AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0974410


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0974410 MtrunA17_Chr6g0453121 82.636 478 17 4 1 432 1 458 0.0 758
Msa0974410 MtrunA17_Chr6g0450671 46.562 320 123 8 126 431 144 429 6.62e-76 243
Msa0974410 MtrunA17_Chr2g0285791 48.325 209 88 3 129 337 130 318 1.31e-52 179
Msa0974410 MtrunA17_Chr7g0272621 27.445 317 181 11 132 432 147 430 1.31e-23 102
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0974410 AT5G39830.1 59.825 458 111 8 25 432 14 448 1.92e-173 493
Msa0974410 AT5G39830.2 56.769 458 111 8 25 432 14 434 3.20e-161 461
Msa0974410 AT3G27925.1 46.708 319 122 9 126 430 151 435 1.23e-74 240
Msa0974410 AT3G27925.2 46.708 319 122 9 126 430 151 435 1.23e-74 240
Msa0974410 AT4G18370.1 44.538 238 109 4 107 341 103 320 1.17e-51 177
Msa0974410 AT4G18370.2 43.452 168 86 3 107 271 103 264 2.40e-32 124
Msa0974410 AT5G27660.2 30.063 316 169 13 132 429 149 430 8.59e-28 114
Msa0974410 AT5G27660.1 29.524 315 166 14 132 429 144 419 1.44e-25 108
Msa0974410 AT4G18370.3 41.007 139 73 3 107 242 103 235 3.47e-23 98.2

Find 117 sgRNAs with CRISPR-Local

Find 351 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCACCTGTTTCCGGGATTTA+TGG 0.171376 6_4:-7450528 None:intergenic
AATTCGAAAGGAAGCTTAAT+TGG 0.172968 6_4:+7451026 Msa0974410:CDS
AGCTTCATGTCACCTGTTTC+CGG 0.209380 6_4:-7450537 None:intergenic
CATTGGAGCTGATCGTTTAA+AGG 0.210417 6_4:+7449895 Msa0974410:CDS
AATGAATAAGTGGGGTGTTC+AGG 0.238365 6_4:-7452502 None:intergenic
CCCAACAAGACGCGTGTTAA+TGG 0.257254 6_4:+7447947 Msa0974410:CDS
CCATTAACACGCGTCTTGTT+GGG 0.282657 6_4:-7447947 None:intergenic
CGAGATATCTTTAGTAAAAC+TGG 0.325407 6_4:+7450470 Msa0974410:CDS
ATTCCTCTTTCTGTTCTTCA+AGG 0.325870 6_4:+7447985 Msa0974410:CDS
CCCACTGCAAGAGGCTTTGC+TGG 0.333571 6_4:+7451665 Msa0974410:CDS
ATTGGCTTTAAAATTTCCTT+AGG 0.338045 6_4:-7450338 None:intergenic
AGGAGAGTTGTTGAAGGTAT+TGG 0.338372 6_4:+7452223 Msa0974410:CDS
TTGAATAATGTACGTAAGGT+TGG 0.345055 6_4:+7452470 Msa0974410:three_prime_UTR
GTTCCTCAGTTGATTCAGTT+TGG 0.355755 6_4:+7451238 Msa0974410:CDS
ACTCCAGAGCCATTTCCTTC+AGG 0.357026 6_4:-7449525 None:intergenic
GCTTCATGTCACCTGTTTCC+GGG 0.359942 6_4:-7450536 None:intergenic
CAAGATGAAACTCAGGATTC+TGG 0.366678 6_4:+7447897 Msa0974410:CDS
TACCTTGTTGAAATGGAAAT+AGG 0.366837 6_4:-7446477 None:intergenic
GCCATTAACACGCGTCTTGT+TGG 0.377181 6_4:-7447948 None:intergenic
AGTTGATTTGCAATCAAGTC+TGG 0.378170 6_4:-7451473 None:intergenic
AGTAAAACTGGTGTAACAAT+TGG 0.390549 6_4:+7450482 Msa0974410:CDS
ATGAATAAGTGGGGTGTTCA+GGG 0.391594 6_4:-7452501 None:intergenic
GAAAGTCGGGCAGCAATGTT+TGG 0.395952 6_4:+7450385 Msa0974410:CDS
AAATGGCTCTGGAGTAGTTT+GGG 0.399205 6_4:+7449533 Msa0974410:CDS
AGAAGAGTACCTTGTTGAAA+TGG 0.401114 6_4:-7446484 None:intergenic
GAAATGGCTCTGGAGTAGTT+TGG 0.404625 6_4:+7449532 Msa0974410:CDS
TCTAAAGAAAAGAGAGATAA+GGG 0.410127 6_4:-7446286 None:intergenic
CAACAGATTCCTGAAGGAAA+TGG 0.413537 6_4:+7449516 Msa0974410:intron
AAATGGAGCTCTTATTCTTA+CGG 0.419734 6_4:+7451505 Msa0974410:CDS
TGTTCTTCAAGGTACTTGTC+AGG 0.419796 6_4:+7447996 Msa0974410:CDS
CAATTTAAGGTTGTTAGAGC+TGG 0.421502 6_4:+7451431 Msa0974410:intron
TTGGCTTTAAAATTTCCTTA+GGG 0.437236 6_4:-7450337 None:intergenic
CTCTAAAGAAAAGAGAGATA+AGG 0.439712 6_4:-7446287 None:intergenic
AATCAACTTAACGTTCGAAA+TGG 0.442751 6_4:+7451488 Msa0974410:CDS
TGAATAATGTACGTAAGGTT+GGG 0.443788 6_4:+7452471 Msa0974410:three_prime_UTR
ATTCGAAAGGAAGCTTAATT+GGG 0.445307 6_4:+7451027 Msa0974410:CDS
CAGCCATAAATCCCGGAAAC+AGG 0.448059 6_4:+7450525 Msa0974410:CDS
CAACGACCTGACCAGAGCTT+GGG 0.456636 6_4:-7449726 None:intergenic
AATAGTCTTGCTGCCAAAGT+AGG 0.466843 6_4:+7451635 Msa0974410:CDS
GAGAAACCCAAGCTCTGGTC+AGG 0.470011 6_4:+7449720 Msa0974410:CDS
AAAAGAGAGATAAGGGTAAG+TGG 0.471126 6_4:-7446279 None:intergenic
AGGATTCTGGTAACATGATA+AGG 0.478607 6_4:+7447910 Msa0974410:CDS
AAAGGATCTAGCTGTCTTGA+AGG 0.481432 6_4:+7449913 Msa0974410:CDS
ATTCCTGAAGGAAATGGCTC+TGG 0.481629 6_4:+7449522 Msa0974410:CDS
GGTATTGCAGGAACTTCAGC+TGG 0.482116 6_4:+7451175 Msa0974410:CDS
TTGGCGATTGGAAATCCATT+CGG 0.493184 6_4:+7450404 Msa0974410:CDS
AGTGGGATTTAGTCCTACTT+TGG 0.499080 6_4:-7451648 None:intergenic
GGGCAGCAATGTTTGGCGAT+TGG 0.500043 6_4:+7450392 Msa0974410:CDS
AGTTGAAAGCTTACCTCTGC+AGG 0.501652 6_4:-7448891 None:intergenic
AAATAGGTAGTTGAGGAGGA+AGG 0.502176 6_4:-7446461 None:intergenic
GCAACGACCTGACCAGAGCT+TGG 0.506091 6_4:-7449727 None:intergenic
CTGAGGAACGATTCGACGTA+CGG 0.506262 6_4:-7451224 None:intergenic
AGTCGTCGTCTCTGAAAGTC+GGG 0.506598 6_4:+7450372 Msa0974410:CDS
TCAGAGGGGTGATGAAAAGT+TGG 0.507555 6_4:+7452283 Msa0974410:CDS
AGTAATGTTGTTGATTCAGA+GGG 0.512390 6_4:+7452268 Msa0974410:CDS
GCCGCAATATTTACTCAGAC+AGG 0.513837 6_4:+7451056 Msa0974410:CDS
TAAATGTACAGCACTAGCAT+TGG 0.516141 6_4:+7448806 Msa0974410:intron
AAATGTACAGCACTAGCATT+GGG 0.518650 6_4:+7448807 Msa0974410:intron
CTTTCGAGAAACCCAAGCTC+TGG 0.521386 6_4:+7449715 Msa0974410:CDS
GAGTCGTCGTCTCTGAAAGT+CGG 0.521398 6_4:+7450371 Msa0974410:CDS
AATAGGTAGTTGAGGAGGAA+GGG 0.530190 6_4:-7446460 None:intergenic
CACATTGTGACAAATTATCA+TGG 0.530659 6_4:+7449567 Msa0974410:CDS
ATTCGACGTACGGTTGAAGA+TGG 0.535780 6_4:-7451214 None:intergenic
AAAACTGGTGTAACAATTGG+AGG 0.537498 6_4:+7450485 Msa0974410:CDS
AATATTGAATAATGTACGTA+AGG 0.540239 6_4:+7452466 Msa0974410:three_prime_UTR
GCGAATTAATATTCTAGCAT+CGG 0.540669 6_4:+7449750 Msa0974410:CDS
AAGTAATGTTGTTGATTCAG+AGG 0.544865 6_4:+7452267 Msa0974410:CDS
GCAGGAACTTCAGCTGGTGT+AGG 0.547550 6_4:+7451181 Msa0974410:CDS
GTACCTTGAAGAACAGAAAG+AGG 0.548487 6_4:-7447988 None:intergenic
ATTAATATTCTAGCATCGGA+AGG 0.551526 6_4:+7449754 Msa0974410:CDS
CTTACCTCTGCAGGAAAGAG+TGG 0.551630 6_4:-7448882 None:intergenic
CTTCCTTTCGAATTCAGAAG+TGG 0.558016 6_4:-7451017 None:intergenic
CATTAACACGCGTCTTGTTG+GGG 0.561982 6_4:-7447946 None:intergenic
CGAGCCACTCTTTCCTGCAG+AGG 0.564768 6_4:+7448878 Msa0974410:CDS
AAGCAGAGGAGAGTTGTTGA+AGG 0.564798 6_4:+7452217 Msa0974410:CDS
GTATTGGATGAGTATAATGT+AGG 0.571729 6_4:+7452239 Msa0974410:CDS
TGGAGTAGTTTGGGATGAAG+AGG 0.573454 6_4:+7449542 Msa0974410:CDS
GACTGTTCAAGATGAAACTC+AGG 0.574029 6_4:+7447890 Msa0974410:CDS
ACCAGCAAAGCCTCTTGCAG+TGG 0.576026 6_4:-7451666 None:intergenic
ACTGATGCAGCCATAAATCC+CGG 0.576480 6_4:+7450518 Msa0974410:CDS
CCAGCAAAGCCTCTTGCAGT+GGG 0.577651 6_4:-7451665 None:intergenic
TATCAGCATGCAACAATATG+TGG 0.580336 6_4:+7446340 Msa0974410:CDS
ATTACAGGTTGACGCCCCTA+AGG 0.580715 6_4:+7450322 Msa0974410:intron
GAAATGGAAATAGGTAGTTG+AGG 0.583336 6_4:-7446468 None:intergenic
TGTTAGAGCTGGATTGAATG+TGG 0.584555 6_4:+7451442 Msa0974410:CDS
CTCTGCAGGAAAGAGTGGCT+CGG 0.589571 6_4:-7448877 None:intergenic
GGACTAAATCCCACTGCAAG+AGG 0.594251 6_4:+7451656 Msa0974410:CDS
GGCATCATGATTGCAAAGAG+AGG 0.597404 6_4:-7446439 None:intergenic
GGAGCTGTCTGTGGTACTTG+AGG 0.598004 6_4:+7452304 Msa0974410:CDS
CTCACAGTTGGTGTTATCAG+TGG 0.601440 6_4:+7450440 Msa0974410:CDS
TTTGATCACACCCTCACAGT+TGG 0.607170 6_4:+7450428 Msa0974410:CDS
TGGCTTTAAAATTTCCTTAG+GGG 0.607783 6_4:-7450336 None:intergenic
ACGTACGGTTGAAGATGGAA+TGG 0.614509 6_4:-7451209 None:intergenic
TTTAAAGCCAATCAATGTGG+GGG 0.614822 6_4:+7450349 Msa0974410:CDS
TAATATCAACAGATTCCTGA+AGG 0.617377 6_4:+7449510 Msa0974410:intron
GGAGTAGTTTGGGATGAAGA+GGG 0.618790 6_4:+7449543 Msa0974410:CDS
ATGGAAATAGGTAGTTGAGG+AGG 0.619687 6_4:-7446465 None:intergenic
GGTCCACTTCTGAATTCGAA+AGG 0.625577 6_4:+7451014 Msa0974410:CDS
CATGATAATTTGTCACAATG+TGG 0.627236 6_4:-7449566 None:intergenic
TTCTGGTAACATGATAAGGA+AGG 0.629485 6_4:+7447914 Msa0974410:CDS
GCTCGGAAGAAAACACAGGA+GGG 0.633419 6_4:-7448860 None:intergenic
ACTGGTGTAACAATTGGAGG+TGG 0.636249 6_4:+7450488 Msa0974410:CDS
CTCGGAAGAAAACACAGGAG+GGG 0.639626 6_4:-7448859 None:intergenic
GGCTCGGAAGAAAACACAGG+AGG 0.639827 6_4:-7448861 None:intergenic
CACTGATAACACCAACTGTG+AGG 0.640547 6_4:-7450439 None:intergenic
GCCTGTCTGAGTAAATATTG+CGG 0.643094 6_4:-7451057 None:intergenic
ACTGATAACACCAACTGTGA+GGG 0.645698 6_4:-7450438 None:intergenic
AGGAAGATATGCAAATCTCA+CGG 0.655143 6_4:-7446419 None:intergenic
TTAATATTCTAGCATCGGAA+GGG 0.655686 6_4:+7449755 Msa0974410:CDS
TTTCCAAACTGAATCAACTG+AGG 0.656560 6_4:-7451241 None:intergenic
TCTTGGTAGGTCAAAAGCAG+AGG 0.657346 6_4:+7452203 Msa0974410:intron
TACCTATTTCCATTTCAACA+AGG 0.669296 6_4:+7446475 Msa0974410:CDS
AGGGTGTGATCAAATCCGAA+TGG 0.681800 6_4:-7450419 None:intergenic
AGTGGCTCGGAAGAAAACAC+AGG 0.682006 6_4:-7448864 None:intergenic
TGAAAAGTTGGAGCTGTCTG+TGG 0.698123 6_4:+7452295 Msa0974410:CDS
GTAATGTTGTTGATTCAGAG+GGG 0.723268 6_4:+7452269 Msa0974410:CDS
AAGATATGCAAATCTCACGG+CGG 0.795918 6_4:-7446416 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAATAGTAAATATGAAAT+TGG + chr6_4:7448652-7448671 Msa0974410:intron 10.0%
!!! TTATTTTATTTTGTAACAAA+CGG + chr6_4:7452039-7452058 Msa0974410:intron 10.0%
!! TGAAATAAAAATTAGTAATT+TGG - chr6_4:7452097-7452116 None:intergenic 10.0%
!! TTTAACATAAAATAAAACAA+TGG - chr6_4:7452143-7452162 None:intergenic 10.0%
!!! AAAAATAAGAAATTTTAAGT+TGG + chr6_4:7452557-7452576 Msa0974410:three_prime_UTR 10.0%
!! AGTTATTAACCTAATTATAA+TGG - chr6_4:7447058-7447077 None:intergenic 15.0%
!!! TTTTGTTATTGAAATCTTAA+GGG - chr6_4:7447737-7447756 None:intergenic 15.0%
!!! ATTTTGTTATTGAAATCTTA+AGG - chr6_4:7447738-7447757 None:intergenic 15.0%
!! TTTGATTGTTATACATATAA+TGG + chr6_4:7447769-7447788 Msa0974410:intron 15.0%
!!! TTTTATTTTTGTTTACTGTT+TGG + chr6_4:7447827-7447846 Msa0974410:intron 15.0%
!!! TTTATTTTTGTTTACTGTTT+GGG + chr6_4:7447828-7447847 Msa0974410:intron 15.0%
!! AATATAAACATACATAATCA+AGG - chr6_4:7450061-7450080 None:intergenic 15.0%
!! TATATGATGTAAAGTTAAAT+AGG - chr6_4:7450243-7450262 None:intergenic 15.0%
!! AAATAAGCTAAAATAGATTA+TGG + chr6_4:7450803-7450822 Msa0974410:intron 15.0%
!!! AAAGAAAAAACTATAACTTT+TGG - chr6_4:7451115-7451134 None:intergenic 15.0%
!! CAAATATATGTGTATATATA+TGG - chr6_4:7451397-7451416 None:intergenic 15.0%
!!! TATTTTATTTTGTAACAAAC+GGG + chr6_4:7452040-7452059 Msa0974410:intron 15.0%
!!! ACATTTTAAAATGAATAAGT+GGG - chr6_4:7452514-7452533 None:intergenic 15.0%
!!! TATGCTTATGATATTTTAAC+TGG - chr6_4:7446253-7446272 None:intergenic 20.0%
!! AAAACCTAAAATTCTCATAA+GGG - chr6_4:7446625-7446644 None:intergenic 20.0%
!!! TTTTTGCTTATAATTGAGTT+TGG - chr6_4:7446710-7446729 None:intergenic 20.0%
!!! ATGAAAAATGGTTCAAATTT+TGG - chr6_4:7447795-7447814 None:intergenic 20.0%
!!! ATGAATAGTTTTAGTATAAG+AGG + chr6_4:7448138-7448157 Msa0974410:intron 20.0%
!! TGGTATACTATAATAGATAA+TGG + chr6_4:7448228-7448247 Msa0974410:intron 20.0%
!! AAACTTTGCTAGTAAATAAT+AGG - chr6_4:7448767-7448786 None:intergenic 20.0%
!!! TTTTTACTTACAAATAGCTT+TGG + chr6_4:7449172-7449191 Msa0974410:intron 20.0%
!!! AATTAAAAGTATAGAAACCA+TGG - chr6_4:7449274-7449293 None:intergenic 20.0%
!!! ATGGTTTCTATACTTTTAAT+TGG + chr6_4:7449273-7449292 Msa0974410:intron 20.0%
!! TAAACTAGATAATCACATAT+TGG - chr6_4:7449423-7449442 None:intergenic 20.0%
!!! GAATATTTTAAGATTATGTG+AGG + chr6_4:7449646-7449665 Msa0974410:intron 20.0%
!! TTCTTTATTACCCTTTATAA+AGG - chr6_4:7449860-7449879 None:intergenic 20.0%
!!! ATGTTTTCTTTTCTACTTTT+TGG + chr6_4:7449937-7449956 Msa0974410:intron 20.0%
!! ATTTGTTCGAAATCAATTAA+AGG + chr6_4:7449960-7449979 Msa0974410:intron 20.0%
!!! GTTGGTAAATTAAATTTGAA+AGG - chr6_4:7450592-7450611 None:intergenic 20.0%
!! GAAAAACAACAATAAAAGTA+AGG - chr6_4:7451153-7451172 None:intergenic 20.0%
!!! ACTTTTATTGTTGTTTTTCT+TGG + chr6_4:7451154-7451173 Msa0974410:CDS 20.0%
!! ATAAATACAAAGTTTGATTG+CGG - chr6_4:7451557-7451576 None:intergenic 20.0%
!!! TTTGTTACAGTTTTTTCTTT+GGG + chr6_4:7451744-7451763 Msa0974410:intron 20.0%
!! TGTAAAGAATTTGTAACAAA+CGG - chr6_4:7451802-7451821 None:intergenic 20.0%
!! TCTTTACAAAAAATGAGAAT+TGG + chr6_4:7451814-7451833 Msa0974410:intron 20.0%
!!! AAAACAACTTTTCATTAAAG+CGG - chr6_4:7451865-7451884 None:intergenic 20.0%
!!! AGTTAATTACAATGCATTTT+TGG + chr6_4:7452387-7452406 Msa0974410:three_prime_UTR 20.0%
!! AATATTGAATAATGTACGTA+AGG + chr6_4:7452466-7452485 Msa0974410:three_prime_UTR 20.0%
!!! CATTTTAAAATGAATAAGTG+GGG - chr6_4:7452513-7452532 None:intergenic 20.0%
!!! CACATTTTAAAATGAATAAG+TGG - chr6_4:7452515-7452534 None:intergenic 20.0%
! TCTAAAGAAAAGAGAGATAA+GGG - chr6_4:7446289-7446308 None:intergenic 25.0%
! CAAAACCTAAAATTCTCATA+AGG - chr6_4:7446626-7446645 None:intergenic 25.0%
!!! TGAGAATTTTAGGTTTTGTT+TGG + chr6_4:7446628-7446647 Msa0974410:intron 25.0%
! AAAATAAACCTAATCCAAAC+GGG - chr6_4:7446827-7446846 None:intergenic 25.0%
! CAAAATAAACCTAATCCAAA+CGG - chr6_4:7446828-7446847 None:intergenic 25.0%
! AGTAGATGACCATTATAATT+AGG + chr6_4:7447046-7447065 Msa0974410:intron 25.0%
!! ATTTTGCTTATAAATGAGTC+TGG + chr6_4:7447216-7447235 Msa0974410:intron 25.0%
! GCTTATTTGAACTTATTTAC+TGG - chr6_4:7447630-7447649 None:intergenic 25.0%
! TTCAAATAAGCCAATTCAAA+GGG + chr6_4:7447639-7447658 Msa0974410:intron 25.0%
!!! TTTAAGGTCTTTTTGAACTT+GGG - chr6_4:7447666-7447685 None:intergenic 25.0%
!! AAGGGTTAAATATTTTGTAC+CGG - chr6_4:7447719-7447738 None:intergenic 25.0%
! ACTATTCATAACAATTACAC+TGG - chr6_4:7448127-7448146 None:intergenic 25.0%
! TTGATCCTATAATAGCTTAT+TGG + chr6_4:7448208-7448227 Msa0974410:intron 25.0%
! GTATACCAATAAGCTATTAT+AGG - chr6_4:7448216-7448235 None:intergenic 25.0%
! AATGAACTTTCCAATATACT+TGG - chr6_4:7448342-7448361 None:intergenic 25.0%
!! TATATTTCTGTAAACGTTGA+TGG + chr6_4:7448391-7448410 Msa0974410:intron 25.0%
! AAGTGTTATACAAATCACAA+TGG - chr6_4:7448935-7448954 None:intergenic 25.0%
!!! TTTCTATACTTTTAATTGGC+AGG + chr6_4:7449277-7449296 Msa0974410:intron 25.0%
! ATGTATTACTTTCAAACAGT+TGG - chr6_4:7449313-7449332 None:intergenic 25.0%
! TTCTTGTATTACTCAGTAAT+TGG + chr6_4:7449685-7449704 Msa0974410:intron 25.0%
!! AGGGTAATAAAGAATTTTGA+AGG + chr6_4:7449866-7449885 Msa0974410:intron 25.0%
!!! AATTTTGAAGGTATACTCAT+TGG + chr6_4:7449878-7449897 Msa0974410:CDS 25.0%
! CTTGTACAAAATTATGAATG+TGG + chr6_4:7450000-7450019 Msa0974410:intron 25.0%
! ATGAATAAGAGTCATTTCTA+GGG - chr6_4:7450201-7450220 None:intergenic 25.0%
! TATGAATAAGAGTCATTTCT+AGG - chr6_4:7450202-7450221 None:intergenic 25.0%
!!! TTGGCTTTAAAATTTCCTTA+GGG - chr6_4:7450340-7450359 None:intergenic 25.0%
!!! ATTGGCTTTAAAATTTCCTT+AGG - chr6_4:7450341-7450360 None:intergenic 25.0%
!!! AATTTTAAAGCCAATCAATG+TGG + chr6_4:7450346-7450365 Msa0974410:CDS 25.0%
!!! ATTTTAAAGCCAATCAATGT+GGG + chr6_4:7450347-7450366 Msa0974410:CDS 25.0%
!! CAGTTTTACTAAAGATATCT+CGG - chr6_4:7450472-7450491 None:intergenic 25.0%
! TTTACAACTTATGTTTCCTT+AGG + chr6_4:7451604-7451623 Msa0974410:intron 25.0%
! AGAAAAAACTGTAACAAAGA+AGG - chr6_4:7451742-7451761 None:intergenic 25.0%
!!! CTTTGTTACAGTTTTTTCTT+TGG + chr6_4:7451743-7451762 Msa0974410:intron 25.0%
!!! TTGTTACAGTTTTTTCTTTG+GGG + chr6_4:7451745-7451764 Msa0974410:intron 25.0%
!!! GTGGAAAAAAAATCACTTTT+AGG + chr6_4:7451767-7451786 Msa0974410:intron 25.0%
! GTAAAGAATTTGTAACAAAC+GGG - chr6_4:7451801-7451820 None:intergenic 25.0%
! GAAAAATGTGATTGTCATTA+GGG + chr6_4:7451922-7451941 Msa0974410:intron 25.0%
!!! TTTTTATTTCACCTTTCCTA+TGG + chr6_4:7452106-7452125 Msa0974410:intron 25.0%
!!! TGAAAATTTTGGTACATTCT+TGG + chr6_4:7452186-7452205 Msa0974410:intron 25.0%
!!! AATGTGAATTTTTAGCAACT+AGG + chr6_4:7452529-7452548 Msa0974410:three_prime_UTR 25.0%
! CTCTAAAGAAAAGAGAGATA+AGG - chr6_4:7446290-7446309 None:intergenic 30.0%
TACCTATTTCCATTTCAACA+AGG + chr6_4:7446475-7446494 Msa0974410:CDS 30.0%
TACCTTGTTGAAATGGAAAT+AGG - chr6_4:7446480-7446499 None:intergenic 30.0%
! TAGTCCCTTATGAGAATTTT+AGG + chr6_4:7446618-7446637 Msa0974410:intron 30.0%
TTGCTTATAATTGAGTTTGG+AGG - chr6_4:7446707-7446726 None:intergenic 30.0%
CAAAATAAGCCTAATCCAAA+TGG + chr6_4:7447015-7447034 Msa0974410:intron 30.0%
TCTACTATTCTTGACTTTAC+TGG - chr6_4:7447194-7447213 None:intergenic 30.0%
TGTATAAGCTTAGTAGGAAA+AGG - chr6_4:7447270-7447289 None:intergenic 30.0%
AGCTTATGTATAAGCTTAGT+AGG - chr6_4:7447276-7447295 None:intergenic 30.0%
ACTTATTTCCATAAACTCTC+TGG - chr6_4:7447312-7447331 None:intergenic 30.0%
ACTATTTGAGAAAGAGCTTA+TGG - chr6_4:7447591-7447610 None:intergenic 30.0%
GTTCAAATAAGCCAATTCAA+AGG + chr6_4:7447638-7447657 Msa0974410:intron 30.0%
TCAAATAAGCCAATTCAAAG+GGG + chr6_4:7447640-7447659 Msa0974410:intron 30.0%
!!! CTTTAAGGTCTTTTTGAACT+TGG - chr6_4:7447667-7447686 None:intergenic 30.0%
TCACTAAGGATTACTCTTTA+AGG - chr6_4:7447682-7447701 None:intergenic 30.0%
!! TTGAACCATTTTTCATCACA+AGG + chr6_4:7447799-7447818 Msa0974410:intron 30.0%
!! TGAACCATTTTTCATCACAA+GGG + chr6_4:7447800-7447819 Msa0974410:intron 30.0%
!! ATTTTTGTTTACTGTTTGGG+AGG + chr6_4:7447831-7447850 Msa0974410:intron 30.0%
!! TTTTTGTTTACTGTTTGGGA+GGG + chr6_4:7447832-7447851 Msa0974410:intron 30.0%
!! GAACCTGAAGCTTTAAATTA+AGG - chr6_4:7448165-7448184 None:intergenic 30.0%
AACTTGGGGAAAAAAGATAA+AGG - chr6_4:7448190-7448209 None:intergenic 30.0%
AGCTATTATAGGATCAACTT+GGG - chr6_4:7448205-7448224 None:intergenic 30.0%
AAGCTATTATAGGATCAACT+TGG - chr6_4:7448206-7448225 None:intergenic 30.0%
ATTTCGAACTGGAATTTGAA+GGG + chr6_4:7448359-7448378 Msa0974410:intron 30.0%
ATTTGACAACACTGCATAAT+AGG - chr6_4:7448436-7448455 None:intergenic 30.0%
AATCGAACAATATGTCTATC+AGG - chr6_4:7448729-7448748 None:intergenic 30.0%
AAATCACAATGGACAAAAAG+AGG - chr6_4:7448924-7448943 None:intergenic 30.0%
! AAGATATTGATAACCATGAC+AGG - chr6_4:7448992-7449011 None:intergenic 30.0%
ATTCAAAATCGATACACACT+AGG - chr6_4:7449081-7449100 None:intergenic 30.0%
TGATCGCTATATTCAAAATC+AGG - chr6_4:7449122-7449141 None:intergenic 30.0%
TATCTTACGAATTCCTGATT+AGG + chr6_4:7449200-7449219 Msa0974410:intron 30.0%
TTTCAAACAGTTGGACAATT+CGG - chr6_4:7449304-7449323 None:intergenic 30.0%
ACATATCATTCTTGTACACT+AGG - chr6_4:7449466-7449485 None:intergenic 30.0%
TAGTGTACAAGAATGATATG+TGG + chr6_4:7449465-7449484 Msa0974410:intron 30.0%
TAATATCAACAGATTCCTGA+AGG + chr6_4:7449510-7449529 Msa0974410:intron 30.0%
! CATGATAATTTGTCACAATG+TGG - chr6_4:7449569-7449588 None:intergenic 30.0%
CACATTGTGACAAATTATCA+TGG + chr6_4:7449567-7449586 Msa0974410:CDS 30.0%
ACATAGTTCACTAATGTCTA+CGG - chr6_4:7449626-7449645 None:intergenic 30.0%
GCGAATTAATATTCTAGCAT+CGG + chr6_4:7449750-7449769 Msa0974410:CDS 30.0%
! ATTAATATTCTAGCATCGGA+AGG + chr6_4:7449754-7449773 Msa0974410:CDS 30.0%
! TTAATATTCTAGCATCGGAA+GGG + chr6_4:7449755-7449774 Msa0974410:CDS 30.0%
TCTGACACTTTCCTTTATAA+AGG + chr6_4:7449846-7449865 Msa0974410:intron 30.0%
CTGACACTTTCCTTTATAAA+GGG + chr6_4:7449847-7449866 Msa0974410:intron 30.0%
GTTGAGATTTGTATGGATAA+TGG + chr6_4:7450086-7450105 Msa0974410:intron 30.0%
!! TGGCTTTAAAATTTCCTTAG+GGG - chr6_4:7450339-7450358 None:intergenic 30.0%
!!! TTTTAAAGCCAATCAATGTG+GGG + chr6_4:7450348-7450367 Msa0974410:CDS 30.0%
CGAGATATCTTTAGTAAAAC+TGG + chr6_4:7450470-7450489 Msa0974410:CDS 30.0%
AGTAAAACTGGTGTAACAAT+TGG + chr6_4:7450482-7450501 Msa0974410:CDS 30.0%
TCATGAAAGCTTATGAAAAC+AGG - chr6_4:7450846-7450865 None:intergenic 30.0%
AATTCGAAAGGAAGCTTAAT+TGG + chr6_4:7451026-7451045 Msa0974410:CDS 30.0%
ATTCGAAAGGAAGCTTAATT+GGG + chr6_4:7451027-7451046 Msa0974410:CDS 30.0%
TGGAAAAGTAAGTAGTTAAC+TGG + chr6_4:7451258-7451277 Msa0974410:intron 30.0%
GGAAAAGTAAGTAGTTAACT+GGG + chr6_4:7451259-7451278 Msa0974410:intron 30.0%
TTAATCACATAGCACACAAT+AGG - chr6_4:7451352-7451371 None:intergenic 30.0%
!! ACCATTGATTCGTCAATTTA+AGG + chr6_4:7451418-7451437 Msa0974410:intron 30.0%
ACCTTAAATTGACGAATCAA+TGG - chr6_4:7451422-7451441 None:intergenic 30.0%
AATCAACTTAACGTTCGAAA+TGG + chr6_4:7451488-7451507 Msa0974410:CDS 30.0%
AAATGGAGCTCTTATTCTTA+CGG + chr6_4:7451505-7451524 Msa0974410:CDS 30.0%
GGTACAAGAAACAAATTTCA+TGG - chr6_4:7451536-7451555 None:intergenic 30.0%
!!! AGACTATTTTTTGGAACCTA+AGG - chr6_4:7451623-7451642 None:intergenic 30.0%
CGAAAAATGTGATTGTCATT+AGG + chr6_4:7451921-7451940 Msa0974410:intron 30.0%
CATAAGTTATTCCATAGGAA+AGG - chr6_4:7452120-7452139 None:intergenic 30.0%
AATGGCATAAGTTATTCCAT+AGG - chr6_4:7452125-7452144 None:intergenic 30.0%
!! AATTTTGGTACATTCTTGGT+AGG + chr6_4:7452190-7452209 Msa0974410:intron 30.0%
GTATTGGATGAGTATAATGT+AGG + chr6_4:7452239-7452258 Msa0974410:CDS 30.0%
!! AAGTAATGTTGTTGATTCAG+AGG + chr6_4:7452267-7452286 Msa0974410:CDS 30.0%
!! AGTAATGTTGTTGATTCAGA+GGG + chr6_4:7452268-7452287 Msa0974410:CDS 30.0%
TTGAATAATGTACGTAAGGT+TGG + chr6_4:7452470-7452489 Msa0974410:three_prime_UTR 30.0%
TGAATAATGTACGTAAGGTT+GGG + chr6_4:7452471-7452490 Msa0974410:three_prime_UTR 30.0%
AAAAGAGAGATAAGGGTAAG+TGG - chr6_4:7446282-7446301 None:intergenic 35.0%
TATCAGCATGCAACAATATG+TGG + chr6_4:7446340-7446359 Msa0974410:CDS 35.0%
AGGAAGATATGCAAATCTCA+CGG - chr6_4:7446422-7446441 None:intergenic 35.0%
GAAATGGAAATAGGTAGTTG+AGG - chr6_4:7446471-7446490 None:intergenic 35.0%
!! AGAAGAGTACCTTGTTGAAA+TGG - chr6_4:7446487-7446506 None:intergenic 35.0%
TCACAATAGCCATTTGGATT+AGG - chr6_4:7447027-7447046 None:intergenic 35.0%
ATCTACTCACAATAGCCATT+TGG - chr6_4:7447033-7447052 None:intergenic 35.0%
ATTCTTGACTTTACTGGTAC+TGG - chr6_4:7447188-7447207 None:intergenic 35.0%
GAGTTATACCAGAGAGTTTA+TGG + chr6_4:7447301-7447320 Msa0974410:intron 35.0%
AGTGCTTATGTCAGTAGATT+AGG + chr6_4:7447396-7447415 Msa0974410:intron 35.0%
GTGCTTATGTCAGTAGATTA+GGG + chr6_4:7447397-7447416 Msa0974410:intron 35.0%
TACCATACGAGTGCTTATTA+TGG + chr6_4:7447475-7447494 Msa0974410:intron 35.0%
ATCCATAATAAGCACTCGTA+TGG - chr6_4:7447480-7447499 None:intergenic 35.0%
GACATGTTTATAAGCTCTTC+TGG - chr6_4:7447557-7447576 None:intergenic 35.0%
AAGAGTAATCCTTAGTGAGT+AGG + chr6_4:7447684-7447703 Msa0974410:intron 35.0%
!! TTTTTCAGTCCTACTCACTA+AGG - chr6_4:7447696-7447715 None:intergenic 35.0%
TGTTGTTGATGTGTGCTTAT+AGG + chr6_4:7447868-7447887 Msa0974410:intron 35.0%
AGGATTCTGGTAACATGATA+AGG + chr6_4:7447910-7447929 Msa0974410:CDS 35.0%
TTCTGGTAACATGATAAGGA+AGG + chr6_4:7447914-7447933 Msa0974410:CDS 35.0%
ATTCCTCTTTCTGTTCTTCA+AGG + chr6_4:7447985-7448004 Msa0974410:CDS 35.0%
AACATGAAAACAGAACTGTG+CGG - chr6_4:7448023-7448042 None:intergenic 35.0%
! GGTCCTTAATTTAAAGCTTC+AGG + chr6_4:7448159-7448178 Msa0974410:intron 35.0%
GCTATTATAGGATCAACTTG+GGG - chr6_4:7448204-7448223 None:intergenic 35.0%
GCACTAATTCAATAAGCTTC+AGG - chr6_4:7448259-7448278 None:intergenic 35.0%
TTGGAAAGTTCATTTCGAAC+TGG + chr6_4:7448348-7448367 Msa0974410:intron 35.0%
CATTTCGAACTGGAATTTGA+AGG + chr6_4:7448358-7448377 Msa0974410:intron 35.0%
TTGTCAAATAGCTGATGTAG+TGG + chr6_4:7448447-7448466 Msa0974410:intron 35.0%
TTGTTCCTTGATACGCTATT+TGG + chr6_4:7448509-7448528 Msa0974410:intron 35.0%
TTGAACCAAATAGCGTATCA+AGG - chr6_4:7448517-7448536 None:intergenic 35.0%
TAAATGTACAGCACTAGCAT+TGG + chr6_4:7448806-7448825 Msa0974410:intron 35.0%
AAATGTACAGCACTAGCATT+GGG + chr6_4:7448807-7448826 Msa0974410:intron 35.0%
CCTAGAAATATTGCTACTGA+AGG - chr6_4:7448964-7448983 None:intergenic 35.0%
CCTTCAGTAGCAATATTTCT+AGG + chr6_4:7448961-7448980 Msa0974410:intron 35.0%
TTTCTAGGTTATTCCTGTCA+TGG + chr6_4:7448976-7448995 Msa0974410:intron 35.0%
! CCTATTTTCTGAACCTAATC+AGG - chr6_4:7449216-7449235 None:intergenic 35.0%
CCTGATTAGGTTCAGAAAAT+AGG + chr6_4:7449213-7449232 Msa0974410:intron 35.0%
AGGTTCAGAAAATAGGTCTT+CGG + chr6_4:7449220-7449239 Msa0974410:intron 35.0%
!! GAATGTCGATTTGATAACCA+TGG + chr6_4:7449254-7449273 Msa0974410:intron 35.0%
GTACAAGAATGATATGTGGT+AGG + chr6_4:7449469-7449488 Msa0974410:intron 35.0%
CAAACAGAAGAAAACACAGA+GGG - chr6_4:7449803-7449822 None:intergenic 35.0%
TCAAACAGAAGAAAACACAG+AGG - chr6_4:7449804-7449823 None:intergenic 35.0%
TTCTTGCGTTGAGATTTGTA+TGG + chr6_4:7450079-7450098 Msa0974410:intron 35.0%
GCATTTCATAGATATGCCTA+TGG - chr6_4:7450136-7450155 None:intergenic 35.0%
TCTCACAGGATGTTATTAGT+CGG - chr6_4:7450266-7450285 None:intergenic 35.0%
TGGAAGCAAAATATTCTCAC+AGG - chr6_4:7450280-7450299 None:intergenic 35.0%
CAGCAACAAGAAATCAAACT+TGG - chr6_4:7450300-7450319 None:intergenic 35.0%
TTTCTTGTTGCTGCTATTAC+AGG + chr6_4:7450307-7450326 Msa0974410:intron 35.0%
! TTTAAAGCCAATCAATGTGG+GGG + chr6_4:7450349-7450368 Msa0974410:CDS 35.0%
AAAACTGGTGTAACAATTGG+AGG + chr6_4:7450485-7450504 Msa0974410:CDS 35.0%
TTCCTAGTTCAGACATCAAA+GGG - chr6_4:7450563-7450582 None:intergenic 35.0%
CAAAAGTCAAGCGATAAAGT+TGG - chr6_4:7450610-7450629 None:intergenic 35.0%
! TGACTTTTGCACAATAGACT+TGG + chr6_4:7450621-7450640 Msa0974410:intron 35.0%
TTGAACAGTTTATCCAAGCA+GGG - chr6_4:7450648-7450667 None:intergenic 35.0%
ATTGAACAGTTTATCCAAGC+AGG - chr6_4:7450649-7450668 None:intergenic 35.0%
TCCAAGAAAACTAATGGAAG+CGG - chr6_4:7450773-7450792 None:intergenic 35.0%
AAGCTCTCCAAGAAAACTAA+TGG - chr6_4:7450779-7450798 None:intergenic 35.0%
GCACTCGTTAAAATCTTGTT+TGG - chr6_4:7450917-7450936 None:intergenic 35.0%
!!! AACGAGTGCTTTTTCATGAT+TGG + chr6_4:7450928-7450947 Msa0974410:intron 35.0%
GTTTAGTGTGACTCTAATAG+CGG + chr6_4:7450990-7451009 Msa0974410:intron 35.0%
!!! GTTGTTTTTCTTGGTATTGC+AGG + chr6_4:7451163-7451182 Msa0974410:CDS 35.0%
TTTCCAAACTGAATCAACTG+AGG - chr6_4:7451244-7451263 None:intergenic 35.0%
! CAATTTAAGGTTGTTAGAGC+TGG + chr6_4:7451431-7451450 Msa0974410:intron 35.0%
!! AGTTGATTTGCAATCAAGTC+TGG - chr6_4:7451476-7451495 None:intergenic 35.0%
!!! TTGGCAGCAAGACTATTTTT+TGG - chr6_4:7451632-7451651 None:intergenic 35.0%
TTTGCTGGTAATATAGTCCT+TGG + chr6_4:7451680-7451699 Msa0974410:intron 35.0%
!!! TTACAGTTTTTTCTTTGGGG+TGG + chr6_4:7451748-7451767 Msa0974410:intron 35.0%
!! GTAATGTTGTTGATTCAGAG+GGG + chr6_4:7452269-7452288 Msa0974410:CDS 35.0%
! ATGCTTTTGTGAGGAACTGT+TGG - chr6_4:7446381-7446400 None:intergenic 40.0%
! ACACTGTTGATGCTTTTGTG+AGG - chr6_4:7446390-7446409 None:intergenic 40.0%
AAGATATGCAAATCTCACGG+CGG - chr6_4:7446419-7446438 None:intergenic 40.0%
AATAGGTAGTTGAGGAGGAA+GGG - chr6_4:7446463-7446482 None:intergenic 40.0%
AAATAGGTAGTTGAGGAGGA+AGG - chr6_4:7446464-7446483 None:intergenic 40.0%
ATGGAAATAGGTAGTTGAGG+AGG - chr6_4:7446468-7446487 None:intergenic 40.0%
CACTTAAATTAGTGCCCGTT+TGG + chr6_4:7446810-7446829 Msa0974410:intron 40.0%
AATTAGTGCCCGTTTGGATT+AGG + chr6_4:7446816-7446835 Msa0974410:intron 40.0%
AAGCTTAGTAGGAAAAGGCT+TGG - chr6_4:7447265-7447284 None:intergenic 40.0%
AGTGAGTAGGACTGAAAAAC+CGG + chr6_4:7447697-7447716 Msa0974410:intron 40.0%
TGCACCCTTGTGATGAAAAA+TGG - chr6_4:7447807-7447826 None:intergenic 40.0%
GACTGTTCAAGATGAAACTC+AGG + chr6_4:7447890-7447909 Msa0974410:CDS 40.0%
CAAGATGAAACTCAGGATTC+TGG + chr6_4:7447897-7447916 Msa0974410:CDS 40.0%
GTACCTTGAAGAACAGAAAG+AGG - chr6_4:7447991-7448010 None:intergenic 40.0%
! TGTTCTTCAAGGTACTTGTC+AGG + chr6_4:7447996-7448015 Msa0974410:CDS 40.0%
TATGGGGTTAACAAATCGCT+TGG - chr6_4:7448312-7448331 None:intergenic 40.0%
!! ATATACTTGGTGCGTGCTAT+GGG - chr6_4:7448329-7448348 None:intergenic 40.0%
!! AATATACTTGGTGCGTGCTA+TGG - chr6_4:7448330-7448349 None:intergenic 40.0%
ATAGCACGCACCAAGTATAT+TGG + chr6_4:7448329-7448348 Msa0974410:intron 40.0%
ACTGCATAATAGGAGTGAGA+AGG - chr6_4:7448426-7448445 None:intergenic 40.0%
AGCGTATCAAGGAACAATAG+TGG - chr6_4:7448506-7448525 None:intergenic 40.0%
TTCAAAGTGTAGCCGAATAG+CGG + chr6_4:7448538-7448557 Msa0974410:intron 40.0%
TATCAGCTATAGCCGCTATT+CGG - chr6_4:7448553-7448572 None:intergenic 40.0%
!!! CTGTTATTTTCTGCAATCCG+TGG + chr6_4:7448604-7448623 Msa0974410:intron 40.0%
TCACAATGGACAAAAAGAGG+AGG - chr6_4:7448921-7448940 None:intergenic 40.0%
! ACACCAGTCACATTAAGTTG+GGG - chr6_4:7449371-7449390 None:intergenic 40.0%
CACACCAGTCACATTAAGTT+GGG - chr6_4:7449372-7449391 None:intergenic 40.0%
CAACAGATTCCTGAAGGAAA+TGG + chr6_4:7449516-7449535 Msa0974410:intron 40.0%
!! AAATGGCTCTGGAGTAGTTT+GGG + chr6_4:7449533-7449552 Msa0974410:CDS 40.0%
CATTGGAGCTGATCGTTTAA+AGG + chr6_4:7449895-7449914 Msa0974410:CDS 40.0%
AAAGGATCTAGCTGTCTTGA+AGG + chr6_4:7449913-7449932 Msa0974410:CDS 40.0%
TCCTTTCGTACACTTTCCAT+AGG + chr6_4:7450117-7450136 Msa0974410:intron 40.0%
TTGGCGATTGGAAATCCATT+CGG + chr6_4:7450404-7450423 Msa0974410:CDS 40.0%
ACTGATAACACCAACTGTGA+GGG - chr6_4:7450441-7450460 None:intergenic 40.0%
CTTCCTAGTTCAGACATCAA+AGG - chr6_4:7450564-7450583 None:intergenic 40.0%
CTTCCTTTCGAATTCAGAAG+TGG - chr6_4:7451020-7451039 None:intergenic 40.0%
GCCTGTCTGAGTAAATATTG+CGG - chr6_4:7451060-7451079 None:intergenic 40.0%
ACAGGCAAGTTTCTTTCATG+TGG + chr6_4:7451074-7451093 Msa0974410:intron 40.0%
! GTTCCTCAGTTGATTCAGTT+TGG + chr6_4:7451238-7451257 Msa0974410:CDS 40.0%
ATAGCACACAATAGGTGTGT+GGG - chr6_4:7451344-7451363 None:intergenic 40.0%
TGTTAGAGCTGGATTGAATG+TGG + chr6_4:7451442-7451461 Msa0974410:CDS 40.0%
! AATAGTCTTGCTGCCAAAGT+AGG + chr6_4:7451635-7451654 Msa0974410:CDS 40.0%
AGTGGGATTTAGTCCTACTT+TGG - chr6_4:7451651-7451670 None:intergenic 40.0%
CTGCAATGATGATATCTCCA+AGG - chr6_4:7451700-7451719 None:intergenic 40.0%
! AGGAGAGTTGTTGAAGGTAT+TGG + chr6_4:7452223-7452242 Msa0974410:CDS 40.0%
! ATGAATAAGTGGGGTGTTCA+GGG - chr6_4:7452504-7452523 None:intergenic 40.0%
! AATGAATAAGTGGGGTGTTC+AGG - chr6_4:7452505-7452524 None:intergenic 40.0%
GGCATCATGATTGCAAAGAG+AGG - chr6_4:7446442-7446461 None:intergenic 45.0%
TAGTTTCTCGAGACGTCACT+TGG + chr6_4:7447112-7447131 Msa0974410:intron 45.0%
ACCAAAGACCACGAGATTGA+GGG - chr6_4:7447150-7447169 None:intergenic 45.0%
AACCAAAGACCACGAGATTG+AGG - chr6_4:7447151-7447170 None:intergenic 45.0%
! CATTAACACGCGTCTTGTTG+GGG - chr6_4:7447949-7447968 None:intergenic 45.0%
! CCATTAACACGCGTCTTGTT+GGG - chr6_4:7447950-7447969 None:intergenic 45.0%
!! TATACTTGGTGCGTGCTATG+GGG - chr6_4:7448328-7448347 None:intergenic 45.0%
AACGTCTGTGTTGTCAACCA+CGG - chr6_4:7448624-7448643 None:intergenic 45.0%
TGGTAGAGCGATAAGAGTTC+TGG + chr6_4:7448672-7448691 Msa0974410:intron 45.0%
AGTTGAAAGCTTACCTCTGC+AGG - chr6_4:7448894-7448913 None:intergenic 45.0%
AATGGACAAAAAGAGGAGGC+TGG - chr6_4:7448917-7448936 None:intergenic 45.0%
CCACACCAGTCACATTAAGT+TGG - chr6_4:7449373-7449392 None:intergenic 45.0%
CCAACTTAATGTGACTGGTG+TGG + chr6_4:7449370-7449389 Msa0974410:intron 45.0%
TAATGTGACTGGTGTGGTTG+AGG + chr6_4:7449376-7449395 Msa0974410:intron 45.0%
ATTCCTGAAGGAAATGGCTC+TGG + chr6_4:7449522-7449541 Msa0974410:CDS 45.0%
!! GAAATGGCTCTGGAGTAGTT+TGG + chr6_4:7449532-7449551 Msa0974410:CDS 45.0%
! TGGAGTAGTTTGGGATGAAG+AGG + chr6_4:7449542-7449561 Msa0974410:CDS 45.0%
! GGAGTAGTTTGGGATGAAGA+GGG + chr6_4:7449543-7449562 Msa0974410:CDS 45.0%
! GCCTATGGAAAGTGTACGAA+AGG - chr6_4:7450121-7450140 None:intergenic 45.0%
AGGGTGTGATCAAATCCGAA+TGG - chr6_4:7450422-7450441 None:intergenic 45.0%
TTTGATCACACCCTCACAGT+TGG + chr6_4:7450428-7450447 Msa0974410:CDS 45.0%
CACTGATAACACCAACTGTG+AGG - chr6_4:7450442-7450461 None:intergenic 45.0%
!! CTCACAGTTGGTGTTATCAG+TGG + chr6_4:7450440-7450459 Msa0974410:CDS 45.0%
ACTGGTGTAACAATTGGAGG+TGG + chr6_4:7450488-7450507 Msa0974410:CDS 45.0%
ACTGATGCAGCCATAAATCC+CGG + chr6_4:7450518-7450537 Msa0974410:CDS 45.0%
TCACCTGTTTCCGGGATTTA+TGG - chr6_4:7450531-7450550 None:intergenic 45.0%
AGCTTCATGTCACCTGTTTC+CGG - chr6_4:7450540-7450559 None:intergenic 45.0%
CTCCCTTTGATGTCTGAACT+AGG + chr6_4:7450558-7450577 Msa0974410:intron 45.0%
!!! GCCGCTTCCATTAGTTTTCT+TGG + chr6_4:7450769-7450788 Msa0974410:intron 45.0%
TAGTGTGACTCTAATAGCGG+AGG + chr6_4:7450993-7451012 Msa0974410:intron 45.0%
GGTCCACTTCTGAATTCGAA+AGG + chr6_4:7451014-7451033 Msa0974410:CDS 45.0%
GCCGCAATATTTACTCAGAC+AGG + chr6_4:7451056-7451075 Msa0974410:CDS 45.0%
ACGTACGGTTGAAGATGGAA+TGG - chr6_4:7451212-7451231 None:intergenic 45.0%
ATTCGACGTACGGTTGAAGA+TGG - chr6_4:7451217-7451236 None:intergenic 45.0%
CATAGCACACAATAGGTGTG+TGG - chr6_4:7451345-7451364 None:intergenic 45.0%
CTGTAACAAAGAAGGCTCAC+AGG - chr6_4:7451734-7451753 None:intergenic 45.0%
TCTTGGTAGGTCAAAAGCAG+AGG + chr6_4:7452203-7452222 Msa0974410:intron 45.0%
AAGCAGAGGAGAGTTGTTGA+AGG + chr6_4:7452217-7452236 Msa0974410:CDS 45.0%
TCAGAGGGGTGATGAAAAGT+TGG + chr6_4:7452283-7452302 Msa0974410:CDS 45.0%
TGAAAAGTTGGAGCTGTCTG+TGG + chr6_4:7452295-7452314 Msa0974410:CDS 45.0%
!!! TTTAATTAATTTGAAAATTT+TGG + chr6_4:7452175-7452194 Msa0974410:intron 5.0%
CCAAAGACCACGAGATTGAG+GGG - chr6_4:7447149-7447168 None:intergenic 50.0%
GAACTTGGGCCCCTTTGAAT+TGG - chr6_4:7447652-7447671 None:intergenic 50.0%
CCCAACAAGACGCGTGTTAA+TGG + chr6_4:7447947-7447966 Msa0974410:CDS 50.0%
GCCATTAACACGCGTCTTGT+TGG - chr6_4:7447951-7447970 None:intergenic 50.0%
!! AATCGCTTGGTGCGTGCTAT+GGG - chr6_4:7448299-7448318 None:intergenic 50.0%
!! AAATCGCTTGGTGCGTGCTA+TGG - chr6_4:7448300-7448319 None:intergenic 50.0%
CTCGGAAGAAAACACAGGAG+GGG - chr6_4:7448862-7448881 None:intergenic 50.0%
GCTCGGAAGAAAACACAGGA+GGG - chr6_4:7448863-7448882 None:intergenic 50.0%
! AGTGGCTCGGAAGAAAACAC+AGG - chr6_4:7448867-7448886 None:intergenic 50.0%
CTTACCTCTGCAGGAAAGAG+TGG - chr6_4:7448885-7448904 None:intergenic 50.0%
CGTCCCCAACTTAATGTGAC+TGG + chr6_4:7449365-7449384 Msa0974410:intron 50.0%
CTGGTGTGGTTGAGGTAACA+TGG + chr6_4:7449384-7449403 Msa0974410:intron 50.0%
ACTCCAGAGCCATTTCCTTC+AGG - chr6_4:7449528-7449547 None:intergenic 50.0%
CTTTCGAGAAACCCAAGCTC+TGG + chr6_4:7449715-7449734 Msa0974410:CDS 50.0%
! ATTCTAGCATCGGAAGGGTG+AGG + chr6_4:7449760-7449779 Msa0974410:intron 50.0%
! ATTACAGGTTGACGCCCCTA+AGG + chr6_4:7450322-7450341 Msa0974410:intron 50.0%
! GAGTCGTCGTCTCTGAAAGT+CGG + chr6_4:7450371-7450390 Msa0974410:CDS 50.0%
! AGTCGTCGTCTCTGAAAGTC+GGG + chr6_4:7450372-7450391 Msa0974410:CDS 50.0%
GAAAGTCGGGCAGCAATGTT+TGG + chr6_4:7450385-7450404 Msa0974410:CDS 50.0%
CAGCCATAAATCCCGGAAAC+AGG + chr6_4:7450525-7450544 Msa0974410:CDS 50.0%
GCTTCATGTCACCTGTTTCC+GGG - chr6_4:7450539-7450558 None:intergenic 50.0%
CAATAGACTTGGACCCTGCT+TGG + chr6_4:7450632-7450651 Msa0974410:intron 50.0%
GGTATTGCAGGAACTTCAGC+TGG + chr6_4:7451175-7451194 Msa0974410:CDS 50.0%
CTGAGGAACGATTCGACGTA+CGG - chr6_4:7451227-7451246 None:intergenic 50.0%
GGACTAAATCCCACTGCAAG+AGG + chr6_4:7451656-7451675 Msa0974410:CDS 50.0%
CGTATCACCCCTCAATCTCG+TGG + chr6_4:7447139-7447158 Msa0974410:intron 55.0%
CCCCTCAATCTCGTGGTCTT+TGG + chr6_4:7447146-7447165 Msa0974410:intron 55.0%
!! ATCGCTTGGTGCGTGCTATG+GGG - chr6_4:7448298-7448317 None:intergenic 55.0%
GGCTCGGAAGAAAACACAGG+AGG - chr6_4:7448864-7448883 None:intergenic 55.0%
CTCTGCAGGAAAGAGTGGCT+CGG - chr6_4:7448880-7448899 None:intergenic 55.0%
! GAGAAACCCAAGCTCTGGTC+AGG + chr6_4:7449720-7449739 Msa0974410:CDS 55.0%
CAACGACCTGACCAGAGCTT+GGG - chr6_4:7449729-7449748 None:intergenic 55.0%
GACGACTCCCCCACATTGAT+TGG - chr6_4:7450359-7450378 None:intergenic 55.0%
GGGCAGCAATGTTTGGCGAT+TGG + chr6_4:7450392-7450411 Msa0974410:CDS 55.0%
GCAGGAACTTCAGCTGGTGT+AGG + chr6_4:7451181-7451200 Msa0974410:CDS 55.0%
CCAGCAAAGCCTCTTGCAGT+GGG - chr6_4:7451668-7451687 None:intergenic 55.0%
ACCAGCAAAGCCTCTTGCAG+TGG - chr6_4:7451669-7451688 None:intergenic 55.0%
GGAGCTGTCTGTGGTACTTG+AGG + chr6_4:7452304-7452323 Msa0974410:CDS 55.0%
CGAGCCACTCTTTCCTGCAG+AGG + chr6_4:7448878-7448897 Msa0974410:CDS 60.0%
GCAACGACCTGACCAGAGCT+TGG - chr6_4:7449730-7449749 None:intergenic 60.0%
CATCGGAAGGGTGAGGCTGA+AGG + chr6_4:7449767-7449786 Msa0974410:intron 60.0%
CCCACTGCAAGAGGCTTTGC+TGG + chr6_4:7451665-7451684 Msa0974410:CDS 60.0%
Chromosome Type Strat End Strand Name
chr6_4 gene 7446236 7452587 7446236 ID=Msa0974410;Name=Msa0974410
chr6_4 mRNA 7446236 7452587 7446236 ID=Msa0974410-mRNA-1;Parent=Msa0974410;Name=Msa0974410-mRNA-1;_AED=0.24;_eAED=0.24;_QI=94|0.58|0.61|0.92|0.75|0.69|13|247|432
chr6_4 exon 7446236 7446496 7446236 ID=Msa0974410-mRNA-1:exon:2884;Parent=Msa0974410-mRNA-1
chr6_4 exon 7447890 7448017 7447890 ID=Msa0974410-mRNA-1:exon:2885;Parent=Msa0974410-mRNA-1
chr6_4 exon 7448817 7448899 7448817 ID=Msa0974410-mRNA-1:exon:2886;Parent=Msa0974410-mRNA-1
chr6_4 exon 7449522 7449588 7449522 ID=Msa0974410-mRNA-1:exon:2887;Parent=Msa0974410-mRNA-1
chr6_4 exon 7449701 7449776 7449701 ID=Msa0974410-mRNA-1:exon:2888;Parent=Msa0974410-mRNA-1
chr6_4 exon 7449868 7449938 7449868 ID=Msa0974410-mRNA-1:exon:2889;Parent=Msa0974410-mRNA-1
chr6_4 exon 7450116 7450123 7450116 ID=Msa0974410-mRNA-1:exon:2890;Parent=Msa0974410-mRNA-1
chr6_4 exon 7450329 7450546 7450329 ID=Msa0974410-mRNA-1:exon:2891;Parent=Msa0974410-mRNA-1
chr6_4 exon 7451010 7451081 7451010 ID=Msa0974410-mRNA-1:exon:2892;Parent=Msa0974410-mRNA-1
chr6_4 exon 7451141 7451264 7451141 ID=Msa0974410-mRNA-1:exon:2893;Parent=Msa0974410-mRNA-1
chr6_4 exon 7451440 7451526 7451440 ID=Msa0974410-mRNA-1:exon:2894;Parent=Msa0974410-mRNA-1
chr6_4 exon 7451626 7451694 7451626 ID=Msa0974410-mRNA-1:exon:2895;Parent=Msa0974410-mRNA-1
chr6_4 exon 7452212 7452587 7452212 ID=Msa0974410-mRNA-1:exon:2896;Parent=Msa0974410-mRNA-1
chr6_4 five_prime_UTR 7446236 7446329 7446236 ID=Msa0974410-mRNA-1:five_prime_utr;Parent=Msa0974410-mRNA-1
chr6_4 CDS 7446330 7446496 7446330 ID=Msa0974410-mRNA-1:cds;Parent=Msa0974410-mRNA-1
chr6_4 CDS 7447890 7448017 7447890 ID=Msa0974410-mRNA-1:cds;Parent=Msa0974410-mRNA-1
chr6_4 CDS 7448817 7448899 7448817 ID=Msa0974410-mRNA-1:cds;Parent=Msa0974410-mRNA-1
chr6_4 CDS 7449522 7449588 7449522 ID=Msa0974410-mRNA-1:cds;Parent=Msa0974410-mRNA-1
chr6_4 CDS 7449701 7449776 7449701 ID=Msa0974410-mRNA-1:cds;Parent=Msa0974410-mRNA-1
chr6_4 CDS 7449868 7449938 7449868 ID=Msa0974410-mRNA-1:cds;Parent=Msa0974410-mRNA-1
chr6_4 CDS 7450116 7450123 7450116 ID=Msa0974410-mRNA-1:cds;Parent=Msa0974410-mRNA-1
chr6_4 CDS 7450329 7450546 7450329 ID=Msa0974410-mRNA-1:cds;Parent=Msa0974410-mRNA-1
chr6_4 CDS 7451010 7451081 7451010 ID=Msa0974410-mRNA-1:cds;Parent=Msa0974410-mRNA-1
chr6_4 CDS 7451141 7451264 7451141 ID=Msa0974410-mRNA-1:cds;Parent=Msa0974410-mRNA-1
chr6_4 CDS 7451440 7451526 7451440 ID=Msa0974410-mRNA-1:cds;Parent=Msa0974410-mRNA-1
chr6_4 CDS 7451626 7451694 7451626 ID=Msa0974410-mRNA-1:cds;Parent=Msa0974410-mRNA-1
chr6_4 CDS 7452212 7452340 7452212 ID=Msa0974410-mRNA-1:cds;Parent=Msa0974410-mRNA-1
chr6_4 three_prime_UTR 7452341 7452587 7452341 ID=Msa0974410-mRNA-1:three_prime_utr;Parent=Msa0974410-mRNA-1
Gene Sequence

>Msa0974410

ATGCAAGTAGTATCAGCATGCAACAATATGTGGTGTATGTCAATGCTGCCAACAGTTCCTCACAAAAGCATCAACAGTGTTCTAAGCCGCCGTGAGATTTGCATATCTTCCTCTCTTTGCAATCATGATGCCCTTCCTCCTCAACTACCTATTTCCATTTCAACAAGGACTGTTCAAGATGAAACTCAGGATTCTGGTAACATGATAAGGAAGGTTATTGTGTCCCCAACAAGACGCGTGTTAATGGCGAGTTTGACTTTGTATTCCTCTTTCTGTTCTTCAAGGTACTTGTCAGCACTAGCATTGGGAGATACATCAGTGACAATTGAAGAAGTGACCCCTCCTGTGTTTTCTTCCGAGCCACTCTTTCCTGCAGAGATTCCTGAAGGAAATGGCTCTGGAGTAGTTTGGGATGAAGAGGGCCACATTGTGACAAATTATCATGTAATTGGCAATGCGCTTTCGAGAAACCCAAGCTCTGGTCAGGTCGTTGCGCGAATTAATATTCTAGCATCGGAAGGGGTAATAAAGAATTTTGAAGGTATACTCATTGGAGCTGATCGTTTAAAGGATCTAGCTGTCTTGAAGGCATATCCTTTCGTTGACGCCCCTAAGGAAATTTTAAAGCCAATCAATGTGGGGGAGTCGTCGTCTCTGAAAGTCGGGCAGCAATGTTTGGCGATTGGAAATCCATTCGGATTTGATCACACCCTCACAGTTGGTGTTATCAGTGGTCTTAACCGAGATATCTTTAGTAAAACTGGTGTAACAATTGGAGGTGGTATTCAAACTGATGCAGCCATAAATCCCGGAAACAGCGGAGGTCCACTTCTGAATTCGAAAGGAAGCTTAATTGGGATCAATGCCGCAATATTTACTCAGACAGGCAATTTTGTATGCCTTACTTTTATTGTTGTTTTTCTTGGTATTGCAGGAACTTCAGCTGGTGTAGGATTTGCCATTCCATCTTCAACCGTACGTCGAATCGTTCCTCAGTTGATTCAGTTTGGAAAAGTTGTTAGAGCTGGATTGAATGTGGATATTGCTCCAGACTTGATTGCAAATCAACTTAACGTTCGAAATGGAGCTCTTATTCTTACGGTTCCAAAAAATAGTCTTGCTGCCAAAGTAGGACTAAATCCCACTGCAAGAGGCTTTGCTGGTAATATAGTCAAAAGCAGAGGAGAGTTGTTGAAGGTATTGGATGAGTATAATGTAGGAGAAAAAGTAATGTTGTTGATTCAGAGGGGTGATGAAAAGTTGGAGCTGTCTGTGGTACTTGAGGAACAGAGTTCTTGA

Protein sequence

>Msa0974410

MQVVSACNNMWCMSMLPTVPHKSINSVLSRREICISSSLCNHDALPPQLPISISTRTVQDETQDSGNMIRKVIVSPTRRVLMASLTLYSSFCSSRYLSALALGDTSVTIEEVTPPVFSSEPLFPAEIPEGNGSGVVWDEEGHIVTNYHVIGNALSRNPSSGQVVARINILASEGVIKNFEGILIGADRLKDLAVLKAYPFVDAPKEILKPINVGESSSLKVGQQCLAIGNPFGFDHTLTVGVISGLNRDIFSKTGVTIGGGIQTDAAINPGNSGGPLLNSKGSLIGINAAIFTQTGNFVCLTFIVVFLGIAGTSAGVGFAIPSSTVRRIVPQLIQFGKVVRAGLNVDIAPDLIANQLNVRNGALILTVPKNSLAAKVGLNPTARGFAGNIVKSRGELLKVLDEYNVGEKVMLLIQRGDEKLELSVVLEEQSS*