AGG + tig0026171:32546-32565 Msa1427200:intron 50.0%
TGACTCGTGTGGCCTGATAA+TGG - tig0026171:32561-32580 None:intergenic 50.0%
CTAAGTTCAAACCCGGACGA+AGG + tig0026171:32718-32737 Msa1427200:intron 50.0%
GGCGCCTTGTCTCTTGTATA+TGG + tig0026171:33136-33155 Msa1427200:CDS 50.0%
GGTGCATCTGGTGCATTGTT+TGG + tig0026171:33533-33552 Msa1427200:CDS 50.0%
! GCATTGTTTGGCTTACTCGG+AGG + tig0026171:33545-33564 Msa1427200:CDS 50.0%
! GGGATGGTTCTACTCTTTCG+AGG + tig0026171:34162-34181 Msa1427200:CDS 50.0%
!! GGGTCTTGTTGGATTCTGGC+TGG + tig0026171:31705-31724 Msa1427200:five_prime_UTR 55.0%
TGGCACCACCGTTGAGGTTA+AGG + tig0026171:31928-31947 Msa1427200:CDS 55.0%
GTTAAGGTTCATCCTCGCCG+TGG + tig0026171:31944-31963 Msa1427200:CDS 55.0%
GGATTCGACGACGACGAAGA+CGG - tig0026171:31974-31993 None:intergenic 55.0%
GCAGGCGGTTCAATGGATCT+TGG - tig0026171:32528-32547 None:intergenic 55.0%
CCAGATAGCAGGCGGTTCAA+TGG - tig0026171:32535-32554 None:intergenic 55.0%
CCATTGAACCGCCTGCTATC+TGG + tig0026171:32532-32551 Msa1427200:intron 55.0%
AATGGTGGCCAGATAGCAGG+CGG - tig0026171:32543-32562 None:intergenic 55.0%
!! CTCGTGTGGCCTGATAATGG+TGG - tig0026171:32558-32577 None:intergenic 55.0%
! GGCATCTCAGTTGGTGCATC+TGG + tig0026171:33521-33540 Msa1427200:CDS 55.0%
AGTGGAGGGAGGAACCCACA+TGG + tig0026171:31905-31924 Msa1427200:CDS 60.0%
!! CAACGGTGGTGCCACCATGT+GGG - tig0026171:31922-31941 None:intergenic 60.0%
!! TCAACGGTGGTGCCACCATG+TGG - tig0026171:31923-31942 None:intergenic 60.0%
ACATGGTGGCACCACCGTTG+AGG + tig0026171:31922-31941 Msa1427200:CDS 60.0%
ACGACGAAGACGGAGACCCA+CGG - tig0026171:31964-31983 None:intergenic 60.0%
! TCACGATCACGAGTGACGGG+AGG - tig0026171:31995-32014 None:intergenic 60.0%
GGAGGGAGGAACCCACATGG+TGG + tig0026171:31908-31927 Msa1427200:CDS 65.0%
GAAGACGGAGACCCACGGCG+AGG - tig0026171:31959-31978 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
tig0026171 gene 31644 34856 31644 ID=Msa1427200;Name=Msa1427200
tig0026171 mRNA 31644 34856 31644 ID=Msa1427200-mRNA-1;Parent=Msa1427200;Name=Msa1427200-mRNA-1;_AED=0.11;_eAED=0.11;_QI=258|1|1|1|1|1|6|316|384
tig0026171 exon 31644 32212 31644 ID=Msa1427200-mRNA-1:exon:5299;Parent=Msa1427200-mRNA-1
tig0026171 exon 33080 33243 33080 ID=Msa1427200-mRNA-1:exon:5300;Parent=Msa1427200-mRNA-1
tig0026171 exon 33450 33613 33450 ID=Msa1427200-mRNA-1:exon:5301;Parent=Msa1427200-mRNA-1
tig0026171 exon 33734 33996 33734 ID=Msa1427200-mRNA-1:exon:5302;Parent=Msa1427200-mRNA-1
tig0026171 exon 34152 34278 34152 ID=Msa1427200-mRNA-1:exon:5303;Parent=Msa1427200-mRNA-1
tig0026171 exon 34415 34856 34415 ID=Msa1427200-mRNA-1:exon:5304;Parent=Msa1427200-mRNA-1
tig0026171 five_prime_UTR 31644 31901 31644 ID=Msa1427200-mRNA-1:five_prime_utr;Parent=Msa1427200-mRNA-1
tig0026171 CDS 31902 32212 31902 ID=Msa1427200-mRNA-1:cds;Parent=Msa1427200-mRNA-1
tig0026171 CDS 33080 33243 33080 ID=Msa1427200-mRNA-1:cds;Parent=Msa1427200-mRNA-1
tig0026171 CDS 33450 33613 33450 ID=Msa1427200-mRNA-1:cds;Parent=Msa1427200-mRNA-1
tig0026171 CDS 33734 33996 33734 ID=Msa1427200-mRNA-1:cds;Parent=Msa1427200-mRNA-1
tig0026171 CDS 34152 34278 34152 ID=Msa1427200-mRNA-1:cds;Parent=Msa1427200-mRNA-1
tig0026171 CDS 34415 34540 34415 ID=Msa1427200-mRNA-1:cds;Parent=Msa1427200-mRNA-1
tig0026171 three_prime_UTR 34541 34856 34541 ID=Msa1427200-mRNA-1:three_prime_utr;Parent=Msa1427200-mRNA-1
Gene Sequence

>Msa1427200

ATGAGTGGAGGGAGGAACCCACATGGTGGCACCACCGTTGAGGTTAAGGTTCATCCTCGCCGTGGGTCTCCGTCTTCGTCGTCGTCGAATCCTCCCGTCACTCGTGATCGTGATTTCAGGCTCTTTAAGCAATGGGTTCCATGGCTTGTTCCAACTTTTGTGTTTGCCAACGTTATTATTTTCATTGTTACAATGTATGTTAATGATTGTCCTGAGAATGCATTTCATGGTACTTGTGTTGCTCCTTTTCTTGGAAGATTCTCTTTTCAACCACTTAAAGAAAACCCTCTCTTTGGTCCTTCTTCCTTTACATTACAGGAGATGGGTGCTCTAGAAGTAGATAAAGTGGTTCATGAACACGAAGGTTGGCGCCTTGTCTCTTGTATATGGTTGCATGGTGGGGCTATCCATGTACTTGCCAACATGTTGAGTCTTCTTTTTATTGGAATTCGGCTTGAACAAGAATTTGGATTTGTTAGAATTGGATTTCTCTATGTGATATCTGGTTTTGGAGGGAGTTTGCTGTCTGCGTTATTCATACAAACGGGCATCTCAGTTGGTGCATCTGGTGCATTGTTTGGCTTACTCGGAGGGATGCTCTCAGAGCTCTTCATTAATTGGACGATATATGCCAATAAGATGGCTGCATTGTTGACTCTTATAGTCATTGTTGTAATAAATTTAGCTGTTGGAGTCCTTCCACATGTTGACAATTTCGCTCATCTAGGAGGATTTGGTTCTGGCTTTCTGCTTGGATTTGTCCTTTTGATTCGTCCTCAGTTTAAATGGATAAGCCAACAACAGTCTAAATCTGGATCTCATGCATTTTCTGTTAAACACAATAAGTACTTACCGTATCAATATGTGTTGTGGGTTTTGTCTTTCCTATTACTCATTGCAGGATTCATTACTGGGATGGTTCTACTCTTTCGAGGTGTTAACTTGAATGAACGTTGCTCGTGGTGTCATTATTTAAGTTGTGTTCCTACCTCAAAATGGAGTTGTCAGGAACAAAGCATTTATTGTGAGACAACGGAATTCGGAAATCAACTTAACATCACATGCATGAGCAATGGTAGAAGTGACATTTATCCTCTGTCGAATACTAGCTCTTCTGATAGACAACAACTTTGTTCGCAACTTTGCCATGGATAG

Protein sequence

>Msa1427200

MSGGRNPHGGTTVEVKVHPRRGSPSSSSSNPPVTRDRDFRLFKQWVPWLVPTFVFANVIIFIVTMYVNDCPENAFHGTCVAPFLGRFSFQPLKENPLFGPSSFTLQEMGALEVDKVVHEHEGWRLVSCIWLHGGAIHVLANMLSLLFIGIRLEQEFGFVRIGFLYVISGFGGSLLSALFIQTGISVGASGALFGLLGGMLSELFINWTIYANKMAALLTLIVIVVINLAVGVLPHVDNFAHLGGFGSGFLLGFVLLIRPQFKWISQQQSKSGSHAFSVKHNKYLPYQYVLWVLSFLLLIAGFITGMVLLFRGVNLNERCSWCHYLSCVPTSKWSCQEQSIYCETTEFGNQLNITCMSNGRSDIYPLSNTSSSDRQQLCSQLCHG*