AlfalfaGEDB | Msa0830420

M. sativa cultivar zhongmu-4 / Msa0830420

KEGG: -
GO: GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009719 GO:0009725 GO:0009739 GO:0009889 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901700 GO:1903506 GO:2000112 GO:2001141
PFAM: PF03514.17

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0830420	XP_003610972.1	99.168	481	4	0	1	481	1	481	0.0	988

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0830420	sp\|Q9LPR8\|SCL3_ARATH	65.914	487	155	7	1	481	1	482	0.0	650

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0830420	G7K9A5	99.168	481	4	0	1	481	1	481	0.0	988

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TFs/TRs:

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Gene ID	Type	Classification
Msa0830420	TF	GRAS

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0001790	Msa0830420	0.825711	4.039434e-54	-8.615850e-47
Msa0004880	Msa0830420	0.801484	8.810214e-49	-8.615850e-47
Msa0012040	Msa0830420	0.809629	1.721886e-50	-8.615850e-47
Msa0036140	Msa0830420	0.855831	4.843632e-62	-8.615850e-47
Msa0043980	Msa0830420	0.804729	1.878284e-49	-8.615850e-47
Msa0048000	Msa0830420	0.813207	2.876672e-51	-8.615850e-47
Msa0077450	Msa0830420	0.814371	1.594157e-51	-8.615850e-47
Msa0078060	Msa0830420	0.801861	7.372998e-49	-8.615850e-47
Msa0084080	Msa0830420	0.839256	1.766924e-57	-8.615850e-47
Msa0086650	Msa0830420	0.803167	3.966513e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0830420	MtrunA17_Chr5g0396491	99.168	481	4	0	1	481	1	481	0.0	988
Msa0830420	MtrunA17_Chr4g0038851	75.783	479	108	6	4	481	1	472	0.0	741
Msa0830420	MtrunA17_Chr3g0085681	54.139	447	193	5	34	480	4	438	4.38e-170	486
Msa0830420	MtrunA17_Chr3g0085361	55.056	356	148	5	125	480	9	352	5.06e-134	391
Msa0830420	MtrunA17_Chr7g0224271	34.658	453	209	7	45	478	289	673	4.84e-83	270
Msa0830420	MtrunA17_Chr8g0357601	30.682	440	235	10	49	479	175	553	3.18e-60	207
Msa0830420	MtrunA17_Chr5g0447691	30.254	433	233	8	53	478	174	544	1.82e-59	204
Msa0830420	MtrunA17_Chr4g0057291	27.790	439	245	8	49	477	285	661	2.10e-56	199
Msa0830420	MtrunA17_Chr1g0159461	28.605	430	240	7	55	478	224	592	7.84e-54	190
Msa0830420	MtrunA17_Chr3g0125811	28.302	424	249	6	55	478	202	570	4.35e-52	185

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0830420	AT1G50420.1	65.914	487	155	7	1	481	1	482	0.0	650
Msa0830420	AT3G54220.1	33.484	442	217	10	45	480	282	652	2.99e-62	214
Msa0830420	AT1G50600.3	29.476	458	251	10	31	478	131	526	5.67e-55	192
Msa0830420	AT1G50600.2	29.476	458	251	10	31	478	206	601	1.76e-54	192
Msa0830420	AT1G50600.1	29.476	458	251	10	31	478	202	597	1.94e-54	192
Msa0830420	AT1G21450.1	29.002	431	238	5	55	478	224	593	4.71e-54	191
Msa0830420	AT4G17230.1	26.174	447	261	7	39	478	141	525	2.78e-46	169
Msa0830420	AT4G17230.2	26.174	447	261	7	39	478	141	525	2.78e-46	169
Msa0830420	AT1G07520.2	24.099	444	268	6	45	477	143	528	9.31e-44	162
Msa0830420	AT1G07520.4	24.099	444	268	6	45	477	143	528	9.31e-44	162

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Find 92 sgRNAs with CRISPR-Local

Find 214 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGAGCAATCCATTGTGC+AGG	0.535750	5_4:+3488634	None:intergenic
AACATACCATAATAGCTTAA+AGG	0.277960	5_4:+3487854	None:intergenic
AACATCCCTAGAGAGATTAA+AGG	0.354098	5_4:-3488005	Msa0830420:CDS
AAGAACATAATTGCTTGTGA+AGG	0.580873	5_4:-3487953	Msa0830420:CDS
AAGCTATTATGGTATGTTGC+AGG	0.357915	5_4:-3487849	Msa0830420:CDS
AAGGTTGAGAAGATGCTGTT+TGG	0.498109	5_4:-3487986	Msa0830420:CDS
AATAATTCTTGTGGAATTTA+AGG	0.089377	5_4:+3488804	None:intergenic
AATCACCTAATGATGTGTTT+TGG	0.364016	5_4:+3488278	None:intergenic
AATCTATGTTACAAGAAGAA+GGG	0.598643	5_4:-3489143	Msa0830420:CDS
AATGTGCCTTTAAGCTATTA+TGG	0.377946	5_4:-3487860	Msa0830420:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GAATCTATGTTACAAGAAGA+AGG	-	chr5_4:3487727-3487746	Msa0830420:CDS	30.0%
ATCATGGAAAATAACTGTAG+AGG	+	chr5_4:3487775-3487794	None:intergenic	30.0%
TAGTAGAGAATTGAAATCTG+AGG	-	chr5_4:3487843-3487862	Msa0830420:CDS	30.0%
AGAATTGAAATCTGAGGAAA+GGG	-	chr5_4:3487849-3487868	Msa0830420:CDS	30.0%
TTGCACAAGTGATTAACAAA+TGG	+	chr5_4:3487888-3487907	None:intergenic	30.0%
CTGATAGGATACTTAAAACT+TGG	-	chr5_4:3488028-3488047	Msa0830420:CDS	30.0%
TCAAGCTATTGTTGAATCTA+TGG	-	chr5_4:3488170-3488189	Msa0830420:CDS	30.0%
ATGAACCAAAACACATCATT+AGG	-	chr5_4:3488588-3488607	Msa0830420:CDS	30.0%
CAATGCTGCATAAGAATATA+GGG	+	chr5_4:3488817-3488836	None:intergenic	30.0%
ACAATGCTGCATAAGAATAT+AGG	+	chr5_4:3488818-3488837	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_4	gene	3487724	3489169	3487724	ID=Msa0830420;Name=Msa0830420
chr5_4	mRNA	3487724	3489169	3487724	ID=Msa0830420-mRNA-1;Parent=Msa0830420;Name=Msa0830420-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|481
chr5_4	exon	3487724	3489169	3487724	ID=Msa0830420-mRNA-1:exon:1368;Parent=Msa0830420-mRNA-1
chr5_4	CDS	3487724	3489169	3487724	ID=Msa0830420-mRNA-1:cds;Parent=Msa0830420-mRNA-1

Gene Sequence

>Msa0830420

ATGGAATCTATGTTACAAGAAGAAGGGTCTTCATCAGTAACTTGTTCACCTCTACAGTTATTTTCCATGATGTCAGTTTCACCTAGCATAGGAGGAATAGGATCACCTTATCCATGGCTTAGTAGAGAATTGAAATCTGAGGAAAGGGGTTTGTATTTGATCCATTTGTTAATCACTTGTGCAAATCATGTAGCTTCTGGTAGTCTTGAAAGTGCAAACACAACACTTGAACAGATTTCACAGCTTGCAACTCCTGATGGAGACACTATGCAGAGAATTGCTGCTTATTTCACTGAAGCACTTGCTGATAGGATACTTAAAACTTGGCCTGGACTCCATAGAGCCTTAAATTCCACAAGAATTATTATGCTTTCTGAAGAAATTATGGTTCAGAAGTTTTTCTTTGAGCTTTTCCCTTTCTTGAAGGTGGCATATATTTTGACAAATCAAGCTATTGTTGAATCTATGGAAGGTGAGAAAATGGTTCATATTATTGATCTTAATGCTGCTGAACCTGCACAATGGATTGCTCTTTTACAAGTTTTGAGTGCAAGACCTGAAGGTCCTCCTCATTTGAGAATCACAGGGATTCATCAGCAGAAAGAGGTTTTGGAGCAAATGGGCCATAAGCTTTCTGAAGAAGCTGAGAAATTAGATATACCATTCCAATTCAACCCTGTTCTTAGCAAGCTAGAAAATCTTGATTTCGACAAACTTCGTGTGAAAACCGGCGAGGCGCTTGCAATTAGTTCTATTCTGCAGTTACATTCCCTTTTGGCCTTGGATGATGAATCATCCTCAAGGAGAAAAACTCCTATTATGTCAAGAAACTCAAATGGACTTCACCTGCAAAAAGCCATGTTTATGAACCAAAACACATCATTAGGTGATTTACTTGAAAAAGATATGGTTAATGGCTATAGTCCAAGTCCCGATTCAACATCATCATCGTCGCCAGCATCTTCATCTGCTTCAATGAATGTGGAGAGTTTTCTCAATGCTTTATGGAGTTTGTCACCAAAAGTCATGGTTGTAACCGAACAGGACTCGAATCACAACGGTTCAACATTGATGGAGAGGCTGCTTGAAGCCCTATATTCTTATGCAGCATTGTTTGATTGTTTGGAGTCAACTGTATCAAGAACATCCCTAGAGAGATTAAAGGTTGAGAAGATGCTGTTTGGTGAGGAAATCAAGAACATAATTGCTTGTGAAGGAGCTGAAAGAAAGGAAAGACATGAAAAACTTGATAAATGGTTTATGAGACTTGATTCGTGTGGATTTGGTAATGTGCCTTTAAGCTATTATGGTATGTTGCAGGCAAGAAGGTTTCTACAGAGTTATGGTTGTGAGGGATATAGAATGAGAGAAGAAAATGGTTGTGTAGTAACTTGCTGGCAAGATAGGTCTTTGTTTTCAACAACAGCTTGGAGAGCTAGGAAGTAA

Protein sequence

>Msa0830420

MESMLQEEGSSSVTCSPLQLFSMMSVSPSIGGIGSPYPWLSRELKSEERGLYLIHLLITCANHVASGSLESANTTLEQISQLATPDGDTMQRIAAYFTEALADRILKTWPGLHRALNSTRIIMLSEEIMVQKFFFELFPFLKVAYILTNQAIVESMEGEKMVHIIDLNAAEPAQWIALLQVLSARPEGPPHLRITGIHQQKEVLEQMGHKLSEEAEKLDIPFQFNPVLSKLENLDFDKLRVKTGEALAISSILQLHSLLALDDESSSRRKTPIMSRNSNGLHLQKAMFMNQNTSLGDLLEKDMVNGYSPSPDSTSSSSPASSSASMNVESFLNALWSLSPKVMVVTEQDSNHNGSTLMERLLEALYSYAALFDCLESTVSRTSLERLKVEKMLFGEEIKNIIACEGAERKERHEKLDKWFMRLDSCGFGNVPLSYYGMLQARRFLQSYGCEGYRMREENGCVVTCWQDRSLFSTTAWRARK*