AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0220390

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0220390 MtrunA17_Chr2g0323971 97.407 270 7 0 1 270 1 270 0.0 541
Msa0220390 MtrunA17_Chr7g0237741 75.000 276 54 5 1 270 1 267 3.00e-131 372
Msa0220390 MtrunA17_Chr4g0075481 37.097 124 73 2 95 216 36 156 2.49e-18 84.7
Msa0220390 MtrunA17_Chr2g0316221 29.762 168 102 4 77 239 436 592 4.63e-17 80.9
Msa0220390 MtrunA17_Chr3g0124261 34.127 126 74 2 101 226 459 575 4.61e-15 74.7
Msa0220390 MtrunA17_Chr4g0027201 36.154 130 74 3 97 217 401 530 6.56e-15 74.3
Msa0220390 MtrunA17_Chr2g0304261 35.043 117 71 2 95 209 37 150 7.26e-15 74.3
Msa0220390 MtrunA17_Chr1g0149561 34.783 115 69 4 98 209 40 151 2.81e-14 72.4
Msa0220390 MtrunA17_Chr3g0115681 30.061 163 90 5 103 253 429 579 3.64e-14 72.0
Msa0220390 MtrunA17_Chr8g0393041 33.607 122 74 1 98 219 479 593 4.46e-14 72.0
Msa0220390 MtrunA17_Chr5g0425741 33.628 113 68 1 101 213 447 552 5.10e-14 71.6
Msa0220390 MtrunA17_Chr8g0339141 38.462 117 64 1 98 206 402 518 7.89e-14 71.2
Msa0220390 MtrunA17_Chr2g0311461 32.710 107 67 2 102 207 5 107 1.10e-13 69.3
Msa0220390 MtrunA17_Chr5g0398901 30.000 110 70 1 98 207 2 104 1.83e-12 67.0
Msa0220390 MtrunA17_Chr8g0377771 37.903 124 67 2 92 206 392 514 1.86e-12 67.0
Msa0220390 MtrunA17_Chr7g0255551 34.146 123 73 1 92 206 371 493 2.72e-12 66.6
Msa0220390 MtrunA17_Chr1g0152361 33.333 147 87 2 98 233 227 373 5.06e-12 65.5
Msa0220390 MtrunA17_Chr7g0234801 36.585 123 70 2 92 206 388 510 8.64e-12 65.1
Msa0220390 MtrunA17_Chr4g0025271 32.174 115 76 1 102 214 107 221 2.70e-11 63.5
Msa0220390 MtrunA17_Chr1g0159731 27.703 148 93 3 62 209 27 160 2.82e-11 61.2
Msa0220390 MtrunA17_Chr4g0019501 28.682 129 82 1 98 216 184 312 4.52e-11 62.4
Msa0220390 MtrunA17_Chr3g0097231 29.927 137 87 2 95 231 8 135 5.34e-11 62.4
Msa0220390 MtrunA17_Chr4g0050371 31.667 120 75 1 102 221 492 604 6.39e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0220390 AT4G30480.2 63.347 251 80 3 19 269 38 276 1.21e-108 315
Msa0220390 AT4G30480.1 53.371 178 71 3 19 196 38 203 1.02e-56 181
Msa0220390 AT4G30480.3 46.269 134 60 3 19 152 38 159 5.71e-30 110
Msa0220390 AT1G62390.1 36.800 125 74 2 95 217 48 169 9.57e-18 83.2
Msa0220390 AT3G58620.2 30.172 116 74 1 100 215 451 559 5.18e-15 75.1
Msa0220390 AT3G58620.1 30.172 116 74 1 100 215 451 559 5.40e-15 75.1
Msa0220390 AT1G53300.1 25.185 135 94 1 79 213 446 573 1.21e-13 71.2
Msa0220390 AT3G25230.1 37.086 151 80 3 98 240 400 543 1.27e-13 70.9
Msa0220390 AT3G25230.2 37.086 151 80 3 98 240 400 543 1.52e-13 70.5
Msa0220390 AT2G42580.1 29.565 115 74 1 101 215 461 568 2.25e-13 70.1
Msa0220390 AT4G32070.2 33.333 123 77 2 97 217 50 169 2.79e-13 70.1
Msa0220390 AT4G32070.1 33.333 123 77 2 97 217 50 169 2.79e-13 70.1
Msa0220390 AT2G25290.2 31.783 129 83 2 97 223 51 176 3.44e-13 69.7
Msa0220390 AT2G25290.3 31.783 129 83 2 97 223 51 176 3.44e-13 69.7
Msa0220390 AT2G25290.4 31.783 129 83 2 97 223 51 176 3.44e-13 69.7
Msa0220390 AT2G25290.1 31.783 129 83 2 97 223 51 176 3.44e-13 69.7
Msa0220390 AT1G56090.1 33.333 108 67 2 101 207 9 112 4.13e-13 68.2
Msa0220390 AT4G12400.1 34.545 110 65 1 98 207 2 104 4.19e-13 69.3
Msa0220390 AT4G12400.2 34.545 110 65 1 98 207 2 104 4.54e-13 69.3
Msa0220390 AT4G12400.2 27.536 138 90 3 81 215 349 479 9.98e-11 62.4
Msa0220390 AT5G65160.1 29.825 114 73 1 100 213 472 578 6.89e-13 68.6
Msa0220390 AT1G56090.2 33.333 108 67 2 101 207 83 186 9.81e-13 67.8
Msa0220390 AT3G54010.1 31.452 124 77 2 92 207 394 517 2.98e-12 67.0
Msa0220390 AT3G54010.2 31.452 124 77 2 92 207 304 427 4.39e-12 66.2
Msa0220390 AT5G20360.5 29.530 149 92 4 78 216 8 153 5.18e-12 66.2
Msa0220390 AT5G20360.6 29.530 149 92 4 78 216 8 153 5.18e-12 66.2
Msa0220390 AT3G21640.1 33.577 137 70 5 98 220 179 308 6.22e-12 65.5
Msa0220390 AT1G56440.1 25.595 168 110 3 94 261 80 232 1.08e-11 65.1
Msa0220390 AT5G20360.3 28.369 141 96 3 78 216 96 233 1.16e-11 65.1
Msa0220390 AT5G20360.1 28.369 141 96 3 78 216 106 243 1.24e-11 65.1
Msa0220390 AT5G20360.2 28.369 141 96 3 78 216 106 243 1.24e-11 65.1
Msa0220390 AT1G56440.2 26.163 172 104 4 94 261 70 222 1.41e-11 64.7
Msa0220390 AT1G62740.1 25.503 149 101 2 70 215 351 492 1.64e-11 64.7
Msa0220390 AT1G62740.1 30.909 110 69 1 98 207 2 104 9.63e-11 62.4
Msa0220390 AT5G20360.7 30.328 122 80 3 97 216 65 183 3.51e-11 63.5
Msa0220390 AT5G20360.4 30.328 122 80 3 97 216 65 183 3.51e-11 63.5
Msa0220390 AT5G21990.1 32.174 115 76 1 102 214 107 221 5.78e-11 62.8

Find 74 sgRNAs with CRISPR-Local

Find 374 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTCATTCCAACAGTAATTT+TGG 0.148968 2_1:+68582963 Msa0220390:exon
AACTCTCTATTGGGCCGCTT+TGG 0.264239 2_1:+68582884 Msa0220390:CDS
AGATATGGGCAACTCTCTAT+TGG 0.311616 2_1:+68582874 Msa0220390:CDS
GCAAATGAAGCAAAGGTAGA+AGG 0.322186 2_1:+68579882 Msa0220390:CDS
AGGAACCAGTGTTTGGATCT+TGG 0.328792 2_1:-68582934 None:intergenic
GATTGCACCGCCGGCGTCAT+TGG 0.328809 2_1:-68577927 None:intergenic
TGGAGTGTGCTTTCTGAAAA+TGG 0.332339 2_1:+68580025 Msa0220390:CDS
ACTCTCTATTGGGCCGCTTT+GGG 0.341561 2_1:+68582885 Msa0220390:CDS
AGGATTCAATTCTAATGCTT+TGG 0.356837 2_1:-68581112 None:intergenic
TGCAGCAAAACTGAAAGATA+TGG 0.364427 2_1:+68582859 Msa0220390:intron
CATTCTCTTGCTCTGTCTGT+TGG 0.399426 2_1:-68577988 None:intergenic
AGCCCCTTGCTGCGGTAAAA+CGG 0.406141 2_1:+68581643 Msa0220390:CDS
TGACGAGGAGGAACTGAAAC+AGG 0.409643 2_1:+68578069 Msa0220390:CDS
GCCCCTTGCTGCGGTAAAAC+GGG 0.412779 2_1:+68581644 Msa0220390:CDS
ACAGAATAGGAACCAGTGTT+TGG 0.413729 2_1:-68582941 None:intergenic
AATCAACCAATGCCCTTTGA+AGG 0.423355 2_1:-68583099 None:intergenic
TCCACAGACGAAGGCATGTC+TGG 0.430069 2_1:-68579975 None:intergenic
CTCATGTTTGATTGCACCGC+CGG 0.434990 2_1:-68577936 None:intergenic
TCCTATGTATGTCAAAGCTT+TGG 0.435215 2_1:+68581131 Msa0220390:CDS
TGCTCAACCAAAATTACTGT+TGG 0.436068 2_1:-68582970 None:intergenic
TTTCCCAGCTTGATCATTTG+AGG 0.437938 2_1:-68581604 None:intergenic
TTTCAGTTCCTCCTCGTCAA+TGG 0.441903 2_1:-68578065 None:intergenic
TTGCTGTGGAAAGATTTGTT+TGG 0.451140 2_1:-68577779 None:intergenic
CGTTGTTCATGCAAGTCACT+AGG 0.462405 2_1:+68583022 Msa0220390:three_prime_UTR
TCTCTTGCTCTGTCTGTTGG+TGG 0.466794 2_1:-68577985 None:intergenic
GTCGACGTCGCTGCCGAGAT+CGG 0.474913 2_1:-68577903 None:intergenic
GATATGGGCAACTCTCTATT+GGG 0.476887 2_1:+68582875 Msa0220390:CDS
TTCCCAGCTTGATCATTTGA+GGG 0.480120 2_1:-68581603 None:intergenic
GCTGCCGAGATCGGTGTCAC+TGG 0.486340 2_1:-68577894 None:intergenic
TTATTTCCTTCAAAGGGCAT+TGG 0.502526 2_1:+68583093 Msa0220390:three_prime_UTR
GATCCCTCAAATGATCAAGC+TGG 0.505591 2_1:+68581600 Msa0220390:CDS
GCAAGAGAATGAGAAGGAAA+AGG 0.524111 2_1:+68578000 Msa0220390:CDS
CAGCAAAACCTTCTCGAAGA+TGG 0.529140 2_1:+68577796 Msa0220390:exon
ACCAAAGCTTTGACATACAT+AGG 0.530413 2_1:-68581132 None:intergenic
GTTGGTTGAAGCTGCGTCGG+AGG 0.530506 2_1:-68577846 None:intergenic
GCAGCAAAACTGAAAGATAT+GGG 0.537722 2_1:+68582860 Msa0220390:intron
ACCGCCAGTGACACCGATCT+CGG 0.539820 2_1:+68577890 Msa0220390:CDS
ATCCCTCAAATGATCAAGCT+GGG 0.547698 2_1:+68581601 Msa0220390:CDS
AAGATGAAGGAAGAAATGAT+TGG 0.548059 2_1:+68581669 Msa0220390:CDS
CTGTTGGAATGAGACAGAAT+AGG 0.550017 2_1:-68582954 None:intergenic
CAAATGAAGCAAAGGTAGAA+GGG 0.553738 2_1:+68579883 Msa0220390:CDS
AGCACACTCCACGGTTTGCA+TGG 0.556081 2_1:-68580013 None:intergenic
AAAGCCGTCGGAAACGTCGT+TGG 0.556526 2_1:-68577864 None:intergenic
TTGGTTGAAGCTGCGTCGGA+GGG 0.566073 2_1:-68577845 None:intergenic
TGATTGATTCATCGTGTGAA+GGG 0.567494 2_1:+68583117 Msa0220390:three_prime_UTR
GTCGTTGGTTGAAGCTGCGT+CGG 0.567590 2_1:-68577849 None:intergenic
GTCAAAGCTTTGGTAAGAAG+AGG 0.569077 2_1:+68581141 Msa0220390:CDS
AAATTTGAACTCACCAGCAA+TGG 0.574648 2_1:-68581199 None:intergenic
GCCGAGATCGGTGTCACTGG+CGG 0.579855 2_1:-68577891 None:intergenic
GACAGAGCAAGAGAATGAGA+AGG 0.582418 2_1:+68577994 Msa0220390:CDS
GATTACTACCATCTTCGAGA+AGG 0.590011 2_1:-68577804 None:intergenic
GATTGATTCATCGTGTGAAG+GGG 0.590091 2_1:+68583118 Msa0220390:three_prime_UTR
GGTTCAAGCAAATGAAGCAA+AGG 0.590887 2_1:+68579875 Msa0220390:CDS
GAGCAAAGTCATGAAAGCGT+TGG 0.594662 2_1:+68582988 Msa0220390:three_prime_UTR
GCCAGACATGCCTTCGTCTG+TGG 0.595164 2_1:+68579974 Msa0220390:CDS
GGTAAAACGGGAAAAGATGA+AGG 0.595712 2_1:+68581656 Msa0220390:CDS
TCGGTTAGAGCCCCTTGCTG+CGG 0.599340 2_1:+68581635 Msa0220390:CDS
GACGTCGACGCCAATGACGC+CGG 0.605482 2_1:+68577917 Msa0220390:CDS
TTGATTGATTCATCGTGTGA+AGG 0.606648 2_1:+68583116 Msa0220390:three_prime_UTR
AATACTAGCTTAATCGACAC+TGG 0.609649 2_1:-68583289 None:intergenic
TCAACCAACGACGTTTCCGA+CGG 0.612975 2_1:+68577860 Msa0220390:CDS
AGCTTTGGTAAGAAGAGGAG+AGG 0.630745 2_1:+68581146 Msa0220390:CDS
AAGCTGGGAAAGCTATTCGT+CGG 0.635597 2_1:+68581616 Msa0220390:CDS
GTCGACGCCAATGACGCCGG+CGG 0.646774 2_1:+68577920 Msa0220390:CDS
TGATGATGCTTCCATTGACG+AGG 0.650209 2_1:+68578054 Msa0220390:CDS
TGATGCTTCCATTGACGAGG+AGG 0.651405 2_1:+68578057 Msa0220390:CDS
GCAGTCCAAGATCCAAACAC+TGG 0.653084 2_1:+68582929 Msa0220390:CDS
CGGCGGTGCAATCAAACATG+AGG 0.656999 2_1:+68577937 Msa0220390:CDS
GAGCGTATTTCCACAGACGA+AGG 0.658091 2_1:-68579984 None:intergenic
GTCAATGGAAGCATCATCAG+AGG 0.662737 2_1:-68578050 None:intergenic
TGTAGATGCAAAGTACGAGG+AGG 0.669056 2_1:+68579917 Msa0220390:CDS
ACTGGCGGTTTCAAAGCCGT+CGG 0.679050 2_1:-68577876 None:intergenic
TCAATATGCCATGCAAACCG+TGG 0.698040 2_1:+68580005 Msa0220390:CDS
TGTCTACACTCATCCCAAAG+CGG 0.713084 2_1:-68582898 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ACTTTATTTTTATTTTTTGT+AGG + chr2_1:68581738-68581757 Msa0220390:intron 10.0%
!!! CTTTATTTTTATTTTTTGTA+GGG + chr2_1:68581739-68581758 Msa0220390:intron 10.0%
!!! TTTATTTTTATTTTTTGTAG+GGG + chr2_1:68581740-68581759 Msa0220390:intron 10.0%
!!! TGGTTTATATATATAATTTT+GGG + chr2_1:68582470-68582489 Msa0220390:intron 10.0%
!!! TTTATTTAAGCTATTTTTTT+AGG + chr2_1:68583227-68583246 Msa0220390:three_prime_UTR 10.0%
!!! TTATTTAAGCTATTTTTTTA+GGG + chr2_1:68583228-68583247 Msa0220390:three_prime_UTR 10.0%
!! AAACTAAAAAATTGTATTGA+AGG - chr2_1:68578814-68578833 None:intergenic 15.0%
!!! AATAATGAAAACAATTCTTT+TGG + chr2_1:68579370-68579389 Msa0220390:intron 15.0%
!!! TTTTTAGTTTATTATTCTTC+CGG - chr2_1:68580269-68580288 None:intergenic 15.0%
!!! AATTAAACTTGTTATGTTAT+CGG - chr2_1:68580618-68580637 None:intergenic 15.0%
!!! TGAGTTCAAATTTTATAATA+GGG + chr2_1:68581209-68581228 Msa0220390:intron 15.0%
!!! CTGGTTTATATATATAATTT+TGG + chr2_1:68582469-68582488 Msa0220390:intron 15.0%
!!! ATTTTATTTCTACTTGTTTT+TGG + chr2_1:68583355-68583374 Msa0220390:three_prime_UTR 15.0%
!! TAATTTAATGTTTGTCCTAA+CGG + chr2_1:68578479-68578498 Msa0220390:intron 20.0%
!! AATCACTATTTCAAAAAAGA+TGG - chr2_1:68578675-68578694 None:intergenic 20.0%
!!! TTTTTTAGTTTCCTCATTTA+AGG + chr2_1:68578823-68578842 Msa0220390:intron 20.0%
!!! TTTTTAGTTTCCTCATTTAA+GGG + chr2_1:68578824-68578843 Msa0220390:intron 20.0%
!! TCAAATCAGTATTAAAAAAC+TGG - chr2_1:68579783-68579802 None:intergenic 20.0%
!! AGATAAATATCTTATCTGAT+TGG - chr2_1:68580096-68580115 None:intergenic 20.0%
!! ACATGAATTCAAACATATAA+AGG - chr2_1:68580170-68580189 None:intergenic 20.0%
!!! AACATAACAAGTTTAATTTC+AGG + chr2_1:68580620-68580639 Msa0220390:intron 20.0%
!! AAAACATGTTAAATTGCTTA+TGG - chr2_1:68580685-68580704 None:intergenic 20.0%
!! AATTTACTATAAATTAGCTC+AGG + chr2_1:68580778-68580797 Msa0220390:intron 20.0%
!!! GTGAGTTCAAATTTTATAAT+AGG + chr2_1:68581208-68581227 Msa0220390:intron 20.0%
!! AAGAACTATACATAAAGTAA+AGG - chr2_1:68581307-68581326 None:intergenic 20.0%
!! AAGAAAAAATAAAAGGGTAA+CGG - chr2_1:68581461-68581480 None:intergenic 20.0%
!! AAATAAATAGTTCTTGAGTT+TGG + chr2_1:68581898-68581917 Msa0220390:intron 20.0%
!!! TTAATTTGTGACTTTATGTT+GGG - chr2_1:68582389-68582408 None:intergenic 20.0%
!!! TTTAATTTGTGACTTTATGT+TGG - chr2_1:68582390-68582409 None:intergenic 20.0%
!!! ATTATCGGTTCATTATTTTA+TGG + chr2_1:68582679-68582698 Msa0220390:intron 20.0%
!! TCAAGAAATAATTATGTGTA+AGG - chr2_1:68582839-68582858 None:intergenic 20.0%
!!! TACAATTTTATTTCCTTCAA+AGG + chr2_1:68583086-68583105 Msa0220390:three_prime_UTR 20.0%
!!! ACAATTTTATTTCCTTCAAA+GGG + chr2_1:68583087-68583106 Msa0220390:three_prime_UTR 20.0%
!!! TAAGTTTTTGATAGTCTTTT+TGG + chr2_1:68583153-68583172 Msa0220390:three_prime_UTR 20.0%
!!! AAGTTTTTGATAGTCTTTTT+GGG + chr2_1:68583154-68583173 Msa0220390:three_prime_UTR 20.0%
!!! AAGTGATTTTTTGTTTTGAG+AGG - chr2_1:68577741-68577760 None:intergenic 25.0%
!!! TTTTGGGTTTTGTTAGTTTT+TGG + chr2_1:68578100-68578119 Msa0220390:intron 25.0%
!!! TTTGGGTTTTGTTAGTTTTT+GGG + chr2_1:68578101-68578120 Msa0220390:intron 25.0%
! TATTATTCATAAGCTTGTCA+AGG + chr2_1:68578294-68578313 Msa0220390:intron 25.0%
!! TTTTCGTAAGCTAAAAGATA+AGG + chr2_1:68578408-68578427 Msa0220390:intron 25.0%
! ATAAGCGCTTATCATATAAA+GGG - chr2_1:68578447-68578466 None:intergenic 25.0%
! TATAAGCGCTTATCATATAA+AGG - chr2_1:68578448-68578467 None:intergenic 25.0%
! AATTTAATGTTTGTCCTAAC+GGG + chr2_1:68578480-68578499 Msa0220390:intron 25.0%
!! GATAGTATAAGAGTGTAATA+AGG - chr2_1:68578506-68578525 None:intergenic 25.0%
! AGTGATATGAGAGAAAATTA+AGG + chr2_1:68578543-68578562 Msa0220390:intron 25.0%
! GTGATATGAGAGAAAATTAA+GGG + chr2_1:68578544-68578563 Msa0220390:intron 25.0%
! CTAAAAAATTGTATTGAAGG+AGG - chr2_1:68578811-68578830 None:intergenic 25.0%
!!! TTTTAGTTTCCTCATTTAAG+GGG + chr2_1:68578825-68578844 Msa0220390:intron 25.0%
!! GGTTCTATTCTATACATTTT+TGG + chr2_1:68579054-68579073 Msa0220390:intron 25.0%
!! TACTTTTGTCTAGTTGTATT+TGG + chr2_1:68579105-68579124 Msa0220390:intron 25.0%
!! TCTAGTTGTATTTGGAATTT+CGG + chr2_1:68579113-68579132 Msa0220390:intron 25.0%
!! AAGAATTTTCTCAACGTAAA+TGG - chr2_1:68579194-68579213 None:intergenic 25.0%
! TAGCAAGTAAAATTAACACA+AGG + chr2_1:68579446-68579465 Msa0220390:intron 25.0%
! AATTAGCAATAATCTAGCTA+TGG - chr2_1:68579708-68579727 None:intergenic 25.0%
!!! TTTTATGTAACAGAAAGCAT+TGG + chr2_1:68579854-68579873 Msa0220390:intron 25.0%
!! GTTTTTCTTACATACTAATC+CGG + chr2_1:68580247-68580266 Msa0220390:intron 25.0%
! TATACAATGACAACACAAAA+TGG - chr2_1:68580382-68580401 None:intergenic 25.0%
! TTTATAGAGGTAAATTACCA+CGG + chr2_1:68580430-68580449 Msa0220390:intron 25.0%
! GTAAAAGTTTAGTTGAAACA+AGG + chr2_1:68580477-68580496 Msa0220390:intron 25.0%
!! AACAAGTTTAATTTCAGGAA+AGG + chr2_1:68580625-68580644 Msa0220390:intron 25.0%
!! ACAAGTTTAATTTCAGGAAA+GGG + chr2_1:68580626-68580645 Msa0220390:intron 25.0%
!! TTTGATTTCTACAAGAAACT+TGG - chr2_1:68580742-68580761 None:intergenic 25.0%
! TCTTGTAGAAATCAAATTTG+AGG + chr2_1:68580746-68580765 Msa0220390:intron 25.0%
! TAGAAATCAAATTTGAGGAT+AGG + chr2_1:68580751-68580770 Msa0220390:intron 25.0%
!! TTATCATCTTTTGCTTAAAC+AGG - chr2_1:68580886-68580905 None:intergenic 25.0%
! TAAGCAAAAGATGATAAGAA+TGG + chr2_1:68580889-68580908 Msa0220390:intron 25.0%
!! TTCAAATTTTATAATAGGGC+AGG + chr2_1:68581213-68581232 Msa0220390:intron 25.0%
!! TCAAATTTTATAATAGGGCA+GGG + chr2_1:68581214-68581233 Msa0220390:intron 25.0%
!! TTTTGCAAATAACTAAGCAA+GGG + chr2_1:68581367-68581386 Msa0220390:intron 25.0%
! AGTTTCTTAATAAGGTTGTA+AGG + chr2_1:68581396-68581415 Msa0220390:intron 25.0%
! GTAATATTAATTGCTAACCT+CGG + chr2_1:68581424-68581443 Msa0220390:intron 25.0%
! TAATATTAATTGCTAACCTC+GGG + chr2_1:68581425-68581444 Msa0220390:intron 25.0%
!!! TAAGTTTTTTTCTGTATTCG+TGG + chr2_1:68581524-68581543 Msa0220390:intron 25.0%
! ATATTTGAAAAACAACGAGA+AGG - chr2_1:68581708-68581727 None:intergenic 25.0%
! TAGGTAACAAATATAATCAG+AGG + chr2_1:68582047-68582066 Msa0220390:intron 25.0%
! TTAAATTTACACCTTGCAAA+CGG - chr2_1:68582108-68582127 None:intergenic 25.0%
! TGATCAAATCTACAACATAA+TGG + chr2_1:68582158-68582177 Msa0220390:intron 25.0%
! ATCACTTTAGACATGTTTAA+GGG - chr2_1:68582191-68582210 None:intergenic 25.0%
!! TAATTTGTGACTTTATGTTG+GGG - chr2_1:68582388-68582407 None:intergenic 25.0%
! ATTCAGACAATCTTTATGTT+TGG - chr2_1:68582507-68582526 None:intergenic 25.0%
!!! AAAAAAAAACTAGTTCTGTC+TGG - chr2_1:68582570-68582589 None:intergenic 25.0%
! TAAACATCGAAGCTTATTAT+CGG + chr2_1:68582664-68582683 Msa0220390:intron 25.0%
!!! TTTTGGGAAAAATATCAAGT+TGG + chr2_1:68583170-68583189 Msa0220390:three_prime_UTR 25.0%
!!! TATTTCTACTTGTTTTTGGT+TGG + chr2_1:68583359-68583378 Msa0220390:three_prime_UTR 25.0%
!!! ATTTCTACTTGTTTTTGGTT+GGG + chr2_1:68583360-68583379 Msa0220390:three_prime_UTR 25.0%
! TGAAACAGGTTTCGAAATTT+TGG + chr2_1:68578083-68578102 Msa0220390:intron 30.0%
! GAAACAGGTTTCGAAATTTT+GGG + chr2_1:68578084-68578103 Msa0220390:intron 30.0%
TAAGCTATTCTATAGAGCTA+TGG - chr2_1:68578188-68578207 None:intergenic 30.0%
CAAAATAAGTCAATCCAAAC+GGG - chr2_1:68578232-68578251 None:intergenic 30.0%
GCAAAATAAGTCAATCCAAA+CGG - chr2_1:68578233-68578252 None:intergenic 30.0%
TATCATATAAAGGGTAGGAT+TGG - chr2_1:68578438-68578457 None:intergenic 30.0%
! ATTGTATTGAAGGAGGATTT+TGG - chr2_1:68578804-68578823 None:intergenic 30.0%
TATAAAGAAAAATAAGCCCC+TGG + chr2_1:68578857-68578876 Msa0220390:intron 30.0%
! CTAGTTGTATTTGGAATTTC+GGG + chr2_1:68579114-68579133 Msa0220390:intron 30.0%
! AATTTTCTCAACGTAAATGG+AGG - chr2_1:68579191-68579210 None:intergenic 30.0%
! ACAACAATTGAAGTCACTTT+CGG + chr2_1:68579562-68579581 Msa0220390:intron 30.0%
!! AAGGTTACATATTTGAGTTG+TGG + chr2_1:68579593-68579612 Msa0220390:intron 30.0%
TAAATACAATAGACCCGTTA+TGG + chr2_1:68579629-68579648 Msa0220390:intron 30.0%
AAATACAATAGACCCGTTAT+GGG + chr2_1:68579630-68579649 Msa0220390:intron 30.0%
! GTTATGAACTTTCTAGAAAC+AGG + chr2_1:68579679-68579698 Msa0220390:intron 30.0%
TTATTGCTAATTCTCACTAG+TGG + chr2_1:68579716-68579735 Msa0220390:intron 30.0%
GCTTTCTGTTACATAAAACA+TGG - chr2_1:68579852-68579871 None:intergenic 30.0%
TATGTTTGAATTCATGTGAG+AGG + chr2_1:68580173-68580192 Msa0220390:intron 30.0%
AACCTGTTTAGACTGTTAAA+CGG - chr2_1:68580302-68580321 None:intergenic 30.0%
TTATAGAGGTAAATTACCAC+GGG + chr2_1:68580431-68580450 Msa0220390:intron 30.0%
AATATTAATCTCGGGTATGA+AGG - chr2_1:68580524-68580543 None:intergenic 30.0%
! TTCTAGGGAATATTAATCTC+GGG - chr2_1:68580532-68580551 None:intergenic 30.0%
!! GTTCTAGGGAATATTAATCT+CGG - chr2_1:68580533-68580552 None:intergenic 30.0%
! CAAGTTTAATTTCAGGAAAG+GGG + chr2_1:68580627-68580646 Msa0220390:intron 30.0%
CATGTTAAATTGCTTATGGT+TGG - chr2_1:68580681-68580700 None:intergenic 30.0%
TGCTGAGATTTATAGCATTA+GGG - chr2_1:68580831-68580850 None:intergenic 30.0%
TTGCTGAGATTTATAGCATT+AGG - chr2_1:68580832-68580851 None:intergenic 30.0%
! TCTTTTGATCGAAGCAAATT+GGG - chr2_1:68580863-68580882 None:intergenic 30.0%
ATGACAAAAAGTAGTAACGA+AGG - chr2_1:68580942-68580961 None:intergenic 30.0%
AGGATTCAATTCTAATGCTT+TGG - chr2_1:68581115-68581134 None:intergenic 30.0%
! AAAATGCTCAAGCTTTTCAT+GGG - chr2_1:68581172-68581191 None:intergenic 30.0%
CTTGCTTAGTTATTTGCAAA+AGG - chr2_1:68581368-68581387 None:intergenic 30.0%
! CTTTTGCAAATAACTAAGCA+AGG + chr2_1:68581366-68581385 Msa0220390:intron 30.0%
AAGATGAAGGAAGAAATGAT+TGG + chr2_1:68581669-68581688 Msa0220390:CDS 30.0%
CAGGAAACACAATTAAAACA+TGG - chr2_1:68581773-68581792 None:intergenic 30.0%
CATTTAACAATGAAGAAGAC+AGG - chr2_1:68581792-68581811 None:intergenic 30.0%
! TTGAAGATTGAGTTGTTTGA+TGG - chr2_1:68581880-68581899 None:intergenic 30.0%
AAATCTTGAATTTCAGCTCA+AGG + chr2_1:68581983-68582002 Msa0220390:intron 30.0%
TAAATTTACACCTTGCAAAC+GGG - chr2_1:68582107-68582126 None:intergenic 30.0%
TCACTTTAGACATGTTTAAG+GGG - chr2_1:68582190-68582209 None:intergenic 30.0%
CATCACTTTAGACATGTTTA+AGG - chr2_1:68582192-68582211 None:intergenic 30.0%
! CTTAAACATGTCTAAAGTGA+TGG + chr2_1:68582190-68582209 Msa0220390:intron 30.0%
AATTTGTGACTTTATGTTGG+GGG - chr2_1:68582387-68582406 None:intergenic 30.0%
AGCTATAACACCTTTATGTT+CGG - chr2_1:68582451-68582470 None:intergenic 30.0%
!! ATTATTTTATGGTGATTGCC+TGG + chr2_1:68582690-68582709 Msa0220390:intron 30.0%
! TCTCATTCCAACAGTAATTT+TGG + chr2_1:68582963-68582982 Msa0220390:exon 30.0%
!!! GTTGATATTTTGACAAAGCA+AGG + chr2_1:68583256-68583275 Msa0220390:three_prime_UTR 30.0%
!!! TATTTTGACAAAGCAAGGAT+TGG + chr2_1:68583261-68583280 Msa0220390:three_prime_UTR 30.0%
!! ATTTTGACAAAGCAAGGATT+GGG + chr2_1:68583262-68583281 Msa0220390:three_prime_UTR 30.0%
!!! TTTCTACTTGTTTTTGGTTG+GGG + chr2_1:68583361-68583380 Msa0220390:three_prime_UTR 30.0%
! TTGCTGTGGAAAGATTTGTT+TGG - chr2_1:68577782-68577801 None:intergenic 35.0%
CCTAAAACTTATCAAACCAG+AGG - chr2_1:68578588-68578607 None:intergenic 35.0%
!! CCTCTGGTTTGATAAGTTTT+AGG + chr2_1:68578585-68578604 Msa0220390:intron 35.0%
! TATTGAAGGAGGATTTTGGA+GGG - chr2_1:68578800-68578819 None:intergenic 35.0%
ACAAAAGATCCCCTTAAATG+AGG - chr2_1:68578837-68578856 None:intergenic 35.0%
TTAAGGAGTCATGTCACAAT+TGG + chr2_1:68578995-68579014 Msa0220390:intron 35.0%
TAAGGAGTCATGTCACAATT+GGG + chr2_1:68578996-68579015 Msa0220390:intron 35.0%
! TTGTATTTGGAATTTCGGGT+AGG + chr2_1:68579118-68579137 Msa0220390:intron 35.0%
!! AAGCGTTGAAAAACCAACTT+AGG + chr2_1:68579163-68579182 Msa0220390:intron 35.0%
CTTGAAATCAACCATTGTGA+TGG + chr2_1:68579306-68579325 Msa0220390:intron 35.0%
! GGTTAGAGATGATGCATTTT+TGG + chr2_1:68579346-68579365 Msa0220390:intron 35.0%
! CAACAATTGAAGTCACTTTC+GGG + chr2_1:68579563-68579582 Msa0220390:intron 35.0%
ACGGGTCTATTGTATTTACA+AGG - chr2_1:68579627-68579646 None:intergenic 35.0%
TCATAACCATGTCAAGTTCA+AGG - chr2_1:68579666-68579685 None:intergenic 35.0%
CACTAGTGGAAAAAAAAAGC+TGG + chr2_1:68579730-68579749 Msa0220390:intron 35.0%
CAAATGAAGCAAAGGTAGAA+GGG + chr2_1:68579883-68579902 Msa0220390:CDS 35.0%
! TTTTGTAGATGCAAAGTACG+AGG + chr2_1:68579914-68579933 Msa0220390:CDS 35.0%
! TGTGCTTTCTGAAAATGGTA+TGG + chr2_1:68580030-68580049 Msa0220390:intron 35.0%
GCTGAATGCAAAACTAACTT+AGG - chr2_1:68580219-68580238 None:intergenic 35.0%
! GTTTTGCATTCAGCTCTTTT+AGG + chr2_1:68580225-68580244 Msa0220390:intron 35.0%
TACCGTTTAACAGTCTAAAC+AGG + chr2_1:68580297-68580316 Msa0220390:intron 35.0%
TATAGAGGTAAATTACCACG+GGG + chr2_1:68580432-68580451 Msa0220390:intron 35.0%
! CATGACTGTTTCTTGTTCTA+GGG - chr2_1:68580547-68580566 None:intergenic 35.0%
! TCATGACTGTTTCTTGTTCT+AGG - chr2_1:68580548-68580567 None:intergenic 35.0%
TGCTTATGGTTGGATCATAA+TGG - chr2_1:68580671-68580690 None:intergenic 35.0%
GCTATAAATCTCAGCAAAGT+CGG + chr2_1:68580835-68580854 Msa0220390:intron 35.0%
! GTCTTTTGATCGAAGCAAAT+TGG - chr2_1:68580864-68580883 None:intergenic 35.0%
GAAGGCAAAAATGAAGAATG+AGG - chr2_1:68580924-68580943 None:intergenic 35.0%
TTCCAAATAATGTTGCTCTG+CGG + chr2_1:68580987-68581006 Msa0220390:intron 35.0%
ATCTTTGACACATATACCTC+AGG + chr2_1:68581059-68581078 Msa0220390:intron 35.0%
TCTTTGACACATATACCTCA+GGG + chr2_1:68581060-68581079 Msa0220390:intron 35.0%
TCCTATGTATGTCAAAGCTT+TGG + chr2_1:68581131-68581150 Msa0220390:CDS 35.0%
! ACCAAAGCTTTGACATACAT+AGG - chr2_1:68581135-68581154 None:intergenic 35.0%
! CAAAATGCTCAAGCTTTTCA+TGG - chr2_1:68581173-68581192 None:intergenic 35.0%
!! AAAGCTTGAGCATTTTGAAG+AGG + chr2_1:68581176-68581195 Msa0220390:CDS 35.0%
AAATTTGAACTCACCAGCAA+TGG - chr2_1:68581202-68581221 None:intergenic 35.0%
CTCAGATAAACAATGTCAAG+AGG - chr2_1:68581270-68581289 None:intergenic 35.0%
GGAGCTGTAGTTTCTTAATA+AGG + chr2_1:68581388-68581407 Msa0220390:intron 35.0%
!!! TTATTTTTTGTAGGGGTGAG+TGG + chr2_1:68581747-68581766 Msa0220390:intron 35.0%
! AAACATGTCTAAAGTGATGG+TGG + chr2_1:68582193-68582212 Msa0220390:intron 35.0%
! CAGGATGTAAAAAGCATATG+TGG - chr2_1:68582307-68582326 None:intergenic 35.0%
TTTATAGGAGAGTTTGTGTC+AGG - chr2_1:68582326-68582345 None:intergenic 35.0%
TGACACAAACTCTCCTATAA+AGG + chr2_1:68582325-68582344 Msa0220390:intron 35.0%
GTATCATTCACCTCCTTTAT+AGG - chr2_1:68582341-68582360 None:intergenic 35.0%
GAGGTGAATGATACTATGTT+GGG + chr2_1:68582347-68582366 Msa0220390:intron 35.0%
CTTTGCAAACTTGCAACAAT+GGG - chr2_1:68582425-68582444 None:intergenic 35.0%
TCTTTGCAAACTTGCAACAA+TGG - chr2_1:68582426-68582445 None:intergenic 35.0%
GCTATAACACCTTTATGTTC+GGG - chr2_1:68582450-68582469 None:intergenic 35.0%
!! GAACATAAAGGTGTTATAGC+TGG + chr2_1:68582450-68582469 Msa0220390:intron 35.0%
!! TTCATCTCTTAGAAGTGCTA+TGG + chr2_1:68582540-68582559 Msa0220390:intron 35.0%
! TGATAGTGAAACATGTACTC+AGG - chr2_1:68582810-68582829 None:intergenic 35.0%
TGCAGCAAAACTGAAAGATA+TGG + chr2_1:68582859-68582878 Msa0220390:intron 35.0%
GCAGCAAAACTGAAAGATAT+GGG + chr2_1:68582860-68582879 Msa0220390:intron 35.0%
TGCTCAACCAAAATTACTGT+TGG - chr2_1:68582973-68582992 None:intergenic 35.0%
! TTATTTCCTTCAAAGGGCAT+TGG + chr2_1:68583093-68583112 Msa0220390:three_prime_UTR 35.0%
! TTGATTGATTCATCGTGTGA+AGG + chr2_1:68583116-68583135 Msa0220390:three_prime_UTR 35.0%
! TGATTGATTCATCGTGTGAA+GGG + chr2_1:68583117-68583136 Msa0220390:three_prime_UTR 35.0%
! TTTTGACAAAGCAAGGATTG+GGG + chr2_1:68583263-68583282 Msa0220390:three_prime_UTR 35.0%
! AATACTAGCTTAATCGACAC+TGG - chr2_1:68583292-68583311 None:intergenic 35.0%
!!! TTCTACTTGTTTTTGGTTGG+GGG + chr2_1:68583362-68583381 Msa0220390:three_prime_UTR 35.0%
GATTACTACCATCTTCGAGA+AGG - chr2_1:68577807-68577826 None:intergenic 40.0%
GCAAGAGAATGAGAAGGAAA+AGG + chr2_1:68578000-68578019 Msa0220390:CDS 40.0%
ATAAGTTCTTTGTGCCCGTT+TGG + chr2_1:68578215-68578234 Msa0220390:intron 40.0%
GCGCTTATCATATAAAGGGT+AGG - chr2_1:68578443-68578462 None:intergenic 40.0%
GAAGAGAAGTAGAAATCCTC+TGG + chr2_1:68578569-68578588 Msa0220390:intron 40.0%
! GTATTGAAGGAGGATTTTGG+AGG - chr2_1:68578801-68578820 None:intergenic 40.0%
GAGTTTGGAGGAAAAGAGAT+GGG - chr2_1:68578898-68578917 None:intergenic 40.0%
TCCCTTCAACAAGGTTTATG+CGG - chr2_1:68578954-68578973 None:intergenic 40.0%
TCCTTAAACTCGTCAAACCA+TGG - chr2_1:68578982-68579001 None:intergenic 40.0%
AAGGAGTCATGTCACAATTG+GGG + chr2_1:68578997-68579016 Msa0220390:intron 40.0%
ATAGAACCTCTCTCCAACTT+GGG - chr2_1:68579042-68579061 None:intergenic 40.0%
AATAGAACCTCTCTCCAACT+TGG - chr2_1:68579043-68579062 None:intergenic 40.0%
TCATCTTCTCTCCATCACAA+TGG - chr2_1:68579320-68579339 None:intergenic 40.0%
ATGGAGAGAAGATGAAATGC+TGG + chr2_1:68579325-68579344 Msa0220390:intron 40.0%
CACGCCTATTAATGTTGAAG+AGG + chr2_1:68579528-68579547 Msa0220390:intron 40.0%
GGCTCCTCTTCAACATTAAT+AGG - chr2_1:68579535-68579554 None:intergenic 40.0%
TTAATGTTGAAGAGGAGCCT+TGG + chr2_1:68579536-68579555 Msa0220390:intron 40.0%
ACTTCAATTGTTGTGCACCA+AGG - chr2_1:68579556-68579575 None:intergenic 40.0%
AGGAAGAGTTAGACCCATAA+CGG - chr2_1:68579646-68579665 None:intergenic 40.0%
ACTCTTCCTTGAACTTGACA+TGG + chr2_1:68579657-68579676 Msa0220390:intron 40.0%
GGTTCAAGCAAATGAAGCAA+AGG + chr2_1:68579875-68579894 Msa0220390:CDS 40.0%
GCAAATGAAGCAAAGGTAGA+AGG + chr2_1:68579882-68579901 Msa0220390:CDS 40.0%
!! TTTTCAGAAAGCACACTCCA+CGG - chr2_1:68580025-68580044 None:intergenic 40.0%
! TGGAGTGTGCTTTCTGAAAA+TGG + chr2_1:68580025-68580044 Msa0220390:CDS 40.0%
! CAGATATTTTATCATCCCCG+TGG - chr2_1:68580450-68580469 None:intergenic 40.0%
CATAATGGTCACGTCTCTAA+AGG - chr2_1:68580656-68580675 None:intergenic 40.0%
! GTGTCTTCATATTTTCCCTG+AGG - chr2_1:68581078-68581097 None:intergenic 40.0%
! GTCAAAGCTTTGGTAAGAAG+AGG + chr2_1:68581141-68581160 Msa0220390:CDS 40.0%
AATTGTACCAATGTCCTCTC+AGG + chr2_1:68581238-68581257 Msa0220390:intron 40.0%
! AAATAGAGTACCCCCAAACA+AGG - chr2_1:68581345-68581364 None:intergenic 40.0%
ATTAATTGCTAACCTCGGGA+TGG + chr2_1:68581429-68581448 Msa0220390:intron 40.0%
ATCTGTCAAGTGAAAAGAGC+TGG - chr2_1:68581559-68581578 None:intergenic 40.0%
ATCCCTCAAATGATCAAGCT+GGG + chr2_1:68581601-68581620 Msa0220390:CDS 40.0%
TTCCCAGCTTGATCATTTGA+GGG - chr2_1:68581606-68581625 None:intergenic 40.0%
TTTCCCAGCTTGATCATTTG+AGG - chr2_1:68581607-68581626 None:intergenic 40.0%
GGTAAAACGGGAAAAGATGA+AGG + chr2_1:68581656-68581675 Msa0220390:CDS 40.0%
CTTGAATTTCAGCTCAAGGT+AGG + chr2_1:68581987-68582006 Msa0220390:intron 40.0%
TCAGAGGAGTTATAGACTCT+TGG + chr2_1:68582063-68582082 Msa0220390:intron 40.0%
CAGAGGAGTTATAGACTCTT+GGG + chr2_1:68582064-68582083 Msa0220390:intron 40.0%
ATTGAACTAACCCGTTTGCA+AGG + chr2_1:68582094-68582113 Msa0220390:intron 40.0%
! CCGTTCAACTGATGCATTTT+GGG - chr2_1:68582235-68582254 None:intergenic 40.0%
CCCAAAATGCATCAGTTGAA+CGG + chr2_1:68582232-68582251 Msa0220390:intron 40.0%
! ACCGTTCAACTGATGCATTT+TGG - chr2_1:68582236-68582255 None:intergenic 40.0%
AATGCATCAGTTGAACGGTA+AGG + chr2_1:68582237-68582256 Msa0220390:intron 40.0%
CAAAACTATAGTCTCAGTCG+TGG + chr2_1:68582272-68582291 Msa0220390:intron 40.0%
CACAAACTCTCCTATAAAGG+AGG + chr2_1:68582328-68582347 Msa0220390:intron 40.0%
GGAGGTGAATGATACTATGT+TGG + chr2_1:68582346-68582365 Msa0220390:intron 40.0%
TGCAAAGAACCCGAACATAA+AGG + chr2_1:68582438-68582457 Msa0220390:intron 40.0%
TCCAGACAGAACTAGTTAGT+AGG + chr2_1:68582598-68582617 Msa0220390:intron 40.0%
AGATTCTTCTGAGTTGCACT+CGG + chr2_1:68582624-68582643 Msa0220390:intron 40.0%
AGATATGGGCAACTCTCTAT+TGG + chr2_1:68582874-68582893 Msa0220390:CDS 40.0%
GATATGGGCAACTCTCTATT+GGG + chr2_1:68582875-68582894 Msa0220390:CDS 40.0%
ACAGAATAGGAACCAGTGTT+TGG - chr2_1:68582944-68582963 None:intergenic 40.0%
CTGTTGGAATGAGACAGAAT+AGG - chr2_1:68582957-68582976 None:intergenic 40.0%
AATCAACCAATGCCCTTTGA+AGG - chr2_1:68583102-68583121 None:intergenic 40.0%
! GATTGATTCATCGTGTGAAG+GGG + chr2_1:68583118-68583137 Msa0220390:three_prime_UTR 40.0%
! TCTTCGAGAAGGTTTTGCTG+TGG - chr2_1:68577796-68577815 None:intergenic 45.0%
CAGCAAAACCTTCTCGAAGA+TGG + chr2_1:68577796-68577815 Msa0220390:exon 45.0%
CATTCTCTTGCTCTGTCTGT+TGG - chr2_1:68577991-68578010 None:intergenic 45.0%
GACAGAGCAAGAGAATGAGA+AGG + chr2_1:68577994-68578013 Msa0220390:CDS 45.0%
!! GTCAATGGAAGCATCATCAG+AGG - chr2_1:68578053-68578072 None:intergenic 45.0%
! TGATGATGCTTCCATTGACG+AGG + chr2_1:68578054-68578073 Msa0220390:CDS 45.0%
TTTCAGTTCCTCCTCGTCAA+TGG - chr2_1:68578068-68578087 None:intergenic 45.0%
AGAGTGTAATAAGGCCCGTT+AGG - chr2_1:68578497-68578516 None:intergenic 45.0%
TTAGGCTCAGTTTGCGAGTT+TGG + chr2_1:68578603-68578622 Msa0220390:intron 45.0%
GAGATGGGATGGATGACTTT+GGG - chr2_1:68578883-68578902 None:intergenic 45.0%
AGAGATGGGATGGATGACTT+TGG - chr2_1:68578884-68578903 None:intergenic 45.0%
TTGGAGGAAAAGAGATGGGA+TGG - chr2_1:68578894-68578913 None:intergenic 45.0%
CGAGTTTGGAGGAAAAGAGA+TGG - chr2_1:68578899-68578918 None:intergenic 45.0%
! TAAGGCTCTGATTGCGAGTT+TGG - chr2_1:68578913-68578932 None:intergenic 45.0%
AACTCGCAATCAGAGCCTTA+AGG + chr2_1:68578913-68578932 Msa0220390:intron 45.0%
GGAAAACCTCTTGCACCTTA+AGG - chr2_1:68578931-68578950 None:intergenic 45.0%
CCTTCAACAAGGTTTATGCG+GGG - chr2_1:68578952-68578971 None:intergenic 45.0%
CCCTTCAACAAGGTTTATGC+GGG - chr2_1:68578953-68578972 None:intergenic 45.0%
CCCGCATAAACCTTGTTGAA+GGG + chr2_1:68578950-68578969 Msa0220390:intron 45.0%
GCATAAACCTTGTTGAAGGG+AGG + chr2_1:68578953-68578972 Msa0220390:intron 45.0%
GCCATGGTTTGACGAGTTTA+AGG + chr2_1:68578978-68578997 Msa0220390:intron 45.0%
AGTCATGTCACAATTGGGGA+TGG + chr2_1:68579001-68579020 Msa0220390:intron 45.0%
GTCATGTCACAATTGGGGAT+GGG + chr2_1:68579002-68579021 Msa0220390:intron 45.0%
TCATGTCACAATTGGGGATG+GGG + chr2_1:68579003-68579022 Msa0220390:intron 45.0%
CTCTCTCCAACTTGGGTTAT+TGG - chr2_1:68579035-68579054 None:intergenic 45.0%
! CAATAACCCAAGTTGGAGAG+AGG + chr2_1:68579033-68579052 Msa0220390:intron 45.0%
GTAAATGGAGGAGCCTAAGT+TGG - chr2_1:68579179-68579198 None:intergenic 45.0%
GGCGTGCACACAGAATATTA+AGG - chr2_1:68579514-68579533 None:intergenic 45.0%
GGAAGAGTTAGACCCATAAC+GGG - chr2_1:68579645-68579664 None:intergenic 45.0%
TGTAGATGCAAAGTACGAGG+AGG + chr2_1:68579917-68579936 Msa0220390:CDS 45.0%
TCAATATGCCATGCAAACCG+TGG + chr2_1:68580005-68580024 Msa0220390:CDS 45.0%
CAAGAGCTAGATAGACCACT+AGG - chr2_1:68580146-68580165 None:intergenic 45.0%
TGCCGCAGAGCAACATTATT+TGG - chr2_1:68580992-68581011 None:intergenic 45.0%
! AGCTTTGGTAAGAAGAGGAG+AGG + chr2_1:68581146-68581165 Msa0220390:CDS 45.0%
!! CATTTTGAAGAGGCCATTGC+TGG + chr2_1:68581186-68581205 Msa0220390:CDS 45.0%
GTGAAAACCTGAGAGGACAT+TGG - chr2_1:68581248-68581267 None:intergenic 45.0%
TCAAGAGGTGAAAACCTGAG+AGG - chr2_1:68581255-68581274 None:intergenic 45.0%
! CTTGACACCCTTCCTTGTTT+GGG + chr2_1:68581330-68581349 Msa0220390:intron 45.0%
! TTGACACCCTTCCTTGTTTG+GGG + chr2_1:68581331-68581350 Msa0220390:intron 45.0%
GATCCCTCAAATGATCAAGC+TGG + chr2_1:68581600-68581619 Msa0220390:CDS 45.0%
AAGCTGGGAAAGCTATTCGT+CGG + chr2_1:68581616-68581635 Msa0220390:CDS 45.0%
ACCACATCCTCTATGACAAG+TGG + chr2_1:68581922-68581941 Msa0220390:intron 45.0%
CCACATCCTCTATGACAAGT+GGG + chr2_1:68581923-68581942 Msa0220390:intron 45.0%
ATCCTCTATGACAAGTGGGT+TGG + chr2_1:68581927-68581946 Msa0220390:intron 45.0%
TTCCAACCCACTTGTCATAG+AGG - chr2_1:68581932-68581951 None:intergenic 45.0%
GTGTGGCTGTCAAACTATGT+AGG + chr2_1:68582028-68582047 Msa0220390:intron 45.0%
TGACTTTATGTTGGGGGCTA+TGG - chr2_1:68582381-68582400 None:intergenic 45.0%
GCAAACTTGCAACAATGGGT+CGG - chr2_1:68582421-68582440 None:intergenic 45.0%
!! GCCTACTAACTAGTTCTGTC+TGG - chr2_1:68582602-68582621 None:intergenic 45.0%
GATTCTTCTGAGTTGCACTC+GGG + chr2_1:68582625-68582644 Msa0220390:intron 45.0%
TGTCTACACTCATCCCAAAG+CGG - chr2_1:68582901-68582920 None:intergenic 45.0%
AGGAACCAGTGTTTGGATCT+TGG - chr2_1:68582937-68582956 None:intergenic 45.0%
! GAGCAAAGTCATGAAAGCGT+TGG + chr2_1:68582988-68583007 Msa0220390:three_prime_UTR 45.0%
CGTTGTTCATGCAAGTCACT+AGG + chr2_1:68583022-68583041 Msa0220390:three_prime_UTR 45.0%
!!! TTAATAATTTAATTTTATAG+AGG + chr2_1:68580417-68580436 Msa0220390:intron 5.0%
!! TATTAAAAGAAAAAATAAAA+GGG - chr2_1:68581467-68581486 None:intergenic 5.0%
!! ATATTAAAAGAAAAAATAAA+AGG - chr2_1:68581468-68581487 None:intergenic 5.0%
!!! TTTTATTTTTTCTTTTAATA+TGG + chr2_1:68581467-68581486 Msa0220390:intron 5.0%
TCAACCAACGACGTTTCCGA+CGG + chr2_1:68577860-68577879 Msa0220390:CDS 50.0%
CTCATGTTTGATTGCACCGC+CGG - chr2_1:68577939-68577958 None:intergenic 50.0%
TCTCTTGCTCTGTCTGTTGG+TGG - chr2_1:68577988-68578007 None:intergenic 50.0%
TGATGCTTCCATTGACGAGG+AGG + chr2_1:68578057-68578076 Msa0220390:CDS 50.0%
TGACGAGGAGGAACTGAAAC+AGG + chr2_1:68578069-68578088 Msa0220390:CDS 50.0%
GCTCAGTTTGCGAGTTTGGA+GGG + chr2_1:68578607-68578626 Msa0220390:intron 50.0%
AGTTTGCGAGTTTGGAGGGA+AGG + chr2_1:68578611-68578630 Msa0220390:intron 50.0%
GTTTGCGAGTTTGGAGGGAA+GGG + chr2_1:68578612-68578631 Msa0220390:intron 50.0%
TTTGCGAGTTTGGAGGGAAG+GGG + chr2_1:68578613-68578632 Msa0220390:intron 50.0%
TCAGAGCCTTAAGGTGCAAG+AGG + chr2_1:68578922-68578941 Msa0220390:intron 50.0%
CCCCGCATAAACCTTGTTGA+AGG + chr2_1:68578949-68578968 Msa0220390:intron 50.0%
ATGGCTACCTCCCTTCAACA+AGG - chr2_1:68578963-68578982 None:intergenic 50.0%
TTGTTGAAGGGAGGTAGCCA+TGG + chr2_1:68578962-68578981 Msa0220390:intron 50.0%
CATGTCACAATTGGGGATGG+GGG + chr2_1:68579004-68579023 Msa0220390:intron 50.0%
ATGTCACAATTGGGGATGGG+GGG + chr2_1:68579005-68579024 Msa0220390:intron 50.0%
GGCTCTCCAATAACCCAAGT+TGG + chr2_1:68579026-68579045 Msa0220390:intron 50.0%
! GTCACTTTCGGGTGACTAGA+AGG + chr2_1:68579574-68579593 Msa0220390:intron 50.0%
GAGCGTATTTCCACAGACGA+AGG - chr2_1:68579987-68580006 None:intergenic 50.0%
CTAGATAGACCACTAGGCAG+AGG - chr2_1:68580140-68580159 None:intergenic 50.0%
TGAGCAGCAGCAGCAGAAAA+AGG + chr2_1:68580565-68580584 Msa0220390:intron 50.0%
GCTTGACACCCTTCCTTGTT+TGG + chr2_1:68581329-68581348 Msa0220390:intron 50.0%
! TGACACCCTTCCTTGTTTGG+GGG + chr2_1:68581332-68581351 Msa0220390:intron 50.0%
GAGTACCCCCAAACAAGGAA+GGG - chr2_1:68581340-68581359 None:intergenic 50.0%
! AGAGTACCCCCAAACAAGGA+AGG - chr2_1:68581341-68581360 None:intergenic 50.0%
TAACGGCAATAACCATCCCG+AGG - chr2_1:68581444-68581463 None:intergenic 50.0%
! TTCCCGTTTTACCGCAGCAA+GGG - chr2_1:68581649-68581668 None:intergenic 50.0%
! TTTCCCGTTTTACCGCAGCA+AGG - chr2_1:68581650-68581669 None:intergenic 50.0%
CCCACTTGTCATAGAGGATG+TGG - chr2_1:68581926-68581945 None:intergenic 50.0%
GAGATGTGCTGTCTACAGTG+TGG + chr2_1:68582011-68582030 Msa0220390:intron 50.0%
AACTCTCTATTGGGCCGCTT+TGG + chr2_1:68582884-68582903 Msa0220390:CDS 50.0%
! ACTCTCTATTGGGCCGCTTT+GGG + chr2_1:68582885-68582904 Msa0220390:CDS 50.0%
GCAGTCCAAGATCCAAACAC+TGG + chr2_1:68582929-68582948 Msa0220390:CDS 50.0%
TTGGTTGAAGCTGCGTCGGA+GGG - chr2_1:68577848-68577867 None:intergenic 55.0%
! GTCGTTGGTTGAAGCTGCGT+CGG - chr2_1:68577852-68577871 None:intergenic 55.0%
AAAGCCGTCGGAAACGTCGT+TGG - chr2_1:68577867-68577886 None:intergenic 55.0%
ACTGGCGGTTTCAAAGCCGT+CGG - chr2_1:68577879-68577898 None:intergenic 55.0%
CGGCGGTGCAATCAAACATG+AGG + chr2_1:68577937-68577956 Msa0220390:CDS 55.0%
GGCTCAGTTTGCGAGTTTGG+AGG + chr2_1:68578606-68578625 Msa0220390:intron 55.0%
GATGGATGACTTTGGGCCAG+GGG - chr2_1:68578876-68578895 None:intergenic 55.0%
GGATGGATGACTTTGGGCCA+GGG - chr2_1:68578877-68578896 None:intergenic 55.0%
! GGCTCTGATTGCGAGTTTGG+AGG - chr2_1:68578910-68578929 None:intergenic 55.0%
! TCCACAGACGAAGGCATGTC+TGG - chr2_1:68579978-68579997 None:intergenic 55.0%
AGCACACTCCACGGTTTGCA+TGG - chr2_1:68580016-68580035 None:intergenic 55.0%
AGCCCCTTGCTGCGGTAAAA+CGG + chr2_1:68581643-68581662 Msa0220390:CDS 55.0%
! TCCCGTTTTACCGCAGCAAG+GGG - chr2_1:68581648-68581667 None:intergenic 55.0%
GTTGGTTGAAGCTGCGTCGG+AGG - chr2_1:68577849-68577868 None:intergenic 60.0%
ACCGCCAGTGACACCGATCT+CGG + chr2_1:68577890-68577909 Msa0220390:CDS 60.0%
CGAGTTTGGAGGGAAGGGGA+GGG + chr2_1:68578617-68578636 Msa0220390:intron 60.0%
GAGTTTGGAGGGAAGGGGAG+GGG + chr2_1:68578618-68578637 Msa0220390:intron 60.0%
GGGATGGATGACTTTGGGCC+AGG - chr2_1:68578878-68578897 None:intergenic 60.0%
GCCAGACATGCCTTCGTCTG+TGG + chr2_1:68579974-68579993 Msa0220390:CDS 60.0%
TCGGTTAGAGCCCCTTGCTG+CGG + chr2_1:68581635-68581654 Msa0220390:CDS 60.0%
GCCCCTTGCTGCGGTAAAAC+GGG + chr2_1:68581644-68581663 Msa0220390:CDS 60.0%
!! GCCGAGATCGGTGTCACTGG+CGG - chr2_1:68577894-68577913 None:intergenic 65.0%
!! GCTGCCGAGATCGGTGTCAC+TGG - chr2_1:68577897-68577916 None:intergenic 65.0%
GTCGACGTCGCTGCCGAGAT+CGG - chr2_1:68577906-68577925 None:intergenic 65.0%
GACGTCGACGCCAATGACGC+CGG + chr2_1:68577917-68577936 Msa0220390:CDS 65.0%
GATTGCACCGCCGGCGTCAT+TGG - chr2_1:68577930-68577949 None:intergenic 65.0%
GCGAGTTTGGAGGGAAGGGG+AGG + chr2_1:68578616-68578635 Msa0220390:intron 65.0%
TTGGAGGGAAGGGGAGGGGA+AGG + chr2_1:68578622-68578641 Msa0220390:intron 65.0%
TGGAGGGAAGGGGAGGGGAA+GGG + chr2_1:68578623-68578642 Msa0220390:intron 65.0%
AGGGGAGGGGAAGGGAGTAG+AGG + chr2_1:68578631-68578650 Msa0220390:intron 65.0%
GGGGAGGGGAAGGGAGTAGA+GGG + chr2_1:68578632-68578651 Msa0220390:intron 65.0%
GCTCGACTGCCTCTGCCTAG+TGG + chr2_1:68580128-68580147 Msa0220390:intron 65.0%
GTCGACGCCAATGACGCCGG+CGG + chr2_1:68577920-68577939 Msa0220390:CDS 70.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 68577715 68583390 68577715 ID=Msa0220390;Name=Msa0220390
chr2_1 mRNA 68577715 68583390 68577715 ID=Msa0220390-mRNA-1;Parent=Msa0220390;Name=Msa0220390-mRNA-1;_AED=0.07;_eAED=0.07;_QI=100|1|1|1|1|1|5|411|270
chr2_1 exon 68577715 68578090 68577715 ID=Msa0220390-mRNA-1:exon:19387;Parent=Msa0220390-mRNA-1
chr2_1 exon 68579867 68580046 68579867 ID=Msa0220390-mRNA-1:exon:19388;Parent=Msa0220390-mRNA-1
chr2_1 exon 68581081 68581207 68581081 ID=Msa0220390-mRNA-1:exon:19389;Parent=Msa0220390-mRNA-1
chr2_1 exon 68581577 68581690 68581577 ID=Msa0220390-mRNA-1:exon:19390;Parent=Msa0220390-mRNA-1
chr2_1 exon 68582864 68583390 68582864 ID=Msa0220390-mRNA-1:exon:19391;Parent=Msa0220390-mRNA-1
chr2_1 five_prime_UTR 68577715 68577814 68577715 ID=Msa0220390-mRNA-1:five_prime_utr;Parent=Msa0220390-mRNA-1
chr2_1 CDS 68577815 68578090 68577815 ID=Msa0220390-mRNA-1:cds;Parent=Msa0220390-mRNA-1
chr2_1 CDS 68579867 68580046 68579867 ID=Msa0220390-mRNA-1:cds;Parent=Msa0220390-mRNA-1
chr2_1 CDS 68581081 68581207 68581081 ID=Msa0220390-mRNA-1:cds;Parent=Msa0220390-mRNA-1
chr2_1 CDS 68581577 68581690 68581577 ID=Msa0220390-mRNA-1:cds;Parent=Msa0220390-mRNA-1
chr2_1 CDS 68582864 68582979 68582864 ID=Msa0220390-mRNA-1:cds;Parent=Msa0220390-mRNA-1
chr2_1 three_prime_UTR 68582980 68583390 68582980 ID=Msa0220390-mRNA-1:three_prime_utr;Parent=Msa0220390-mRNA-1
Gene Sequence

>Msa0220390

ATGGTAGTAATCGAAGATCGAAACGCGATTCCCTCCGACGCAGCTTCAACCAACGACGTTTCCGACGGCTTTGAAACCGCCAGTGACACCGATCTCGGCAGCGACGTCGACGCCAATGACGCCGGCGGTGCAATCAAACATGAGGAAGAAGATCATCGTGATCAGCAAAGCCACCAACAGACAGAGCAAGAGAATGAGAAGGAAAAGGAGCAGAGTGATTCTCAGAGAATCATTTCCTCTGATGATGCTTCCATTGACGAGGAGGAACTGAAACAGAAAGCATTGGTTCAAGCAAATGAAGCAAAGGTAGAAGGGAACAAACTTTTTGTAGATGCAAAGTACGAGGAGGCATTAACACAATATGAACTTGCTTTAGAAGTTGCGCCAGACATGCCTTCGTCTGTGGAAATACGCTCAATATGCCATGCAAACCGTGGAGTGTGCTTTCTGAAAATGGGAAAATATGAAGACACAGTTAAAGAATGCACCAAAGCATTAGAATTGAATCCTATGTATGTCAAAGCTTTGGTAAGAAGAGGAGAGGCCCATGAAAAGCTTGAGCATTTTGAAGAGGCCATTGCTGATATGAAAAAGATCTTAGAAATTGATCCCTCAAATGATCAAGCTGGGAAAGCTATTCGTCGGTTAGAGCCCCTTGCTGCGGTAAAACGGGAAAAGATGAAGGAAGAAATGATTGCAAAACTGAAAGATATGGGCAACTCTCTATTGGGCCGCTTTGGGATGAGTGTAGACAACTTTAAAGCAGTCCAAGATCCAAACACTGGTTCCTATTCTGTCTCATTCCAACAGTAA
Protein sequence

>Msa0220390

MVVIEDRNAIPSDAASTNDVSDGFETASDTDLGSDVDANDAGGAIKHEEEDHRDQQSHQQTEQENEKEKEQSDSQRIISSDDASIDEEELKQKALVQANEAKVEGNKLFVDAKYEEALTQYELALEVAPDMPSSVEIRSICHANRGVCFLKMGKYEDTVKECTKALELNPMYVKALVRRGEAHEKLEHFEEAIADMKKILEIDPSNDQAGKAIRRLEPLAAVKREKMKEEMIAKLKDMGNSLLGRFGMSVDNFKAVQDPNTGSYSVSFQQ*