AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0622800


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0622800 MtrunA17_Chr2g0322921 97.854 233 5 0 1 233 1 233 1.93e-169 466
Msa0622800 MtrunA17_Chr7g0250121 42.211 199 100 3 25 222 10 194 2.07e-53 171
Msa0622800 MtrunA17_Chr8g0335971 42.211 199 98 2 25 222 9 191 4.79e-51 164
Msa0622800 MtrunA17_Chr7g0259831 43.781 201 97 3 23 223 28 212 5.80e-47 154
Msa0622800 MtrunA17_Chr7g0231431 43.333 180 93 2 26 205 29 199 1.11e-46 154
Msa0622800 MtrunA17_Chr4g0012811 42.623 183 94 3 24 205 27 199 9.35e-36 126
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0622800 AT3G21870.1 65.025 203 51 4 16 209 12 203 5.53e-75 226
Msa0622800 AT2G44740.1 49.686 159 79 1 34 192 8 165 2.58e-50 163
Msa0622800 AT3G63120.2 53.676 136 59 2 67 202 61 192 3.88e-47 155
Msa0622800 AT3G63120.1 53.676 136 59 2 67 202 61 192 3.88e-47 155
Msa0622800 AT3G05327.1 40.341 176 88 3 20 190 25 188 6.08e-43 144
Msa0622800 AT2G45080.1 41.436 181 93 3 25 205 27 194 2.53e-42 143
Msa0622800 AT3G60550.1 40.299 201 104 5 5 205 16 200 5.89e-42 142
Msa0622800 AT5G61650.1 39.109 202 101 4 12 211 9 190 3.12e-41 140
Msa0622800 AT5G07450.1 40.000 170 90 2 25 194 20 177 6.66e-40 137

Find 90 sgRNAs with CRISPR-Local

Find 243 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTCTTTCTGTTGTCAATTT+TGG 0.004375 4_2:-75542901 Msa0622800:three_prime_UTR
GATACGAACTTTGTCAAATT+TGG 0.168594 4_2:-75542783 Msa0622800:three_prime_UTR
CTTCATGGCTAAGCAATTAT+TGG 0.188133 4_2:-75542846 Msa0622800:three_prime_UTR
ATTTCAGTCTCAAAAGATTT+TGG 0.218198 4_2:+75542994 None:intergenic
CCACCTCCAATTGTGGATTA+TGG 0.232331 4_2:-75542943 Msa0622800:CDS
CGGCAGAATCAGCCGGTAAC+AGG 0.242921 4_2:-75544013 Msa0622800:CDS
AAGCCACTAATATTATTTAA+AGG 0.245893 4_2:+75544231 None:intergenic
CTCACTTGCTGTTAACATTT+AGG 0.270807 4_2:+75544051 None:intergenic
TTCCATCTCTGCATGTTATC+TGG 0.284086 4_2:+75544156 None:intergenic
GAAAAGGTGATGCTTGTAAA+TGG 0.293233 4_2:-75543048 Msa0622800:CDS
TATTCATATAAATAAGAAAA+TGG 0.307247 4_2:+75542811 None:intergenic
AGCTCGGCAGGCCCTGTTAC+CGG 0.321332 4_2:+75544001 None:intergenic
TATTCAGCTTATCCAGTTCC+TGG 0.321877 4_2:+75543894 None:intergenic
AGCCACTAATATTATTTAAA+GGG 0.325528 4_2:+75544232 None:intergenic
TACTTAGGTATGCTTATTCC+TGG 0.349163 4_2:+75543818 None:intergenic
ATTTGCTATTTGAATGGTTA+AGG 0.353311 4_2:+75544127 None:intergenic
CTCTGCATGTTATCTGGTTT+AGG 0.359379 4_2:+75544162 None:intergenic
AATAATGGCACAGTAAGATT+AGG 0.366725 4_2:-75543875 Msa0622800:CDS
GCAATTATTGGATTGTTCAT+TGG 0.367010 4_2:-75542834 Msa0622800:three_prime_UTR
AAGGACAAGACTAGAGAATC+AGG 0.374269 4_2:+75543707 None:intergenic
CTCCAAGAATAACAAGCTTT+AGG 0.381462 4_2:+75542705 None:intergenic
GCGAGCCACCAGCTTCTCTA+AGG 0.404470 4_2:+75543943 None:intergenic
GGTGGTTTCAGTTTCACCCT+GGG 0.410600 4_2:+75544081 None:intergenic
TGTTAACATTTAGGCCATCT+TGG 0.425164 4_2:+75544060 None:intergenic
GCTCATATTTGCTATTTGAA+TGG 0.426866 4_2:+75544121 None:intergenic
GAACTGGATAAGCTGAATAA+TGG 0.429459 4_2:-75543890 Msa0622800:CDS
GTCTTCCACCTTAGAGAAGC+TGG 0.436418 4_2:-75543951 Msa0622800:CDS
GACAGGATCCACAGCACTCT+TGG 0.440490 4_2:+75543971 None:intergenic
CCGGCTGATTCTGCCGGCTA+TGG 0.443270 4_2:+75544020 None:intergenic
GTCAGTCCATAATCCACAAT+TGG 0.446292 4_2:+75542937 None:intergenic
TAGCAACCTGTGCACATTCA+AGG 0.446626 4_2:+75543688 None:intergenic
ATAATGGCACAGTAAGATTA+GGG 0.454796 4_2:-75543874 Msa0622800:CDS
ATCTGCAAGTTCAACTCCCC+AGG 0.462607 4_2:-75544098 Msa0622800:five_prime_UTR
TTACTGTTTGCACTTAGAAA+AGG 0.462960 4_2:-75543064 Msa0622800:CDS
CGTGCGCAAAACAAAATAAG+AGG 0.465273 4_2:+75544342 None:intergenic
TGGTGGTTTCAGTTTCACCC+TGG 0.468050 4_2:+75544080 None:intergenic
CTTGGCAAGTTTAGCTCGGC+AGG 0.469634 4_2:+75543989 None:intergenic
CTCTTCCCCACCTCCAATTG+TGG 0.470595 4_2:-75542950 Msa0622800:CDS
AGATGAGCTGAACCAGGAAC+TGG 0.473686 4_2:-75543906 Msa0622800:CDS
TCACTCATCATCTAGCATCT+TGG 0.474488 4_2:+75543643 None:intergenic
GTATATTCTCAGTAATGGCT+TGG 0.475056 4_2:-75544288 Msa0622800:five_prime_UTR
GTGATGCTTGTAAATGGAAC+TGG 0.476530 4_2:-75543042 Msa0622800:CDS
CAACTGTATATTCTCAGTAA+TGG 0.483096 4_2:-75544293 Msa0622800:five_prime_UTR
CTGTTACCGGCTGATTCTGC+CGG 0.485975 4_2:+75544014 None:intergenic
TTGGCAACAGCAACTTGGCT+TGG 0.497654 4_2:+75544313 None:intergenic
AATAAGCATACCTAAGTACT+TGG 0.500784 4_2:-75543813 Msa0622800:CDS
CAATGCTGAATTGAACAAGC+TGG 0.503751 4_2:-75543148 Msa0622800:CDS
GTGAGTACAGCAACCATAGC+CGG 0.507563 4_2:-75544033 Msa0622800:CDS
TTTCACGGCGTAAGAGCACC+AGG 0.511343 4_2:-75543836 Msa0622800:CDS
TATATCCTCTCCAAGTACTT+AGG 0.518675 4_2:+75543803 None:intergenic
GCTTCTCTAAGGTGGAAGAC+AGG 0.527781 4_2:+75543954 None:intergenic
TACAGTTGGCAACAGCAACT+TGG 0.532604 4_2:+75544308 None:intergenic
AAGAGCTTGAATTTGTTTCA+CGG 0.533289 4_2:-75543851 Msa0622800:CDS
CCATAATCCACAATTGGAGG+TGG 0.534813 4_2:+75542943 None:intergenic
GCCACTAATATTATTTAAAG+GGG 0.538210 4_2:+75544233 None:intergenic
TAACATTTAGGCCATCTTGG+TGG 0.539033 4_2:+75544063 None:intergenic
GAGAAGGACTAAACAGGCCA+AGG 0.541366 4_2:+75542874 None:intergenic
GCGGTATATGCTCGAGTAGG+AGG 0.541871 4_2:-75543177 Msa0622800:CDS
TCTTGTCCTTGAATGTGCAC+AGG 0.542755 4_2:-75543694 Msa0622800:CDS
CACTCTTGGCAAGTTTAGCT+CGG 0.548577 4_2:+75543985 None:intergenic
CCATAGCCGGCAGAATCAGC+CGG 0.548917 4_2:-75544020 Msa0622800:CDS
CGGTATATGCTCGAGTAGGA+GGG 0.551367 4_2:-75543176 Msa0622800:CDS
TAGCCAACCACAAAACATGA+TGG 0.554883 4_2:+75543761 None:intergenic
AACCAGATAACATGCAGAGA+TGG 0.558467 4_2:-75544158 Msa0622800:five_prime_UTR
AGCCACCAGCTTCTCTAAGG+TGG 0.562842 4_2:+75543946 None:intergenic
TGTTATCTGGTTTAGGTGTG+TGG 0.564260 4_2:+75544169 None:intergenic
GGCAGAATCAGCCGGTAACA+GGG 0.571866 4_2:-75544012 Msa0622800:CDS
TAAGACAAATCACAAAGATG+TGG 0.575327 4_2:-75544259 Msa0622800:five_prime_UTR
GAACTGGCTTGAAGATTGAA+AGG 0.577156 4_2:-75543026 Msa0622800:CDS
CATAATCCACAATTGGAGGT+GGG 0.587923 4_2:+75542944 None:intergenic
ATAATCCACAATTGGAGGTG+GGG 0.591202 4_2:+75542945 None:intergenic
ACTAGTAGATGAGCTGAACC+AGG 0.595950 4_2:-75543912 Msa0622800:CDS
GTTGCTAGTTACCAGTGTCA+TGG 0.598576 4_2:-75543672 Msa0622800:CDS
AGCCAACCACAAAACATGAT+GGG 0.609259 4_2:+75543762 None:intergenic
TGAAACTGAAACCACCAAGA+TGG 0.611290 4_2:-75544074 Msa0622800:five_prime_UTR
CATTACTGAGAATATACAGT+TGG 0.613107 4_2:+75544294 None:intergenic
GTGGTTTCAGTTTCACCCTG+GGG 0.613967 4_2:+75544082 None:intergenic
CTTGGAAGCAACCATGACAC+TGG 0.617633 4_2:+75543661 None:intergenic
AGTCCATAATCCACAATTGG+AGG 0.620702 4_2:+75542940 None:intergenic
AAGACAAATCACAAAGATGT+GGG 0.622862 4_2:-75544258 Msa0622800:five_prime_UTR
AGAAGGACTAAACAGGCCAA+GGG 0.627699 4_2:+75542875 None:intergenic
CCACTAATATTATTTAAAGG+GGG 0.648222 4_2:+75544234 None:intergenic
GCATACCTAAGTACTTGGAG+AGG 0.659601 4_2:-75543808 Msa0622800:CDS
AGGACAAGACTAGAGAATCA+GGG 0.662861 4_2:+75543708 None:intergenic
TCTGCAAGTTCAACTCCCCA+GGG 0.663591 4_2:-75544097 Msa0622800:five_prime_UTR
GGTATATGCTCGAGTAGGAG+GGG 0.673849 4_2:-75543175 Msa0622800:CDS
TTCCACCTTAGAGAAGCTGG+TGG 0.676985 4_2:-75543948 Msa0622800:CDS
TAAACTTGCCAAGAGTGCTG+TGG 0.680744 4_2:-75543979 Msa0622800:CDS
AACGCGGTATATGCTCGAGT+AGG 0.690253 4_2:-75543180 Msa0622800:CDS
CTGTAGACATTATAACAACG+CGG 0.751948 4_2:-75543196 Msa0622800:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATTCATATAAATAAGAAAA+TGG + chr4_2:75544255-75544274 None:intergenic 10.0%
!! TATTCATATAAATAAGAAAA+TGG + chr4_2:75544255-75544274 None:intergenic 10.0%
!! ATAGTTTATACATAAAAACT+TGG - chr4_2:75543719-75543738 Msa0622800:CDS 15.0%
!! ATAGTTTATACATAAAAACT+TGG - chr4_2:75543719-75543738 Msa0622800:CDS 15.0%
!! AGCCACTAATATTATTTAAA+GGG + chr4_2:75542834-75542853 None:intergenic 20.0%
!! AAGCCACTAATATTATTTAA+AGG + chr4_2:75542835-75542854 None:intergenic 20.0%
!!! ATGTTTTATTGCACTATTAA+AGG - chr4_2:75543477-75543496 Msa0622800:intron 20.0%
!!! AATTGTTTTTTAAGCTATCA+TGG + chr4_2:75543649-75543668 None:intergenic 20.0%
!! CTTAATTAAGCTATTTATCA+AGG - chr4_2:75543751-75543770 Msa0622800:CDS 20.0%
!! TAAAACTAACCATACTTAAA+AGG + chr4_2:75543777-75543796 None:intergenic 20.0%
!!! TCTGTTAGATTTTAAAGTTA+TGG - chr4_2:75543954-75543973 Msa0622800:CDS 20.0%
!! AGCCACTAATATTATTTAAA+GGG + chr4_2:75542834-75542853 None:intergenic 20.0%
!! AAGCCACTAATATTATTTAA+AGG + chr4_2:75542835-75542854 None:intergenic 20.0%
!!! ATGTTTTATTGCACTATTAA+AGG - chr4_2:75543477-75543496 Msa0622800:intron 20.0%
!!! AATTGTTTTTTAAGCTATCA+TGG + chr4_2:75543649-75543668 None:intergenic 20.0%
!! CTTAATTAAGCTATTTATCA+AGG - chr4_2:75543751-75543770 Msa0622800:CDS 20.0%
!! TAAAACTAACCATACTTAAA+AGG + chr4_2:75543777-75543796 None:intergenic 20.0%
!!! TCTGTTAGATTTTAAAGTTA+TGG - chr4_2:75543954-75543973 Msa0622800:CDS 20.0%
! CCACTAATATTATTTAAAGG+GGG + chr4_2:75542832-75542851 None:intergenic 25.0%
! GCCACTAATATTATTTAAAG+GGG + chr4_2:75542833-75542852 None:intergenic 25.0%
!!! ATTTGCTATTTGAATGGTTA+AGG + chr4_2:75542939-75542958 None:intergenic 25.0%
! GCAATAAAACATTAAGCTTT+AGG + chr4_2:75543469-75543488 None:intergenic 25.0%
! AATAAGCACAAAACAACTTA+TGG + chr4_2:75543614-75543633 None:intergenic 25.0%
!! ATTTCAGTCTCAAAAGATTT+TGG + chr4_2:75544072-75544091 None:intergenic 25.0%
!! TTTCTTTCTGTTGTCAATTT+TGG - chr4_2:75544162-75544181 Msa0622800:five_prime_UTR 25.0%
!! TTCTTTCTGTTGTCAATTTT+GGG - chr4_2:75544163-75544182 Msa0622800:five_prime_UTR 25.0%
!!! ATTTTTCCTAAAGCTTGTTA+TGG - chr4_2:75544352-75544371 Msa0622800:five_prime_UTR 25.0%
! CCACTAATATTATTTAAAGG+GGG + chr4_2:75542832-75542851 None:intergenic 25.0%
! GCCACTAATATTATTTAAAG+GGG + chr4_2:75542833-75542852 None:intergenic 25.0%
!!! ATTTGCTATTTGAATGGTTA+AGG + chr4_2:75542939-75542958 None:intergenic 25.0%
! GCAATAAAACATTAAGCTTT+AGG + chr4_2:75543469-75543488 None:intergenic 25.0%
! AATAAGCACAAAACAACTTA+TGG + chr4_2:75543614-75543633 None:intergenic 25.0%
!! ATTTCAGTCTCAAAAGATTT+TGG + chr4_2:75544072-75544091 None:intergenic 25.0%
!! TTTCTTTCTGTTGTCAATTT+TGG - chr4_2:75544162-75544181 Msa0622800:five_prime_UTR 25.0%
!! TTCTTTCTGTTGTCAATTTT+GGG - chr4_2:75544163-75544182 Msa0622800:five_prime_UTR 25.0%
CATTACTGAGAATATACAGT+TGG + chr4_2:75542772-75542791 None:intergenic 30.0%
CAACTGTATATTCTCAGTAA+TGG - chr4_2:75542770-75542789 Msa0622800:three_prime_UTR 30.0%
TAAGACAAATCACAAAGATG+TGG - chr4_2:75542804-75542823 Msa0622800:three_prime_UTR 30.0%
AAGACAAATCACAAAGATGT+GGG - chr4_2:75542805-75542824 Msa0622800:three_prime_UTR 30.0%
CCCCCTTTAAATAATATTAG+TGG - chr4_2:75542829-75542848 Msa0622800:three_prime_UTR 30.0%
!! GCTCATATTTGCTATTTGAA+TGG + chr4_2:75542945-75542964 None:intergenic 30.0%
AATAATGGCACAGTAAGATT+AGG - chr4_2:75543188-75543207 Msa0622800:CDS 30.0%
ATAATGGCACAGTAAGATTA+GGG - chr4_2:75543189-75543208 Msa0622800:CDS 30.0%
! AAGAGCTTGAATTTGTTTCA+CGG - chr4_2:75543212-75543231 Msa0622800:intron 30.0%
AATAAGCATACCTAAGTACT+TGG - chr4_2:75543250-75543269 Msa0622800:intron 30.0%
!! AGCTTTAGGAGAAGTAAAAT+GGG + chr4_2:75543455-75543474 None:intergenic 30.0%
!! AAGCTTTAGGAGAAGTAAAA+TGG + chr4_2:75543456-75543475 None:intergenic 30.0%
! AGGAACTGAAGTTGATTTAA+AGG - chr4_2:75543497-75543516 Msa0622800:intron 30.0%
! AGTTGATTTAAAGGCCTATT+TGG - chr4_2:75543506-75543525 Msa0622800:intron 30.0%
TTTATGCTAATAGACAAACC+CGG + chr4_2:75543542-75543561 None:intergenic 30.0%
!! TTATCAAGGCCTTTTAAGTA+TGG - chr4_2:75543765-75543784 Msa0622800:CDS 30.0%
ATTATGTGCATCATGTTCTT+TGG - chr4_2:75543835-75543854 Msa0622800:CDS 30.0%
TTACTGTTTGCACTTAGAAA+AGG - chr4_2:75543999-75544018 Msa0622800:CDS 30.0%
! TCTTTCTGTTGTCAATTTTG+GGG - chr4_2:75544164-75544183 Msa0622800:five_prime_UTR 30.0%
GCAATTATTGGATTGTTCAT+TGG - chr4_2:75544229-75544248 Msa0622800:five_prime_UTR 30.0%
GATACGAACTTTGTCAAATT+TGG - chr4_2:75544280-75544299 Msa0622800:five_prime_UTR 30.0%
CATTACTGAGAATATACAGT+TGG + chr4_2:75542772-75542791 None:intergenic 30.0%
CAACTGTATATTCTCAGTAA+TGG - chr4_2:75542770-75542789 Msa0622800:three_prime_UTR 30.0%
TAAGACAAATCACAAAGATG+TGG - chr4_2:75542804-75542823 Msa0622800:three_prime_UTR 30.0%
AAGACAAATCACAAAGATGT+GGG - chr4_2:75542805-75542824 Msa0622800:three_prime_UTR 30.0%
CCCCCTTTAAATAATATTAG+TGG - chr4_2:75542829-75542848 Msa0622800:three_prime_UTR 30.0%
!! GCTCATATTTGCTATTTGAA+TGG + chr4_2:75542945-75542964 None:intergenic 30.0%
AATAATGGCACAGTAAGATT+AGG - chr4_2:75543188-75543207 Msa0622800:CDS 30.0%
ATAATGGCACAGTAAGATTA+GGG - chr4_2:75543189-75543208 Msa0622800:CDS 30.0%
! AAGAGCTTGAATTTGTTTCA+CGG - chr4_2:75543212-75543231 Msa0622800:intron 30.0%
AATAAGCATACCTAAGTACT+TGG - chr4_2:75543250-75543269 Msa0622800:intron 30.0%
!! AGCTTTAGGAGAAGTAAAAT+GGG + chr4_2:75543455-75543474 None:intergenic 30.0%
!! AAGCTTTAGGAGAAGTAAAA+TGG + chr4_2:75543456-75543475 None:intergenic 30.0%
! AGGAACTGAAGTTGATTTAA+AGG - chr4_2:75543497-75543516 Msa0622800:intron 30.0%
! AGTTGATTTAAAGGCCTATT+TGG - chr4_2:75543506-75543525 Msa0622800:intron 30.0%
TTTATGCTAATAGACAAACC+CGG + chr4_2:75543542-75543561 None:intergenic 30.0%
!! TTATCAAGGCCTTTTAAGTA+TGG - chr4_2:75543765-75543784 Msa0622800:CDS 30.0%
ATTATGTGCATCATGTTCTT+TGG - chr4_2:75543835-75543854 Msa0622800:CDS 30.0%
TTACTGTTTGCACTTAGAAA+AGG - chr4_2:75543999-75544018 Msa0622800:CDS 30.0%
! TCTTTCTGTTGTCAATTTTG+GGG - chr4_2:75544164-75544183 Msa0622800:five_prime_UTR 30.0%
GCAATTATTGGATTGTTCAT+TGG - chr4_2:75544229-75544248 Msa0622800:five_prime_UTR 30.0%
GATACGAACTTTGTCAAATT+TGG - chr4_2:75544280-75544299 Msa0622800:five_prime_UTR 30.0%
GTATATTCTCAGTAATGGCT+TGG - chr4_2:75542775-75542794 Msa0622800:three_prime_UTR 35.0%
TGTTAACATTTAGGCCATCT+TGG + chr4_2:75543006-75543025 None:intergenic 35.0%
!! CTCACTTGCTGTTAACATTT+AGG + chr4_2:75543015-75543034 None:intergenic 35.0%
GAACTGGATAAGCTGAATAA+TGG - chr4_2:75543173-75543192 Msa0622800:CDS 35.0%
TACTTAGGTATGCTTATTCC+TGG + chr4_2:75543248-75543267 None:intergenic 35.0%
TATATCCTCTCCAAGTACTT+AGG + chr4_2:75543263-75543282 None:intergenic 35.0%
!! GCTTTAGGAGAAGTAAAATG+GGG + chr4_2:75543454-75543473 None:intergenic 35.0%
!! CCTATTTGGATTAGCTTATC+CGG - chr4_2:75543520-75543539 Msa0622800:intron 35.0%
!! CTATTTGGATTAGCTTATCC+GGG - chr4_2:75543521-75543540 Msa0622800:intron 35.0%
CTGTAGACATTATAACAACG+CGG - chr4_2:75543867-75543886 Msa0622800:CDS 35.0%
AGTAACTCTCAAAAACTCGA+GGG + chr4_2:75543984-75544003 None:intergenic 35.0%
GAAAAGGTGATGCTTGTAAA+TGG - chr4_2:75544015-75544034 Msa0622800:CDS 35.0%
GAAAAAGAGAAGGACTAAAC+AGG + chr4_2:75544198-75544217 None:intergenic 35.0%
! AGTCCTTCTCTTTTTCTTCA+TGG - chr4_2:75544202-75544221 Msa0622800:five_prime_UTR 35.0%
TAGCCATGAAGAAAAAGAGA+AGG + chr4_2:75544208-75544227 None:intergenic 35.0%
CTTCATGGCTAAGCAATTAT+TGG - chr4_2:75544217-75544236 Msa0622800:five_prime_UTR 35.0%
GTATATTCTCAGTAATGGCT+TGG - chr4_2:75542775-75542794 Msa0622800:three_prime_UTR 35.0%
TGTTAACATTTAGGCCATCT+TGG + chr4_2:75543006-75543025 None:intergenic 35.0%
!! CTCACTTGCTGTTAACATTT+AGG + chr4_2:75543015-75543034 None:intergenic 35.0%
GAACTGGATAAGCTGAATAA+TGG - chr4_2:75543173-75543192 Msa0622800:CDS 35.0%
TACTTAGGTATGCTTATTCC+TGG + chr4_2:75543248-75543267 None:intergenic 35.0%
TATATCCTCTCCAAGTACTT+AGG + chr4_2:75543263-75543282 None:intergenic 35.0%
!! GCTTTAGGAGAAGTAAAATG+GGG + chr4_2:75543454-75543473 None:intergenic 35.0%
!! CCTATTTGGATTAGCTTATC+CGG - chr4_2:75543520-75543539 Msa0622800:intron 35.0%
!! CTATTTGGATTAGCTTATCC+GGG - chr4_2:75543521-75543540 Msa0622800:intron 35.0%
CTGTAGACATTATAACAACG+CGG - chr4_2:75543867-75543886 Msa0622800:CDS 35.0%
AGTAACTCTCAAAAACTCGA+GGG + chr4_2:75543984-75544003 None:intergenic 35.0%
GAAAAGGTGATGCTTGTAAA+TGG - chr4_2:75544015-75544034 Msa0622800:CDS 35.0%
GAAAAAGAGAAGGACTAAAC+AGG + chr4_2:75544198-75544217 None:intergenic 35.0%
! AGTCCTTCTCTTTTTCTTCA+TGG - chr4_2:75544202-75544221 Msa0622800:five_prime_UTR 35.0%
TAGCCATGAAGAAAAAGAGA+AGG + chr4_2:75544208-75544227 None:intergenic 35.0%
CTTCATGGCTAAGCAATTAT+TGG - chr4_2:75544217-75544236 Msa0622800:five_prime_UTR 35.0%
CGTGCGCAAAACAAAATAAG+AGG + chr4_2:75542724-75542743 None:intergenic 40.0%
! TGTTATCTGGTTTAGGTGTG+TGG + chr4_2:75542897-75542916 None:intergenic 40.0%
! CTCTGCATGTTATCTGGTTT+AGG + chr4_2:75542904-75542923 None:intergenic 40.0%
AACCAGATAACATGCAGAGA+TGG - chr4_2:75542905-75542924 Msa0622800:three_prime_UTR 40.0%
TTCCATCTCTGCATGTTATC+TGG + chr4_2:75542910-75542929 None:intergenic 40.0%
TGAAACTGAAACCACCAAGA+TGG - chr4_2:75542989-75543008 Msa0622800:CDS 40.0%
TAACATTTAGGCCATCTTGG+TGG + chr4_2:75543003-75543022 None:intergenic 40.0%
TATTCAGCTTATCCAGTTCC+TGG + chr4_2:75543172-75543191 None:intergenic 40.0%
! TTGTAGCCCATCATGTTTTG+TGG - chr4_2:75543295-75543314 Msa0622800:intron 40.0%
AGCCAACCACAAAACATGAT+GGG + chr4_2:75543304-75543323 None:intergenic 40.0%
TAGCCAACCACAAAACATGA+TGG + chr4_2:75543305-75543324 None:intergenic 40.0%
AGGACAAGACTAGAGAATCA+GGG + chr4_2:75543358-75543377 None:intergenic 40.0%
AAGGACAAGACTAGAGAATC+AGG + chr4_2:75543359-75543378 None:intergenic 40.0%
TCACTCATCATCTAGCATCT+TGG + chr4_2:75543423-75543442 None:intergenic 40.0%
GGAGAAGTAAAATGGGGTTA+GGG + chr4_2:75543448-75543467 None:intergenic 40.0%
AGGAGAAGTAAAATGGGGTT+AGG + chr4_2:75543449-75543468 None:intergenic 40.0%
CCGGATAAGCTAATCCAAAT+AGG + chr4_2:75543523-75543542 None:intergenic 40.0%
CAATGCTGAATTGAACAAGC+TGG - chr4_2:75543915-75543934 Msa0622800:CDS 40.0%
CAGTAACTCTCAAAAACTCG+AGG + chr4_2:75543985-75544004 None:intergenic 40.0%
GTGATGCTTGTAAATGGAAC+TGG - chr4_2:75544021-75544040 Msa0622800:CDS 40.0%
!! GAACTGGCTTGAAGATTGAA+AGG - chr4_2:75544037-75544056 Msa0622800:CDS 40.0%
ATAATCCACAATTGGAGGTG+GGG + chr4_2:75544121-75544140 None:intergenic 40.0%
CATAATCCACAATTGGAGGT+GGG + chr4_2:75544122-75544141 None:intergenic 40.0%
AGTCCATAATCCACAATTGG+AGG + chr4_2:75544126-75544145 None:intergenic 40.0%
GTCAGTCCATAATCCACAAT+TGG + chr4_2:75544129-75544148 None:intergenic 40.0%
CGTGCGCAAAACAAAATAAG+AGG + chr4_2:75542724-75542743 None:intergenic 40.0%
! TGTTATCTGGTTTAGGTGTG+TGG + chr4_2:75542897-75542916 None:intergenic 40.0%
! CTCTGCATGTTATCTGGTTT+AGG + chr4_2:75542904-75542923 None:intergenic 40.0%
AACCAGATAACATGCAGAGA+TGG - chr4_2:75542905-75542924 Msa0622800:three_prime_UTR 40.0%
TTCCATCTCTGCATGTTATC+TGG + chr4_2:75542910-75542929 None:intergenic 40.0%
TGAAACTGAAACCACCAAGA+TGG - chr4_2:75542989-75543008 Msa0622800:CDS 40.0%
TAACATTTAGGCCATCTTGG+TGG + chr4_2:75543003-75543022 None:intergenic 40.0%
TATTCAGCTTATCCAGTTCC+TGG + chr4_2:75543172-75543191 None:intergenic 40.0%
! TTGTAGCCCATCATGTTTTG+TGG - chr4_2:75543295-75543314 Msa0622800:intron 40.0%
AGCCAACCACAAAACATGAT+GGG + chr4_2:75543304-75543323 None:intergenic 40.0%
TAGCCAACCACAAAACATGA+TGG + chr4_2:75543305-75543324 None:intergenic 40.0%
AGGACAAGACTAGAGAATCA+GGG + chr4_2:75543358-75543377 None:intergenic 40.0%
AAGGACAAGACTAGAGAATC+AGG + chr4_2:75543359-75543378 None:intergenic 40.0%
TCACTCATCATCTAGCATCT+TGG + chr4_2:75543423-75543442 None:intergenic 40.0%
GGAGAAGTAAAATGGGGTTA+GGG + chr4_2:75543448-75543467 None:intergenic 40.0%
AGGAGAAGTAAAATGGGGTT+AGG + chr4_2:75543449-75543468 None:intergenic 40.0%
CCGGATAAGCTAATCCAAAT+AGG + chr4_2:75543523-75543542 None:intergenic 40.0%
CAATGCTGAATTGAACAAGC+TGG - chr4_2:75543915-75543934 Msa0622800:CDS 40.0%
CAGTAACTCTCAAAAACTCG+AGG + chr4_2:75543985-75544004 None:intergenic 40.0%
GTGATGCTTGTAAATGGAAC+TGG - chr4_2:75544021-75544040 Msa0622800:CDS 40.0%
!! GAACTGGCTTGAAGATTGAA+AGG - chr4_2:75544037-75544056 Msa0622800:CDS 40.0%
ATAATCCACAATTGGAGGTG+GGG + chr4_2:75544121-75544140 None:intergenic 40.0%
CATAATCCACAATTGGAGGT+GGG + chr4_2:75544122-75544141 None:intergenic 40.0%
AGTCCATAATCCACAATTGG+AGG + chr4_2:75544126-75544145 None:intergenic 40.0%
GTCAGTCCATAATCCACAAT+TGG + chr4_2:75544129-75544148 None:intergenic 40.0%
TACAGTTGGCAACAGCAACT+TGG + chr4_2:75542758-75542777 None:intergenic 45.0%
CACTCTTGGCAAGTTTAGCT+CGG + chr4_2:75543081-75543100 None:intergenic 45.0%
!! TAAACTTGCCAAGAGTGCTG+TGG - chr4_2:75543084-75543103 Msa0622800:CDS 45.0%
ACTAGTAGATGAGCTGAACC+AGG - chr4_2:75543151-75543170 Msa0622800:CDS 45.0%
GCATACCTAAGTACTTGGAG+AGG - chr4_2:75543255-75543274 Msa0622800:intron 45.0%
! AGCCCATCATGTTTTGTGGT+TGG - chr4_2:75543299-75543318 Msa0622800:intron 45.0%
TCTTGTCCTTGAATGTGCAC+AGG - chr4_2:75543369-75543388 Msa0622800:intron 45.0%
TAGCAACCTGTGCACATTCA+AGG + chr4_2:75543378-75543397 None:intergenic 45.0%
GTTGCTAGTTACCAGTGTCA+TGG - chr4_2:75543391-75543410 Msa0622800:intron 45.0%
CCATAATCCACAATTGGAGG+TGG + chr4_2:75544123-75544142 None:intergenic 45.0%
! CCACCTCCAATTGTGGATTA+TGG - chr4_2:75544120-75544139 Msa0622800:five_prime_UTR 45.0%
!!! TTGTCAATTTTGGGGTCCCT+TGG - chr4_2:75544172-75544191 Msa0622800:five_prime_UTR 45.0%
AGAAGGACTAAACAGGCCAA+GGG + chr4_2:75544191-75544210 None:intergenic 45.0%
TACAGTTGGCAACAGCAACT+TGG + chr4_2:75542758-75542777 None:intergenic 45.0%
CACTCTTGGCAAGTTTAGCT+CGG + chr4_2:75543081-75543100 None:intergenic 45.0%
!! TAAACTTGCCAAGAGTGCTG+TGG - chr4_2:75543084-75543103 Msa0622800:CDS 45.0%
ACTAGTAGATGAGCTGAACC+AGG - chr4_2:75543151-75543170 Msa0622800:CDS 45.0%
GCATACCTAAGTACTTGGAG+AGG - chr4_2:75543255-75543274 Msa0622800:intron 45.0%
! AGCCCATCATGTTTTGTGGT+TGG - chr4_2:75543299-75543318 Msa0622800:intron 45.0%
TCTTGTCCTTGAATGTGCAC+AGG - chr4_2:75543369-75543388 Msa0622800:intron 45.0%
TAGCAACCTGTGCACATTCA+AGG + chr4_2:75543378-75543397 None:intergenic 45.0%
GTTGCTAGTTACCAGTGTCA+TGG - chr4_2:75543391-75543410 Msa0622800:intron 45.0%
CCATAATCCACAATTGGAGG+TGG + chr4_2:75544123-75544142 None:intergenic 45.0%
! CCACCTCCAATTGTGGATTA+TGG - chr4_2:75544120-75544139 Msa0622800:five_prime_UTR 45.0%
!!! TTGTCAATTTTGGGGTCCCT+TGG - chr4_2:75544172-75544191 Msa0622800:five_prime_UTR 45.0%
AGAAGGACTAAACAGGCCAA+GGG + chr4_2:75544191-75544210 None:intergenic 45.0%
TTGGCAACAGCAACTTGGCT+TGG + chr4_2:75542753-75542772 None:intergenic 50.0%
ATCTGCAAGTTCAACTCCCC+AGG - chr4_2:75542965-75542984 Msa0622800:CDS 50.0%
TCTGCAAGTTCAACTCCCCA+GGG - chr4_2:75542966-75542985 Msa0622800:CDS 50.0%
GTGGTTTCAGTTTCACCCTG+GGG + chr4_2:75542984-75543003 None:intergenic 50.0%
GGTGGTTTCAGTTTCACCCT+GGG + chr4_2:75542985-75543004 None:intergenic 50.0%
TGGTGGTTTCAGTTTCACCC+TGG + chr4_2:75542986-75543005 None:intergenic 50.0%
GTGAGTACAGCAACCATAGC+CGG - chr4_2:75543030-75543049 Msa0622800:CDS 50.0%
!! GCTTCTCTAAGGTGGAAGAC+AGG + chr4_2:75543112-75543131 None:intergenic 50.0%
GTCTTCCACCTTAGAGAAGC+TGG - chr4_2:75543112-75543131 Msa0622800:CDS 50.0%
TTCCACCTTAGAGAAGCTGG+TGG - chr4_2:75543115-75543134 Msa0622800:CDS 50.0%
AGATGAGCTGAACCAGGAAC+TGG - chr4_2:75543157-75543176 Msa0622800:CDS 50.0%
CTTGGAAGCAACCATGACAC+TGG + chr4_2:75543405-75543424 None:intergenic 50.0%
AACGCGGTATATGCTCGAGT+AGG - chr4_2:75543883-75543902 Msa0622800:CDS 50.0%
CGGTATATGCTCGAGTAGGA+GGG - chr4_2:75543887-75543906 Msa0622800:CDS 50.0%
GGTATATGCTCGAGTAGGAG+GGG - chr4_2:75543888-75543907 Msa0622800:CDS 50.0%
GAGAAGGACTAAACAGGCCA+AGG + chr4_2:75544192-75544211 None:intergenic 50.0%
TTGGCAACAGCAACTTGGCT+TGG + chr4_2:75542753-75542772 None:intergenic 50.0%
ATCTGCAAGTTCAACTCCCC+AGG - chr4_2:75542965-75542984 Msa0622800:CDS 50.0%
TCTGCAAGTTCAACTCCCCA+GGG - chr4_2:75542966-75542985 Msa0622800:CDS 50.0%
GTGGTTTCAGTTTCACCCTG+GGG + chr4_2:75542984-75543003 None:intergenic 50.0%
GGTGGTTTCAGTTTCACCCT+GGG + chr4_2:75542985-75543004 None:intergenic 50.0%
TGGTGGTTTCAGTTTCACCC+TGG + chr4_2:75542986-75543005 None:intergenic 50.0%
GTGAGTACAGCAACCATAGC+CGG - chr4_2:75543030-75543049 Msa0622800:CDS 50.0%
!! GCTTCTCTAAGGTGGAAGAC+AGG + chr4_2:75543112-75543131 None:intergenic 50.0%
GTCTTCCACCTTAGAGAAGC+TGG - chr4_2:75543112-75543131 Msa0622800:CDS 50.0%
TTCCACCTTAGAGAAGCTGG+TGG - chr4_2:75543115-75543134 Msa0622800:CDS 50.0%
AGATGAGCTGAACCAGGAAC+TGG - chr4_2:75543157-75543176 Msa0622800:CDS 50.0%
CTTGGAAGCAACCATGACAC+TGG + chr4_2:75543405-75543424 None:intergenic 50.0%
AACGCGGTATATGCTCGAGT+AGG - chr4_2:75543883-75543902 Msa0622800:CDS 50.0%
CGGTATATGCTCGAGTAGGA+GGG - chr4_2:75543887-75543906 Msa0622800:CDS 50.0%
GGTATATGCTCGAGTAGGAG+GGG - chr4_2:75543888-75543907 Msa0622800:CDS 50.0%
GAGAAGGACTAAACAGGCCA+AGG + chr4_2:75544192-75544211 None:intergenic 50.0%
! CTGTTACCGGCTGATTCTGC+CGG + chr4_2:75543052-75543071 None:intergenic 55.0%
GGCAGAATCAGCCGGTAACA+GGG - chr4_2:75543051-75543070 Msa0622800:CDS 55.0%
! CTTGGCAAGTTTAGCTCGGC+AGG + chr4_2:75543077-75543096 None:intergenic 55.0%
GACAGGATCCACAGCACTCT+TGG + chr4_2:75543095-75543114 None:intergenic 55.0%
! AGCCACCAGCTTCTCTAAGG+TGG + chr4_2:75543120-75543139 None:intergenic 55.0%
!! TTTCACGGCGTAAGAGCACC+AGG - chr4_2:75543227-75543246 Msa0622800:intron 55.0%
GCGGTATATGCTCGAGTAGG+AGG - chr4_2:75543886-75543905 Msa0622800:CDS 55.0%
CTCTTCCCCACCTCCAATTG+TGG - chr4_2:75544113-75544132 Msa0622800:five_prime_UTR 55.0%
! CTGTTACCGGCTGATTCTGC+CGG + chr4_2:75543052-75543071 None:intergenic 55.0%
GGCAGAATCAGCCGGTAACA+GGG - chr4_2:75543051-75543070 Msa0622800:CDS 55.0%
! CTTGGCAAGTTTAGCTCGGC+AGG + chr4_2:75543077-75543096 None:intergenic 55.0%
GACAGGATCCACAGCACTCT+TGG + chr4_2:75543095-75543114 None:intergenic 55.0%
! AGCCACCAGCTTCTCTAAGG+TGG + chr4_2:75543120-75543139 None:intergenic 55.0%
!! TTTCACGGCGTAAGAGCACC+AGG - chr4_2:75543227-75543246 Msa0622800:intron 55.0%
GCGGTATATGCTCGAGTAGG+AGG - chr4_2:75543886-75543905 Msa0622800:CDS 55.0%
CTCTTCCCCACCTCCAATTG+TGG - chr4_2:75544113-75544132 Msa0622800:five_prime_UTR 55.0%
CCATAGCCGGCAGAATCAGC+CGG - chr4_2:75543043-75543062 Msa0622800:CDS 60.0%
CGGCAGAATCAGCCGGTAAC+AGG - chr4_2:75543050-75543069 Msa0622800:CDS 60.0%
GCGAGCCACCAGCTTCTCTA+AGG + chr4_2:75543123-75543142 None:intergenic 60.0%
CCATAGCCGGCAGAATCAGC+CGG - chr4_2:75543043-75543062 Msa0622800:CDS 60.0%
CGGCAGAATCAGCCGGTAAC+AGG - chr4_2:75543050-75543069 Msa0622800:CDS 60.0%
GCGAGCCACCAGCTTCTCTA+AGG + chr4_2:75543123-75543142 None:intergenic 60.0%
! CCGGCTGATTCTGCCGGCTA+TGG + chr4_2:75543046-75543065 None:intergenic 65.0%
AGCTCGGCAGGCCCTGTTAC+CGG + chr4_2:75543065-75543084 None:intergenic 65.0%
! CCGGCTGATTCTGCCGGCTA+TGG + chr4_2:75543046-75543065 None:intergenic 65.0%
AGCTCGGCAGGCCCTGTTAC+CGG + chr4_2:75543065-75543084 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 75542713 75544372 75542713 ID=Msa0622800;Name=Msa0622800
chr4_2 mRNA 75542713 75544372 75542713 ID=Msa0622800-mRNA-1;Parent=Msa0622800;Name=Msa0622800-mRNA-1;_AED=0.37;_eAED=0.37;_QI=304|1|1|1|1|1|2|220|233
chr4_2 exon 75542713 75543212 75542713 ID=Msa0622800-mRNA-1:exon:22958;Parent=Msa0622800-mRNA-1
chr4_2 exon 75543647 75544372 75543647 ID=Msa0622800-mRNA-1:exon:22957;Parent=Msa0622800-mRNA-1
chr4_2 five_prime_UTR 75544069 75544372 75544069 ID=Msa0622800-mRNA-1:five_prime_utr;Parent=Msa0622800-mRNA-1
chr4_2 CDS 75543647 75544068 75543647 ID=Msa0622800-mRNA-1:cds;Parent=Msa0622800-mRNA-1
chr4_2 CDS 75542933 75543212 75542933 ID=Msa0622800-mRNA-1:cds;Parent=Msa0622800-mRNA-1
chr4_2 three_prime_UTR 75542713 75542932 75542713 ID=Msa0622800-mRNA-1:three_prime_utr;Parent=Msa0622800-mRNA-1
Gene Sequence

>Msa0622800

ATGTTAACAGCAAGTGAGTACAGCAACCATAGCCGGCAGAATCAGCCGGTAACAGGGCCTGCCGAGCTAAACTTGCCAAGAGTGCTGTGGATCCTGTCTTCCACCTTAGAGAAGCTGGTGGCTCGCAATGAAAAACTAGTAGATGAGCTGAACCAGGAACTGGATAAGCTGAATAATGGCACAGTAAGATTAGGGAAGAGCTTGAATTTGTTTCACGGCGTAAGAGCACCAGGAATAAGCATACCTAAGTACTTGGAGAGGATATACAAGTACACTAATTGTAGCCCATCATGTTTTGTGGTTGGCTATGTGTATATAGACATGCTGACTCACAAGCACCCTGATTCTCTAGTCTTGTCCTTGAATGTGCACAGGTTGCTAGTTACCAGTGTCATGGTTGCTTCCAAGATGCTAGATGATGAACATTATAACAACGCGGTATATGCTCGAGTAGGAGGGGTTAGCAATGCTGAATTGAACAAGCTGGAATTAGAGTTGCTCTTTCTGTTAGATTTTAAAGTTATGGTAAGCCCTCGAGTTTTTGAGAGTTACTGTTTGCACTTAGAAAAGGTGATGCTTGTAAATGGAACTGGCTTGAAGATTGAAAGGACATTGTCACCAAAATCTTTTGAGACTGAAATATCAGTTGAAGATCAGCAAAGCTCTTCCCCACCTCCAATTGTGGATTATGGACTGACATAA

Protein sequence

>Msa0622800

MLTASEYSNHSRQNQPVTGPAELNLPRVLWILSSTLEKLVARNEKLVDELNQELDKLNNGTVRLGKSLNLFHGVRAPGISIPKYLERIYKYTNCSPSCFVVGYVYIDMLTHKHPDSLVLSLNVHRLLVTSVMVASKMLDDEHYNNAVYARVGGVSNAELNKLELELLFLLDFKVMVSPRVFESYCLHLEKVMLVNGTGLKIERTLSPKSFETEISVEDQQSSSPPPIVDYGLT*