AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0336550


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0336550 MtrunA17_Chr2g0322921 97.854 233 5 0 1 233 1 233 1.93e-169 466
Msa0336550 MtrunA17_Chr7g0250121 42.211 199 100 3 25 222 10 194 2.07e-53 171
Msa0336550 MtrunA17_Chr8g0335971 42.211 199 98 2 25 222 9 191 4.79e-51 164
Msa0336550 MtrunA17_Chr7g0259831 43.781 201 97 3 23 223 28 212 5.80e-47 154
Msa0336550 MtrunA17_Chr7g0231431 43.333 180 93 2 26 205 29 199 1.11e-46 154
Msa0336550 MtrunA17_Chr4g0012811 42.623 183 94 3 24 205 27 199 9.35e-36 126
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0336550 AT3G21870.1 65.025 203 51 4 16 209 12 203 5.53e-75 226
Msa0336550 AT2G44740.1 49.686 159 79 1 34 192 8 165 2.58e-50 163
Msa0336550 AT3G63120.2 53.676 136 59 2 67 202 61 192 3.88e-47 155
Msa0336550 AT3G63120.1 53.676 136 59 2 67 202 61 192 3.88e-47 155
Msa0336550 AT3G05327.1 40.341 176 88 3 20 190 25 188 6.08e-43 144
Msa0336550 AT2G45080.1 41.436 181 93 3 25 205 27 194 2.53e-42 143
Msa0336550 AT3G60550.1 40.299 201 104 5 5 205 16 200 5.89e-42 142
Msa0336550 AT5G61650.1 39.109 202 101 4 12 211 9 190 3.12e-41 140
Msa0336550 AT5G07450.1 40.000 170 90 2 25 194 20 177 6.66e-40 137

Find 90 sgRNAs with CRISPR-Local

Find 243 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTCTTTCTGTTGTCAATTT+TGG 0.004375 2_4:-55981591 Msa0336550:three_prime_UTR
GATACGAACTTTGTCAAATT+TGG 0.168594 2_4:-55981473 Msa0336550:three_prime_UTR
CTTCATGGCTAAGCAATTAT+TGG 0.188133 2_4:-55981536 Msa0336550:three_prime_UTR
ATTTCAGTCTCAAAAGATTT+TGG 0.218198 2_4:+55981684 None:intergenic
CCACCTCCAATTGTGGATTA+TGG 0.232331 2_4:-55981633 Msa0336550:CDS
CGGCAGAATCAGCCGGTAAC+AGG 0.242921 2_4:-55982703 Msa0336550:CDS
AAGCCACTAATATTATTTAA+AGG 0.245893 2_4:+55982921 None:intergenic
CTCACTTGCTGTTAACATTT+AGG 0.270807 2_4:+55982741 None:intergenic
TTCCATCTCTGCATGTTATC+TGG 0.284086 2_4:+55982846 None:intergenic
GAAAAGGTGATGCTTGTAAA+TGG 0.293233 2_4:-55981738 Msa0336550:CDS
TATTCATATAAATAAGAAAA+TGG 0.307247 2_4:+55981501 None:intergenic
AGCTCGGCAGGCCCTGTTAC+CGG 0.321332 2_4:+55982691 None:intergenic
TATTCAGCTTATCCAGTTCC+TGG 0.321877 2_4:+55982584 None:intergenic
AGCCACTAATATTATTTAAA+GGG 0.325528 2_4:+55982922 None:intergenic
TACTTAGGTATGCTTATTCC+TGG 0.349163 2_4:+55982508 None:intergenic
ATTTGCTATTTGAATGGTTA+AGG 0.353311 2_4:+55982817 None:intergenic
CTCTGCATGTTATCTGGTTT+AGG 0.359379 2_4:+55982852 None:intergenic
AATAATGGCACAGTAAGATT+AGG 0.366725 2_4:-55982565 Msa0336550:CDS
GCAATTATTGGATTGTTCAT+TGG 0.367010 2_4:-55981524 Msa0336550:three_prime_UTR
AAGGACAAGACTAGAGAATC+AGG 0.374269 2_4:+55982397 None:intergenic
CTCCAAGAATAACAAGCTTT+AGG 0.381462 2_4:+55981395 None:intergenic
GCGAGCCACCAGCTTCTCTA+AGG 0.404470 2_4:+55982633 None:intergenic
GGTGGTTTCAGTTTCACCCT+GGG 0.410600 2_4:+55982771 None:intergenic
TGTTAACATTTAGGCCATCT+TGG 0.425164 2_4:+55982750 None:intergenic
GCTCATATTTGCTATTTGAA+TGG 0.426866 2_4:+55982811 None:intergenic
GAACTGGATAAGCTGAATAA+TGG 0.429459 2_4:-55982580 Msa0336550:CDS
GTCTTCCACCTTAGAGAAGC+TGG 0.436418 2_4:-55982641 Msa0336550:CDS
GACAGGATCCACAGCACTCT+TGG 0.440490 2_4:+55982661 None:intergenic
CCGGCTGATTCTGCCGGCTA+TGG 0.443270 2_4:+55982710 None:intergenic
GTCAGTCCATAATCCACAAT+TGG 0.446292 2_4:+55981627 None:intergenic
TAGCAACCTGTGCACATTCA+AGG 0.446626 2_4:+55982378 None:intergenic
ATAATGGCACAGTAAGATTA+GGG 0.454796 2_4:-55982564 Msa0336550:CDS
ATCTGCAAGTTCAACTCCCC+AGG 0.462607 2_4:-55982788 Msa0336550:five_prime_UTR
TTACTGTTTGCACTTAGAAA+AGG 0.462960 2_4:-55981754 Msa0336550:CDS
CGTGCGCAAAACAAAATAAG+AGG 0.465273 2_4:+55983032 None:intergenic
TGGTGGTTTCAGTTTCACCC+TGG 0.468050 2_4:+55982770 None:intergenic
CTTGGCAAGTTTAGCTCGGC+AGG 0.469634 2_4:+55982679 None:intergenic
CTCTTCCCCACCTCCAATTG+TGG 0.470595 2_4:-55981640 Msa0336550:CDS
AGATGAGCTGAACCAGGAAC+TGG 0.473686 2_4:-55982596 Msa0336550:CDS
TCACTCATCATCTAGCATCT+TGG 0.474488 2_4:+55982333 None:intergenic
GTATATTCTCAGTAATGGCT+TGG 0.475056 2_4:-55982978 Msa0336550:five_prime_UTR
GTGATGCTTGTAAATGGAAC+TGG 0.476530 2_4:-55981732 Msa0336550:CDS
CAACTGTATATTCTCAGTAA+TGG 0.483096 2_4:-55982983 Msa0336550:five_prime_UTR
CTGTTACCGGCTGATTCTGC+CGG 0.485975 2_4:+55982704 None:intergenic
TTGGCAACAGCAACTTGGCT+TGG 0.497654 2_4:+55983003 None:intergenic
AATAAGCATACCTAAGTACT+TGG 0.500784 2_4:-55982503 Msa0336550:CDS
CAATGCTGAATTGAACAAGC+TGG 0.503751 2_4:-55981838 Msa0336550:CDS
GTGAGTACAGCAACCATAGC+CGG 0.507563 2_4:-55982723 Msa0336550:CDS
TTTCACGGCGTAAGAGCACC+AGG 0.511343 2_4:-55982526 Msa0336550:CDS
TATATCCTCTCCAAGTACTT+AGG 0.518675 2_4:+55982493 None:intergenic
GCTTCTCTAAGGTGGAAGAC+AGG 0.527781 2_4:+55982644 None:intergenic
TACAGTTGGCAACAGCAACT+TGG 0.532604 2_4:+55982998 None:intergenic
AAGAGCTTGAATTTGTTTCA+CGG 0.533289 2_4:-55982541 Msa0336550:CDS
CCATAATCCACAATTGGAGG+TGG 0.534813 2_4:+55981633 None:intergenic
GCCACTAATATTATTTAAAG+GGG 0.538210 2_4:+55982923 None:intergenic
TAACATTTAGGCCATCTTGG+TGG 0.539033 2_4:+55982753 None:intergenic
GAGAAGGACTAAACAGGCCA+AGG 0.541366 2_4:+55981564 None:intergenic
GCGGTATATGCTCGAGTAGG+AGG 0.541871 2_4:-55981867 Msa0336550:CDS
TCTTGTCCTTGAATGTGCAC+AGG 0.542755 2_4:-55982384 Msa0336550:CDS
CACTCTTGGCAAGTTTAGCT+CGG 0.548577 2_4:+55982675 None:intergenic
CCATAGCCGGCAGAATCAGC+CGG 0.548917 2_4:-55982710 Msa0336550:CDS
CGGTATATGCTCGAGTAGGA+GGG 0.551367 2_4:-55981866 Msa0336550:CDS
TAGCCAACCACAAAACATGA+TGG 0.554883 2_4:+55982451 None:intergenic
AACCAGATAACATGCAGAGA+TGG 0.558467 2_4:-55982848 Msa0336550:five_prime_UTR
AGCCACCAGCTTCTCTAAGG+TGG 0.562842 2_4:+55982636 None:intergenic
TGTTATCTGGTTTAGGTGTG+TGG 0.564260 2_4:+55982859 None:intergenic
GGCAGAATCAGCCGGTAACA+GGG 0.571866 2_4:-55982702 Msa0336550:CDS
TAAGACAAATCACAAAGATG+TGG 0.575327 2_4:-55982949 Msa0336550:five_prime_UTR
GAACTGGCTTGAAGATTGAA+AGG 0.577156 2_4:-55981716 Msa0336550:CDS
CATAATCCACAATTGGAGGT+GGG 0.587923 2_4:+55981634 None:intergenic
ATAATCCACAATTGGAGGTG+GGG 0.591202 2_4:+55981635 None:intergenic
ACTAGTAGATGAGCTGAACC+AGG 0.595950 2_4:-55982602 Msa0336550:CDS
GTTGCTAGTTACCAGTGTCA+TGG 0.598576 2_4:-55982362 Msa0336550:CDS
AGCCAACCACAAAACATGAT+GGG 0.609259 2_4:+55982452 None:intergenic
TGAAACTGAAACCACCAAGA+TGG 0.611290 2_4:-55982764 Msa0336550:five_prime_UTR
CATTACTGAGAATATACAGT+TGG 0.613107 2_4:+55982984 None:intergenic
GTGGTTTCAGTTTCACCCTG+GGG 0.613967 2_4:+55982772 None:intergenic
CTTGGAAGCAACCATGACAC+TGG 0.617633 2_4:+55982351 None:intergenic
AGTCCATAATCCACAATTGG+AGG 0.620702 2_4:+55981630 None:intergenic
AAGACAAATCACAAAGATGT+GGG 0.622862 2_4:-55982948 Msa0336550:five_prime_UTR
AGAAGGACTAAACAGGCCAA+GGG 0.627699 2_4:+55981565 None:intergenic
CCACTAATATTATTTAAAGG+GGG 0.648222 2_4:+55982924 None:intergenic
GCATACCTAAGTACTTGGAG+AGG 0.659601 2_4:-55982498 Msa0336550:CDS
AGGACAAGACTAGAGAATCA+GGG 0.662861 2_4:+55982398 None:intergenic
TCTGCAAGTTCAACTCCCCA+GGG 0.663591 2_4:-55982787 Msa0336550:five_prime_UTR
GGTATATGCTCGAGTAGGAG+GGG 0.673849 2_4:-55981865 Msa0336550:CDS
TTCCACCTTAGAGAAGCTGG+TGG 0.676985 2_4:-55982638 Msa0336550:CDS
TAAACTTGCCAAGAGTGCTG+TGG 0.680744 2_4:-55982669 Msa0336550:CDS
AACGCGGTATATGCTCGAGT+AGG 0.690253 2_4:-55981870 Msa0336550:CDS
CTGTAGACATTATAACAACG+CGG 0.751948 2_4:-55981886 Msa0336550:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATTCATATAAATAAGAAAA+TGG + chr2_4:55982945-55982964 None:intergenic 10.0%
!! TATTCATATAAATAAGAAAA+TGG + chr2_4:55982945-55982964 None:intergenic 10.0%
!! ATAGTTTATACATAAAAACT+TGG - chr2_4:55982409-55982428 Msa0336550:CDS 15.0%
!! ATAGTTTATACATAAAAACT+TGG - chr2_4:55982409-55982428 Msa0336550:CDS 15.0%
!! AGCCACTAATATTATTTAAA+GGG + chr2_4:55981524-55981543 None:intergenic 20.0%
!! AAGCCACTAATATTATTTAA+AGG + chr2_4:55981525-55981544 None:intergenic 20.0%
!!! ATGTTTTATTGCACTATTAA+AGG - chr2_4:55982167-55982186 Msa0336550:intron 20.0%
!!! AATTGTTTTTTAAGCTATCA+TGG + chr2_4:55982339-55982358 None:intergenic 20.0%
!! CTTAATTAAGCTATTTATCA+AGG - chr2_4:55982441-55982460 Msa0336550:CDS 20.0%
!! TAAAACTAACCATACTTAAA+AGG + chr2_4:55982467-55982486 None:intergenic 20.0%
!!! TCTGTTAGATTTTAAAGTTA+TGG - chr2_4:55982644-55982663 Msa0336550:CDS 20.0%
!! AGCCACTAATATTATTTAAA+GGG + chr2_4:55981524-55981543 None:intergenic 20.0%
!! AAGCCACTAATATTATTTAA+AGG + chr2_4:55981525-55981544 None:intergenic 20.0%
!!! ATGTTTTATTGCACTATTAA+AGG - chr2_4:55982167-55982186 Msa0336550:intron 20.0%
!!! AATTGTTTTTTAAGCTATCA+TGG + chr2_4:55982339-55982358 None:intergenic 20.0%
!! CTTAATTAAGCTATTTATCA+AGG - chr2_4:55982441-55982460 Msa0336550:CDS 20.0%
!! TAAAACTAACCATACTTAAA+AGG + chr2_4:55982467-55982486 None:intergenic 20.0%
!!! TCTGTTAGATTTTAAAGTTA+TGG - chr2_4:55982644-55982663 Msa0336550:CDS 20.0%
! CCACTAATATTATTTAAAGG+GGG + chr2_4:55981522-55981541 None:intergenic 25.0%
! GCCACTAATATTATTTAAAG+GGG + chr2_4:55981523-55981542 None:intergenic 25.0%
!!! ATTTGCTATTTGAATGGTTA+AGG + chr2_4:55981629-55981648 None:intergenic 25.0%
! GCAATAAAACATTAAGCTTT+AGG + chr2_4:55982159-55982178 None:intergenic 25.0%
! AATAAGCACAAAACAACTTA+TGG + chr2_4:55982304-55982323 None:intergenic 25.0%
!! ATTTCAGTCTCAAAAGATTT+TGG + chr2_4:55982762-55982781 None:intergenic 25.0%
!! TTTCTTTCTGTTGTCAATTT+TGG - chr2_4:55982852-55982871 Msa0336550:five_prime_UTR 25.0%
!! TTCTTTCTGTTGTCAATTTT+GGG - chr2_4:55982853-55982872 Msa0336550:five_prime_UTR 25.0%
!!! ATTTTTCCTAAAGCTTGTTA+TGG - chr2_4:55983042-55983061 Msa0336550:five_prime_UTR 25.0%
! CCACTAATATTATTTAAAGG+GGG + chr2_4:55981522-55981541 None:intergenic 25.0%
! GCCACTAATATTATTTAAAG+GGG + chr2_4:55981523-55981542 None:intergenic 25.0%
!!! ATTTGCTATTTGAATGGTTA+AGG + chr2_4:55981629-55981648 None:intergenic 25.0%
! GCAATAAAACATTAAGCTTT+AGG + chr2_4:55982159-55982178 None:intergenic 25.0%
! AATAAGCACAAAACAACTTA+TGG + chr2_4:55982304-55982323 None:intergenic 25.0%
!! ATTTCAGTCTCAAAAGATTT+TGG + chr2_4:55982762-55982781 None:intergenic 25.0%
!! TTTCTTTCTGTTGTCAATTT+TGG - chr2_4:55982852-55982871 Msa0336550:five_prime_UTR 25.0%
!! TTCTTTCTGTTGTCAATTTT+GGG - chr2_4:55982853-55982872 Msa0336550:five_prime_UTR 25.0%
CATTACTGAGAATATACAGT+TGG + chr2_4:55981462-55981481 None:intergenic 30.0%
CAACTGTATATTCTCAGTAA+TGG - chr2_4:55981460-55981479 Msa0336550:three_prime_UTR 30.0%
TAAGACAAATCACAAAGATG+TGG - chr2_4:55981494-55981513 Msa0336550:three_prime_UTR 30.0%
AAGACAAATCACAAAGATGT+GGG - chr2_4:55981495-55981514 Msa0336550:three_prime_UTR 30.0%
CCCCCTTTAAATAATATTAG+TGG - chr2_4:55981519-55981538 Msa0336550:three_prime_UTR 30.0%
!! GCTCATATTTGCTATTTGAA+TGG + chr2_4:55981635-55981654 None:intergenic 30.0%
AATAATGGCACAGTAAGATT+AGG - chr2_4:55981878-55981897 Msa0336550:CDS 30.0%
ATAATGGCACAGTAAGATTA+GGG - chr2_4:55981879-55981898 Msa0336550:CDS 30.0%
! AAGAGCTTGAATTTGTTTCA+CGG - chr2_4:55981902-55981921 Msa0336550:intron 30.0%
AATAAGCATACCTAAGTACT+TGG - chr2_4:55981940-55981959 Msa0336550:intron 30.0%
!! AGCTTTAGGAGAAGTAAAAT+GGG + chr2_4:55982145-55982164 None:intergenic 30.0%
!! AAGCTTTAGGAGAAGTAAAA+TGG + chr2_4:55982146-55982165 None:intergenic 30.0%
! AGGAACTGAAGTTGATTTAA+AGG - chr2_4:55982187-55982206 Msa0336550:intron 30.0%
! AGTTGATTTAAAGGCCTATT+TGG - chr2_4:55982196-55982215 Msa0336550:intron 30.0%
TTTATGCTAATAGACAAACC+CGG + chr2_4:55982232-55982251 None:intergenic 30.0%
!! TTATCAAGGCCTTTTAAGTA+TGG - chr2_4:55982455-55982474 Msa0336550:CDS 30.0%
ATTATGTGCATCATGTTCTT+TGG - chr2_4:55982525-55982544 Msa0336550:CDS 30.0%
TTACTGTTTGCACTTAGAAA+AGG - chr2_4:55982689-55982708 Msa0336550:CDS 30.0%
! TCTTTCTGTTGTCAATTTTG+GGG - chr2_4:55982854-55982873 Msa0336550:five_prime_UTR 30.0%
GCAATTATTGGATTGTTCAT+TGG - chr2_4:55982919-55982938 Msa0336550:five_prime_UTR 30.0%
GATACGAACTTTGTCAAATT+TGG - chr2_4:55982970-55982989 Msa0336550:five_prime_UTR 30.0%
CATTACTGAGAATATACAGT+TGG + chr2_4:55981462-55981481 None:intergenic 30.0%
CAACTGTATATTCTCAGTAA+TGG - chr2_4:55981460-55981479 Msa0336550:three_prime_UTR 30.0%
TAAGACAAATCACAAAGATG+TGG - chr2_4:55981494-55981513 Msa0336550:three_prime_UTR 30.0%
AAGACAAATCACAAAGATGT+GGG - chr2_4:55981495-55981514 Msa0336550:three_prime_UTR 30.0%
CCCCCTTTAAATAATATTAG+TGG - chr2_4:55981519-55981538 Msa0336550:three_prime_UTR 30.0%
!! GCTCATATTTGCTATTTGAA+TGG + chr2_4:55981635-55981654 None:intergenic 30.0%
AATAATGGCACAGTAAGATT+AGG - chr2_4:55981878-55981897 Msa0336550:CDS 30.0%
ATAATGGCACAGTAAGATTA+GGG - chr2_4:55981879-55981898 Msa0336550:CDS 30.0%
! AAGAGCTTGAATTTGTTTCA+CGG - chr2_4:55981902-55981921 Msa0336550:intron 30.0%
AATAAGCATACCTAAGTACT+TGG - chr2_4:55981940-55981959 Msa0336550:intron 30.0%
!! AGCTTTAGGAGAAGTAAAAT+GGG + chr2_4:55982145-55982164 None:intergenic 30.0%
!! AAGCTTTAGGAGAAGTAAAA+TGG + chr2_4:55982146-55982165 None:intergenic 30.0%
! AGGAACTGAAGTTGATTTAA+AGG - chr2_4:55982187-55982206 Msa0336550:intron 30.0%
! AGTTGATTTAAAGGCCTATT+TGG - chr2_4:55982196-55982215 Msa0336550:intron 30.0%
TTTATGCTAATAGACAAACC+CGG + chr2_4:55982232-55982251 None:intergenic 30.0%
!! TTATCAAGGCCTTTTAAGTA+TGG - chr2_4:55982455-55982474 Msa0336550:CDS 30.0%
ATTATGTGCATCATGTTCTT+TGG - chr2_4:55982525-55982544 Msa0336550:CDS 30.0%
TTACTGTTTGCACTTAGAAA+AGG - chr2_4:55982689-55982708 Msa0336550:CDS 30.0%
! TCTTTCTGTTGTCAATTTTG+GGG - chr2_4:55982854-55982873 Msa0336550:five_prime_UTR 30.0%
GCAATTATTGGATTGTTCAT+TGG - chr2_4:55982919-55982938 Msa0336550:five_prime_UTR 30.0%
GATACGAACTTTGTCAAATT+TGG - chr2_4:55982970-55982989 Msa0336550:five_prime_UTR 30.0%
GTATATTCTCAGTAATGGCT+TGG - chr2_4:55981465-55981484 Msa0336550:three_prime_UTR 35.0%
TGTTAACATTTAGGCCATCT+TGG + chr2_4:55981696-55981715 None:intergenic 35.0%
!! CTCACTTGCTGTTAACATTT+AGG + chr2_4:55981705-55981724 None:intergenic 35.0%
GAACTGGATAAGCTGAATAA+TGG - chr2_4:55981863-55981882 Msa0336550:CDS 35.0%
TACTTAGGTATGCTTATTCC+TGG + chr2_4:55981938-55981957 None:intergenic 35.0%
TATATCCTCTCCAAGTACTT+AGG + chr2_4:55981953-55981972 None:intergenic 35.0%
!! GCTTTAGGAGAAGTAAAATG+GGG + chr2_4:55982144-55982163 None:intergenic 35.0%
!! CCTATTTGGATTAGCTTATC+CGG - chr2_4:55982210-55982229 Msa0336550:intron 35.0%
!! CTATTTGGATTAGCTTATCC+GGG - chr2_4:55982211-55982230 Msa0336550:intron 35.0%
CTGTAGACATTATAACAACG+CGG - chr2_4:55982557-55982576 Msa0336550:CDS 35.0%
AGTAACTCTCAAAAACTCGA+GGG + chr2_4:55982674-55982693 None:intergenic 35.0%
GAAAAGGTGATGCTTGTAAA+TGG - chr2_4:55982705-55982724 Msa0336550:CDS 35.0%
GAAAAAGAGAAGGACTAAAC+AGG + chr2_4:55982888-55982907 None:intergenic 35.0%
! AGTCCTTCTCTTTTTCTTCA+TGG - chr2_4:55982892-55982911 Msa0336550:five_prime_UTR 35.0%
TAGCCATGAAGAAAAAGAGA+AGG + chr2_4:55982898-55982917 None:intergenic 35.0%
CTTCATGGCTAAGCAATTAT+TGG - chr2_4:55982907-55982926 Msa0336550:five_prime_UTR 35.0%
GTATATTCTCAGTAATGGCT+TGG - chr2_4:55981465-55981484 Msa0336550:three_prime_UTR 35.0%
TGTTAACATTTAGGCCATCT+TGG + chr2_4:55981696-55981715 None:intergenic 35.0%
!! CTCACTTGCTGTTAACATTT+AGG + chr2_4:55981705-55981724 None:intergenic 35.0%
GAACTGGATAAGCTGAATAA+TGG - chr2_4:55981863-55981882 Msa0336550:CDS 35.0%
TACTTAGGTATGCTTATTCC+TGG + chr2_4:55981938-55981957 None:intergenic 35.0%
TATATCCTCTCCAAGTACTT+AGG + chr2_4:55981953-55981972 None:intergenic 35.0%
!! GCTTTAGGAGAAGTAAAATG+GGG + chr2_4:55982144-55982163 None:intergenic 35.0%
!! CCTATTTGGATTAGCTTATC+CGG - chr2_4:55982210-55982229 Msa0336550:intron 35.0%
!! CTATTTGGATTAGCTTATCC+GGG - chr2_4:55982211-55982230 Msa0336550:intron 35.0%
CTGTAGACATTATAACAACG+CGG - chr2_4:55982557-55982576 Msa0336550:CDS 35.0%
AGTAACTCTCAAAAACTCGA+GGG + chr2_4:55982674-55982693 None:intergenic 35.0%
GAAAAGGTGATGCTTGTAAA+TGG - chr2_4:55982705-55982724 Msa0336550:CDS 35.0%
GAAAAAGAGAAGGACTAAAC+AGG + chr2_4:55982888-55982907 None:intergenic 35.0%
! AGTCCTTCTCTTTTTCTTCA+TGG - chr2_4:55982892-55982911 Msa0336550:five_prime_UTR 35.0%
TAGCCATGAAGAAAAAGAGA+AGG + chr2_4:55982898-55982917 None:intergenic 35.0%
CTTCATGGCTAAGCAATTAT+TGG - chr2_4:55982907-55982926 Msa0336550:five_prime_UTR 35.0%
CGTGCGCAAAACAAAATAAG+AGG + chr2_4:55981414-55981433 None:intergenic 40.0%
! TGTTATCTGGTTTAGGTGTG+TGG + chr2_4:55981587-55981606 None:intergenic 40.0%
! CTCTGCATGTTATCTGGTTT+AGG + chr2_4:55981594-55981613 None:intergenic 40.0%
AACCAGATAACATGCAGAGA+TGG - chr2_4:55981595-55981614 Msa0336550:three_prime_UTR 40.0%
TTCCATCTCTGCATGTTATC+TGG + chr2_4:55981600-55981619 None:intergenic 40.0%
TGAAACTGAAACCACCAAGA+TGG - chr2_4:55981679-55981698 Msa0336550:CDS 40.0%
TAACATTTAGGCCATCTTGG+TGG + chr2_4:55981693-55981712 None:intergenic 40.0%
TATTCAGCTTATCCAGTTCC+TGG + chr2_4:55981862-55981881 None:intergenic 40.0%
! TTGTAGCCCATCATGTTTTG+TGG - chr2_4:55981985-55982004 Msa0336550:intron 40.0%
AGCCAACCACAAAACATGAT+GGG + chr2_4:55981994-55982013 None:intergenic 40.0%
TAGCCAACCACAAAACATGA+TGG + chr2_4:55981995-55982014 None:intergenic 40.0%
AGGACAAGACTAGAGAATCA+GGG + chr2_4:55982048-55982067 None:intergenic 40.0%
AAGGACAAGACTAGAGAATC+AGG + chr2_4:55982049-55982068 None:intergenic 40.0%
TCACTCATCATCTAGCATCT+TGG + chr2_4:55982113-55982132 None:intergenic 40.0%
GGAGAAGTAAAATGGGGTTA+GGG + chr2_4:55982138-55982157 None:intergenic 40.0%
AGGAGAAGTAAAATGGGGTT+AGG + chr2_4:55982139-55982158 None:intergenic 40.0%
CCGGATAAGCTAATCCAAAT+AGG + chr2_4:55982213-55982232 None:intergenic 40.0%
CAATGCTGAATTGAACAAGC+TGG - chr2_4:55982605-55982624 Msa0336550:CDS 40.0%
CAGTAACTCTCAAAAACTCG+AGG + chr2_4:55982675-55982694 None:intergenic 40.0%
GTGATGCTTGTAAATGGAAC+TGG - chr2_4:55982711-55982730 Msa0336550:CDS 40.0%
!! GAACTGGCTTGAAGATTGAA+AGG - chr2_4:55982727-55982746 Msa0336550:CDS 40.0%
ATAATCCACAATTGGAGGTG+GGG + chr2_4:55982811-55982830 None:intergenic 40.0%
CATAATCCACAATTGGAGGT+GGG + chr2_4:55982812-55982831 None:intergenic 40.0%
AGTCCATAATCCACAATTGG+AGG + chr2_4:55982816-55982835 None:intergenic 40.0%
GTCAGTCCATAATCCACAAT+TGG + chr2_4:55982819-55982838 None:intergenic 40.0%
CGTGCGCAAAACAAAATAAG+AGG + chr2_4:55981414-55981433 None:intergenic 40.0%
! TGTTATCTGGTTTAGGTGTG+TGG + chr2_4:55981587-55981606 None:intergenic 40.0%
! CTCTGCATGTTATCTGGTTT+AGG + chr2_4:55981594-55981613 None:intergenic 40.0%
AACCAGATAACATGCAGAGA+TGG - chr2_4:55981595-55981614 Msa0336550:three_prime_UTR 40.0%
TTCCATCTCTGCATGTTATC+TGG + chr2_4:55981600-55981619 None:intergenic 40.0%
TGAAACTGAAACCACCAAGA+TGG - chr2_4:55981679-55981698 Msa0336550:CDS 40.0%
TAACATTTAGGCCATCTTGG+TGG + chr2_4:55981693-55981712 None:intergenic 40.0%
TATTCAGCTTATCCAGTTCC+TGG + chr2_4:55981862-55981881 None:intergenic 40.0%
! TTGTAGCCCATCATGTTTTG+TGG - chr2_4:55981985-55982004 Msa0336550:intron 40.0%
AGCCAACCACAAAACATGAT+GGG + chr2_4:55981994-55982013 None:intergenic 40.0%
TAGCCAACCACAAAACATGA+TGG + chr2_4:55981995-55982014 None:intergenic 40.0%
AGGACAAGACTAGAGAATCA+GGG + chr2_4:55982048-55982067 None:intergenic 40.0%
AAGGACAAGACTAGAGAATC+AGG + chr2_4:55982049-55982068 None:intergenic 40.0%
TCACTCATCATCTAGCATCT+TGG + chr2_4:55982113-55982132 None:intergenic 40.0%
GGAGAAGTAAAATGGGGTTA+GGG + chr2_4:55982138-55982157 None:intergenic 40.0%
AGGAGAAGTAAAATGGGGTT+AGG + chr2_4:55982139-55982158 None:intergenic 40.0%
CCGGATAAGCTAATCCAAAT+AGG + chr2_4:55982213-55982232 None:intergenic 40.0%
CAATGCTGAATTGAACAAGC+TGG - chr2_4:55982605-55982624 Msa0336550:CDS 40.0%
CAGTAACTCTCAAAAACTCG+AGG + chr2_4:55982675-55982694 None:intergenic 40.0%
GTGATGCTTGTAAATGGAAC+TGG - chr2_4:55982711-55982730 Msa0336550:CDS 40.0%
!! GAACTGGCTTGAAGATTGAA+AGG - chr2_4:55982727-55982746 Msa0336550:CDS 40.0%
ATAATCCACAATTGGAGGTG+GGG + chr2_4:55982811-55982830 None:intergenic 40.0%
CATAATCCACAATTGGAGGT+GGG + chr2_4:55982812-55982831 None:intergenic 40.0%
AGTCCATAATCCACAATTGG+AGG + chr2_4:55982816-55982835 None:intergenic 40.0%
GTCAGTCCATAATCCACAAT+TGG + chr2_4:55982819-55982838 None:intergenic 40.0%
TACAGTTGGCAACAGCAACT+TGG + chr2_4:55981448-55981467 None:intergenic 45.0%
CACTCTTGGCAAGTTTAGCT+CGG + chr2_4:55981771-55981790 None:intergenic 45.0%
!! TAAACTTGCCAAGAGTGCTG+TGG - chr2_4:55981774-55981793 Msa0336550:CDS 45.0%
ACTAGTAGATGAGCTGAACC+AGG - chr2_4:55981841-55981860 Msa0336550:CDS 45.0%
GCATACCTAAGTACTTGGAG+AGG - chr2_4:55981945-55981964 Msa0336550:intron 45.0%
! AGCCCATCATGTTTTGTGGT+TGG - chr2_4:55981989-55982008 Msa0336550:intron 45.0%
TCTTGTCCTTGAATGTGCAC+AGG - chr2_4:55982059-55982078 Msa0336550:intron 45.0%
TAGCAACCTGTGCACATTCA+AGG + chr2_4:55982068-55982087 None:intergenic 45.0%
GTTGCTAGTTACCAGTGTCA+TGG - chr2_4:55982081-55982100 Msa0336550:intron 45.0%
CCATAATCCACAATTGGAGG+TGG + chr2_4:55982813-55982832 None:intergenic 45.0%
! CCACCTCCAATTGTGGATTA+TGG - chr2_4:55982810-55982829 Msa0336550:five_prime_UTR 45.0%
!!! TTGTCAATTTTGGGGTCCCT+TGG - chr2_4:55982862-55982881 Msa0336550:five_prime_UTR 45.0%
AGAAGGACTAAACAGGCCAA+GGG + chr2_4:55982881-55982900 None:intergenic 45.0%
TACAGTTGGCAACAGCAACT+TGG + chr2_4:55981448-55981467 None:intergenic 45.0%
CACTCTTGGCAAGTTTAGCT+CGG + chr2_4:55981771-55981790 None:intergenic 45.0%
!! TAAACTTGCCAAGAGTGCTG+TGG - chr2_4:55981774-55981793 Msa0336550:CDS 45.0%
ACTAGTAGATGAGCTGAACC+AGG - chr2_4:55981841-55981860 Msa0336550:CDS 45.0%
GCATACCTAAGTACTTGGAG+AGG - chr2_4:55981945-55981964 Msa0336550:intron 45.0%
! AGCCCATCATGTTTTGTGGT+TGG - chr2_4:55981989-55982008 Msa0336550:intron 45.0%
TCTTGTCCTTGAATGTGCAC+AGG - chr2_4:55982059-55982078 Msa0336550:intron 45.0%
TAGCAACCTGTGCACATTCA+AGG + chr2_4:55982068-55982087 None:intergenic 45.0%
GTTGCTAGTTACCAGTGTCA+TGG - chr2_4:55982081-55982100 Msa0336550:intron 45.0%
CCATAATCCACAATTGGAGG+TGG + chr2_4:55982813-55982832 None:intergenic 45.0%
! CCACCTCCAATTGTGGATTA+TGG - chr2_4:55982810-55982829 Msa0336550:five_prime_UTR 45.0%
!!! TTGTCAATTTTGGGGTCCCT+TGG - chr2_4:55982862-55982881 Msa0336550:five_prime_UTR 45.0%
AGAAGGACTAAACAGGCCAA+GGG + chr2_4:55982881-55982900 None:intergenic 45.0%
TTGGCAACAGCAACTTGGCT+TGG + chr2_4:55981443-55981462 None:intergenic 50.0%
ATCTGCAAGTTCAACTCCCC+AGG - chr2_4:55981655-55981674 Msa0336550:CDS 50.0%
TCTGCAAGTTCAACTCCCCA+GGG - chr2_4:55981656-55981675 Msa0336550:CDS 50.0%
GTGGTTTCAGTTTCACCCTG+GGG + chr2_4:55981674-55981693 None:intergenic 50.0%
GGTGGTTTCAGTTTCACCCT+GGG + chr2_4:55981675-55981694 None:intergenic 50.0%
TGGTGGTTTCAGTTTCACCC+TGG + chr2_4:55981676-55981695 None:intergenic 50.0%
GTGAGTACAGCAACCATAGC+CGG - chr2_4:55981720-55981739 Msa0336550:CDS 50.0%
!! GCTTCTCTAAGGTGGAAGAC+AGG + chr2_4:55981802-55981821 None:intergenic 50.0%
GTCTTCCACCTTAGAGAAGC+TGG - chr2_4:55981802-55981821 Msa0336550:CDS 50.0%
TTCCACCTTAGAGAAGCTGG+TGG - chr2_4:55981805-55981824 Msa0336550:CDS 50.0%
AGATGAGCTGAACCAGGAAC+TGG - chr2_4:55981847-55981866 Msa0336550:CDS 50.0%
CTTGGAAGCAACCATGACAC+TGG + chr2_4:55982095-55982114 None:intergenic 50.0%
AACGCGGTATATGCTCGAGT+AGG - chr2_4:55982573-55982592 Msa0336550:CDS 50.0%
CGGTATATGCTCGAGTAGGA+GGG - chr2_4:55982577-55982596 Msa0336550:CDS 50.0%
GGTATATGCTCGAGTAGGAG+GGG - chr2_4:55982578-55982597 Msa0336550:CDS 50.0%
GAGAAGGACTAAACAGGCCA+AGG + chr2_4:55982882-55982901 None:intergenic 50.0%
TTGGCAACAGCAACTTGGCT+TGG + chr2_4:55981443-55981462 None:intergenic 50.0%
ATCTGCAAGTTCAACTCCCC+AGG - chr2_4:55981655-55981674 Msa0336550:CDS 50.0%
TCTGCAAGTTCAACTCCCCA+GGG - chr2_4:55981656-55981675 Msa0336550:CDS 50.0%
GTGGTTTCAGTTTCACCCTG+GGG + chr2_4:55981674-55981693 None:intergenic 50.0%
GGTGGTTTCAGTTTCACCCT+GGG + chr2_4:55981675-55981694 None:intergenic 50.0%
TGGTGGTTTCAGTTTCACCC+TGG + chr2_4:55981676-55981695 None:intergenic 50.0%
GTGAGTACAGCAACCATAGC+CGG - chr2_4:55981720-55981739 Msa0336550:CDS 50.0%
!! GCTTCTCTAAGGTGGAAGAC+AGG + chr2_4:55981802-55981821 None:intergenic 50.0%
GTCTTCCACCTTAGAGAAGC+TGG - chr2_4:55981802-55981821 Msa0336550:CDS 50.0%
TTCCACCTTAGAGAAGCTGG+TGG - chr2_4:55981805-55981824 Msa0336550:CDS 50.0%
AGATGAGCTGAACCAGGAAC+TGG - chr2_4:55981847-55981866 Msa0336550:CDS 50.0%
CTTGGAAGCAACCATGACAC+TGG + chr2_4:55982095-55982114 None:intergenic 50.0%
AACGCGGTATATGCTCGAGT+AGG - chr2_4:55982573-55982592 Msa0336550:CDS 50.0%
CGGTATATGCTCGAGTAGGA+GGG - chr2_4:55982577-55982596 Msa0336550:CDS 50.0%
GGTATATGCTCGAGTAGGAG+GGG - chr2_4:55982578-55982597 Msa0336550:CDS 50.0%
GAGAAGGACTAAACAGGCCA+AGG + chr2_4:55982882-55982901 None:intergenic 50.0%
! CTGTTACCGGCTGATTCTGC+CGG + chr2_4:55981742-55981761 None:intergenic 55.0%
GGCAGAATCAGCCGGTAACA+GGG - chr2_4:55981741-55981760 Msa0336550:CDS 55.0%
! CTTGGCAAGTTTAGCTCGGC+AGG + chr2_4:55981767-55981786 None:intergenic 55.0%
GACAGGATCCACAGCACTCT+TGG + chr2_4:55981785-55981804 None:intergenic 55.0%
! AGCCACCAGCTTCTCTAAGG+TGG + chr2_4:55981810-55981829 None:intergenic 55.0%
!! TTTCACGGCGTAAGAGCACC+AGG - chr2_4:55981917-55981936 Msa0336550:intron 55.0%
GCGGTATATGCTCGAGTAGG+AGG - chr2_4:55982576-55982595 Msa0336550:CDS 55.0%
CTCTTCCCCACCTCCAATTG+TGG - chr2_4:55982803-55982822 Msa0336550:five_prime_UTR 55.0%
! CTGTTACCGGCTGATTCTGC+CGG + chr2_4:55981742-55981761 None:intergenic 55.0%
GGCAGAATCAGCCGGTAACA+GGG - chr2_4:55981741-55981760 Msa0336550:CDS 55.0%
! CTTGGCAAGTTTAGCTCGGC+AGG + chr2_4:55981767-55981786 None:intergenic 55.0%
GACAGGATCCACAGCACTCT+TGG + chr2_4:55981785-55981804 None:intergenic 55.0%
! AGCCACCAGCTTCTCTAAGG+TGG + chr2_4:55981810-55981829 None:intergenic 55.0%
!! TTTCACGGCGTAAGAGCACC+AGG - chr2_4:55981917-55981936 Msa0336550:intron 55.0%
GCGGTATATGCTCGAGTAGG+AGG - chr2_4:55982576-55982595 Msa0336550:CDS 55.0%
CTCTTCCCCACCTCCAATTG+TGG - chr2_4:55982803-55982822 Msa0336550:five_prime_UTR 55.0%
CCATAGCCGGCAGAATCAGC+CGG - chr2_4:55981733-55981752 Msa0336550:CDS 60.0%
CGGCAGAATCAGCCGGTAAC+AGG - chr2_4:55981740-55981759 Msa0336550:CDS 60.0%
GCGAGCCACCAGCTTCTCTA+AGG + chr2_4:55981813-55981832 None:intergenic 60.0%
CCATAGCCGGCAGAATCAGC+CGG - chr2_4:55981733-55981752 Msa0336550:CDS 60.0%
CGGCAGAATCAGCCGGTAAC+AGG - chr2_4:55981740-55981759 Msa0336550:CDS 60.0%
GCGAGCCACCAGCTTCTCTA+AGG + chr2_4:55981813-55981832 None:intergenic 60.0%
! CCGGCTGATTCTGCCGGCTA+TGG + chr2_4:55981736-55981755 None:intergenic 65.0%
AGCTCGGCAGGCCCTGTTAC+CGG + chr2_4:55981755-55981774 None:intergenic 65.0%
! CCGGCTGATTCTGCCGGCTA+TGG + chr2_4:55981736-55981755 None:intergenic 65.0%
AGCTCGGCAGGCCCTGTTAC+CGG + chr2_4:55981755-55981774 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr2_4 gene 55981403 55983062 55981403 ID=Msa0336550;Name=Msa0336550
chr2_4 mRNA 55981403 55983062 55981403 ID=Msa0336550-mRNA-1;Parent=Msa0336550;Name=Msa0336550-mRNA-1;_AED=0.37;_eAED=0.37;_QI=304|1|1|1|1|1|2|220|233
chr2_4 exon 55981403 55981902 55981403 ID=Msa0336550-mRNA-1:exon:17105;Parent=Msa0336550-mRNA-1
chr2_4 exon 55982337 55983062 55982337 ID=Msa0336550-mRNA-1:exon:17104;Parent=Msa0336550-mRNA-1
chr2_4 five_prime_UTR 55982759 55983062 55982759 ID=Msa0336550-mRNA-1:five_prime_utr;Parent=Msa0336550-mRNA-1
chr2_4 CDS 55982337 55982758 55982337 ID=Msa0336550-mRNA-1:cds;Parent=Msa0336550-mRNA-1
chr2_4 CDS 55981623 55981902 55981623 ID=Msa0336550-mRNA-1:cds;Parent=Msa0336550-mRNA-1
chr2_4 three_prime_UTR 55981403 55981622 55981403 ID=Msa0336550-mRNA-1:three_prime_utr;Parent=Msa0336550-mRNA-1
Gene Sequence

>Msa0336550

ATGTTAACAGCAAGTGAGTACAGCAACCATAGCCGGCAGAATCAGCCGGTAACAGGGCCTGCCGAGCTAAACTTGCCAAGAGTGCTGTGGATCCTGTCTTCCACCTTAGAGAAGCTGGTGGCTCGCAATGAAAAACTAGTAGATGAGCTGAACCAGGAACTGGATAAGCTGAATAATGGCACAGTAAGATTAGGGAAGAGCTTGAATTTGTTTCACGGCGTAAGAGCACCAGGAATAAGCATACCTAAGTACTTGGAGAGGATATACAAGTACACTAATTGTAGCCCATCATGTTTTGTGGTTGGCTATGTGTATATAGACATGCTGACTCACAAGCACCCTGATTCTCTAGTCTTGTCCTTGAATGTGCACAGGTTGCTAGTTACCAGTGTCATGGTTGCTTCCAAGATGCTAGATGATGAACATTATAACAACGCGGTATATGCTCGAGTAGGAGGGGTTAGCAATGCTGAATTGAACAAGCTGGAATTAGAGTTGCTCTTTCTGTTAGATTTTAAAGTTATGGTAAGCCCTCGAGTTTTTGAGAGTTACTGTTTGCACTTAGAAAAGGTGATGCTTGTAAATGGAACTGGCTTGAAGATTGAAAGGACATTGTCACCAAAATCTTTTGAGACTGAAATATCAGTTGAAGATCAGCAAAGCTCTTCCCCACCTCCAATTGTGGATTATGGACTGACATAA

Protein sequence

>Msa0336550

MLTASEYSNHSRQNQPVTGPAELNLPRVLWILSSTLEKLVARNEKLVDELNQELDKLNNGTVRLGKSLNLFHGVRAPGISIPKYLERIYKYTNCSPSCFVVGYVYIDMLTHKHPDSLVLSLNVHRLLVTSVMVASKMLDDEHYNNAVYARVGGVSNAELNKLELELLFLLDFKVMVSPRVFESYCLHLEKVMLVNGTGLKIERTLSPKSFETEISVEDQQSSSPPPIVDYGLT*