AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0385490


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0385490 MtrunA17_Chr2g0319571 97.973 296 5 1 1 295 1 296 0.0 582
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0385490 AT4G27120.2 64.262 305 92 5 1 295 1 298 5.79e-97 288
Msa0385490 AT4G27120.1 64.262 305 92 5 1 295 1 298 5.79e-97 288
Msa0385490 AT4G27120.3 75.000 228 47 4 76 295 4 229 6.11e-86 257

Find 78 sgRNAs with CRISPR-Local

Find 403 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTTATATATTCAACAAAAT+TGG 0.202421 3_1:+89021092 None:intergenic
GGTTTGATTTACTAGCTAAA+TGG 0.210956 3_1:+89018462 None:intergenic
TTCTGCAGCAAGATCTTCTA+AGG 0.265042 3_1:+89020868 None:intergenic
ATTGTTCTTCTTCGGTTTGC+AGG 0.293947 3_1:+89024139 None:intergenic
AATAAACCTTGTTGCGTTGC+AGG 0.302830 3_1:+89023764 None:intergenic
TCCTCAGCATAATGAGTCTT+TGG 0.336486 3_1:+89018422 None:intergenic
TACTTCCATCTGTCTGAAAC+TGG 0.338899 3_1:+89018086 None:intergenic
GGCCAAAGCATCAAAGAAAA+AGG 0.344496 3_1:-89022909 Msa0385490:CDS
CGGTTTCTATTGTTCTTCTT+CGG 0.362300 3_1:+89024131 None:intergenic
TTCCTCCGAAGAATCTCTTC+AGG 0.362853 3_1:-89023967 Msa0385490:intron
CTTTGACTGCCGAGCTTCTT+CGG 0.373097 3_1:+89021400 None:intergenic
GGATGAAGAGCGTGAGGCGC+AGG 0.375726 3_1:-89021345 Msa0385490:CDS
TTTCGGGTGTCATGGATGAT+AGG 0.388749 3_1:-89018565 Msa0385490:CDS
GTTTGATTTACTAGCTAAAT+GGG 0.400098 3_1:+89018463 None:intergenic
TATCAATCGCATCACATCTC+TGG 0.405277 3_1:-89019037 Msa0385490:CDS
AATCAAAATATCTATCTTTG+CGG 0.413487 3_1:+89024111 None:intergenic
TTGGCTCTAAATCAATGAAC+TGG 0.430161 3_1:+89018441 None:intergenic
AGAGGAAGCCAAAGCTCAAA+AGG 0.449793 3_1:-89021226 Msa0385490:CDS
CGTCGGAGAACGGTTGCGTC+TGG 0.451265 3_1:-89023809 Msa0385490:CDS
CACTAATTCCACTCTACCTA+TGG 0.452049 3_1:-89024025 Msa0385490:CDS
AATCTTGTCTTGCTATGAAA+AGG 0.456615 3_1:+89018013 None:intergenic
GTAGCGGTGGCACGTGCAGC+AGG 0.458752 3_1:+89023842 None:intergenic
AGAAATAGAATGCACTGATC+TGG 0.464960 3_1:-89018317 Msa0385490:three_prime_UTR
AGGAACTCAAAAGGCAAGAG+AGG 0.466995 3_1:-89022889 Msa0385490:CDS
GCAAACCTGAAGAGATTCTT+CGG 0.475006 3_1:+89023962 None:intergenic
TTCAGAAATGCGGAGGTTGA+AGG 0.477745 3_1:-89021366 Msa0385490:CDS
CCGCTACTCGCCGCATGCGT+CGG 0.483491 3_1:-89023826 Msa0385490:CDS
TCGCCGCATGCGTCGGAGAA+CGG 0.485918 3_1:-89023819 Msa0385490:CDS
CGTGCAGCAGGTTCTCTGAC+TGG 0.487359 3_1:+89023854 None:intergenic
AGGTCGGCTTTCGGGTGTCA+TGG 0.491989 3_1:-89018573 Msa0385490:CDS
AGCTCAAAAGGCTAGGGAAG+AGG 0.494792 3_1:-89021214 Msa0385490:CDS
TGAAACCAGTTTCAGACAGA+TGG 0.501893 3_1:-89018091 Msa0385490:three_prime_UTR
AAATTAATTGAGAAATTACA+TGG 0.504193 3_1:+89018113 None:intergenic
ACCTCCGCATTTCTGAATAA+CGG 0.508197 3_1:+89021372 None:intergenic
TTCGGGTGTCATGGATGATA+GGG 0.512596 3_1:-89018564 Msa0385490:CDS
CATCACATCTCTGGAAAGCA+TGG 0.517076 3_1:-89019028 Msa0385490:CDS
AATCGCGATGGCGTTTCCAT+AGG 0.517904 3_1:+89024009 None:intergenic
AAGCCAAAGCTCAAAAGGCT+AGG 0.524157 3_1:-89021221 Msa0385490:CDS
AAAATTCATTTACATCTCAC+AGG 0.525131 3_1:-89018540 Msa0385490:CDS
ATGAAATTGGAGTAATGCTA+AGG 0.533723 3_1:+89018261 None:intergenic
AGGTACACTTGAAGAGGAGC+AGG 0.538791 3_1:-89021136 Msa0385490:CDS
TGAGGCGCAGGAGCGTAAGT+TGG 0.547553 3_1:-89021333 Msa0385490:intron
TTTGAAAGGCCGAAGAAGCT+CGG 0.559088 3_1:-89021409 Msa0385490:intron
AGCCAAAGCTCAAAAGGCTA+GGG 0.560451 3_1:-89021220 Msa0385490:CDS
CCGACGCATGCGGCGAGTAG+CGG 0.568591 3_1:+89023826 None:intergenic
TTTCTTTACATCATCAACGA+TGG 0.575763 3_1:-89024090 Msa0385490:exon
GCTCCGCCTGCAACGCAACA+AGG 0.578148 3_1:-89023770 Msa0385490:intron
TTCGGAGGAAGATGAAGATG+AGG 0.579662 3_1:+89023980 None:intergenic
TTATATTAAGCGACAAGGGA+GGG 0.582545 3_1:-89018495 Msa0385490:CDS
ACGCATGCGGCGAGTAGCGG+TGG 0.584210 3_1:+89023829 None:intergenic
AGAGAGGGAAGCTCGACGGC+AGG 0.585418 3_1:-89022873 Msa0385490:intron
GGCAAGAGAGGGAAGCTCGA+CGG 0.594227 3_1:-89022877 Msa0385490:CDS
TGATGAAGGTACACTTGAAG+AGG 0.595506 3_1:-89021142 Msa0385490:CDS
GGAACTCAAAAGGCAAGAGA+GGG 0.598128 3_1:-89022888 Msa0385490:CDS
TGCTGAGGACATTAGTAACA+TGG 0.604243 3_1:-89018408 Msa0385490:CDS
CAACCGTTCTCCGACGCATG+CGG 0.605145 3_1:+89023816 None:intergenic
TGGCGTTTCCATAGGTAGAG+TGG 0.606502 3_1:+89024017 None:intergenic
ACCGTTATTCAGAAATGCGG+AGG 0.609223 3_1:-89021373 Msa0385490:CDS
AGAATTTAAATTGCGCACAC+AGG 0.611949 3_1:-89020849 Msa0385490:intron
TTAGAGTTTGACAAGTGGAA+AGG 0.613934 3_1:-89021180 Msa0385490:CDS
ATTATATTAAGCGACAAGGG+AGG 0.616619 3_1:-89018496 Msa0385490:CDS
GAAAGTGACAATGAAGCTGC+TGG 0.617304 3_1:-89022944 Msa0385490:CDS
ATCACATCTCTGGAAAGCAT+GGG 0.618886 3_1:-89019027 Msa0385490:intron
TCTGCAGCAAGATCTTCTAA+GGG 0.619289 3_1:+89020869 None:intergenic
AAACCTTGTTGCGTTGCAGG+CGG 0.623759 3_1:+89023767 None:intergenic
CTGCGTTAGAGTTTGACAAG+TGG 0.625306 3_1:-89021185 Msa0385490:CDS
GAGATAACTGTCAACTGACA+TGG 0.625384 3_1:-89018383 Msa0385490:exon
CTGATTATATTAAGCGACAA+GGG 0.630907 3_1:-89018499 Msa0385490:CDS
CTGCAATGAGAAGTGTAGAG+AGG 0.643472 3_1:+89024048 None:intergenic
TCGGGTGTCATGGATGATAG+GGG 0.647827 3_1:-89018563 Msa0385490:CDS
GTTGAAGGATGAAGAGCGTG+AGG 0.648299 3_1:-89021351 Msa0385490:CDS
ATGAGGATTGAGAATCGCGA+TGG 0.648606 3_1:+89023997 None:intergenic
GCTGATTATATTAAGCGACA+AGG 0.652115 3_1:-89018500 Msa0385490:CDS
GCCAAAGACTCATTATGCTG+AGG 0.657399 3_1:-89018423 Msa0385490:CDS
AGCTGCTGGTGATGAGCATG+AGG 0.671214 3_1:-89022930 Msa0385490:CDS
AAGACCGTTATTCAGAAATG+CGG 0.686615 3_1:-89021376 Msa0385490:CDS
AACCTGAAGAGATTCTTCGG+AGG 0.717248 3_1:+89023965 None:intergenic
TGAGGACATTAGTAACATGG+AGG 0.752094 3_1:-89018405 Msa0385490:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GAAATAATATTTTAGATAAA+GGG - chr3_1:89019820-89019839 Msa0385490:intron 10.0%
!!! AAATAATATTTTAGATAAAG+GGG - chr3_1:89019821-89019840 Msa0385490:intron 10.0%
!! ATAAATATTCTATAAACTTA+AGG + chr3_1:89022600-89022619 None:intergenic 10.0%
!! TTATAGAATATTTATATACA+AGG - chr3_1:89022605-89022624 Msa0385490:intron 10.0%
!!! AGTAATATATTTTTCATTTT+CGG - chr3_1:89023075-89023094 Msa0385490:intron 10.0%
!!! GATTTAATTTTATTTGTGTT+TGG - chr3_1:89018452-89018471 Msa0385490:CDS 15.0%
!! TAATTGAATTAATTCTTGTT+TGG - chr3_1:89018516-89018535 Msa0385490:CDS 15.0%
!!! AGACTTTTTTGAAAAATAAA+AGG - chr3_1:89019798-89019817 Msa0385490:intron 15.0%
!!! GGAAATAATATTTTAGATAA+AGG - chr3_1:89019819-89019838 Msa0385490:intron 15.0%
!!! AATAATATTTTAGATAAAGG+GGG - chr3_1:89019822-89019841 Msa0385490:intron 15.0%
!! CTTTATATATTCAACAAAAT+TGG + chr3_1:89021084-89021103 None:intergenic 15.0%
!!! CAATTTTGTTGAATATATAA+AGG - chr3_1:89021082-89021101 Msa0385490:intron 15.0%
!! AATAGAATATAAAAAAGAAG+AGG + chr3_1:89021404-89021423 None:intergenic 15.0%
!! ATATAAATCATTAAACATAC+TGG + chr3_1:89021513-89021532 None:intergenic 15.0%
!!! TTTTATCTTACATTTTGTAA+TGG - chr3_1:89021943-89021962 Msa0385490:intron 15.0%
!!! GTAATATATTTTTCATTTTC+GGG - chr3_1:89023076-89023095 Msa0385490:intron 15.0%
!!! TAATATATTTTTCATTTTCG+GGG - chr3_1:89023077-89023096 Msa0385490:intron 15.0%
!!! TATATATTTCTTTTGATAGA+TGG + chr3_1:89023206-89023225 None:intergenic 15.0%
!! AAGAAATATTTGACATAATT+GGG - chr3_1:89023359-89023378 Msa0385490:intron 15.0%
!!! AATGATTTATTTATTTTGTC+AGG - chr3_1:89023580-89023599 Msa0385490:intron 15.0%
!!! ATACAGTAAATATATTTTTG+CGG + chr3_1:89023941-89023960 None:intergenic 15.0%
!! AAATTAATTGAGAAATTACA+TGG + chr3_1:89024063-89024082 None:intergenic 15.0%
!! AATCAAAATATCTATCTTTG+CGG + chr3_1:89018065-89018084 None:intergenic 20.0%
!!! GTTGTTTTTATAAGTTATCA+TGG - chr3_1:89018648-89018667 Msa0385490:intron 20.0%
!! ATAAAATTCCATTAATCAGA+TGG + chr3_1:89018818-89018837 None:intergenic 20.0%
!! TTAAATTTGACTAACCAAAA+TGG - chr3_1:89019466-89019485 Msa0385490:intron 20.0%
!!! ATAATATTTTAGATAAAGGG+GGG - chr3_1:89019823-89019842 Msa0385490:intron 20.0%
!! AGATAATACAAAGGATAATT+TGG - chr3_1:89019875-89019894 Msa0385490:intron 20.0%
!!! AATAGTTTAATTTTGTTCTC+AGG - chr3_1:89020232-89020251 Msa0385490:intron 20.0%
!! TCATCACTCATTATTAAAAA+TGG - chr3_1:89020255-89020274 Msa0385490:intron 20.0%
!! CATCACTCATTATTAAAAAT+GGG - chr3_1:89020256-89020275 Msa0385490:intron 20.0%
!! ATCAAATAACAAGTAAGAAA+AGG + chr3_1:89020416-89020435 None:intergenic 20.0%
!! AAAAGTTTATTTATGTCCAT+AGG - chr3_1:89021166-89021185 Msa0385490:CDS 20.0%
!! AAAGTTTATTTATGTCCATA+GGG - chr3_1:89021167-89021186 Msa0385490:CDS 20.0%
!! CAAACAATATAAAAAAGAAG+AGG + chr3_1:89021437-89021456 None:intergenic 20.0%
!! AAAAGAAGTTAGATATTAGT+GGG + chr3_1:89021816-89021835 None:intergenic 20.0%
!!! TTTTCCCAAACATTATTAAT+TGG - chr3_1:89021832-89021851 Msa0385490:intron 20.0%
!! ACTTCCAATTAATAATGTTT+GGG + chr3_1:89021839-89021858 None:intergenic 20.0%
!! AACTTCCAATTAATAATGTT+TGG + chr3_1:89021840-89021859 None:intergenic 20.0%
!! ATAATCAATTGTTTAATTCG+TGG - chr3_1:89022071-89022090 Msa0385490:intron 20.0%
!! TAATCAATTGTTTAATTCGT+GGG - chr3_1:89022072-89022091 Msa0385490:intron 20.0%
!! AGAAACAATATCTTAAAGTT+TGG - chr3_1:89022633-89022652 Msa0385490:intron 20.0%
!! GAAACAATATCTTAAAGTTT+GGG - chr3_1:89022634-89022653 Msa0385490:intron 20.0%
!!! TCGACTACTTTATAATTTTA+TGG - chr3_1:89022718-89022737 Msa0385490:intron 20.0%
!! TTACTTAGAAACATTAGAAA+AGG + chr3_1:89022990-89023009 None:intergenic 20.0%
!!! TTTCTAATGTTTCTAAGTAA+TGG - chr3_1:89022990-89023009 Msa0385490:intron 20.0%
!! TAGATGGTAATTTAAAAGAA+AGG + chr3_1:89023190-89023209 None:intergenic 20.0%
!! TATGATGAAAAATAAACCAA+GGG + chr3_1:89023235-89023254 None:intergenic 20.0%
!! TGATTGTATATGAATTCAAA+AGG + chr3_1:89023286-89023305 None:intergenic 20.0%
!! GAAGAAATATTTGACATAAT+TGG - chr3_1:89023358-89023377 Msa0385490:intron 20.0%
!!! ATTTATTTATTTTGTCAGGT+CGG - chr3_1:89023584-89023603 Msa0385490:intron 20.0%
!!! TACAGTAAATATATTTTTGC+GGG + chr3_1:89023940-89023959 None:intergenic 20.0%
!!! AGAAAGTTATTCCATATTTT+TGG - chr3_1:89023998-89024017 Msa0385490:CDS 20.0%
! GTTAAAATGTGGTGAAATTA+GGG + chr3_1:89018253-89018272 None:intergenic 25.0%
! TGTTAAAATGTGGTGAAATT+AGG + chr3_1:89018254-89018273 None:intergenic 25.0%
!!! CGAGTTTTATTGTTAAAATG+TGG + chr3_1:89018264-89018283 None:intergenic 25.0%
! TTAATTGTGAATGAATCATC+AGG - chr3_1:89018294-89018313 Msa0385490:three_prime_UTR 25.0%
! ATAGTGAAATGGAAAAGAAA+AGG + chr3_1:89019005-89019024 None:intergenic 25.0%
! ACTTGAACAAAATAGTGAAA+TGG + chr3_1:89019016-89019035 None:intergenic 25.0%
!! ACTATTTTGTTCAAGTGTTT+AGG - chr3_1:89019020-89019039 Msa0385490:intron 25.0%
!! CTATTTTGTTCAAGTGTTTA+GGG - chr3_1:89019021-89019040 Msa0385490:intron 25.0%
!! TTAAACTAGTACTGTTTTGT+GGG - chr3_1:89019123-89019142 Msa0385490:intron 25.0%
! AAGATGTTATGTGTATATGA+AGG - chr3_1:89019506-89019525 Msa0385490:intron 25.0%
! GTGTATATGAAGGTTTAATA+AGG - chr3_1:89019516-89019535 Msa0385490:intron 25.0%
!!! TAATATTTTAGATAAAGGGG+GGG - chr3_1:89019824-89019843 Msa0385490:intron 25.0%
! AAGGTTAATTGGTTAAAAGA+AGG + chr3_1:89019964-89019983 None:intergenic 25.0%
!!! CAGATTTTGATTTATGAGAT+GGG + chr3_1:89020129-89020148 None:intergenic 25.0%
!!! ACAGATTTTGATTTATGAGA+TGG + chr3_1:89020130-89020149 None:intergenic 25.0%
! ATAACAGAACAATAAACAAG+TGG - chr3_1:89020177-89020196 Msa0385490:intron 25.0%
! TAACAGAACAATAAACAAGT+GGG - chr3_1:89020178-89020197 Msa0385490:intron 25.0%
! TAAACAACACTATATTGTTG+CGG - chr3_1:89020288-89020307 Msa0385490:intron 25.0%
! TATTGCATAAAATAGAGTCA+TGG + chr3_1:89020314-89020333 None:intergenic 25.0%
!!! CTTACTTGTTATTTGATTTC+TGG - chr3_1:89020419-89020438 Msa0385490:intron 25.0%
! ACTAACTAATCATTTAACCA+GGG + chr3_1:89020641-89020660 None:intergenic 25.0%
! AACTAACTAATCATTTAACC+AGG + chr3_1:89020642-89020661 None:intergenic 25.0%
!! TTTTGGTACTTCTTTTTGAA+AGG - chr3_1:89020750-89020769 Msa0385490:intron 25.0%
!! AAACTTTTGACAACTTATCA+AGG + chr3_1:89021154-89021173 None:intergenic 25.0%
! CTACTTACATATTTAGTTGT+AGG - chr3_1:89021563-89021582 Msa0385490:intron 25.0%
! AAAACAAGTGAAAAGACAAT+GGG - chr3_1:89021607-89021626 Msa0385490:intron 25.0%
!! TGTTTGTTAATATAAACCGA+AGG + chr3_1:89021719-89021738 None:intergenic 25.0%
! AAACATGACTAGTATTATAC+AGG - chr3_1:89021734-89021753 Msa0385490:intron 25.0%
! AACATGACTAGTATTATACA+GGG - chr3_1:89021735-89021754 Msa0385490:intron 25.0%
! GAAAAGAAGTTAGATATTAG+TGG + chr3_1:89021817-89021836 None:intergenic 25.0%
! TATCATCTATGTTGAACATT+TGG + chr3_1:89021982-89022001 None:intergenic 25.0%
!!! ATCTTGTAGACAAGTTTTAT+CGG - chr3_1:89022012-89022031 Msa0385490:intron 25.0%
!!! CTCTCGATTTTTAAAACATT+GGG + chr3_1:89022146-89022165 None:intergenic 25.0%
!!! ACTCTCGATTTTTAAAACAT+TGG + chr3_1:89022147-89022166 None:intergenic 25.0%
! AAGAAACAATCTCTTAAGTT+TGG - chr3_1:89022571-89022590 Msa0385490:intron 25.0%
! AGAAACAATCTCTTAAGTTT+GGG - chr3_1:89022572-89022591 Msa0385490:intron 25.0%
! CTATGATGAAAAATAAACCA+AGG + chr3_1:89023236-89023255 None:intergenic 25.0%
!!! TAAAACCTAGCTATTTTTGT+AGG + chr3_1:89023473-89023492 None:intergenic 25.0%
! AAAATTCATTTACATCTCAC+AGG - chr3_1:89023633-89023652 Msa0385490:intron 25.0%
!! GTTTGATTTACTAGCTAAAT+GGG + chr3_1:89023713-89023732 None:intergenic 25.0%
!!! AACAATTTTAGCACTTTTGA+AGG - chr3_1:89024027-89024046 Msa0385490:CDS 25.0%
TTTCTTTACATCATCAACGA+TGG - chr3_1:89018083-89018102 Msa0385490:three_prime_UTR 30.0%
!!! TGAAATTAGGGTTTTGGATT+GGG + chr3_1:89018241-89018260 None:intergenic 30.0%
!! TGATGGTGTTTTATGATTGA+TGG - chr3_1:89018482-89018501 Msa0385490:CDS 30.0%
ATTCCATAAGCTCTTTCAAA+CGG - chr3_1:89018739-89018758 Msa0385490:intron 30.0%
AAATTCCATTAATCAGATGG+TGG + chr3_1:89018815-89018834 None:intergenic 30.0%
! TGTGTAGTTTTCTTCTTGAA+AGG - chr3_1:89018926-89018945 Msa0385490:intron 30.0%
! GTGTAGTTTTCTTCTTGAAA+GGG - chr3_1:89018927-89018946 Msa0385490:intron 30.0%
AAAATTGAACTGCTGTAGTT+TGG - chr3_1:89018962-89018981 Msa0385490:intron 30.0%
AAATTGAACTGCTGTAGTTT+GGG - chr3_1:89018963-89018982 Msa0385490:intron 30.0%
! AACTACTTGCCATTGTTATT+TGG - chr3_1:89019070-89019089 Msa0385490:intron 30.0%
! GTTAAACTAGTACTGTTTTG+TGG - chr3_1:89019122-89019141 Msa0385490:intron 30.0%
! TTTTGTGGGAATAATGTTCA+TGG - chr3_1:89019137-89019156 Msa0385490:intron 30.0%
! GTATACTTTTAAACAGAGTC+TGG - chr3_1:89019202-89019221 Msa0385490:intron 30.0%
! TTCCTTTTTCTTTGATGCTT+TGG + chr3_1:89019269-89019288 None:intergenic 30.0%
CAAAGAAAAAGGAACTCAAA+AGG - chr3_1:89019275-89019294 Msa0385490:intron 30.0%
CACTAAGATATTCATTTGTC+TGG - chr3_1:89019392-89019411 Msa0385490:intron 30.0%
CAGACATGATATTCAGATAT+TGG - chr3_1:89019625-89019644 Msa0385490:intron 30.0%
! TAATTGTCCGATACAGTTTT+GGG + chr3_1:89019678-89019697 None:intergenic 30.0%
! TTAATTGTCCGATACAGTTT+TGG + chr3_1:89019679-89019698 None:intergenic 30.0%
TGTTAGCAGAGAAATTCTAT+AGG + chr3_1:89019702-89019721 None:intergenic 30.0%
TAGAGATAGAGAAGAGAAAA+GGG + chr3_1:89019933-89019952 None:intergenic 30.0%
TTAGAGATAGAGAAGAGAAA+AGG + chr3_1:89019934-89019953 None:intergenic 30.0%
TTCATTCTAGTGAAGATCTT+TGG + chr3_1:89020106-89020125 None:intergenic 30.0%
TAAACTATTGATGTCCTCAT+AGG + chr3_1:89020221-89020240 None:intergenic 30.0%
TCTCGGATTACTAAACAATA+GGG + chr3_1:89020337-89020356 None:intergenic 30.0%
AAGAAAAGGCAACAAATTGA+TGG + chr3_1:89020402-89020421 None:intergenic 30.0%
! CTAAGTGGTTGATTAGATTT+TGG - chr3_1:89020733-89020752 Msa0385490:intron 30.0%
CTTTCTTATGGTCTATTGAT+CGG - chr3_1:89020902-89020921 Msa0385490:intron 30.0%
!!! GAATTTTCAGTTGATGATGA+AGG - chr3_1:89021017-89021036 Msa0385490:intron 30.0%
CAACTTATCAAGGCAAAATA+AGG + chr3_1:89021144-89021163 None:intergenic 30.0%
AACCTAATGGAAATTAGCTA+AGG - chr3_1:89021196-89021215 Msa0385490:CDS 30.0%
ACCTAATGGAAATTAGCTAA+GGG - chr3_1:89021197-89021216 Msa0385490:CDS 30.0%
! AGATTGGTCAATTCAGAAAA+AGG + chr3_1:89021368-89021387 None:intergenic 30.0%
AAAAAAGAAGAGGTGATAGA+GGG + chr3_1:89021394-89021413 None:intergenic 30.0%
TAAAAAAGAAGAGGTGATAG+AGG + chr3_1:89021395-89021414 None:intergenic 30.0%
AAAAAAGAAGAGGTGATAGA+GGG + chr3_1:89021394-89021413 None:intergenic 30.0%
TAAAAAAGAAGAGGTGATAG+AGG + chr3_1:89021395-89021414 None:intergenic 30.0%
GAAAACAAGTGAAAAGACAA+TGG - chr3_1:89021606-89021625 Msa0385490:intron 30.0%
AAAAGACAATGGGAAAACAA+AGG - chr3_1:89021617-89021636 Msa0385490:intron 30.0%
AAAGACAATGGGAAAACAAA+GGG - chr3_1:89021618-89021637 Msa0385490:intron 30.0%
ATTCCACTATTTACAGAGAT+TGG - chr3_1:89021663-89021682 Msa0385490:intron 30.0%
TAACCAATCTCTGTAAATAG+TGG + chr3_1:89021669-89021688 None:intergenic 30.0%
TAAAAACATTCAATGTCCTC+AGG + chr3_1:89021898-89021917 None:intergenic 30.0%
!! TACATTTTGTAATGGAAGCT+AGG - chr3_1:89021951-89021970 Msa0385490:intron 30.0%
!! ACATTTTGTAATGGAAGCTA+GGG - chr3_1:89021952-89021971 Msa0385490:intron 30.0%
!! TCTTGTAGACAAGTTTTATC+GGG - chr3_1:89022013-89022032 Msa0385490:intron 30.0%
ATCATATCACAGATTCTGAT+AGG - chr3_1:89022209-89022228 Msa0385490:intron 30.0%
TCATATCACAGATTCTGATA+GGG - chr3_1:89022210-89022229 Msa0385490:intron 30.0%
! AGTTGATATTCATAGAGATG+AGG - chr3_1:89022262-89022281 Msa0385490:intron 30.0%
GCATATTAGCAAATATACCT+AGG + chr3_1:89022486-89022505 None:intergenic 30.0%
ACATGCACAAAAATCTCTTA+AGG - chr3_1:89022544-89022563 Msa0385490:intron 30.0%
! TTAAAGTTTGGGATTACGTA+AGG - chr3_1:89022645-89022664 Msa0385490:intron 30.0%
AACCTGAACCATATTTCAAT+AGG - chr3_1:89022687-89022706 Msa0385490:intron 30.0%
ATCCTATTGAAATATGGTTC+AGG + chr3_1:89022692-89022711 None:intergenic 30.0%
GACATCATCCTATTGAAATA+TGG + chr3_1:89022698-89022717 None:intergenic 30.0%
TGGTTTATGATAGAACGTTA+TGG - chr3_1:89022884-89022903 Msa0385490:CDS 30.0%
TAAAAGAAAGGATACACGAA+AGG + chr3_1:89023178-89023197 None:intergenic 30.0%
GAAATATATACACTTTCCCT+TGG - chr3_1:89023216-89023235 Msa0385490:intron 30.0%
ATGAATTCAAAAGGAGTAGA+TGG + chr3_1:89023277-89023296 None:intergenic 30.0%
AGTTTCCTACAAAAATAGCT+AGG - chr3_1:89023465-89023484 Msa0385490:intron 30.0%
!! GGTTTTATAGGTGTATCAAA+TGG - chr3_1:89023515-89023534 Msa0385490:intron 30.0%
!!! ATGGAAGTTTTTTCTCACTT+TGG - chr3_1:89023534-89023553 Msa0385490:intron 30.0%
!!! TGGAAGTTTTTTCTCACTTT+GGG - chr3_1:89023535-89023554 Msa0385490:intron 30.0%
CTGATTATATTAAGCGACAA+GGG - chr3_1:89023674-89023693 Msa0385490:intron 30.0%
! GGTTTGATTTACTAGCTAAA+TGG + chr3_1:89023714-89023733 None:intergenic 30.0%
!!! GATCTGGTTTTATTAGGATA+TGG - chr3_1:89023872-89023891 Msa0385490:intron 30.0%
ATGAAATTGGAGTAATGCTA+AGG + chr3_1:89023915-89023934 None:intergenic 30.0%
! ATTTTTGCGGGAAATGAAAT+TGG + chr3_1:89023928-89023947 None:intergenic 30.0%
TTGTTGTGAAGCCAAAAATA+TGG + chr3_1:89024012-89024031 None:intergenic 30.0%
! AATCTTGTCTTGCTATGAAA+AGG + chr3_1:89024163-89024182 None:intergenic 30.0%
CGGTTTCTATTGTTCTTCTT+CGG + chr3_1:89018045-89018064 None:intergenic 35.0%
!!! GTGAAATTAGGGTTTTGGAT+TGG + chr3_1:89018242-89018261 None:intergenic 35.0%
! ATGTGGTGAAATTAGGGTTT+TGG + chr3_1:89018247-89018266 None:intergenic 35.0%
TTGTGTTTGGTATTGCATGA+TGG - chr3_1:89018465-89018484 Msa0385490:CDS 35.0%
TTTCTTCTTGAAAGGGTTGA+CGG - chr3_1:89018934-89018953 Msa0385490:intron 35.0%
AATTGAACTGCTGTAGTTTG+GGG - chr3_1:89018964-89018983 Msa0385490:intron 35.0%
! TTTTGTTCAAGTGTTTAGGG+TGG - chr3_1:89019024-89019043 Msa0385490:intron 35.0%
! TTAGGGTGGATTTCATAATG+TGG - chr3_1:89019038-89019057 Msa0385490:CDS 35.0%
AACAGAGAGCCAAATAACAA+TGG + chr3_1:89019082-89019101 None:intergenic 35.0%
!!! GCTCTCTGTTTTTTGTTATG+CGG - chr3_1:89019092-89019111 Msa0385490:intron 35.0%
ATCATTATGCTCTTAGACAC+AGG + chr3_1:89019446-89019465 None:intergenic 35.0%
! TTTCGAGAAACTCTCCATTT+TGG + chr3_1:89019483-89019502 None:intergenic 35.0%
CACATGATAGGATTACTTTG+AGG - chr3_1:89019593-89019612 Msa0385490:intron 35.0%
ACATCATCCCAAAACTGTAT+CGG - chr3_1:89019668-89019687 Msa0385490:intron 35.0%
AACAACCAGTTAAAACCTGA+AGG - chr3_1:89019718-89019737 Msa0385490:intron 35.0%
TGGTCATGACATGGTAAATA+CGG - chr3_1:89019744-89019763 Msa0385490:intron 35.0%
ATGACACTCTCAAGGTTAAT+TGG + chr3_1:89019975-89019994 None:intergenic 35.0%
! TTTTGTACACAACAGAGCAA+AGG - chr3_1:89020149-89020168 Msa0385490:intron 35.0%
GTCTCGGATTACTAAACAAT+AGG + chr3_1:89020338-89020357 None:intergenic 35.0%
! TCTTAAACTAGTGTTTTCCC+TGG - chr3_1:89020621-89020640 Msa0385490:intron 35.0%
! GTTGTTGATTGAAGTCTAAG+TGG - chr3_1:89020718-89020737 Msa0385490:intron 35.0%
AAGACCGTTATTCAGAAATG+CGG - chr3_1:89020797-89020816 Msa0385490:intron 35.0%
!! TCTCAGGATTAGCTTTCTTA+TGG - chr3_1:89020890-89020909 Msa0385490:intron 35.0%
TTAGAGTTTGACAAGTGGAA+AGG - chr3_1:89020993-89021012 Msa0385490:intron 35.0%
ACCCTTAGCTAATTTCCATT+AGG + chr3_1:89021201-89021220 None:intergenic 35.0%
GGTTATAATTGTAACCGTGT+GGG - chr3_1:89021218-89021237 Msa0385490:CDS 35.0%
GTTATAATTGTAACCGTGTG+GGG - chr3_1:89021219-89021238 Msa0385490:CDS 35.0%
TTATAATTGTAACCGTGTGG+GGG - chr3_1:89021220-89021239 Msa0385490:CDS 35.0%
AGAATTTAAATTGCGCACAC+AGG - chr3_1:89021324-89021343 Msa0385490:intron 35.0%
! TGTTTGTTGCTGTTAGTTTG+TGG - chr3_1:89021451-89021470 Msa0385490:intron 35.0%
!! GTTTGTTGCTGTTAGTTTGT+GGG - chr3_1:89021452-89021471 Msa0385490:intron 35.0%
!!! GTAGGAATTTTTAGCAGTGT+TGG - chr3_1:89021581-89021600 Msa0385490:intron 35.0%
AACAAAGGGTGATGTAATAG+AGG - chr3_1:89021632-89021651 Msa0385490:intron 35.0%
TCTTATACTCCATAAGCCAT+CGG - chr3_1:89021760-89021779 Msa0385490:intron 35.0%
GAAGTTAGATATTAGTGGGA+TGG + chr3_1:89021812-89021831 None:intergenic 35.0%
!! CTTGTAGACAAGTTTTATCG+GGG - chr3_1:89022014-89022033 Msa0385490:intron 35.0%
TCTTGTGATTCTCAATTGCA+TGG - chr3_1:89022319-89022338 Msa0385490:intron 35.0%
GATTCAGTTAAACTAAGCCT+AGG - chr3_1:89022466-89022485 Msa0385490:intron 35.0%
! TTTTATGGCGTTAACATGAC+TGG - chr3_1:89022733-89022752 Msa0385490:intron 35.0%
!! GTTTCGACTGGGTTTTATAT+TGG - chr3_1:89022774-89022793 Msa0385490:intron 35.0%
ATGCATAATGAGGCTATCAT+AGG - chr3_1:89022848-89022867 Msa0385490:intron 35.0%
ATAATGAGGCTATCATAGGA+AGG - chr3_1:89022852-89022871 Msa0385490:intron 35.0%
! TCATAGGAAGGATTAGCATA+TGG - chr3_1:89022864-89022883 Msa0385490:intron 35.0%
TGTTCTTGAAACTGACTGAT+CGG - chr3_1:89022962-89022981 Msa0385490:intron 35.0%
! AAGTAATGGAGCCCTATTTA+CGG - chr3_1:89023004-89023023 Msa0385490:intron 35.0%
ATGACACTGTAAACTTATGC+AGG - chr3_1:89023109-89023128 Msa0385490:intron 35.0%
TCAAAAGGAGTAGATGGTAA+TGG + chr3_1:89023271-89023290 None:intergenic 35.0%
ACATGGCATCTAATCTAACA+TGG + chr3_1:89023314-89023333 None:intergenic 35.0%
TACCCTATTGTTGCAAGTTA+TGG - chr3_1:89023411-89023430 Msa0385490:intron 35.0%
ACCCTATTGTTGCAAGTTAT+GGG - chr3_1:89023412-89023431 Msa0385490:intron 35.0%
!! AGCATGTACGTAGGTTTTAT+AGG - chr3_1:89023503-89023522 Msa0385490:intron 35.0%
GCTGATTATATTAAGCGACA+AGG - chr3_1:89023673-89023692 Msa0385490:intron 35.0%
ATTATATTAAGCGACAAGGG+AGG - chr3_1:89023677-89023696 Msa0385490:intron 35.0%
TTATATTAAGCGACAAGGGA+GGG - chr3_1:89023678-89023697 Msa0385490:intron 35.0%
!! TTGGCTCTAAATCAATGAAC+TGG + chr3_1:89023735-89023754 None:intergenic 35.0%
!!! TGTCAACTGACATGGTTTTT+TGG - chr3_1:89023798-89023817 Msa0385490:CDS 35.0%
! AGAAATAGAATGCACTGATC+TGG - chr3_1:89023856-89023875 Msa0385490:CDS 35.0%
!!! TGCACTGATCTGGTTTTATT+AGG - chr3_1:89023866-89023885 Msa0385490:intron 35.0%
! ATTGTTCTTCTTCGGTTTGC+AGG + chr3_1:89018037-89018056 None:intergenic 40.0%
CACTAATTCCACTCTACCTA+TGG - chr3_1:89018148-89018167 Msa0385490:three_prime_UTR 40.0%
GCAAACCTGAAGAGATTCTT+CGG + chr3_1:89018214-89018233 None:intergenic 40.0%
AATAAACCTTGTTGCGTTGC+AGG + chr3_1:89018412-89018431 None:intergenic 40.0%
TCAACTTATACGAGCTCTCA+AGG + chr3_1:89018720-89018739 None:intergenic 40.0%
AGACCGTTTGAAAGAGCTTA+TGG + chr3_1:89018745-89018764 None:intergenic 40.0%
! TTCCATTAATCAGATGGTGG+TGG + chr3_1:89018812-89018831 None:intergenic 40.0%
TCAACACACGTTCACGTTAA+AGG - chr3_1:89018875-89018894 Msa0385490:intron 40.0%
ATTGAACTGCTGTAGTTTGG+GGG - chr3_1:89018965-89018984 Msa0385490:intron 40.0%
! GGCCAAAGCATCAAAGAAAA+AGG - chr3_1:89019264-89019283 Msa0385490:intron 40.0%
AAATGAACCAGTTTGCAACG+TGG + chr3_1:89019341-89019360 None:intergenic 40.0%
CAAACTGTCATGCACATGAT+AGG - chr3_1:89019581-89019600 Msa0385490:intron 40.0%
!! CAGTTCCTTCAGGTTTTAAC+TGG + chr3_1:89019726-89019745 None:intergenic 40.0%
CAGTTAAAACCTGAAGGAAC+TGG - chr3_1:89019724-89019743 Msa0385490:intron 40.0%
AATACGGACATTCACCTGTT+TGG - chr3_1:89019760-89019779 Msa0385490:intron 40.0%
AACATCAAACCGTTCCAAAC+AGG + chr3_1:89019777-89019796 None:intergenic 40.0%
GGGTAGGAGAGATAATACAA+AGG - chr3_1:89019866-89019885 Msa0385490:intron 40.0%
AGAGAAAAGGGTCTCAATCT+CGG + chr3_1:89019921-89019940 None:intergenic 40.0%
AGTAGAAAATCCACCAAGGA+GGG + chr3_1:89020003-89020022 None:intergenic 40.0%
GAACAGTAGAAAATCCACCA+AGG + chr3_1:89020007-89020026 None:intergenic 40.0%
CTTTGGCAAACAAACAGCTT+TGG + chr3_1:89020089-89020108 None:intergenic 40.0%
CAAATCATTGTGCAGAGTCT+CGG + chr3_1:89020354-89020373 None:intergenic 40.0%
!! TATGCCTGCTTGTTATTCGA+TGG - chr3_1:89020678-89020697 Msa0385490:intron 40.0%
!! ATGCCTGCTTGTTATTCGAT+GGG - chr3_1:89020679-89020698 Msa0385490:intron 40.0%
ACCTCCGCATTTCTGAATAA+CGG + chr3_1:89020804-89020823 None:intergenic 40.0%
! GGAAAAGCACACGTTCATAT+AGG - chr3_1:89020923-89020942 Msa0385490:intron 40.0%
! TGATGAAGGTACACTTGAAG+AGG - chr3_1:89021031-89021050 Msa0385490:intron 40.0%
AAGGCAAAATAAGGAGAGCA+AGG + chr3_1:89021135-89021154 None:intergenic 40.0%
GGGTTATAATTGTAACCGTG+TGG - chr3_1:89021217-89021236 Msa0385490:CDS 40.0%
TATAATTGTAACCGTGTGGG+GGG - chr3_1:89021221-89021240 Msa0385490:CDS 40.0%
TCTGCAGCAAGATCTTCTAA+GGG + chr3_1:89021307-89021326 None:intergenic 40.0%
TTCTGCAGCAAGATCTTCTA+AGG + chr3_1:89021308-89021327 None:intergenic 40.0%
AGGTGATAGAGGGAATAGAT+TGG + chr3_1:89021384-89021403 None:intergenic 40.0%
TCACACGATGAGTTATCCTT+CGG - chr3_1:89021700-89021719 Msa0385490:intron 40.0%
ACATTCAATGTCCTCAGGAT+AGG + chr3_1:89021893-89021912 None:intergenic 40.0%
!! TAGACAAGTTTTATCGGGGA+AGG - chr3_1:89022018-89022037 Msa0385490:intron 40.0%
!! AGACAAGTTTTATCGGGGAA+GGG - chr3_1:89022019-89022038 Msa0385490:intron 40.0%
CATGTCATAGAGTTTCGACT+GGG - chr3_1:89022763-89022782 Msa0385490:intron 40.0%
ATAGCCTCATTATGCATAGC+CGG + chr3_1:89022845-89022864 None:intergenic 40.0%
GCACCAACAAACCGTAAATA+GGG + chr3_1:89023018-89023037 None:intergenic 40.0%
AGCACCAACAAACCGTAAAT+AGG + chr3_1:89023019-89023038 None:intergenic 40.0%
TATCAATCGCATCACATCTC+TGG - chr3_1:89023136-89023155 Msa0385490:intron 40.0%
! ATCACATCTCTGGAAAGCAT+GGG - chr3_1:89023146-89023165 Msa0385490:intron 40.0%
! GCCCATAACTTGCAACAATA+GGG + chr3_1:89023416-89023435 None:intergenic 40.0%
! AGCCCATAACTTGCAACAAT+AGG + chr3_1:89023417-89023436 None:intergenic 40.0%
!! TATTTTGTCAGGTCGGCTTT+CGG - chr3_1:89023591-89023610 Msa0385490:intron 40.0%
TCCTCAGCATAATGAGTCTT+TGG + chr3_1:89023754-89023773 None:intergenic 40.0%
TGCTGAGGACATTAGTAACA+TGG - chr3_1:89023765-89023784 Msa0385490:intron 40.0%
TGAGGACATTAGTAACATGG+AGG - chr3_1:89023768-89023787 Msa0385490:intron 40.0%
GAGATAACTGTCAACTGACA+TGG - chr3_1:89023790-89023809 Msa0385490:CDS 40.0%
TGAAACCAGTTTCAGACAGA+TGG - chr3_1:89024082-89024101 Msa0385490:exon 40.0%
! TACTTCCATCTGTCTGAAAC+TGG + chr3_1:89024090-89024109 None:intergenic 40.0%
! CTGCAATGAGAAGTGTAGAG+AGG + chr3_1:89018128-89018147 None:intergenic 45.0%
ATGAGGATTGAGAATCGCGA+TGG + chr3_1:89018179-89018198 None:intergenic 45.0%
TTCGGAGGAAGATGAAGATG+AGG + chr3_1:89018196-89018215 None:intergenic 45.0%
TTCCTCCGAAGAATCTCTTC+AGG - chr3_1:89018206-89018225 Msa0385490:three_prime_UTR 45.0%
AACCTGAAGAGATTCTTCGG+AGG + chr3_1:89018211-89018230 None:intergenic 45.0%
!! CATTAATCAGATGGTGGTGG+TGG + chr3_1:89018809-89018828 None:intergenic 45.0%
CACCACCACCATCTGATTAA+TGG - chr3_1:89018807-89018826 Msa0385490:intron 45.0%
GAAAGTGACAATGAAGCTGC+TGG - chr3_1:89019229-89019248 Msa0385490:intron 45.0%
AGGAACTCAAAAGGCAAGAG+AGG - chr3_1:89019284-89019303 Msa0385490:intron 45.0%
GGAACTCAAAAGGCAAGAGA+GGG - chr3_1:89019285-89019304 Msa0385490:intron 45.0%
ATGTCATGACCAGTTCCTTC+AGG + chr3_1:89019736-89019755 None:intergenic 45.0%
TGAAGGAACTGGTCATGACA+TGG - chr3_1:89019735-89019754 Msa0385490:intron 45.0%
GGACATTCACCTGTTTGGAA+CGG - chr3_1:89019765-89019784 Msa0385490:intron 45.0%
TTTAGATAAAGGGGGGGCAA+AGG - chr3_1:89019830-89019849 Msa0385490:intron 45.0%
!! GGGTTTTGATGACACTCTCA+AGG + chr3_1:89019983-89020002 None:intergenic 45.0%
AGTGTCATCAAAACCCTCCT+TGG - chr3_1:89019987-89020006 Msa0385490:intron 45.0%
CAGTAGAAAATCCACCAAGG+AGG + chr3_1:89020004-89020023 None:intergenic 45.0%
!! TGCCTGCTTGTTATTCGATG+GGG - chr3_1:89020680-89020699 Msa0385490:intron 45.0%
! TTGTTATTCGATGGGGGAGA+GGG - chr3_1:89020687-89020706 Msa0385490:intron 45.0%
TTTGAAAGGCCGAAGAAGCT+CGG - chr3_1:89020764-89020783 Msa0385490:intron 45.0%
ACCGTTATTCAGAAATGCGG+AGG - chr3_1:89020800-89020819 Msa0385490:intron 45.0%
TTCAGAAATGCGGAGGTTGA+AGG - chr3_1:89020807-89020826 Msa0385490:intron 45.0%
GTGAGTCAACATCCTTGTTC+TGG - chr3_1:89020862-89020881 Msa0385490:CDS 45.0%
CCTGAGACTAAACCAGAACA+AGG + chr3_1:89020877-89020896 None:intergenic 45.0%
!! CCTTGTTCTGGTTTAGTCTC+AGG - chr3_1:89020874-89020893 Msa0385490:CDS 45.0%
GCACACGTTCATATAGGAAG+AGG - chr3_1:89020929-89020948 Msa0385490:intron 45.0%
AGAGGAAGCCAAAGCTCAAA+AGG - chr3_1:89020947-89020966 Msa0385490:intron 45.0%
AAGCCAAAGCTCAAAAGGCT+AGG - chr3_1:89020952-89020971 Msa0385490:intron 45.0%
AGCCAAAGCTCAAAAGGCTA+GGG - chr3_1:89020953-89020972 Msa0385490:intron 45.0%
!! TTCCCTAGCCTTTTGAGCTT+TGG + chr3_1:89020958-89020977 None:intergenic 45.0%
CTGCGTTAGAGTTTGACAAG+TGG - chr3_1:89020988-89021007 Msa0385490:intron 45.0%
CATTAGGTTTCGATGCCCTA+TGG + chr3_1:89021185-89021204 None:intergenic 45.0%
!! CATAGGGCATCGAAACCTAA+TGG - chr3_1:89021183-89021202 Msa0385490:CDS 45.0%
CAGTTATAAAACCCCCCACA+CGG + chr3_1:89021235-89021254 None:intergenic 45.0%
TTGTGGGAGAAACAGTGTCA+CGG - chr3_1:89021468-89021487 Msa0385490:intron 45.0%
ATGGCAGTGAGTGATGTAAG+TGG + chr3_1:89021786-89021805 None:intergenic 45.0%
CTTACATCACTCACTGCCAT+CGG - chr3_1:89021786-89021805 Msa0385490:intron 45.0%
AGAAAGATCAGCCTATCCTG+AGG - chr3_1:89021879-89021898 Msa0385490:intron 45.0%
CAGCAAGTAGTTAGACAGCT+TGG + chr3_1:89022436-89022455 None:intergenic 45.0%
CCAGTCGAAACTCTATGACA+TGG + chr3_1:89022765-89022784 None:intergenic 45.0%
CCATGTCATAGAGTTTCGAC+TGG - chr3_1:89022762-89022781 Msa0385490:intron 45.0%
TAAAAGGGGAGGGTTGTGTT+AGG + chr3_1:89022810-89022829 None:intergenic 45.0%
! ACACAACCCTCCCCTTTTAT+TGG - chr3_1:89022811-89022830 Msa0385490:intron 45.0%
! CACAACCCTCCCCTTTTATT+GGG - chr3_1:89022812-89022831 Msa0385490:intron 45.0%
GAGCCCTATTTACGGTTTGT+TGG - chr3_1:89023012-89023031 Msa0385490:intron 45.0%
! CATCACATCTCTGGAAAGCA+TGG - chr3_1:89023145-89023164 Msa0385490:intron 45.0%
TAGATGCCATGTCATTCGCA+AGG - chr3_1:89023322-89023341 Msa0385490:intron 45.0%
AGATGCCATGTCATTCGCAA+GGG - chr3_1:89023323-89023342 Msa0385490:intron 45.0%
ACCTACGTACATGCTAGAGT+AGG + chr3_1:89023498-89023517 None:intergenic 45.0%
TTTCTCACTTTGGGCTGTCT+AGG - chr3_1:89023544-89023563 Msa0385490:intron 45.0%
TTCTCACTTTGGGCTGTCTA+GGG - chr3_1:89023545-89023564 Msa0385490:intron 45.0%
!! ATTTTGTCAGGTCGGCTTTC+GGG - chr3_1:89023592-89023611 Msa0385490:intron 45.0%
! TTTCGGGTGTCATGGATGAT+AGG - chr3_1:89023608-89023627 Msa0385490:intron 45.0%
! TTCGGGTGTCATGGATGATA+GGG - chr3_1:89023609-89023628 Msa0385490:intron 45.0%
GCCAAAGACTCATTATGCTG+AGG - chr3_1:89023750-89023769 Msa0385490:intron 45.0%
!! AACAATTAAATAATATTTAA+TGG + chr3_1:89020562-89020581 None:intergenic 5.0%
TGGCGTTTCCATAGGTAGAG+TGG + chr3_1:89018159-89018178 None:intergenic 50.0%
AATCGCGATGGCGTTTCCAT+AGG + chr3_1:89018167-89018186 None:intergenic 50.0%
AAACCTTGTTGCGTTGCAGG+CGG + chr3_1:89018409-89018428 None:intergenic 50.0%
CCAGTTTGCAACGTGGAATG+AGG + chr3_1:89019334-89019353 None:intergenic 50.0%
CCTCATTCCACGTTGCAAAC+TGG - chr3_1:89019331-89019350 Msa0385490:intron 50.0%
GGCAAAGGAGGAGGAAGAAT+GGG - chr3_1:89019845-89019864 Msa0385490:intron 50.0%
GCAAAGGAGGAGGAAGAATG+GGG - chr3_1:89019846-89019865 Msa0385490:intron 50.0%
GTCATCAAAACCCTCCTTGG+TGG - chr3_1:89019990-89020009 Msa0385490:intron 50.0%
AAGGTTTCTGCTGGCACTCA+TGG + chr3_1:89020040-89020059 None:intergenic 50.0%
GAGCAGAAGAAGGTTTCTGC+TGG + chr3_1:89020049-89020068 None:intergenic 50.0%
AAGCGAGTGCAAGTCCTATG+AGG - chr3_1:89020204-89020223 Msa0385490:intron 50.0%
!! GCCTGCTTGTTATTCGATGG+GGG - chr3_1:89020681-89020700 Msa0385490:intron 50.0%
TCCCCCATCGAATAACAAGC+AGG + chr3_1:89020685-89020704 None:intergenic 50.0%
!! CTTGTTATTCGATGGGGGAG+AGG - chr3_1:89020686-89020705 Msa0385490:intron 50.0%
TGTTATTCGATGGGGGAGAG+GGG - chr3_1:89020688-89020707 Msa0385490:intron 50.0%
CTTTGACTGCCGAGCTTCTT+CGG + chr3_1:89020776-89020795 None:intergenic 50.0%
! GTTGAAGGATGAAGAGCGTG+AGG - chr3_1:89020822-89020841 Msa0385490:intron 50.0%
AGCTCAAAAGGCTAGGGAAG+AGG - chr3_1:89020959-89020978 Msa0385490:intron 50.0%
AGGTACACTTGAAGAGGAGC+AGG - chr3_1:89021037-89021056 Msa0385490:intron 50.0%
TGTGGGAGAAACAGTGTCAC+GGG - chr3_1:89021469-89021488 Msa0385490:intron 50.0%
TGTAAGTGGCCGATGGCTTA+TGG + chr3_1:89021772-89021791 None:intergenic 50.0%
TGAGTGATGTAAGTGGCCGA+TGG + chr3_1:89021779-89021798 None:intergenic 50.0%
GATATTAGTGGGATGGCCGA+TGG + chr3_1:89021805-89021824 None:intergenic 50.0%
TCGAGAGTCTACGCAAGATC+AGG - chr3_1:89022159-89022178 Msa0385490:intron 50.0%
AGAGTCTACGCAAGATCAGG+AGG - chr3_1:89022162-89022181 Msa0385490:intron 50.0%
TGACAGCTGACATCTCAGCT+AGG + chr3_1:89022395-89022414 None:intergenic 50.0%
CCAAGCCCAATAAAAGGGGA+GGG + chr3_1:89022820-89022839 None:intergenic 50.0%
! CCTCCCCTTTTATTGGGCTT+GGG - chr3_1:89022818-89022837 Msa0385490:intron 50.0%
GGTCCCAAGCCCAATAAAAG+GGG + chr3_1:89022824-89022843 None:intergenic 50.0%
CGGTCCCAAGCCCAATAAAA+GGG + chr3_1:89022825-89022844 None:intergenic 50.0%
! CCTTTTATTGGGCTTGGGAC+CGG - chr3_1:89022823-89022842 Msa0385490:intron 50.0%
ACTAAGTGGGGTCGGCTATA+TGG + chr3_1:89022921-89022940 None:intergenic 50.0%
ATATAGCCGACCCCACTTAG+TGG - chr3_1:89022920-89022939 Msa0385490:CDS 50.0%
TATAGCCGACCCCACTTAGT+GGG - chr3_1:89022921-89022940 Msa0385490:CDS 50.0%
! AAGCCTTGTCCCACTAAGTG+GGG + chr3_1:89022933-89022952 None:intergenic 50.0%
! CAAGCCTTGTCCCACTAAGT+GGG + chr3_1:89022934-89022953 None:intergenic 50.0%
TCAAGCCCTTGCGAATGACA+TGG + chr3_1:89023331-89023350 None:intergenic 50.0%
GCCTACTCTAGCATGTACGT+AGG - chr3_1:89023494-89023513 Msa0385490:intron 50.0%
TCTCACTTTGGGCTGTCTAG+GGG - chr3_1:89023546-89023565 Msa0385490:intron 50.0%
! TCGGGTGTCATGGATGATAG+GGG - chr3_1:89023610-89023629 Msa0385490:intron 50.0%
! AGCTGCTGGTGATGAGCATG+AGG - chr3_1:89019243-89019262 Msa0385490:intron 55.0%
AGATAAAGGGGGGGCAAAGG+AGG - chr3_1:89019833-89019852 Msa0385490:intron 55.0%
GGGCAAAGGAGGAGGAAGAA+TGG - chr3_1:89019844-89019863 Msa0385490:intron 55.0%
AGGAGGAGGAAGAATGGGGT+AGG - chr3_1:89019850-89019869 Msa0385490:intron 55.0%
TCTCGGCTGAGAGGCTACAA+TGG + chr3_1:89019904-89019923 None:intergenic 55.0%
GCTCGAGAGTGAGCAGAAGA+AGG + chr3_1:89020059-89020078 None:intergenic 55.0%
GTTATTCGATGGGGGAGAGG+GGG - chr3_1:89020689-89020708 Msa0385490:intron 55.0%
TTATTCGATGGGGGAGAGGG+GGG - chr3_1:89020690-89020709 Msa0385490:intron 55.0%
GTCTACGCAAGATCAGGAGG+TGG - chr3_1:89022165-89022184 Msa0385490:intron 55.0%
! CCCTCCCCTTTTATTGGGCT+TGG - chr3_1:89022817-89022836 Msa0385490:intron 55.0%
CCCAAGCCCAATAAAAGGGG+AGG + chr3_1:89022821-89022840 None:intergenic 55.0%
CCGGTCCCAAGCCCAATAAA+AGG + chr3_1:89022826-89022845 None:intergenic 55.0%
GGGACCGGCTATGCATAATG+AGG - chr3_1:89022838-89022857 Msa0385490:intron 55.0%
CTTGTCCCACTAAGTGGGGT+CGG + chr3_1:89022929-89022948 None:intergenic 55.0%
! CCAAGCCTTGTCCCACTAAG+TGG + chr3_1:89022935-89022954 None:intergenic 55.0%
CCACTTAGTGGGACAAGGCT+TGG - chr3_1:89022932-89022951 Msa0385490:CDS 55.0%
CGTGCAGCAGGTTCTCTGAC+TGG + chr3_1:89018322-89018341 None:intergenic 60.0%
CAACCGTTCTCCGACGCATG+CGG + chr3_1:89018360-89018379 None:intergenic 60.0%
GGCAAGAGAGGGAAGCTCGA+CGG - chr3_1:89019296-89019315 Msa0385490:intron 60.0%
TAAAGGGGGGGCAAAGGAGG+AGG - chr3_1:89019836-89019855 Msa0385490:intron 60.0%
GGGTCTCAATCTCGGCTGAG+AGG + chr3_1:89019913-89019932 None:intergenic 60.0%
! TGAGGCGCAGGAGCGTAAGT+TGG - chr3_1:89020840-89020859 Msa0385490:intron 60.0%
CGACCCCACTTAGTGGGACA+AGG - chr3_1:89022927-89022946 Msa0385490:CDS 60.0%
! AGGTCGGCTTTCGGGTGTCA+TGG - chr3_1:89023600-89023619 Msa0385490:intron 60.0%
TCGCCGCATGCGTCGGAGAA+CGG - chr3_1:89018354-89018373 Msa0385490:three_prime_UTR 65.0%
CGTCGGAGAACGGTTGCGTC+TGG - chr3_1:89018364-89018383 Msa0385490:three_prime_UTR 65.0%
GCTCCGCCTGCAACGCAACA+AGG - chr3_1:89018403-89018422 Msa0385490:CDS 65.0%
AGAGAGGGAAGCTCGACGGC+AGG - chr3_1:89019300-89019319 Msa0385490:intron 65.0%
! GGATGAAGAGCGTGAGGCGC+AGG - chr3_1:89020828-89020847 Msa0385490:intron 65.0%
GTAGCGGTGGCACGTGCAGC+AGG + chr3_1:89018334-89018353 None:intergenic 70.0%
ACGCATGCGGCGAGTAGCGG+TGG + chr3_1:89018347-89018366 None:intergenic 70.0%
CCGACGCATGCGGCGAGTAG+CGG + chr3_1:89018350-89018369 None:intergenic 70.0%
CCGCTACTCGCCGCATGCGT+CGG - chr3_1:89018347-89018366 Msa0385490:three_prime_UTR 70.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 89018006 89024189 89018006 ID=Msa0385490;Name=Msa0385490
chr3_1 mRNA 89018006 89024189 89018006 ID=Msa0385490-mRNA-1;Parent=Msa0385490;Name=Msa0385490-mRNA-1;_AED=0.03;_eAED=0.03;_QI=96|1|1|1|1|1|8|382|295
chr3_1 exon 89018006 89018593 89018006 ID=Msa0385490-mRNA-1:exon:24180;Parent=Msa0385490-mRNA-1
chr3_1 exon 89019028 89019064 89019028 ID=Msa0385490-mRNA-1:exon:24179;Parent=Msa0385490-mRNA-1
chr3_1 exon 89020850 89020906 89020850 ID=Msa0385490-mRNA-1:exon:24178;Parent=Msa0385490-mRNA-1
chr3_1 exon 89021092 89021250 89021092 ID=Msa0385490-mRNA-1:exon:24177;Parent=Msa0385490-mRNA-1
chr3_1 exon 89021334 89021423 89021334 ID=Msa0385490-mRNA-1:exon:24176;Parent=Msa0385490-mRNA-1
chr3_1 exon 89022874 89022977 89022874 ID=Msa0385490-mRNA-1:exon:24175;Parent=Msa0385490-mRNA-1
chr3_1 exon 89023771 89023879 89023771 ID=Msa0385490-mRNA-1:exon:24174;Parent=Msa0385490-mRNA-1
chr3_1 exon 89023968 89024189 89023968 ID=Msa0385490-mRNA-1:exon:24173;Parent=Msa0385490-mRNA-1
chr3_1 five_prime_UTR 89024094 89024189 89024094 ID=Msa0385490-mRNA-1:five_prime_utr;Parent=Msa0385490-mRNA-1
chr3_1 CDS 89023968 89024093 89023968 ID=Msa0385490-mRNA-1:cds;Parent=Msa0385490-mRNA-1
chr3_1 CDS 89023771 89023879 89023771 ID=Msa0385490-mRNA-1:cds;Parent=Msa0385490-mRNA-1
chr3_1 CDS 89022874 89022977 89022874 ID=Msa0385490-mRNA-1:cds;Parent=Msa0385490-mRNA-1
chr3_1 CDS 89021334 89021423 89021334 ID=Msa0385490-mRNA-1:cds;Parent=Msa0385490-mRNA-1
chr3_1 CDS 89021092 89021250 89021092 ID=Msa0385490-mRNA-1:cds;Parent=Msa0385490-mRNA-1
chr3_1 CDS 89020850 89020906 89020850 ID=Msa0385490-mRNA-1:cds;Parent=Msa0385490-mRNA-1
chr3_1 CDS 89019028 89019064 89019028 ID=Msa0385490-mRNA-1:cds;Parent=Msa0385490-mRNA-1
chr3_1 CDS 89018388 89018593 89018388 ID=Msa0385490-mRNA-1:cds;Parent=Msa0385490-mRNA-1
chr3_1 three_prime_UTR 89018006 89018387 89018006 ID=Msa0385490-mRNA-1:three_prime_utr;Parent=Msa0385490-mRNA-1
Gene Sequence

>Msa0385490

ATGGATGATTTTTTCGTAGCAATCCTCTCTACACTTCTCATTGCAGCACTAATTCCACTCTACCTATGGAAACGCCATCGCGATTCTCAATCCTCATCTTCATCTTCCTCCGAAGAATCTCTTCAGGCTCCAGTCAGAGAACCTGCTGCACGTGCCACCGCTACTCGCCGCATGCGTCGGAGAACGGTTGCGTCTGGTGCTAGCTCTTCATCAGCTCCGCCTGCAACGCAACAAGAGTCTGGAGATGAAAGTGACAATGAAGCTGCTGGTGATGAGCATGAGGCCAAAGCATCAAAGAAAAAGGAACTCAAAAGGCAAGAGAGGGAAGCTCGACGGCAGGCCGAAGAAGCTCGGCAGTCAAAGCAAGACCGTTATTCAGAAATGCGGAGGTTGAAGGATGAAGAGCGTGAGGCGCAGGAGCGTAAGTTGGAAGAGGAAGCCAAAGCTCAAAAGGCTAGGGAAGAGGAAGCTGCTGCGTTAGAGTTTGACAAGTGGAAAGGTGAATTTTCAGTTGATGATGAAGGTACACTTGAAGAGGAGCAGGATAAAACTGAAGATTTGCTTACCAATTTTGTTGAATATATAAAGAAGCACAAATGTGTTCCCTTAGAAGATCTTGCTGCAGAATTTAAATTGCGCACACAGGAATGTATCAATCGCATCACATCTCTGGAAAGCATGGGTCGGCTTTCGGGTGTCATGGATGATAGGGGAAAATTCATTTACATCTCACAGGAAGAGATGAAAGCTGTTGCTGATTATATTAAGCGACAAGGGAGGGTTAGCATTTCCCATTTAGCTAGTAAATCAAACCAGTTCATTGATTTAGAGCCAAAGACTCATTATGCTGAGGACATTAGTAACATGGAGGAGATAACTGTCAACTGA

Protein sequence

>Msa0385490

MDDFFVAILSTLLIAALIPLYLWKRHRDSQSSSSSSSEESLQAPVREPAARATATRRMRRRTVASGASSSSAPPATQQESGDESDNEAAGDEHEAKASKKKELKRQEREARRQAEEARQSKQDRYSEMRRLKDEEREAQERKLEEEAKAQKAREEEAAALEFDKWKGEFSVDDEGTLEEEQDKTEDLLTNFVEYIKKHKCVPLEDLAAEFKLRTQECINRITSLESMGRLSGVMDDRGKFIYISQEEMKAVADYIKRQGRVSISHLASKSNQFIDLEPKTHYAEDISNMEEITVN*