AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0261020


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0261020 MtrunA17_Chr2g0322921 97.854 233 5 0 1 233 1 233 1.93e-169 466
Msa0261020 MtrunA17_Chr7g0250121 42.211 199 100 3 25 222 10 194 2.07e-53 171
Msa0261020 MtrunA17_Chr8g0335971 42.211 199 98 2 25 222 9 191 4.79e-51 164
Msa0261020 MtrunA17_Chr7g0259831 43.781 201 97 3 23 223 28 212 5.80e-47 154
Msa0261020 MtrunA17_Chr7g0231431 43.333 180 93 2 26 205 29 199 1.11e-46 154
Msa0261020 MtrunA17_Chr4g0012811 42.623 183 94 3 24 205 27 199 9.35e-36 126
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0261020 AT3G21870.1 65.025 203 51 4 16 209 12 203 5.53e-75 226
Msa0261020 AT2G44740.1 49.686 159 79 1 34 192 8 165 2.58e-50 163
Msa0261020 AT3G63120.2 53.676 136 59 2 67 202 61 192 3.88e-47 155
Msa0261020 AT3G63120.1 53.676 136 59 2 67 202 61 192 3.88e-47 155
Msa0261020 AT3G05327.1 40.341 176 88 3 20 190 25 188 6.08e-43 144
Msa0261020 AT2G45080.1 41.436 181 93 3 25 205 27 194 2.53e-42 143
Msa0261020 AT3G60550.1 40.299 201 104 5 5 205 16 200 5.89e-42 142
Msa0261020 AT5G61650.1 39.109 202 101 4 12 211 9 190 3.12e-41 140
Msa0261020 AT5G07450.1 40.000 170 90 2 25 194 20 177 6.66e-40 137

Find 90 sgRNAs with CRISPR-Local

Find 241 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTCTTTCTGTTGTCAATTT+TGG 0.004375 2_2:-59151446 Msa0261020:three_prime_UTR
GATACGAACTTTGTCAAATT+TGG 0.168594 2_2:-59151328 Msa0261020:three_prime_UTR
CTTCATGGCTAAGCAATTAT+TGG 0.188133 2_2:-59151391 Msa0261020:three_prime_UTR
ATTTCAGTCTCAAAAGATTT+TGG 0.218198 2_2:+59151539 None:intergenic
CCACCTCCAATTGTGGATTA+TGG 0.232331 2_2:-59151488 Msa0261020:CDS
CGGCAGAATCAGCCGGTAAC+AGG 0.242921 2_2:-59152557 Msa0261020:CDS
AAGCCACTAATATTATTTAA+AGG 0.245893 2_2:+59152775 None:intergenic
CTCACTTGCTGTTAACATTT+AGG 0.270807 2_2:+59152595 None:intergenic
TTCCATCTCTGCATGTTATC+TGG 0.284086 2_2:+59152700 None:intergenic
GAAAAGGTGATGCTTGTAAA+TGG 0.293233 2_2:-59151593 Msa0261020:CDS
TATTCATATAAATAAGAAAA+TGG 0.307247 2_2:+59151356 None:intergenic
AGCTCGGCAGGCCCTGTTAC+CGG 0.321332 2_2:+59152545 None:intergenic
TATTCAGCTTATCCAGTTCC+TGG 0.321877 2_2:+59152438 None:intergenic
AGCCACTAATATTATTTAAA+GGG 0.325528 2_2:+59152776 None:intergenic
TACTTAGGTATGCTTATTCC+TGG 0.349163 2_2:+59152362 None:intergenic
ATTTGCTATTTGAATGGTTA+AGG 0.353311 2_2:+59152671 None:intergenic
CTCTGCATGTTATCTGGTTT+AGG 0.359379 2_2:+59152706 None:intergenic
AATAATGGCACAGTAAGATT+AGG 0.366725 2_2:-59152419 Msa0261020:CDS
GCAATTATTGGATTGTTCAT+TGG 0.367010 2_2:-59151379 Msa0261020:three_prime_UTR
AAGGACAAGACTAGAGAATC+AGG 0.374269 2_2:+59152251 None:intergenic
CTCCAAGAATAACAAGCTTT+AGG 0.381462 2_2:+59151250 None:intergenic
GCGAGCCACCAGCTTCTCTA+AGG 0.404470 2_2:+59152487 None:intergenic
GGTGGTTTCAGTTTCACCCT+GGG 0.410600 2_2:+59152625 None:intergenic
AAGAGCTTGAATTTGTTTCA+TGG 0.414892 2_2:-59152395 Msa0261020:CDS
TGTTAACATTTAGGCCATCT+TGG 0.425164 2_2:+59152604 None:intergenic
GCTCATATTTGCTATTTGAA+TGG 0.426866 2_2:+59152665 None:intergenic
GAACTGGATAAGCTGAATAA+TGG 0.429459 2_2:-59152434 Msa0261020:CDS
GTCTTCCACCTTAGAGAAGC+TGG 0.436418 2_2:-59152495 Msa0261020:CDS
GACAGGATCCACAGCACTCT+TGG 0.440490 2_2:+59152515 None:intergenic
CCGGCTGATTCTGCCGGCTA+TGG 0.443270 2_2:+59152564 None:intergenic
GTCAGTCCATAATCCACAAT+TGG 0.446292 2_2:+59151482 None:intergenic
TAGCAACCTGTGCACATTCA+AGG 0.446626 2_2:+59152232 None:intergenic
ATAATGGCACAGTAAGATTA+GGG 0.454796 2_2:-59152418 Msa0261020:CDS
ATCTGCAAGTTCAACTCCCC+AGG 0.462607 2_2:-59152642 Msa0261020:five_prime_UTR
TTACTGTTTGCACTTAGAAA+AGG 0.462960 2_2:-59151609 Msa0261020:CDS
CGTGCGCAAAACAAAATAAG+AGG 0.465273 2_2:+59152884 None:intergenic
TGGTGGTTTCAGTTTCACCC+TGG 0.468050 2_2:+59152624 None:intergenic
CTTGGCAAGTTTAGCTCGGC+AGG 0.469634 2_2:+59152533 None:intergenic
CTCTTCCCCACCTCCAATTG+TGG 0.470595 2_2:-59151495 Msa0261020:CDS
AGATGAGCTGAACCAGGAAC+TGG 0.473686 2_2:-59152450 Msa0261020:CDS
TCACTCATCATCTAGCATCT+TGG 0.474488 2_2:+59152187 None:intergenic
GTATATTCTCAGTAATGGCT+TGG 0.475056 2_2:-59152830 Msa0261020:five_prime_UTR
GTGATGCTTGTAAATGGAAC+TGG 0.476530 2_2:-59151587 Msa0261020:CDS
CAACTGTATATTCTCAGTAA+TGG 0.483096 2_2:-59152835 Msa0261020:five_prime_UTR
CTGTTACCGGCTGATTCTGC+CGG 0.485975 2_2:+59152558 None:intergenic
TTGGCAACAGCAACTTGGCT+TGG 0.497654 2_2:+59152855 None:intergenic
AATAAGCATACCTAAGTACT+TGG 0.500784 2_2:-59152357 Msa0261020:CDS
CAATGCTGAATTGAACAAGC+TGG 0.503751 2_2:-59151693 Msa0261020:CDS
TTTCATGGCGTAAGAGCACC+AGG 0.507498 2_2:-59152380 Msa0261020:CDS
GTGAGTACAGCAACCATAGC+CGG 0.507563 2_2:-59152577 Msa0261020:CDS
GCGGTATATGCTCGAGTAGG+AGG 0.514577 2_2:-59151722 Msa0261020:CDS
TATATCCTCTCCAAGTACTT+AGG 0.518675 2_2:+59152347 None:intergenic
GCTTCTCTAAGGTGGAAGAC+AGG 0.527781 2_2:+59152498 None:intergenic
TACAGTTGGCAACAGCAACT+TGG 0.532604 2_2:+59152850 None:intergenic
CCATAATCCACAATTGGAGG+TGG 0.534813 2_2:+59151488 None:intergenic
GCCACTAATATTATTTAAAG+GGG 0.538210 2_2:+59152777 None:intergenic
TAACATTTAGGCCATCTTGG+TGG 0.539033 2_2:+59152607 None:intergenic
GAGAAGGACTAAACAGGCCA+AGG 0.541366 2_2:+59151419 None:intergenic
TCTTGTCCTTGAATGTGCAC+AGG 0.542755 2_2:-59152238 Msa0261020:CDS
CACTCTTGGCAAGTTTAGCT+CGG 0.548577 2_2:+59152529 None:intergenic
CCATAGCCGGCAGAATCAGC+CGG 0.548917 2_2:-59152564 Msa0261020:CDS
TAGCCAACCACAAAACATGA+TGG 0.554883 2_2:+59152305 None:intergenic
AACCAGATAACATGCAGAGA+TGG 0.558467 2_2:-59152702 Msa0261020:five_prime_UTR
AGCCACCAGCTTCTCTAAGG+TGG 0.562842 2_2:+59152490 None:intergenic
TCTAAGACAAATCACAGATG+TGG 0.563145 2_2:-59152803 Msa0261020:five_prime_UTR
TGTTATCTGGTTTAGGTGTG+TGG 0.564260 2_2:+59152713 None:intergenic
CGGTATATGCTCGAGTAGGA+GGG 0.564893 2_2:-59151721 Msa0261020:CDS
GGCAGAATCAGCCGGTAACA+GGG 0.571866 2_2:-59152556 Msa0261020:CDS
CTAAGACAAATCACAGATGT+GGG 0.574363 2_2:-59152802 Msa0261020:five_prime_UTR
GAACTGGCTTGAAGATTGAA+AGG 0.577156 2_2:-59151571 Msa0261020:CDS
CATAATCCACAATTGGAGGT+GGG 0.587923 2_2:+59151489 None:intergenic
ATAATCCACAATTGGAGGTG+GGG 0.591202 2_2:+59151490 None:intergenic
ACTAGTAGATGAGCTGAACC+AGG 0.595950 2_2:-59152456 Msa0261020:CDS
GTTGCTAGTTACCAGTGTCA+TGG 0.598576 2_2:-59152216 Msa0261020:CDS
AGCCAACCACAAAACATGAT+GGG 0.609259 2_2:+59152306 None:intergenic
TGAAACTGAAACCACCAAGA+TGG 0.611290 2_2:-59152618 Msa0261020:five_prime_UTR
CATTACTGAGAATATACAGT+TGG 0.613107 2_2:+59152836 None:intergenic
GTGGTTTCAGTTTCACCCTG+GGG 0.613967 2_2:+59152626 None:intergenic
CTTGGAAGCAACCATGACAC+TGG 0.617633 2_2:+59152205 None:intergenic
AGTCCATAATCCACAATTGG+AGG 0.620702 2_2:+59151485 None:intergenic
AGAAGGACTAAACAGGCCAA+GGG 0.627699 2_2:+59151420 None:intergenic
CCACTAATATTATTTAAAGG+GGG 0.648222 2_2:+59152778 None:intergenic
AATGCGGTATATGCTCGAGT+AGG 0.651476 2_2:-59151725 Msa0261020:CDS
GGTATATGCTCGAGTAGGAG+GGG 0.653824 2_2:-59151720 Msa0261020:CDS
GCATACCTAAGTACTTGGAG+AGG 0.659601 2_2:-59152352 Msa0261020:CDS
AGGACAAGACTAGAGAATCA+GGG 0.662861 2_2:+59152252 None:intergenic
TCTGCAAGTTCAACTCCCCA+GGG 0.663591 2_2:-59152641 Msa0261020:five_prime_UTR
TTCCACCTTAGAGAAGCTGG+TGG 0.676985 2_2:-59152492 Msa0261020:CDS
TAAACTTGCCAAGAGTGCTG+TGG 0.680744 2_2:-59152523 Msa0261020:CDS
CTGTAGACATTATAACAATG+CGG 0.746155 2_2:-59151741 Msa0261020:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATTCATATAAATAAGAAAA+TGG + chr2_2:59152797-59152816 None:intergenic 10.0%
!! TATTCATATAAATAAGAAAA+TGG + chr2_2:59152797-59152816 None:intergenic 10.0%
!! AGCCACTAATATTATTTAAA+GGG + chr2_2:59151377-59151396 None:intergenic 20.0%
!! AAGCCACTAATATTATTTAA+AGG + chr2_2:59151378-59151397 None:intergenic 20.0%
!!! ATGTTTTATTGCACTATTAA+AGG - chr2_2:59152020-59152039 Msa0261020:intron 20.0%
!! AATAAGCAAAAAACAACTTA+TGG + chr2_2:59152155-59152174 None:intergenic 20.0%
!! CTTAATTAAGCTATTTATCA+AGG - chr2_2:59152293-59152312 Msa0261020:CDS 20.0%
!! TAAAACTAACCATACTTAAA+AGG + chr2_2:59152319-59152338 None:intergenic 20.0%
!!! TCTGTTAGATTTTAAAGTTA+TGG - chr2_2:59152496-59152515 Msa0261020:CDS 20.0%
!! AGCCACTAATATTATTTAAA+GGG + chr2_2:59151377-59151396 None:intergenic 20.0%
!! AAGCCACTAATATTATTTAA+AGG + chr2_2:59151378-59151397 None:intergenic 20.0%
!!! ATGTTTTATTGCACTATTAA+AGG - chr2_2:59152020-59152039 Msa0261020:intron 20.0%
!! AATAAGCAAAAAACAACTTA+TGG + chr2_2:59152155-59152174 None:intergenic 20.0%
!! CTTAATTAAGCTATTTATCA+AGG - chr2_2:59152293-59152312 Msa0261020:CDS 20.0%
!! TAAAACTAACCATACTTAAA+AGG + chr2_2:59152319-59152338 None:intergenic 20.0%
!!! TCTGTTAGATTTTAAAGTTA+TGG - chr2_2:59152496-59152515 Msa0261020:CDS 20.0%
! CCACTAATATTATTTAAAGG+GGG + chr2_2:59151375-59151394 None:intergenic 25.0%
! GCCACTAATATTATTTAAAG+GGG + chr2_2:59151376-59151395 None:intergenic 25.0%
!!! ATTTGCTATTTGAATGGTTA+AGG + chr2_2:59151482-59151501 None:intergenic 25.0%
! GCAATAAAACATTAAGCTTT+AGG + chr2_2:59152012-59152031 None:intergenic 25.0%
!!! ATTGTTTTTCTAAGCTATCA+TGG + chr2_2:59152190-59152209 None:intergenic 25.0%
!! ATTTCAGTCTCAAAAGATTT+TGG + chr2_2:59152614-59152633 None:intergenic 25.0%
!! TTTCTTTCTGTTGTCAATTT+TGG - chr2_2:59152704-59152723 Msa0261020:five_prime_UTR 25.0%
!! TTCTTTCTGTTGTCAATTTT+GGG - chr2_2:59152705-59152724 Msa0261020:five_prime_UTR 25.0%
!!! ATTTTTCCTAAAGCTTGTTA+TGG - chr2_2:59152894-59152913 Msa0261020:five_prime_UTR 25.0%
! CCACTAATATTATTTAAAGG+GGG + chr2_2:59151375-59151394 None:intergenic 25.0%
! GCCACTAATATTATTTAAAG+GGG + chr2_2:59151376-59151395 None:intergenic 25.0%
!!! ATTTGCTATTTGAATGGTTA+AGG + chr2_2:59151482-59151501 None:intergenic 25.0%
! GCAATAAAACATTAAGCTTT+AGG + chr2_2:59152012-59152031 None:intergenic 25.0%
!!! ATTGTTTTTCTAAGCTATCA+TGG + chr2_2:59152190-59152209 None:intergenic 25.0%
!! ATTTCAGTCTCAAAAGATTT+TGG + chr2_2:59152614-59152633 None:intergenic 25.0%
!! TTTCTTTCTGTTGTCAATTT+TGG - chr2_2:59152704-59152723 Msa0261020:five_prime_UTR 25.0%
!! TTCTTTCTGTTGTCAATTTT+GGG - chr2_2:59152705-59152724 Msa0261020:five_prime_UTR 25.0%
CATTACTGAGAATATACAGT+TGG + chr2_2:59151317-59151336 None:intergenic 30.0%
CAACTGTATATTCTCAGTAA+TGG - chr2_2:59151315-59151334 Msa0261020:three_prime_UTR 30.0%
CCCCCTTTAAATAATATTAG+TGG - chr2_2:59151372-59151391 Msa0261020:three_prime_UTR 30.0%
!! GCTCATATTTGCTATTTGAA+TGG + chr2_2:59151488-59151507 None:intergenic 30.0%
AATAATGGCACAGTAAGATT+AGG - chr2_2:59151731-59151750 Msa0261020:CDS 30.0%
ATAATGGCACAGTAAGATTA+GGG - chr2_2:59151732-59151751 Msa0261020:CDS 30.0%
! AAGAGCTTGAATTTGTTTCA+TGG - chr2_2:59151755-59151774 Msa0261020:intron 30.0%
AATAAGCATACCTAAGTACT+TGG - chr2_2:59151793-59151812 Msa0261020:intron 30.0%
!! AGCTTTAGGAGAAGTAAAAT+GGG + chr2_2:59151998-59152017 None:intergenic 30.0%
!! AAGCTTTAGGAGAAGTAAAA+TGG + chr2_2:59151999-59152018 None:intergenic 30.0%
! AGGAACTGAAGTTGATTTAA+AGG - chr2_2:59152040-59152059 Msa0261020:intron 30.0%
! AGTTGATTTAAAGGCCTATT+TGG - chr2_2:59152049-59152068 Msa0261020:intron 30.0%
TTTATGCTAATAGACAAACC+CGG + chr2_2:59152085-59152104 None:intergenic 30.0%
!! TTATCAAGGCCTTTTAAGTA+TGG - chr2_2:59152307-59152326 Msa0261020:CDS 30.0%
ATTATGTGCATCATGTTCTT+TGG - chr2_2:59152377-59152396 Msa0261020:CDS 30.0%
CTGTAGACATTATAACAATG+CGG - chr2_2:59152409-59152428 Msa0261020:CDS 30.0%
TTACTGTTTGCACTTAGAAA+AGG - chr2_2:59152541-59152560 Msa0261020:CDS 30.0%
! TCTTTCTGTTGTCAATTTTG+GGG - chr2_2:59152706-59152725 Msa0261020:five_prime_UTR 30.0%
GCAATTATTGGATTGTTCAT+TGG - chr2_2:59152771-59152790 Msa0261020:five_prime_UTR 30.0%
GATACGAACTTTGTCAAATT+TGG - chr2_2:59152822-59152841 Msa0261020:five_prime_UTR 30.0%
CATTACTGAGAATATACAGT+TGG + chr2_2:59151317-59151336 None:intergenic 30.0%
CAACTGTATATTCTCAGTAA+TGG - chr2_2:59151315-59151334 Msa0261020:three_prime_UTR 30.0%
CCCCCTTTAAATAATATTAG+TGG - chr2_2:59151372-59151391 Msa0261020:three_prime_UTR 30.0%
!! GCTCATATTTGCTATTTGAA+TGG + chr2_2:59151488-59151507 None:intergenic 30.0%
AATAATGGCACAGTAAGATT+AGG - chr2_2:59151731-59151750 Msa0261020:CDS 30.0%
ATAATGGCACAGTAAGATTA+GGG - chr2_2:59151732-59151751 Msa0261020:CDS 30.0%
! AAGAGCTTGAATTTGTTTCA+TGG - chr2_2:59151755-59151774 Msa0261020:intron 30.0%
AATAAGCATACCTAAGTACT+TGG - chr2_2:59151793-59151812 Msa0261020:intron 30.0%
!! AGCTTTAGGAGAAGTAAAAT+GGG + chr2_2:59151998-59152017 None:intergenic 30.0%
!! AAGCTTTAGGAGAAGTAAAA+TGG + chr2_2:59151999-59152018 None:intergenic 30.0%
! AGGAACTGAAGTTGATTTAA+AGG - chr2_2:59152040-59152059 Msa0261020:intron 30.0%
! AGTTGATTTAAAGGCCTATT+TGG - chr2_2:59152049-59152068 Msa0261020:intron 30.0%
TTTATGCTAATAGACAAACC+CGG + chr2_2:59152085-59152104 None:intergenic 30.0%
!! TTATCAAGGCCTTTTAAGTA+TGG - chr2_2:59152307-59152326 Msa0261020:CDS 30.0%
ATTATGTGCATCATGTTCTT+TGG - chr2_2:59152377-59152396 Msa0261020:CDS 30.0%
CTGTAGACATTATAACAATG+CGG - chr2_2:59152409-59152428 Msa0261020:CDS 30.0%
TTACTGTTTGCACTTAGAAA+AGG - chr2_2:59152541-59152560 Msa0261020:CDS 30.0%
! TCTTTCTGTTGTCAATTTTG+GGG - chr2_2:59152706-59152725 Msa0261020:five_prime_UTR 30.0%
GCAATTATTGGATTGTTCAT+TGG - chr2_2:59152771-59152790 Msa0261020:five_prime_UTR 30.0%
GATACGAACTTTGTCAAATT+TGG - chr2_2:59152822-59152841 Msa0261020:five_prime_UTR 30.0%
GTATATTCTCAGTAATGGCT+TGG - chr2_2:59151320-59151339 Msa0261020:three_prime_UTR 35.0%
! TCTAAGACAAATCACAGATG+TGG - chr2_2:59151347-59151366 Msa0261020:three_prime_UTR 35.0%
CTAAGACAAATCACAGATGT+GGG - chr2_2:59151348-59151367 Msa0261020:three_prime_UTR 35.0%
TGTTAACATTTAGGCCATCT+TGG + chr2_2:59151549-59151568 None:intergenic 35.0%
!! CTCACTTGCTGTTAACATTT+AGG + chr2_2:59151558-59151577 None:intergenic 35.0%
GAACTGGATAAGCTGAATAA+TGG - chr2_2:59151716-59151735 Msa0261020:CDS 35.0%
TACTTAGGTATGCTTATTCC+TGG + chr2_2:59151791-59151810 None:intergenic 35.0%
TATATCCTCTCCAAGTACTT+AGG + chr2_2:59151806-59151825 None:intergenic 35.0%
!! GCTTTAGGAGAAGTAAAATG+GGG + chr2_2:59151997-59152016 None:intergenic 35.0%
!! CCTATTTGGATTAGCTTATC+CGG - chr2_2:59152063-59152082 Msa0261020:intron 35.0%
!! CTATTTGGATTAGCTTATCC+GGG - chr2_2:59152064-59152083 Msa0261020:intron 35.0%
AGTAACTCTCAAAAACTCGA+GGG + chr2_2:59152526-59152545 None:intergenic 35.0%
GAAAAGGTGATGCTTGTAAA+TGG - chr2_2:59152557-59152576 Msa0261020:CDS 35.0%
GAAAAAGAGAAGGACTAAAC+AGG + chr2_2:59152740-59152759 None:intergenic 35.0%
! AGTCCTTCTCTTTTTCTTCA+TGG - chr2_2:59152744-59152763 Msa0261020:five_prime_UTR 35.0%
TAGCCATGAAGAAAAAGAGA+AGG + chr2_2:59152750-59152769 None:intergenic 35.0%
CTTCATGGCTAAGCAATTAT+TGG - chr2_2:59152759-59152778 Msa0261020:five_prime_UTR 35.0%
GTATATTCTCAGTAATGGCT+TGG - chr2_2:59151320-59151339 Msa0261020:three_prime_UTR 35.0%
! TCTAAGACAAATCACAGATG+TGG - chr2_2:59151347-59151366 Msa0261020:three_prime_UTR 35.0%
CTAAGACAAATCACAGATGT+GGG - chr2_2:59151348-59151367 Msa0261020:three_prime_UTR 35.0%
TGTTAACATTTAGGCCATCT+TGG + chr2_2:59151549-59151568 None:intergenic 35.0%
!! CTCACTTGCTGTTAACATTT+AGG + chr2_2:59151558-59151577 None:intergenic 35.0%
GAACTGGATAAGCTGAATAA+TGG - chr2_2:59151716-59151735 Msa0261020:CDS 35.0%
TACTTAGGTATGCTTATTCC+TGG + chr2_2:59151791-59151810 None:intergenic 35.0%
TATATCCTCTCCAAGTACTT+AGG + chr2_2:59151806-59151825 None:intergenic 35.0%
!! GCTTTAGGAGAAGTAAAATG+GGG + chr2_2:59151997-59152016 None:intergenic 35.0%
!! CCTATTTGGATTAGCTTATC+CGG - chr2_2:59152063-59152082 Msa0261020:intron 35.0%
!! CTATTTGGATTAGCTTATCC+GGG - chr2_2:59152064-59152083 Msa0261020:intron 35.0%
AGTAACTCTCAAAAACTCGA+GGG + chr2_2:59152526-59152545 None:intergenic 35.0%
GAAAAGGTGATGCTTGTAAA+TGG - chr2_2:59152557-59152576 Msa0261020:CDS 35.0%
GAAAAAGAGAAGGACTAAAC+AGG + chr2_2:59152740-59152759 None:intergenic 35.0%
! AGTCCTTCTCTTTTTCTTCA+TGG - chr2_2:59152744-59152763 Msa0261020:five_prime_UTR 35.0%
TAGCCATGAAGAAAAAGAGA+AGG + chr2_2:59152750-59152769 None:intergenic 35.0%
CTTCATGGCTAAGCAATTAT+TGG - chr2_2:59152759-59152778 Msa0261020:five_prime_UTR 35.0%
CGTGCGCAAAACAAAATAAG+AGG + chr2_2:59151269-59151288 None:intergenic 40.0%
! TGTTATCTGGTTTAGGTGTG+TGG + chr2_2:59151440-59151459 None:intergenic 40.0%
! CTCTGCATGTTATCTGGTTT+AGG + chr2_2:59151447-59151466 None:intergenic 40.0%
AACCAGATAACATGCAGAGA+TGG - chr2_2:59151448-59151467 Msa0261020:three_prime_UTR 40.0%
TTCCATCTCTGCATGTTATC+TGG + chr2_2:59151453-59151472 None:intergenic 40.0%
TGAAACTGAAACCACCAAGA+TGG - chr2_2:59151532-59151551 Msa0261020:CDS 40.0%
TAACATTTAGGCCATCTTGG+TGG + chr2_2:59151546-59151565 None:intergenic 40.0%
TATTCAGCTTATCCAGTTCC+TGG + chr2_2:59151715-59151734 None:intergenic 40.0%
! TTGTAGCCCATCATGTTTTG+TGG - chr2_2:59151838-59151857 Msa0261020:intron 40.0%
AGCCAACCACAAAACATGAT+GGG + chr2_2:59151847-59151866 None:intergenic 40.0%
TAGCCAACCACAAAACATGA+TGG + chr2_2:59151848-59151867 None:intergenic 40.0%
AGGACAAGACTAGAGAATCA+GGG + chr2_2:59151901-59151920 None:intergenic 40.0%
AAGGACAAGACTAGAGAATC+AGG + chr2_2:59151902-59151921 None:intergenic 40.0%
TCACTCATCATCTAGCATCT+TGG + chr2_2:59151966-59151985 None:intergenic 40.0%
GGAGAAGTAAAATGGGGTTA+GGG + chr2_2:59151991-59152010 None:intergenic 40.0%
AGGAGAAGTAAAATGGGGTT+AGG + chr2_2:59151992-59152011 None:intergenic 40.0%
CCGGATAAGCTAATCCAAAT+AGG + chr2_2:59152066-59152085 None:intergenic 40.0%
CAATGCTGAATTGAACAAGC+TGG - chr2_2:59152457-59152476 Msa0261020:CDS 40.0%
CAGTAACTCTCAAAAACTCG+AGG + chr2_2:59152527-59152546 None:intergenic 40.0%
GTGATGCTTGTAAATGGAAC+TGG - chr2_2:59152563-59152582 Msa0261020:CDS 40.0%
!! GAACTGGCTTGAAGATTGAA+AGG - chr2_2:59152579-59152598 Msa0261020:CDS 40.0%
ATAATCCACAATTGGAGGTG+GGG + chr2_2:59152663-59152682 None:intergenic 40.0%
CATAATCCACAATTGGAGGT+GGG + chr2_2:59152664-59152683 None:intergenic 40.0%
AGTCCATAATCCACAATTGG+AGG + chr2_2:59152668-59152687 None:intergenic 40.0%
GTCAGTCCATAATCCACAAT+TGG + chr2_2:59152671-59152690 None:intergenic 40.0%
CGTGCGCAAAACAAAATAAG+AGG + chr2_2:59151269-59151288 None:intergenic 40.0%
! TGTTATCTGGTTTAGGTGTG+TGG + chr2_2:59151440-59151459 None:intergenic 40.0%
! CTCTGCATGTTATCTGGTTT+AGG + chr2_2:59151447-59151466 None:intergenic 40.0%
AACCAGATAACATGCAGAGA+TGG - chr2_2:59151448-59151467 Msa0261020:three_prime_UTR 40.0%
TTCCATCTCTGCATGTTATC+TGG + chr2_2:59151453-59151472 None:intergenic 40.0%
TGAAACTGAAACCACCAAGA+TGG - chr2_2:59151532-59151551 Msa0261020:CDS 40.0%
TAACATTTAGGCCATCTTGG+TGG + chr2_2:59151546-59151565 None:intergenic 40.0%
TATTCAGCTTATCCAGTTCC+TGG + chr2_2:59151715-59151734 None:intergenic 40.0%
! TTGTAGCCCATCATGTTTTG+TGG - chr2_2:59151838-59151857 Msa0261020:intron 40.0%
AGCCAACCACAAAACATGAT+GGG + chr2_2:59151847-59151866 None:intergenic 40.0%
TAGCCAACCACAAAACATGA+TGG + chr2_2:59151848-59151867 None:intergenic 40.0%
AGGACAAGACTAGAGAATCA+GGG + chr2_2:59151901-59151920 None:intergenic 40.0%
AAGGACAAGACTAGAGAATC+AGG + chr2_2:59151902-59151921 None:intergenic 40.0%
TCACTCATCATCTAGCATCT+TGG + chr2_2:59151966-59151985 None:intergenic 40.0%
GGAGAAGTAAAATGGGGTTA+GGG + chr2_2:59151991-59152010 None:intergenic 40.0%
AGGAGAAGTAAAATGGGGTT+AGG + chr2_2:59151992-59152011 None:intergenic 40.0%
CCGGATAAGCTAATCCAAAT+AGG + chr2_2:59152066-59152085 None:intergenic 40.0%
CAATGCTGAATTGAACAAGC+TGG - chr2_2:59152457-59152476 Msa0261020:CDS 40.0%
CAGTAACTCTCAAAAACTCG+AGG + chr2_2:59152527-59152546 None:intergenic 40.0%
GTGATGCTTGTAAATGGAAC+TGG - chr2_2:59152563-59152582 Msa0261020:CDS 40.0%
!! GAACTGGCTTGAAGATTGAA+AGG - chr2_2:59152579-59152598 Msa0261020:CDS 40.0%
ATAATCCACAATTGGAGGTG+GGG + chr2_2:59152663-59152682 None:intergenic 40.0%
CATAATCCACAATTGGAGGT+GGG + chr2_2:59152664-59152683 None:intergenic 40.0%
AGTCCATAATCCACAATTGG+AGG + chr2_2:59152668-59152687 None:intergenic 40.0%
GTCAGTCCATAATCCACAAT+TGG + chr2_2:59152671-59152690 None:intergenic 40.0%
TACAGTTGGCAACAGCAACT+TGG + chr2_2:59151303-59151322 None:intergenic 45.0%
CACTCTTGGCAAGTTTAGCT+CGG + chr2_2:59151624-59151643 None:intergenic 45.0%
!! TAAACTTGCCAAGAGTGCTG+TGG - chr2_2:59151627-59151646 Msa0261020:CDS 45.0%
ACTAGTAGATGAGCTGAACC+AGG - chr2_2:59151694-59151713 Msa0261020:CDS 45.0%
GCATACCTAAGTACTTGGAG+AGG - chr2_2:59151798-59151817 Msa0261020:intron 45.0%
! AGCCCATCATGTTTTGTGGT+TGG - chr2_2:59151842-59151861 Msa0261020:intron 45.0%
TCTTGTCCTTGAATGTGCAC+AGG - chr2_2:59151912-59151931 Msa0261020:intron 45.0%
TAGCAACCTGTGCACATTCA+AGG + chr2_2:59151921-59151940 None:intergenic 45.0%
GTTGCTAGTTACCAGTGTCA+TGG - chr2_2:59151934-59151953 Msa0261020:intron 45.0%
AATGCGGTATATGCTCGAGT+AGG - chr2_2:59152425-59152444 Msa0261020:CDS 45.0%
CCATAATCCACAATTGGAGG+TGG + chr2_2:59152665-59152684 None:intergenic 45.0%
! CCACCTCCAATTGTGGATTA+TGG - chr2_2:59152662-59152681 Msa0261020:five_prime_UTR 45.0%
!!! TTGTCAATTTTGGGGTCCCT+TGG - chr2_2:59152714-59152733 Msa0261020:five_prime_UTR 45.0%
AGAAGGACTAAACAGGCCAA+GGG + chr2_2:59152733-59152752 None:intergenic 45.0%
TACAGTTGGCAACAGCAACT+TGG + chr2_2:59151303-59151322 None:intergenic 45.0%
CACTCTTGGCAAGTTTAGCT+CGG + chr2_2:59151624-59151643 None:intergenic 45.0%
!! TAAACTTGCCAAGAGTGCTG+TGG - chr2_2:59151627-59151646 Msa0261020:CDS 45.0%
ACTAGTAGATGAGCTGAACC+AGG - chr2_2:59151694-59151713 Msa0261020:CDS 45.0%
GCATACCTAAGTACTTGGAG+AGG - chr2_2:59151798-59151817 Msa0261020:intron 45.0%
! AGCCCATCATGTTTTGTGGT+TGG - chr2_2:59151842-59151861 Msa0261020:intron 45.0%
TCTTGTCCTTGAATGTGCAC+AGG - chr2_2:59151912-59151931 Msa0261020:intron 45.0%
TAGCAACCTGTGCACATTCA+AGG + chr2_2:59151921-59151940 None:intergenic 45.0%
GTTGCTAGTTACCAGTGTCA+TGG - chr2_2:59151934-59151953 Msa0261020:intron 45.0%
AATGCGGTATATGCTCGAGT+AGG - chr2_2:59152425-59152444 Msa0261020:CDS 45.0%
CCATAATCCACAATTGGAGG+TGG + chr2_2:59152665-59152684 None:intergenic 45.0%
! CCACCTCCAATTGTGGATTA+TGG - chr2_2:59152662-59152681 Msa0261020:five_prime_UTR 45.0%
!!! TTGTCAATTTTGGGGTCCCT+TGG - chr2_2:59152714-59152733 Msa0261020:five_prime_UTR 45.0%
AGAAGGACTAAACAGGCCAA+GGG + chr2_2:59152733-59152752 None:intergenic 45.0%
TTGGCAACAGCAACTTGGCT+TGG + chr2_2:59151298-59151317 None:intergenic 50.0%
ATCTGCAAGTTCAACTCCCC+AGG - chr2_2:59151508-59151527 Msa0261020:CDS 50.0%
TCTGCAAGTTCAACTCCCCA+GGG - chr2_2:59151509-59151528 Msa0261020:CDS 50.0%
GTGGTTTCAGTTTCACCCTG+GGG + chr2_2:59151527-59151546 None:intergenic 50.0%
GGTGGTTTCAGTTTCACCCT+GGG + chr2_2:59151528-59151547 None:intergenic 50.0%
TGGTGGTTTCAGTTTCACCC+TGG + chr2_2:59151529-59151548 None:intergenic 50.0%
GTGAGTACAGCAACCATAGC+CGG - chr2_2:59151573-59151592 Msa0261020:CDS 50.0%
!! GCTTCTCTAAGGTGGAAGAC+AGG + chr2_2:59151655-59151674 None:intergenic 50.0%
GTCTTCCACCTTAGAGAAGC+TGG - chr2_2:59151655-59151674 Msa0261020:CDS 50.0%
TTCCACCTTAGAGAAGCTGG+TGG - chr2_2:59151658-59151677 Msa0261020:CDS 50.0%
AGATGAGCTGAACCAGGAAC+TGG - chr2_2:59151700-59151719 Msa0261020:CDS 50.0%
!! TTTCATGGCGTAAGAGCACC+AGG - chr2_2:59151770-59151789 Msa0261020:intron 50.0%
CTTGGAAGCAACCATGACAC+TGG + chr2_2:59151948-59151967 None:intergenic 50.0%
CGGTATATGCTCGAGTAGGA+GGG - chr2_2:59152429-59152448 Msa0261020:CDS 50.0%
GGTATATGCTCGAGTAGGAG+GGG - chr2_2:59152430-59152449 Msa0261020:CDS 50.0%
GAGAAGGACTAAACAGGCCA+AGG + chr2_2:59152734-59152753 None:intergenic 50.0%
TTGGCAACAGCAACTTGGCT+TGG + chr2_2:59151298-59151317 None:intergenic 50.0%
ATCTGCAAGTTCAACTCCCC+AGG - chr2_2:59151508-59151527 Msa0261020:CDS 50.0%
TCTGCAAGTTCAACTCCCCA+GGG - chr2_2:59151509-59151528 Msa0261020:CDS 50.0%
GTGGTTTCAGTTTCACCCTG+GGG + chr2_2:59151527-59151546 None:intergenic 50.0%
GGTGGTTTCAGTTTCACCCT+GGG + chr2_2:59151528-59151547 None:intergenic 50.0%
TGGTGGTTTCAGTTTCACCC+TGG + chr2_2:59151529-59151548 None:intergenic 50.0%
GTGAGTACAGCAACCATAGC+CGG - chr2_2:59151573-59151592 Msa0261020:CDS 50.0%
!! GCTTCTCTAAGGTGGAAGAC+AGG + chr2_2:59151655-59151674 None:intergenic 50.0%
GTCTTCCACCTTAGAGAAGC+TGG - chr2_2:59151655-59151674 Msa0261020:CDS 50.0%
TTCCACCTTAGAGAAGCTGG+TGG - chr2_2:59151658-59151677 Msa0261020:CDS 50.0%
AGATGAGCTGAACCAGGAAC+TGG - chr2_2:59151700-59151719 Msa0261020:CDS 50.0%
!! TTTCATGGCGTAAGAGCACC+AGG - chr2_2:59151770-59151789 Msa0261020:intron 50.0%
CTTGGAAGCAACCATGACAC+TGG + chr2_2:59151948-59151967 None:intergenic 50.0%
CGGTATATGCTCGAGTAGGA+GGG - chr2_2:59152429-59152448 Msa0261020:CDS 50.0%
GGTATATGCTCGAGTAGGAG+GGG - chr2_2:59152430-59152449 Msa0261020:CDS 50.0%
GAGAAGGACTAAACAGGCCA+AGG + chr2_2:59152734-59152753 None:intergenic 50.0%
! CTGTTACCGGCTGATTCTGC+CGG + chr2_2:59151595-59151614 None:intergenic 55.0%
GGCAGAATCAGCCGGTAACA+GGG - chr2_2:59151594-59151613 Msa0261020:CDS 55.0%
! CTTGGCAAGTTTAGCTCGGC+AGG + chr2_2:59151620-59151639 None:intergenic 55.0%
GACAGGATCCACAGCACTCT+TGG + chr2_2:59151638-59151657 None:intergenic 55.0%
! AGCCACCAGCTTCTCTAAGG+TGG + chr2_2:59151663-59151682 None:intergenic 55.0%
GCGGTATATGCTCGAGTAGG+AGG - chr2_2:59152428-59152447 Msa0261020:CDS 55.0%
CTCTTCCCCACCTCCAATTG+TGG - chr2_2:59152655-59152674 Msa0261020:five_prime_UTR 55.0%
! CTGTTACCGGCTGATTCTGC+CGG + chr2_2:59151595-59151614 None:intergenic 55.0%
GGCAGAATCAGCCGGTAACA+GGG - chr2_2:59151594-59151613 Msa0261020:CDS 55.0%
! CTTGGCAAGTTTAGCTCGGC+AGG + chr2_2:59151620-59151639 None:intergenic 55.0%
GACAGGATCCACAGCACTCT+TGG + chr2_2:59151638-59151657 None:intergenic 55.0%
! AGCCACCAGCTTCTCTAAGG+TGG + chr2_2:59151663-59151682 None:intergenic 55.0%
GCGGTATATGCTCGAGTAGG+AGG - chr2_2:59152428-59152447 Msa0261020:CDS 55.0%
CTCTTCCCCACCTCCAATTG+TGG - chr2_2:59152655-59152674 Msa0261020:five_prime_UTR 55.0%
CCATAGCCGGCAGAATCAGC+CGG - chr2_2:59151586-59151605 Msa0261020:CDS 60.0%
CGGCAGAATCAGCCGGTAAC+AGG - chr2_2:59151593-59151612 Msa0261020:CDS 60.0%
GCGAGCCACCAGCTTCTCTA+AGG + chr2_2:59151666-59151685 None:intergenic 60.0%
CCATAGCCGGCAGAATCAGC+CGG - chr2_2:59151586-59151605 Msa0261020:CDS 60.0%
CGGCAGAATCAGCCGGTAAC+AGG - chr2_2:59151593-59151612 Msa0261020:CDS 60.0%
GCGAGCCACCAGCTTCTCTA+AGG + chr2_2:59151666-59151685 None:intergenic 60.0%
! CCGGCTGATTCTGCCGGCTA+TGG + chr2_2:59151589-59151608 None:intergenic 65.0%
AGCTCGGCAGGCCCTGTTAC+CGG + chr2_2:59151608-59151627 None:intergenic 65.0%
! CCGGCTGATTCTGCCGGCTA+TGG + chr2_2:59151589-59151608 None:intergenic 65.0%
AGCTCGGCAGGCCCTGTTAC+CGG + chr2_2:59151608-59151627 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 59151258 59152914 59151258 ID=Msa0261020;Name=Msa0261020
chr2_2 mRNA 59151258 59152914 59151258 ID=Msa0261020-mRNA-1;Parent=Msa0261020;Name=Msa0261020-mRNA-1;_AED=0.29;_eAED=0.29;_QI=302|1|1|1|1|1|2|220|233
chr2_2 exon 59151258 59151757 59151258 ID=Msa0261020-mRNA-1:exon:18257;Parent=Msa0261020-mRNA-1
chr2_2 exon 59152191 59152914 59152191 ID=Msa0261020-mRNA-1:exon:18256;Parent=Msa0261020-mRNA-1
chr2_2 five_prime_UTR 59152613 59152914 59152613 ID=Msa0261020-mRNA-1:five_prime_utr;Parent=Msa0261020-mRNA-1
chr2_2 CDS 59152191 59152612 59152191 ID=Msa0261020-mRNA-1:cds;Parent=Msa0261020-mRNA-1
chr2_2 CDS 59151478 59151757 59151478 ID=Msa0261020-mRNA-1:cds;Parent=Msa0261020-mRNA-1
chr2_2 three_prime_UTR 59151258 59151477 59151258 ID=Msa0261020-mRNA-1:three_prime_utr;Parent=Msa0261020-mRNA-1
Gene Sequence

>Msa0261020

ATGTTAACAGCAAGTGAGTACAGCAACCATAGCCGGCAGAATCAGCCGGTAACAGGGCCTGCCGAGCTAAACTTGCCAAGAGTGCTGTGGATCCTGTCTTCCACCTTAGAGAAGCTGGTGGCTCGCAATGAAAAACTAGTAGATGAGCTGAACCAGGAACTGGATAAGCTGAATAATGGCACAGTAAGATTAGGGAAGAGCTTGAATTTGTTTCATGGCGTAAGAGCACCAGGAATAAGCATACCTAAGTACTTGGAGAGGATATACAAGTACACTAATTGTAGCCCATCATGTTTTGTGGTTGGCTATGTGTATATAGACATGCTGACTCACAAGCACCCTGATTCTCTAGTCTTGTCCTTGAATGTGCACAGGTTGCTAGTTACCAGTGTCATGGTTGCTTCCAAGATGCTAGATGATGAACATTATAACAATGCGGTATATGCTCGAGTAGGAGGGGTTAGCAATGCTGAATTGAACAAGCTGGAATTAGAGTTGCTCTTTCTGTTAGATTTTAAAGTTATGGTAAGCCCTCGAGTTTTTGAGAGTTACTGTTTGCACTTAGAAAAGGTGATGCTTGTAAATGGAACTGGCTTGAAGATTGAAAGGACATTGTCACCAAAATCTTTTGAGACTGAAATATCAGTTGAAGATCAGCAAAGCTCTTCCCCACCTCCAATTGTGGATTATGGACTGACATAA

Protein sequence

>Msa0261020

MLTASEYSNHSRQNQPVTGPAELNLPRVLWILSSTLEKLVARNEKLVDELNQELDKLNNGTVRLGKSLNLFHGVRAPGISIPKYLERIYKYTNCSPSCFVVGYVYIDMLTHKHPDSLVLSLNVHRLLVTSVMVASKMLDDEHYNNAVYARVGGVSNAELNKLELELLFLLDFKVMVSPRVFESYCLHLEKVMLVNGTGLKIERTLSPKSFETEISVEDQQSSSPPPIVDYGLT*