Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0222870 | XP_013465396.1 | 92.641 | 693 | 46 | 3 | 1 | 689 | 1 | 692 | 0.0 | 1305 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0222870 | sp|F4HSD5|TRM32_ARATH | 26.093 | 709 | 342 | 27 | 1 | 687 | 1 | 549 | 3.11e-36 | 147 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0222870 | A0A072VCX1 | 92.641 | 693 | 46 | 3 | 1 | 689 | 1 | 692 | 0.0 | 1305 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0061500 | Msa0222870 | 0.809321 | 2.004269e-50 | -8.615850e-47 |
| Msa0092410 | Msa0222870 | 0.832289 | 1.028848e-55 | -8.615850e-47 |
| Msa0102140 | Msa0222870 | 0.832518 | 9.030532e-56 | -8.615850e-47 |
| Msa0152560 | Msa0222870 | 0.825036 | 5.833761e-54 | -8.615850e-47 |
| Msa0220750 | Msa0222870 | 0.803102 | 4.092368e-49 | -8.615850e-47 |
| Msa0222870 | Msa0222980 | 0.902457 | 9.509304e-79 | -8.615850e-47 |
| Msa0222870 | Msa0236420 | 0.805328 | 1.407548e-49 | -8.615850e-47 |
| Msa0222870 | Msa0240270 | 0.837100 | 6.343455e-57 | -8.615850e-47 |
| Msa0222870 | Msa0264310 | 0.898666 | 4.243720e-77 | -8.615850e-47 |
| Msa0222870 | Msa0269560 | 0.835127 | 2.010588e-56 | -8.615850e-47 |
| Msa0222870 | Msa0271550 | 0.826487 | 2.640571e-54 | -8.615850e-47 |
| Msa0222870 | Msa0311470 | 0.802119 | 6.526502e-49 | -8.615850e-47 |
| Msa0222870 | Msa0319290 | 0.812930 | 3.308749e-51 | -8.615850e-47 |
| Msa0222870 | Msa0364790 | 0.819342 | 1.221316e-52 | -8.615850e-47 |
| Msa0222870 | Msa0371950 | 0.828736 | 7.617611e-55 | -8.615850e-47 |
| Msa0222870 | Msa0386010 | 0.806161 | 9.407494e-50 | -8.615850e-47 |
| Msa0222870 | Msa0397250 | 0.810515 | 1.109335e-50 | -8.615850e-47 |
| Msa0222870 | Msa0403490 | 0.817854 | 2.656622e-52 | -8.615850e-47 |
| Msa0222870 | Msa0422180 | 0.804769 | 1.842166e-49 | -8.615850e-47 |
| Msa0222870 | Msa0456770 | 0.800760 | 1.239093e-48 | -8.615850e-47 |
| Msa0222870 | Msa0457990 | 0.864798 | 9.380249e-65 | -8.615850e-47 |
| Msa0222870 | Msa0566350 | 0.802091 | 6.612095e-49 | -8.615850e-47 |
| Msa0222870 | Msa0566750 | 0.801510 | 8.703500e-49 | -8.615850e-47 |
| Msa0222870 | Msa0678220 | 0.805099 | 1.572168e-49 | -8.615850e-47 |
| Msa0222870 | Msa0697570 | 0.804393 | 2.207518e-49 | -8.615850e-47 |
| Msa0222870 | Msa0713380 | 0.826624 | 2.448877e-54 | -8.615850e-47 |
| Msa0222870 | Msa0714990 | 0.811448 | 6.966304e-51 | -8.615850e-47 |
| Msa0222870 | Msa0721340 | 0.815563 | 8.668965e-52 | -8.615850e-47 |
| Msa0222870 | Msa0757020 | 0.804223 | 2.394387e-49 | -8.615850e-47 |
| Msa0222870 | Msa0812950 | 0.837918 | 3.913375e-57 | -8.615850e-47 |
| Msa0222870 | Msa0823540 | 0.801792 | 7.618891e-49 | -8.615850e-47 |
| Msa0222870 | Msa0836650 | 0.820194 | 7.801114e-53 | -8.615850e-47 |
| Msa0222870 | Msa0863720 | 0.814126 | 1.805319e-51 | -8.615850e-47 |
| Msa0222870 | Msa0894710 | 0.818983 | 1.474070e-52 | -8.615850e-47 |
| Msa0222870 | Msa0898320 | 0.807890 | 4.052947e-50 | -8.615850e-47 |
| Msa0222870 | Msa0921420 | 0.808407 | 3.145044e-50 | -8.615850e-47 |
| Msa0222870 | Msa0972810 | 0.803004 | 4.287215e-49 | -8.615850e-47 |
| Msa0222870 | Msa0982780 | 0.802092 | 6.610124e-49 | -8.615850e-47 |
| Msa0222870 | Msa0994910 | 0.814272 | 1.676713e-51 | -8.615850e-47 |
| Msa0222870 | Msa1063400 | 0.825602 | 4.285291e-54 | -8.615850e-47 |
| Msa0222870 | Msa1063420 | 0.801954 | 7.055276e-49 | -8.615850e-47 |
| Msa0222870 | Msa1108710 | 0.801632 | 8.216032e-49 | -8.615850e-47 |
| Msa0222870 | Msa1143020 | 0.807424 | 5.089993e-50 | -8.615850e-47 |
| Msa0222870 | Msa1173490 | 0.802661 | 5.047667e-49 | -8.615850e-47 |
| Msa0222870 | Msa1209190 | 0.802695 | 4.964865e-49 | -8.615850e-47 |
| Msa0222870 | Msa1214170 | 0.854212 | 1.430129e-61 | -8.615850e-47 |
| Msa0222870 | Msa1221330 | 0.804965 | 1.677080e-49 | -8.615850e-47 |
| Msa0222870 | Msa1235390 | 0.822439 | 2.367950e-53 | -8.615850e-47 |
| Msa0222870 | Msa1236440 | 0.814120 | 1.810743e-51 | -8.615850e-47 |
| Msa0222870 | Msa1277670 | 0.809334 | 1.991838e-50 | -8.615850e-47 |
| Msa0222870 | Msa1291450 | 0.809189 | 2.139512e-50 | -8.615850e-47 |
| Msa0222870 | Msa1335230 | 0.820979 | 5.152295e-53 | -8.615850e-47 |
| Msa0222870 | Msa1338400 | 0.827816 | 1.269276e-54 | -8.615850e-47 |
| Msa0222870 | Msa1349450 | 0.800296 | 1.540642e-48 | -8.615850e-47 |
| Msa0222870 | Msa1360020 | 0.857349 | 1.734691e-62 | -8.615850e-47 |
| Msa0222870 | Msa1423820 | 0.813845 | 2.082207e-51 | -8.615850e-47 |
| Msa0222870 | Msa1424630 | 0.815266 | 1.009488e-51 | -8.615850e-47 |
| Msa0222870 | Msa1426710 | 0.806814 | 6.851692e-50 | -8.615850e-47 |
| Msa0222870 | Msa1430130 | 0.804471 | 2.126562e-49 | -8.615850e-47 |
| Msa0222870 | Msa1430550 | 0.831568 | 1.550403e-55 | -8.615850e-47 |
| Msa0222870 | Msa1460750 | 0.804083 | 2.561248e-49 | -8.615850e-47 |
| Msa0222870 | Msa1462360 | 0.806740 | 7.101880e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0222870 | MtrunA17_Chr2g0328111 | 92.641 | 693 | 46 | 3 | 1 | 689 | 1 | 692 | 0.0 | 1305 |
| Msa0222870 | MtrunA17_Chr1g0169831 | 40.361 | 166 | 98 | 1 | 525 | 689 | 708 | 873 | 2.07e-34 | 140 |
| Msa0222870 | MtrunA17_Chr4g0010021 | 34.637 | 179 | 97 | 4 | 510 | 688 | 390 | 548 | 1.59e-24 | 108 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0222870 | AT5G02390.1 | 29.599 | 598 | 323 | 23 | 118 | 679 | 289 | 824 | 9.73e-51 | 190 |
| Msa0222870 | AT5G02390.3 | 29.599 | 598 | 323 | 23 | 118 | 679 | 289 | 824 | 9.73e-51 | 190 |
| Msa0222870 | AT1G07620.2 | 26.695 | 708 | 365 | 27 | 1 | 687 | 1 | 575 | 2.95e-39 | 153 |
| Msa0222870 | AT1G07620.4 | 26.093 | 709 | 342 | 27 | 1 | 687 | 1 | 549 | 3.16e-37 | 147 |
| Msa0222870 | AT1G07620.3 | 26.093 | 709 | 342 | 27 | 1 | 687 | 1 | 549 | 3.16e-37 | 147 |
| Msa0222870 | AT1G07620.1 | 26.093 | 709 | 342 | 27 | 1 | 687 | 1 | 549 | 3.16e-37 | 147 |
| Msa0222870 | AT5G02390.2 | 26.667 | 510 | 277 | 22 | 118 | 592 | 289 | 736 | 6.05e-22 | 101 |
Find 110 sgRNAs with CRISPR-Local
Find 149 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTCTTTGACATATTTGAAAT+TGG | 0.199181 | 2_1:-72320395 | None:intergenic |
| ATGTTGATTAATTTGTAAAT+AGG | 0.210912 | 2_1:+72320999 | Msa0222870:three_prime_UTR |
| ACCTTGGAAGGCGCGGTTAA+AGG | 0.224919 | 2_1:-72319089 | None:intergenic |
| GGTCTAAGCAAACCGAAATT+TGG | 0.233160 | 2_1:+72319138 | Msa0222870:CDS |
| AGTGATTTATCAATCTTTAA+AGG | 0.241353 | 2_1:-72319875 | None:intergenic |
| CAGAAATTGATTATTTGTTA+TGG | 0.249750 | 2_1:+72318189 | Msa0222870:exon |
| ACTATCTTGTTAAAGAAGTA+TGG | 0.258917 | 2_1:+72320692 | Msa0222870:CDS |
| TTGTCTTGACAGCTAATTTC+AGG | 0.275591 | 2_1:-72320025 | None:intergenic |
| TTCTTCTAAAGCTGTGAATA+AGG | 0.278916 | 2_1:-72320494 | None:intergenic |
| AGAAATTGATTATTTGTTAT+GGG | 0.298961 | 2_1:+72318190 | Msa0222870:exon |
| TAGTTGAATGCAAAGGGTTT+TGG | 0.302998 | 2_1:-72320643 | None:intergenic |
| TAGAGTTGCTTAAAGAGTTT+TGG | 0.309502 | 2_1:+72321043 | Msa0222870:three_prime_UTR |
| TTAACAAGATAGTTCCCTTT+AGG | 0.319585 | 2_1:-72320682 | None:intergenic |
| GTCTACCGTGTATGGCATTT+GGG | 0.321199 | 2_1:-72320455 | None:intergenic |
| CTTGGGAAAGTGCCAAATTT+CGG | 0.322890 | 2_1:-72319150 | None:intergenic |
| GGTCTACCGTGTATGGCATT+TGG | 0.328254 | 2_1:-72320456 | None:intergenic |
| TTATGAAACGCCGAAGCTTT+CGG | 0.334227 | 2_1:+72319241 | Msa0222870:CDS |
| TATTCTTGATTATCATCGTT+GGG | 0.343497 | 2_1:+72318291 | Msa0222870:CDS |
| AAGCTTTCGGCGAGCGATCT+TGG | 0.344645 | 2_1:+72319254 | Msa0222870:CDS |
| CCACTTGATTCCATCCTTTG+TGG | 0.349946 | 2_1:-72319343 | None:intergenic |
| TAGGCTAGCTTCATGTTTGT+TGG | 0.375152 | 2_1:-72319561 | None:intergenic |
| AAAGCGAAATTGACAAAATC+AGG | 0.380909 | 2_1:+72319059 | Msa0222870:CDS |
| ATTGGCTGGTCTACCGTGTA+TGG | 0.382655 | 2_1:-72320463 | None:intergenic |
| AACTCAAACCAATGCCTAAA+GGG | 0.384062 | 2_1:+72320668 | Msa0222870:CDS |
| GTGAATAAGGAAGGTTTCAT+TGG | 0.396105 | 2_1:-72320481 | None:intergenic |
| GAGATGATGTTCTTCGCATT+AGG | 0.406169 | 2_1:-72319580 | None:intergenic |
| AATTGAAATGTCTCTGTTGA+GGG | 0.417690 | 2_1:-72318919 | None:intergenic |
| ATGCCTAATCTTGAGTCCTT+AGG | 0.420369 | 2_1:+72319761 | Msa0222870:CDS |
| AATCTTTAAACATACCTTGA+GGG | 0.448540 | 2_1:-72318700 | None:intergenic |
| AAATTCTCTTCTCATGATGT+TGG | 0.451920 | 2_1:+72320881 | Msa0222870:exon |
| AGATCGCTCGCCGAAAGCTT+CGG | 0.452317 | 2_1:-72319251 | None:intergenic |
| ATCATCGTTGGGGTGTCAAA+AGG | 0.453879 | 2_1:+72318302 | Msa0222870:CDS |
| AGATAGTTCCCTTTAGGCAT+TGG | 0.454693 | 2_1:-72320676 | None:intergenic |
| AATATCAAATGCTAAAGGTC+AGG | 0.458115 | 2_1:+72318839 | Msa0222870:CDS |
| ATATTCTTGATTATCATCGT+TGG | 0.463067 | 2_1:+72318290 | Msa0222870:CDS |
| CGAAATTTGGCACTTTCCCA+AGG | 0.470153 | 2_1:+72319151 | Msa0222870:CDS |
| CAGACATTAGATGATGTTGT+TGG | 0.474147 | 2_1:+72320757 | Msa0222870:CDS |
| AATCCTAAGGACTCAAGATT+AGG | 0.474891 | 2_1:-72319764 | None:intergenic |
| AGATCTCTTTCTCGTTATTG+TGG | 0.476200 | 2_1:-72319457 | None:intergenic |
| ATAAGGAAGGTTTCATTGGC+TGG | 0.476766 | 2_1:-72320477 | None:intergenic |
| TCCTAGTTCTTTATCTGCTG+TGG | 0.479016 | 2_1:+72319958 | Msa0222870:CDS |
| GTCAATTTCGCTTTGTTGTG+AGG | 0.479415 | 2_1:-72319050 | None:intergenic |
| AAAGTTGCTAGCTGGAACTC+AGG | 0.480623 | 2_1:+72319178 | Msa0222870:CDS |
| AGTTTGTAGTTGAATGCAAA+GGG | 0.481518 | 2_1:-72320649 | None:intergenic |
| GAAGGCTTTGAAGAAATACT+TGG | 0.482916 | 2_1:-72319308 | None:intergenic |
| AAACTCAAACCAATGCCTAA+AGG | 0.488700 | 2_1:+72320667 | Msa0222870:CDS |
| TGGTTGGATGAATCTTCAAC+AGG | 0.489385 | 2_1:+72320801 | Msa0222870:CDS |
| GCTAAAGGTCAGGCTAGTAG+TGG | 0.495455 | 2_1:+72318849 | Msa0222870:CDS |
| TCCTTTAACCGCGCCTTCCA+AGG | 0.498449 | 2_1:+72319088 | Msa0222870:CDS |
| TAAATTTGTTACCTTCTGCT+TGG | 0.498904 | 2_1:-72320057 | None:intergenic |
| ATTAGTTCAGAGGAATCTAC+AGG | 0.503053 | 2_1:+72318223 | Msa0222870:CDS |
| ACATTAGCTCTAGTACCTTC+CGG | 0.504712 | 2_1:+72319117 | Msa0222870:CDS |
| TCTAAAGCTGTGAATAAGGA+AGG | 0.504713 | 2_1:-72320490 | None:intergenic |
| TTGTGGCTTACTCCTTCAGA+AGG | 0.507237 | 2_1:-72319326 | None:intergenic |
| ATTTGTAAATAGGATTGTAC+TGG | 0.509013 | 2_1:+72321009 | Msa0222870:three_prime_UTR |
| TAATTGAAATGTCTCTGTTG+AGG | 0.510901 | 2_1:-72318920 | None:intergenic |
| AACAAATGAAGAAAATAATA+CGG | 0.513989 | 2_1:+72319811 | Msa0222870:CDS |
| AAATTTCGGTTTGCTTAGAC+CGG | 0.520967 | 2_1:-72319136 | None:intergenic |
| CAAATTCAAGAAGTTAATCA+AGG | 0.522924 | 2_1:+72318247 | Msa0222870:CDS |
| GAAGTTGATGAAACAGTTGA+AGG | 0.525274 | 2_1:+72319917 | Msa0222870:CDS |
| AGCTGTCAAGACAATACAAT+CGG | 0.528083 | 2_1:+72320034 | Msa0222870:CDS |
| AAGGAGTAAGCCACAAAGGA+TGG | 0.528298 | 2_1:+72319333 | Msa0222870:CDS |
| GATGAATCTTCAACAGGAAG+AGG | 0.528776 | 2_1:+72320807 | Msa0222870:CDS |
| GAAATTGATTATCACTTGAG+TGG | 0.531719 | 2_1:+72318155 | Msa0222870:five_prime_UTR |
| ATGATAAGATTCACAAGAGT+AGG | 0.532170 | 2_1:+72319705 | Msa0222870:CDS |
| ATTTCTTCAAAGCCTTCTGA+AGG | 0.533424 | 2_1:+72319314 | Msa0222870:CDS |
| TCATCGTTGGGGTGTCAAAA+GGG | 0.534999 | 2_1:+72318303 | Msa0222870:CDS |
| GCACTTCATCGGAAGAAAGA+TGG | 0.537156 | 2_1:+72318876 | Msa0222870:CDS |
| AGAGAAATATCAAATGCTAA+AGG | 0.539737 | 2_1:+72318834 | Msa0222870:CDS |
| AAGTTAATCAAGGATGTATG+TGG | 0.539941 | 2_1:+72318257 | Msa0222870:CDS |
| CTATCTTGTTAAAGAAGTAT+GGG | 0.540514 | 2_1:+72320693 | Msa0222870:CDS |
| TTCGGTTTGCTTAGACCGGA+AGG | 0.541362 | 2_1:-72319132 | None:intergenic |
| GAAGATAAAACATGCACTTG+TGG | 0.545595 | 2_1:+72319394 | Msa0222870:CDS |
| AAAACACTTGATTAGTTCAG+AGG | 0.547935 | 2_1:+72318213 | Msa0222870:CDS |
| TCCACAGCAGATAAAGAACT+AGG | 0.548583 | 2_1:-72319959 | None:intergenic |
| ATCATCTCTTAACGAATCGA+TGG | 0.553700 | 2_1:+72319595 | Msa0222870:CDS |
| TTTCTAAGAGATATAGACAT+TGG | 0.556008 | 2_1:+72319005 | Msa0222870:CDS |
| TCTAATGTCTGATCTAACTC+TGG | 0.557841 | 2_1:-72320745 | None:intergenic |
| GCACAAGCAAAGAGATCAAG+TGG | 0.566429 | 2_1:+72319645 | Msa0222870:CDS |
| ATTCTTGATTATCATCGTTG+GGG | 0.567532 | 2_1:+72318292 | Msa0222870:CDS |
| CTAAGAGATATAGACATTGG+TGG | 0.569025 | 2_1:+72319008 | Msa0222870:CDS |
| AGTTAATCAAGGATGTATGT+GGG | 0.578331 | 2_1:+72318258 | Msa0222870:CDS |
| AATACAATCGGCCAAGCAGA+AGG | 0.578706 | 2_1:+72320046 | Msa0222870:CDS |
| ATCTCACAAAGCTTAGATGT+TGG | 0.579095 | 2_1:+72319476 | Msa0222870:CDS |
| GAAATTTGGCACTTTCCCAA+GGG | 0.581947 | 2_1:+72319152 | Msa0222870:CDS |
| GAGTTTGTAGTTGAATGCAA+AGG | 0.582588 | 2_1:-72320650 | None:intergenic |
| GTGTGTAGCACTTGAACTTG+AGG | 0.590237 | 2_1:+72320831 | Msa0222870:CDS |
| TACAGATGCAGAAGCCCTCA+AGG | 0.591111 | 2_1:+72318686 | Msa0222870:CDS |
| ATTTGACGAAAAGAAGTGGT+TGG | 0.594040 | 2_1:+72320785 | Msa0222870:CDS |
| TGGTTATGCAGGACAAGGTG+TGG | 0.594929 | 2_1:+72318127 | None:intergenic |
| GATGAAACAGTTGAAGGGAG+TGG | 0.594980 | 2_1:+72319923 | Msa0222870:CDS |
| GTAGTGGGAATGCACTTCAT+CGG | 0.597185 | 2_1:+72318865 | Msa0222870:CDS |
| CATGACTACTAATCTTAGCA+AGG | 0.600526 | 2_1:+72319988 | Msa0222870:CDS |
| CTAAAGGTCAGGCTAGTAGT+GGG | 0.612454 | 2_1:+72318850 | Msa0222870:CDS |
| AAGTTGATGAAACAGTTGAA+GGG | 0.625255 | 2_1:+72319918 | Msa0222870:CDS |
| TCTTGGAATCGATAGTGTCA+TGG | 0.628298 | 2_1:+72319271 | Msa0222870:CDS |
| TCATCGGAAGAAAGATGGCA+AGG | 0.628410 | 2_1:+72318881 | Msa0222870:CDS |
| AAAGAGTAAGAGCTTGAGTG+AGG | 0.644516 | 2_1:+72319517 | Msa0222870:CDS |
| GTTAATCAAGGATGTATGTG+GGG | 0.647876 | 2_1:+72318259 | Msa0222870:CDS |
| ATCATGTAGAATGAATCCTA+AGG | 0.650965 | 2_1:-72319777 | None:intergenic |
| CGTGATTTGACGAAAAGAAG+TGG | 0.655367 | 2_1:+72320781 | Msa0222870:CDS |
| AATCATGGTTATGCAGGACA+AGG | 0.656311 | 2_1:+72318122 | None:intergenic |
| CCACAAAGGATGGAATCAAG+TGG | 0.658566 | 2_1:+72319343 | Msa0222870:CDS |
| TCTGAAGGAGTAAGCCACAA+AGG | 0.665084 | 2_1:+72319329 | Msa0222870:CDS |
| AAATTTGGCACTTTCCCAAG+GGG | 0.665909 | 2_1:+72319153 | Msa0222870:CDS |
| AATTTGGCACTTTCCCAAGG+GGG | 0.673506 | 2_1:+72319154 | Msa0222870:CDS |
| AAATTGCTTCTAGAAAACAT+AGG | 0.675542 | 2_1:-72319734 | None:intergenic |
| GCAGACCCAAATGCCATACA+CGG | 0.677347 | 2_1:+72320450 | Msa0222870:CDS |
| AAATGAAGAAAATAATACGG+TGG | 0.680803 | 2_1:+72319814 | Msa0222870:CDS |
| GACTACTAATCTTAGCAAGG+AGG | 0.711361 | 2_1:+72319991 | Msa0222870:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACATGATAAAAATATATATA+AGG | + | chr2_1:72318474-72318493 | Msa0222870:intron | 10.0% |
| !! | CATGATAAAAATATATATAA+GGG | + | chr2_1:72318475-72318494 | Msa0222870:intron | 10.0% |
| !! | ATGATAAAAATATATATAAG+GGG | + | chr2_1:72318476-72318495 | Msa0222870:intron | 10.0% |
| !!! | AATTCTTTATTTATTTATGA+CGG | - | chr2_1:72318747-72318766 | None:intergenic | 10.0% |
| !!! | AGAAATTGATTATTTGTTAT+GGG | + | chr2_1:72318190-72318209 | Msa0222870:exon | 15.0% |
| !!! | TTTTAATGATTATAAAGCAA+TGG | - | chr2_1:72318448-72318467 | None:intergenic | 15.0% |
| !!! | TTTAAATAATTCTAAGGTAT+AGG | - | chr2_1:72318572-72318591 | None:intergenic | 15.0% |
| !! | TTCTACTTTAAATAATTCTA+AGG | - | chr2_1:72318578-72318597 | None:intergenic | 15.0% |
| !!! | AGATTCATGATTATATTTTA+TGG | + | chr2_1:72318718-72318737 | Msa0222870:intron | 15.0% |
| !! | AACAAATGAAGAAAATAATA+CGG | + | chr2_1:72319811-72319830 | Msa0222870:CDS | 15.0% |
| !!! | ATCATTACTAATCTTTTTTT+TGG | + | chr2_1:72320243-72320262 | Msa0222870:intron | 15.0% |
| !!! | ATGTTGATTAATTTGTAAAT+AGG | + | chr2_1:72320999-72321018 | Msa0222870:three_prime_UTR | 15.0% |
| !!! | CAGAAATTGATTATTTGTTA+TGG | + | chr2_1:72318189-72318208 | Msa0222870:exon | 20.0% |
| !! | AGTGATTTATCAATCTTTAA+AGG | - | chr2_1:72319878-72319897 | None:intergenic | 20.0% |
| !! | GCTATATATATATATATACC+AGG | + | chr2_1:72320265-72320284 | Msa0222870:intron | 20.0% |
| !! | ATATATATATATACCAGGAA+AGG | + | chr2_1:72320270-72320289 | Msa0222870:intron | 20.0% |
| ! | CAAATTCAAGAAGTTAATCA+AGG | + | chr2_1:72318247-72318266 | Msa0222870:CDS | 25.0% |
| ! | ATATTCTTGATTATCATCGT+TGG | + | chr2_1:72318290-72318309 | Msa0222870:CDS | 25.0% |
| ! | TATTCTTGATTATCATCGTT+GGG | + | chr2_1:72318291-72318310 | Msa0222870:CDS | 25.0% |
| ! | ATAAAAGAAGAAACATAGTG+TGG | - | chr2_1:72318377-72318396 | None:intergenic | 25.0% |
| !! | TCTTTTTCTTATCTGCATAT+AGG | - | chr2_1:72318638-72318657 | None:intergenic | 25.0% |
| ! | AATCTTTAAACATACCTTGA+GGG | - | chr2_1:72318703-72318722 | None:intergenic | 25.0% |
| ! | AGAGAAATATCAAATGCTAA+AGG | + | chr2_1:72318834-72318853 | Msa0222870:CDS | 25.0% |
| !!! | CAAAAACAATGATGATGTTT+TGG | + | chr2_1:72318947-72318966 | Msa0222870:CDS | 25.0% |
| !! | TTTCTAAGAGATATAGACAT+TGG | + | chr2_1:72319005-72319024 | Msa0222870:CDS | 25.0% |
| !! | AAATTGCTTCTAGAAAACAT+AGG | - | chr2_1:72319737-72319756 | None:intergenic | 25.0% |
| ! | AAATGAAGAAAATAATACGG+TGG | + | chr2_1:72319814-72319833 | Msa0222870:CDS | 25.0% |
| !!! | ATCACTTGAACATTTTAAAG+AGG | + | chr2_1:72319892-72319911 | Msa0222870:CDS | 25.0% |
| !! | GTCTTTGACATATTTGAAAT+TGG | - | chr2_1:72320398-72320417 | None:intergenic | 25.0% |
| !! | CAAAGACATTCTTGAATTTT+CGG | + | chr2_1:72320411-72320430 | Msa0222870:CDS | 25.0% |
| !! | AAAGACATTCTTGAATTTTC+GGG | + | chr2_1:72320412-72320431 | Msa0222870:CDS | 25.0% |
| !!! | TCATCAACTTCTTTTTAACT+TGG | + | chr2_1:72320573-72320592 | Msa0222870:CDS | 25.0% |
| ! | ACTATCTTGTTAAAGAAGTA+TGG | + | chr2_1:72320692-72320711 | Msa0222870:CDS | 25.0% |
| !! | CTATCTTGTTAAAGAAGTAT+GGG | + | chr2_1:72320693-72320712 | Msa0222870:CDS | 25.0% |
| ! | ATTTGTAAATAGGATTGTAC+TGG | + | chr2_1:72321009-72321028 | Msa0222870:three_prime_UTR | 25.0% |
| GAAATTGATTATCACTTGAG+TGG | + | chr2_1:72318155-72318174 | Msa0222870:five_prime_UTR | 30.0% | |
| ! | AAAACACTTGATTAGTTCAG+AGG | + | chr2_1:72318213-72318232 | Msa0222870:CDS | 30.0% |
| AAGTTAATCAAGGATGTATG+TGG | + | chr2_1:72318257-72318276 | Msa0222870:CDS | 30.0% | |
| AGTTAATCAAGGATGTATGT+GGG | + | chr2_1:72318258-72318277 | Msa0222870:CDS | 30.0% | |
| ATTCTTGATTATCATCGTTG+GGG | + | chr2_1:72318292-72318311 | Msa0222870:CDS | 30.0% | |
| CAGCTGTTTATATACACAAA+AGG | - | chr2_1:72318527-72318546 | None:intergenic | 30.0% | |
| !!! | ATTTTGTTGGTCTTGCAAAA+TGG | - | chr2_1:72318661-72318680 | None:intergenic | 30.0% |
| ! | CATCTGTAACAACATTTTGT+TGG | - | chr2_1:72318674-72318693 | None:intergenic | 30.0% |
| GAATCTTTAAACATACCTTG+AGG | - | chr2_1:72318704-72318723 | None:intergenic | 30.0% | |
| AATATCAAATGCTAAAGGTC+AGG | + | chr2_1:72318839-72318858 | Msa0222870:CDS | 30.0% | |
| AATTGAAATGTCTCTGTTGA+GGG | - | chr2_1:72318922-72318941 | None:intergenic | 30.0% | |
| TAATTGAAATGTCTCTGTTG+AGG | - | chr2_1:72318923-72318942 | None:intergenic | 30.0% | |
| !! | AAACAATGATGATGTTTTGG+AGG | + | chr2_1:72318950-72318969 | Msa0222870:CDS | 30.0% |
| !!! | TGTTTTGGAGGTAATTAATG+TGG | + | chr2_1:72318962-72318981 | Msa0222870:CDS | 30.0% |
| AAAGCGAAATTGACAAAATC+AGG | + | chr2_1:72319059-72319078 | Msa0222870:CDS | 30.0% | |
| !!! | AAACTTGATCCAAGCTTTTT+TGG | - | chr2_1:72319206-72319225 | None:intergenic | 30.0% |
| ATGATAAGATTCACAAGAGT+AGG | + | chr2_1:72319705-72319724 | Msa0222870:CDS | 30.0% | |
| ATCATGTAGAATGAATCCTA+AGG | - | chr2_1:72319780-72319799 | None:intergenic | 30.0% | |
| !! | AAGTTGATGAAACAGTTGAA+GGG | + | chr2_1:72319918-72319937 | Msa0222870:CDS | 30.0% |
| !! | TAAATTTGTTACCTTCTGCT+TGG | - | chr2_1:72320060-72320079 | None:intergenic | 30.0% |
| ACTAACGTAACATTTCTTTG+AGG | + | chr2_1:72320096-72320115 | Msa0222870:intron | 30.0% | |
| !! | TTCTTCTAAAGCTGTGAATA+AGG | - | chr2_1:72320497-72320516 | None:intergenic | 30.0% |
| !!! | AAGGGTTTTGGAAAATAAGT+TGG | - | chr2_1:72320634-72320653 | None:intergenic | 30.0% |
| AGTTTGTAGTTGAATGCAAA+GGG | - | chr2_1:72320652-72320671 | None:intergenic | 30.0% | |
| TTAACAAGATAGTTCCCTTT+AGG | - | chr2_1:72320685-72320704 | None:intergenic | 30.0% | |
| AAATTCTCTTCTCATGATGT+TGG | + | chr2_1:72320881-72320900 | Msa0222870:exon | 30.0% | |
| !!! | ATGATTTTTTGAAGCAGCAT+AGG | + | chr2_1:72320970-72320989 | Msa0222870:three_prime_UTR | 30.0% |
| ATTAGTTCAGAGGAATCTAC+AGG | + | chr2_1:72318223-72318242 | Msa0222870:CDS | 35.0% | |
| GTTAATCAAGGATGTATGTG+GGG | + | chr2_1:72318259-72318278 | Msa0222870:CDS | 35.0% | |
| GGTATGAAATTGCTTACATC+TGG | - | chr2_1:72318356-72318375 | None:intergenic | 35.0% | |
| ACAAAAGGTTCTTGATGAGA+TGG | - | chr2_1:72318512-72318531 | None:intergenic | 35.0% | |
| CTAAGAGATATAGACATTGG+TGG | + | chr2_1:72319008-72319027 | Msa0222870:CDS | 35.0% | |
| ! | CTAATGTTTTTCACCTTGGA+AGG | - | chr2_1:72319104-72319123 | None:intergenic | 35.0% |
| ! | AGAGCTAATGTTTTTCACCT+TGG | - | chr2_1:72319108-72319127 | None:intergenic | 35.0% |
| ! | AAATTTCGGTTTGCTTAGAC+CGG | - | chr2_1:72319139-72319158 | None:intergenic | 35.0% |
| !! | GAAGGCTTTGAAGAAATACT+TGG | - | chr2_1:72319311-72319330 | None:intergenic | 35.0% |
| ATTTCTTCAAAGCCTTCTGA+AGG | + | chr2_1:72319314-72319333 | Msa0222870:CDS | 35.0% | |
| GAAGATAAAACATGCACTTG+TGG | + | chr2_1:72319394-72319413 | Msa0222870:CDS | 35.0% | |
| CTTGTGGAACTCAAAAAAAG+TGG | + | chr2_1:72319410-72319429 | Msa0222870:CDS | 35.0% | |
| AGATCTCTTTCTCGTTATTG+TGG | - | chr2_1:72319460-72319479 | None:intergenic | 35.0% | |
| ATCTCACAAAGCTTAGATGT+TGG | + | chr2_1:72319476-72319495 | Msa0222870:CDS | 35.0% | |
| ATCATCTCTTAACGAATCGA+TGG | + | chr2_1:72319595-72319614 | Msa0222870:CDS | 35.0% | |
| AATCCTAAGGACTCAAGATT+AGG | - | chr2_1:72319767-72319786 | None:intergenic | 35.0% | |
| !! | GAAGTTGATGAAACAGTTGA+AGG | + | chr2_1:72319917-72319936 | Msa0222870:CDS | 35.0% |
| CATGACTACTAATCTTAGCA+AGG | + | chr2_1:72319988-72320007 | Msa0222870:CDS | 35.0% | |
| TTGTCTTGACAGCTAATTTC+AGG | - | chr2_1:72320028-72320047 | None:intergenic | 35.0% | |
| AGCTGTCAAGACAATACAAT+CGG | + | chr2_1:72320034-72320053 | Msa0222870:CDS | 35.0% | |
| !!! | TCTTGAATTTTCGGGTTTCA+TGG | + | chr2_1:72320420-72320439 | Msa0222870:CDS | 35.0% |
| !!! | CTTGAATTTTCGGGTTTCAT+GGG | + | chr2_1:72320421-72320440 | Msa0222870:CDS | 35.0% |
| GTGAATAAGGAAGGTTTCAT+TGG | - | chr2_1:72320484-72320503 | None:intergenic | 35.0% | |
| ! | TCTAAAGCTGTGAATAAGGA+AGG | - | chr2_1:72320493-72320512 | None:intergenic | 35.0% |
| ! | TAGTTGAATGCAAAGGGTTT+TGG | - | chr2_1:72320646-72320665 | None:intergenic | 35.0% |
| GAGTTTGTAGTTGAATGCAA+AGG | - | chr2_1:72320653-72320672 | None:intergenic | 35.0% | |
| AAACTCAAACCAATGCCTAA+AGG | + | chr2_1:72320667-72320686 | Msa0222870:CDS | 35.0% | |
| AACTCAAACCAATGCCTAAA+GGG | + | chr2_1:72320668-72320687 | Msa0222870:CDS | 35.0% | |
| TCTAATGTCTGATCTAACTC+TGG | - | chr2_1:72320748-72320767 | None:intergenic | 35.0% | |
| CAGACATTAGATGATGTTGT+TGG | + | chr2_1:72320757-72320776 | Msa0222870:CDS | 35.0% | |
| ATTTGACGAAAAGAAGTGGT+TGG | + | chr2_1:72320785-72320804 | Msa0222870:CDS | 35.0% | |
| ! | GTCAATTTCGCTTTGTTGTG+AGG | - | chr2_1:72319053-72319072 | None:intergenic | 40.0% |
| !! | ACATTAGCTCTAGTACCTTC+CGG | + | chr2_1:72319117-72319136 | Msa0222870:CDS | 40.0% |
| GGTCTAAGCAAACCGAAATT+TGG | + | chr2_1:72319138-72319157 | Msa0222870:CDS | 40.0% | |
| !! | CTTGGGAAAGTGCCAAATTT+CGG | - | chr2_1:72319153-72319172 | None:intergenic | 40.0% |
| GAAATTTGGCACTTTCCCAA+GGG | + | chr2_1:72319152-72319171 | Msa0222870:CDS | 40.0% | |
| AAATTTGGCACTTTCCCAAG+GGG | + | chr2_1:72319153-72319172 | Msa0222870:CDS | 40.0% | |
| TTATGAAACGCCGAAGCTTT+CGG | + | chr2_1:72319241-72319260 | Msa0222870:CDS | 40.0% | |
| TCTTGGAATCGATAGTGTCA+TGG | + | chr2_1:72319271-72319290 | Msa0222870:CDS | 40.0% | |
| AAAGAGTAAGAGCTTGAGTG+AGG | + | chr2_1:72319517-72319536 | Msa0222870:CDS | 40.0% | |
| !! | TAGGCTAGCTTCATGTTTGT+TGG | - | chr2_1:72319564-72319583 | None:intergenic | 40.0% |
| GAGATGATGTTCTTCGCATT+AGG | - | chr2_1:72319583-72319602 | None:intergenic | 40.0% | |
| ATGCCTAATCTTGAGTCCTT+AGG | + | chr2_1:72319761-72319780 | Msa0222870:CDS | 40.0% | |
| ! | TCCTAGTTCTTTATCTGCTG+TGG | + | chr2_1:72319958-72319977 | Msa0222870:CDS | 40.0% |
| TCCACAGCAGATAAAGAACT+AGG | - | chr2_1:72319962-72319981 | None:intergenic | 40.0% | |
| GACTACTAATCTTAGCAAGG+AGG | + | chr2_1:72319991-72320010 | Msa0222870:CDS | 40.0% | |
| ATAAGGAAGGTTTCATTGGC+TGG | - | chr2_1:72320480-72320499 | None:intergenic | 40.0% | |
| AGATAGTTCCCTTTAGGCAT+TGG | - | chr2_1:72320679-72320698 | None:intergenic | 40.0% | |
| CGTGATTTGACGAAAAGAAG+TGG | + | chr2_1:72320781-72320800 | Msa0222870:CDS | 40.0% | |
| TGGTTGGATGAATCTTCAAC+AGG | + | chr2_1:72320801-72320820 | Msa0222870:CDS | 40.0% | |
| GATGAATCTTCAACAGGAAG+AGG | + | chr2_1:72320807-72320826 | Msa0222870:CDS | 40.0% | |
| ! | ATCATCGTTGGGGTGTCAAA+AGG | + | chr2_1:72318302-72318321 | Msa0222870:CDS | 45.0% |
| ! | TCATCGTTGGGGTGTCAAAA+GGG | + | chr2_1:72318303-72318322 | Msa0222870:CDS | 45.0% |
| CTAAAGGTCAGGCTAGTAGT+GGG | + | chr2_1:72318850-72318869 | Msa0222870:CDS | 45.0% | |
| ! | GTAGTGGGAATGCACTTCAT+CGG | + | chr2_1:72318865-72318884 | Msa0222870:CDS | 45.0% |
| GCACTTCATCGGAAGAAAGA+TGG | + | chr2_1:72318876-72318895 | Msa0222870:CDS | 45.0% | |
| TCATCGGAAGAAAGATGGCA+AGG | + | chr2_1:72318881-72318900 | Msa0222870:CDS | 45.0% | |
| CGAAATTTGGCACTTTCCCA+AGG | + | chr2_1:72319151-72319170 | Msa0222870:CDS | 45.0% | |
| AATTTGGCACTTTCCCAAGG+GGG | + | chr2_1:72319154-72319173 | Msa0222870:CDS | 45.0% | |
| AAAGTTGCTAGCTGGAACTC+AGG | + | chr2_1:72319178-72319197 | Msa0222870:CDS | 45.0% | |
| ACTCAGGCTCCAAAAAAGCT+TGG | + | chr2_1:72319194-72319213 | Msa0222870:CDS | 45.0% | |
| TTGTGGCTTACTCCTTCAGA+AGG | - | chr2_1:72319329-72319348 | None:intergenic | 45.0% | |
| TCTGAAGGAGTAAGCCACAA+AGG | + | chr2_1:72319329-72319348 | Msa0222870:CDS | 45.0% | |
| AAGGAGTAAGCCACAAAGGA+TGG | + | chr2_1:72319333-72319352 | Msa0222870:CDS | 45.0% | |
| CCACTTGATTCCATCCTTTG+TGG | - | chr2_1:72319346-72319365 | None:intergenic | 45.0% | |
| CCACAAAGGATGGAATCAAG+TGG | + | chr2_1:72319343-72319362 | Msa0222870:CDS | 45.0% | |
| GCACAAGCAAAGAGATCAAG+TGG | + | chr2_1:72319645-72319664 | Msa0222870:CDS | 45.0% | |
| GATGAAACAGTTGAAGGGAG+TGG | + | chr2_1:72319923-72319942 | Msa0222870:CDS | 45.0% | |
| AATACAATCGGCCAAGCAGA+AGG | + | chr2_1:72320046-72320065 | Msa0222870:CDS | 45.0% | |
| GTCTACCGTGTATGGCATTT+GGG | - | chr2_1:72320458-72320477 | None:intergenic | 45.0% | |
| GTGTGTAGCACTTGAACTTG+AGG | + | chr2_1:72320831-72320850 | Msa0222870:CDS | 45.0% | |
| !! | AATATATAAATATAAATATC+AGG | + | chr2_1:72318800-72318819 | Msa0222870:intron | 5.0% |
| TACAGATGCAGAAGCCCTCA+AGG | + | chr2_1:72318686-72318705 | Msa0222870:CDS | 50.0% | |
| GCTAAAGGTCAGGCTAGTAG+TGG | + | chr2_1:72318849-72318868 | Msa0222870:CDS | 50.0% | |
| ! | GTTTTTCACCTTGGAAGGCG+CGG | - | chr2_1:72319099-72319118 | None:intergenic | 50.0% |
| ! | TTCGGTTTGCTTAGACCGGA+AGG | - | chr2_1:72319135-72319154 | None:intergenic | 50.0% |
| ! | GCTAGCAACTTTTCCCCCTT+GGG | - | chr2_1:72319170-72319189 | None:intergenic | 50.0% |
| ! | AGCTAGCAACTTTTCCCCCT+TGG | - | chr2_1:72319171-72319190 | None:intergenic | 50.0% |
| AAGGGGGAAAAGTTGCTAGC+TGG | + | chr2_1:72319170-72319189 | Msa0222870:CDS | 50.0% | |
| CGCGTATTCGATTCCTTTCC+TGG | - | chr2_1:72320286-72320305 | None:intergenic | 50.0% | |
| GCAGACCCAAATGCCATACA+CGG | + | chr2_1:72320450-72320469 | Msa0222870:CDS | 50.0% | |
| GGTCTACCGTGTATGGCATT+TGG | - | chr2_1:72320459-72320478 | None:intergenic | 50.0% | |
| !! | ATTGGCTGGTCTACCGTGTA+TGG | - | chr2_1:72320466-72320485 | None:intergenic | 50.0% |
| TCCTTTAACCGCGCCTTCCA+AGG | + | chr2_1:72319088-72319107 | Msa0222870:CDS | 55.0% | |
| ! | ACCTTGGAAGGCGCGGTTAA+AGG | - | chr2_1:72319092-72319111 | None:intergenic | 55.0% |
| AGATCGCTCGCCGAAAGCTT+CGG | - | chr2_1:72319254-72319273 | None:intergenic | 55.0% | |
| AAGCTTTCGGCGAGCGATCT+TGG | + | chr2_1:72319254-72319273 | Msa0222870:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 72318137 | 72321062 | 72318137 | ID=Msa0222870;Name=Msa0222870 |
| chr2_1 | mRNA | 72318137 | 72321062 | 72318137 | ID=Msa0222870-mRNA-1;Parent=Msa0222870;Name=Msa0222870-mRNA-1;_AED=0.03;_eAED=0.03;_QI=71|1|1|1|1|1|4|165|689 |
| chr2_1 | exon | 72318137 | 72318358 | 72318137 | ID=Msa0222870-mRNA-1:exon:20892;Parent=Msa0222870-mRNA-1 |
| chr2_1 | exon | 72318646 | 72318707 | 72318646 | ID=Msa0222870-mRNA-1:exon:20893;Parent=Msa0222870-mRNA-1 |
| chr2_1 | exon | 72318822 | 72320067 | 72318822 | ID=Msa0222870-mRNA-1:exon:20894;Parent=Msa0222870-mRNA-1 |
| chr2_1 | exon | 72320287 | 72321062 | 72320287 | ID=Msa0222870-mRNA-1:exon:20895;Parent=Msa0222870-mRNA-1 |
| chr2_1 | five_prime_UTR | 72318137 | 72318207 | 72318137 | ID=Msa0222870-mRNA-1:five_prime_utr;Parent=Msa0222870-mRNA-1 |
| chr2_1 | CDS | 72318208 | 72318358 | 72318208 | ID=Msa0222870-mRNA-1:cds;Parent=Msa0222870-mRNA-1 |
| chr2_1 | CDS | 72318646 | 72318707 | 72318646 | ID=Msa0222870-mRNA-1:cds;Parent=Msa0222870-mRNA-1 |
| chr2_1 | CDS | 72318822 | 72320067 | 72318822 | ID=Msa0222870-mRNA-1:cds;Parent=Msa0222870-mRNA-1 |
| chr2_1 | CDS | 72320287 | 72320897 | 72320287 | ID=Msa0222870-mRNA-1:cds;Parent=Msa0222870-mRNA-1 |
| chr2_1 | three_prime_UTR | 72320898 | 72321062 | 72320898 | ID=Msa0222870-mRNA-1:three_prime_utr;Parent=Msa0222870-mRNA-1 |
| Gene Sequence |
| Protein sequence |
