AlfalfaGEDB | Msa1251930

M. sativa cultivar zhongmu-4 / Msa1251930

KEGG: K20283|K20478
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1251930	XP_013446111.1	92.438	767	57	1	1	767	1	766	0.0	1392

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1251930	sp\|P0CB23\|Y4862_ARATH	46.316	570	290	5	1	569	1	555	1.76e-127	409
Msa1251930	sp\|P0CB23\|Y4862_ARATH	42.523	214	79	2	481	666	634	831	5.82e-29	127

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1251930	A0A072TTF3	92.438	767	57	1	1	767	1	766	0.0	1392

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0005890	Msa1251930	0.810111	1.355712e-50	-8.615850e-47
Msa0018000	Msa1251930	0.807335	5.315519e-50	-8.615850e-47
Msa0021500	Msa1251930	0.822554	2.225766e-53	-8.615850e-47
Msa0024550	Msa1251930	0.810539	1.096245e-50	-8.615850e-47
Msa0027820	Msa1251930	0.811810	5.810931e-51	-8.615850e-47
Msa0043620	Msa1251930	0.807562	4.758040e-50	-8.615850e-47
Msa0094780	Msa1251930	0.826093	3.276779e-54	-8.615850e-47
Msa0120400	Msa1251930	0.813034	3.139277e-51	-8.615850e-47
Msa0136650	Msa1251930	0.800725	1.259490e-48	-8.615850e-47
Msa0164330	Msa1251930	0.801794	7.610488e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1251930	MtrunA17_Chr8g0367551	92.438	767	57	1	1	767	1	766	0.0	1392
Msa1251930	MtrunA17_Chr2g0279621	33.042	687	383	9	5	668	6	638	8.44e-86	291
Msa1251930	MtrunA17_Chr5g0412231	53.814	236	93	2	206	441	95	314	2.11e-62	223
Msa1251930	MtrunA17_Chr5g0412231	52.083	96	42	4	672	766	625	717	3.91e-19	92.4

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1251930	AT4G38062.1	46.316	570	290	5	1	569	1	555	1.79e-128	409
Msa1251930	AT4G38062.1	42.523	214	79	2	481	666	634	831	5.92e-30	127

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Find 109 sgRNAs with CRISPR-Local

Find 248 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGAGCTAAGTGAAAGAGA+TGG	0.642231	8_2:+48512767	Msa1251930:CDS
AAATGCTGGAGGAATCGATT+AGG	0.491654	8_2:+48513881	Msa1251930:CDS
AACAAAACTGTCCTTAGAAA+GGG	0.503674	8_2:+48514302	Msa1251930:CDS
AACTGCAGAACGAACTTGAT+AGG	0.483851	8_2:+48513851	Msa1251930:CDS
AACTTTCTTTATCCTACTAG+TGG	0.522244	8_2:-48514511	None:intergenic
AAGCCTGAAAAGTTGTCTAT+CGG	0.554852	8_2:+48512697	Msa1251930:CDS
AAGTGGGAAGATGAGAAAAG+AGG	0.542516	8_2:+48512593	Msa1251930:CDS
AAGTTGAAGTTTCAGAATAT+AGG	0.431024	8_2:+48513071	Msa1251930:CDS
AATTTGCGAAAGAAGTGAAA+TGG	0.449523	8_2:+48514014	Msa1251930:CDS
AATTTGTACGAAAATCTCAA+AGG	0.621772	8_2:+48512485	Msa1251930:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGTTGGAAGATCAATTAAAG+TGG	+	chr8_2:48512822-48512841	Msa1251930:CDS	30.0%
AGATCAATTAAAGTGGAAGA+AGG	+	chr8_2:48512829-48512848	Msa1251930:CDS	30.0%
GATGCATATGAGAAACTTAA+AGG	+	chr8_2:48512872-48512891	Msa1251930:CDS	30.0%
CTTTCTTGCTAGACTTAAAT+TGG	-	chr8_2:48512898-48512917	None:intergenic	30.0%
AGCAAGAAAATCAAGAGTTA+AGG	+	chr8_2:48513251-48513270	Msa1251930:CDS	30.0%
TACTCAACAAAGAGAAAGAA+GGG	+	chr8_2:48513644-48513663	Msa1251930:CDS	30.0%
AATTTGCGAAAGAAGTGAAA+TGG	+	chr8_2:48514014-48514033	Msa1251930:CDS	30.0%
AACAAAACTGTCCTTAGAAA+GGG	+	chr8_2:48514302-48514321	Msa1251930:CDS	30.0%
CTTAGAAAGGGAAAATTTGT+TGG	+	chr8_2:48514314-48514333	Msa1251930:CDS	30.0%
TGCTGGAATGAATTTGAAAA+AGG	+	chr8_2:48514440-48514459	Msa1251930:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8_2	gene	48512281	48514587	48512281	ID=Msa1251930;Name=Msa1251930
chr8_2	mRNA	48512281	48514587	48512281	ID=Msa1251930-mRNA-1;Parent=Msa1251930;Name=Msa1251930-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|768
chr8_2	exon	48512281	48514587	48512281	ID=Msa1251930-mRNA-1:exon:14624;Parent=Msa1251930-mRNA-1
chr8_2	CDS	48512281	48514587	48512281	ID=Msa1251930-mRNA-1:cds;Parent=Msa1251930-mRNA-1

Gene Sequence

>Msa1251930

ATGGAAAAAGTTTATGAAGAGCTGGATGAAGCAAAAGCTGAGATTGAGAAACTCAAGGCAGAACTAAGAGCAAAATCAGATTCACTTGAGAATTTGAAGAGATCCCTTAATGCACAAGTCAATCAAACACAAGAAGCAAAGTCCAAATCTGAGAAGCTTGATCAGGAACTGCTTCAGAAGGAGGACGAAATTGCTGAGACGAAGAATTTGTACGAAAATCTCAAAGGGAATTTGAAAGAACAAGATTCCATCATCAAACATCTCAAAGCTGCAAATGATAAACTTCGAGTTGATTTCGATGAAAAGATTAAAAAGTGGGAAGATGAGAAAAGAGGGTTGGTGTTGGCCTTAGAGGAAGTAAATGACAAGGCAGCGAATCAAGAACAGCAGGTTTGTCAATACAGAAAAGAAATCGAAAGCCTGAAAAGTTGTCTATCGGTTTCAAAGCAGAAGTGTTCAGAATCACAGAAAAAATTAAAATCATCCAAAGAGCTAAGTGAAAGAGATGGCATGTTTCAGAAGTTGGAGGAGGAAAAAGTGAAGTTGGAAGATCAATTAAAGTGGAAGAAGGAGCAGTTTAAACATCTAGAAGATGCATATGAGAAACTTAAAGGCCAATTTAAGTCTAGCAAGAAAGAGTGGGAGATGGAAAAATCTACATTGCTTGATGAGATTTCTTCACTTGAAACTAAATTAGATTCTCAGATCAGAATATCAGAAGATCTTCGACATCAGTTACAGACCTGCCACCAAGCTCTTGCTCATGTAGAAAGTCAGAAAAAGCGACTCGAAGTTGAAGTTTCAGAATATAGGCTGCAGCTTGATAATGCCGGTAGTGAGTACCACGATGCCAGACCACAGCTCGATTGCTTGAACTCTGATCGCGACAAAGATATTGCTGATTTGAGATATTCGTTGAAAACAAAAGAGGCGCATATTAAAGAATCAAAGTACCAAATGGAGAAGCTAGAGCAAGAAAATCAAGAGTTAAGGATGTCACTCAGAGAACTACAGGAAGCTCAAATTCAAGAAGCAGGTGCTTACTATTCGCAGTCAAAGTTGAGGACCAAGCTTAAAAATTTAGAACAAACACATAAAGAGTGTGCCTTGACTCTTAAGGCTAGAGAGGCCGAATGGGACTCTCGGATAGAACAATTGACTGGACAACTGAATACGTGTCAATCTGAGTTGGAAGCCAAAATTGCAGCAGTGGAAGAGCTTCAGATGGAGTTGGAAAGTTCTCATTCGATAACCGTTGAGACAAGGTTGTTGAATGAGGAGATGTCTGTGATGCTGCTAGTGTTGAAGCAAGGAATTTCTGAGGCTCAGCTAAGGCTTTCCCATTATAAAAATGAGATGGATCTACTCAACAAAGAGAAAGAAGGGGAGATTTTTCAACTGATGAAGCAGTTGGAGATGAAAGATGATGCTTTGATCAGTGCTCAAAAAGGCTTAAATGAAGAACGCGAGAAAGCAGCATGTTTGATGAGGAAGATTGAGTCCTATGGATCCAACAAAGAATTGCAGCACTCACTTCAAAATGAACTTGAGTCCAATGAATGCAACAAAGAACTGCAGAACGAACTTGATAGGTACAAGGAAATGCTGGAGGAATCGATTAGGTGTCAGCGGATTCTCGAGGAGAAGGTTTTGCAGATTGAATGTGAATCAAAAGAACAACTTAGAGAAACACATGAAGCTTTAGACATTGCTATCAATGAACTGGATGAGAGAATTTGCGAAAGAAGTGAAATGGAATTTGAATTGCAAATATGGAAGTCAATTCTCGATCGTTTGAAGAATGATCTTGAACAAAGCCATTTGACGCGTAAAGAACTAGAAGCATCACTTCTTGCACAGATAGATGTTGGTGAAAGCATCAAGCAAGAGAAAGATAAGGTTGTTGAGGAGCTTCAGAAAGCGGTTGTTTTGTTGGAACAAGAATCATTTAGAAGAGAATTTGAGAGTGTTGTGATTGCAAAAGGCACTATGGAAAGAGTCTGTGAGCTGAATGAAAATGCAACAAAACTGTCCTTAGAAAGGGAAAATTTGTTGGCTTTTGTTCAAGGGTTGTATGATAGAATCTATGAGTTGTCTAATGCAGACACTCAACTGAGGGACATGTTGAGAAGCATGGAGGAATCTTTTGAGATTGATGGTGCTGGAATGAATTTGAAAAAGGATAATAGCTTTTTCCATGTGAAAGAGAATATGCAAGTTCAAGTTTCTCCCACTAGTAGGATAAAGAAAGTTGAAGCCATTTCTGATACAAGATCTCCATTCAAGGAGCTAAACAGTAGTTGTTAG

Protein sequence

>Msa1251930

MEKVYEELDEAKAEIEKLKAELRAKSDSLENLKRSLNAQVNQTQEAKSKSEKLDQELLQKEDEIAETKNLYENLKGNLKEQDSIIKHLKAANDKLRVDFDEKIKKWEDEKRGLVLALEEVNDKAANQEQQVCQYRKEIESLKSCLSVSKQKCSESQKKLKSSKELSERDGMFQKLEEEKVKLEDQLKWKKEQFKHLEDAYEKLKGQFKSSKKEWEMEKSTLLDEISSLETKLDSQIRISEDLRHQLQTCHQALAHVESQKKRLEVEVSEYRLQLDNAGSEYHDARPQLDCLNSDRDKDIADLRYSLKTKEAHIKESKYQMEKLEQENQELRMSLRELQEAQIQEAGAYYSQSKLRTKLKNLEQTHKECALTLKAREAEWDSRIEQLTGQLNTCQSELEAKIAAVEELQMELESSHSITVETRLLNEEMSVMLLVLKQGISEAQLRLSHYKNEMDLLNKEKEGEIFQLMKQLEMKDDALISAQKGLNEEREKAACLMRKIESYGSNKELQHSLQNELESNECNKELQNELDRYKEMLEESIRCQRILEEKVLQIECESKEQLRETHEALDIAINELDERICERSEMEFELQIWKSILDRLKNDLEQSHLTRKELEASLLAQIDVGESIKQEKDKVVEELQKAVVLLEQESFRREFESVVIAKGTMERVCELNENATKLSLERENLLAFVQGLYDRIYELSNADTQLRDMLRSMEESFEIDGAGMNLKKDNSFFHVKENMQVQVSPTSRIKKVEAISDTRSPFKELNSSC*