Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1386110 | XP_003625805.1 | 98.776 | 245 | 3 | 0 | 1 | 245 | 1 | 245 | 1.22e-173 | 488 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1386110 | sp|Q8N8F6|YIPF7_HUMAN | 35.227 | 176 | 110 | 3 | 71 | 245 | 108 | 280 | 6.29e-31 | 118 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1386110 | G7L626 | 98.776 | 245 | 3 | 0 | 1 | 245 | 1 | 245 | 5.83e-174 | 488 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0027540 | Msa1386110 | -0.801978 | 6.976021e-49 | -8.615850e-47 |
| Msa0032840 | Msa1386110 | 0.827754 | 1.313600e-54 | -8.615850e-47 |
| Msa0046660 | Msa1386110 | 0.831807 | 1.353831e-55 | -8.615850e-47 |
| Msa0049650 | Msa1386110 | 0.809241 | 2.085123e-50 | -8.615850e-47 |
| Msa0075310 | Msa1386110 | -0.808476 | 3.040317e-50 | -8.615850e-47 |
| Msa0091770 | Msa1386110 | -0.802280 | 6.047677e-49 | -8.615850e-47 |
| Msa0095380 | Msa1386110 | -0.826977 | 2.017432e-54 | -8.615850e-47 |
| Msa0114540 | Msa1386110 | 0.809928 | 1.484857e-50 | -8.615850e-47 |
| Msa1358870 | Msa1386110 | 0.810177 | 1.312104e-50 | -8.615850e-47 |
| Msa1367080 | Msa1386110 | -0.800464 | 1.423949e-48 | -8.615850e-47 |
| Msa1386110 | Msa1419800 | 0.928076 | 4.809183e-92 | -8.615850e-47 |
| Msa1386110 | Msa1427660 | 0.998395 | 7.491932e-264 | -8.615850e-47 |
| Msa0618010 | Msa1386110 | -0.814592 | 1.424379e-51 | -8.615850e-47 |
| Msa0625530 | Msa1386110 | 0.813559 | 2.407702e-51 | -8.615850e-47 |
| Msa0627910 | Msa1386110 | -0.812310 | 4.520677e-51 | -8.615850e-47 |
| Msa0629370 | Msa1386110 | -0.803617 | 3.200595e-49 | -8.615850e-47 |
| Msa0638280 | Msa1386110 | -0.828911 | 6.910903e-55 | -8.615850e-47 |
| Msa0638320 | Msa1386110 | -0.825576 | 4.348635e-54 | -8.615850e-47 |
| Msa0642650 | Msa1386110 | -0.811047 | 8.512655e-51 | -8.615850e-47 |
| Msa0669850 | Msa1386110 | -0.819490 | 1.130301e-52 | -8.615850e-47 |
| Msa0672120 | Msa1386110 | -0.809032 | 2.311657e-50 | -8.615850e-47 |
| Msa0677270 | Msa1386110 | -0.826763 | 2.269131e-54 | -8.615850e-47 |
| Msa0717920 | Msa1386110 | 0.815767 | 7.810813e-52 | -8.615850e-47 |
| Msa0725480 | Msa1386110 | 0.835109 | 2.031264e-56 | -8.615850e-47 |
| Msa0756630 | Msa1386110 | 0.803057 | 4.179286e-49 | -8.615850e-47 |
| Msa0766100 | Msa1386110 | 0.821269 | 4.416370e-53 | -8.615850e-47 |
| Msa0774900 | Msa1386110 | 0.802629 | 5.123212e-49 | -8.615850e-47 |
| Msa0813320 | Msa1386110 | 0.812515 | 4.078959e-51 | -8.615850e-47 |
| Msa0143140 | Msa1386110 | 0.934347 | 4.648679e-96 | -8.615850e-47 |
| Msa0168100 | Msa1386110 | -0.800224 | 1.593527e-48 | -8.615850e-47 |
| Msa0172960 | Msa1386110 | 0.818369 | 2.032322e-52 | -8.615850e-47 |
| Msa0182930 | Msa1386110 | -0.800842 | 1.192078e-48 | -8.615850e-47 |
| Msa0208630 | Msa1386110 | -0.813198 | 2.889520e-51 | -8.615850e-47 |
| Msa0228340 | Msa1386110 | 0.801059 | 1.076611e-48 | -8.615850e-47 |
| Msa0230550 | Msa1386110 | 0.817969 | 2.502156e-52 | -8.615850e-47 |
| Msa0238070 | Msa1386110 | 0.831714 | 1.427427e-55 | -8.615850e-47 |
| Msa1237030 | Msa1386110 | -0.805951 | 1.041830e-49 | -8.615850e-47 |
| Msa1246740 | Msa1386110 | -0.809476 | 1.857047e-50 | -8.615850e-47 |
| Msa1253930 | Msa1386110 | 0.801523 | 8.648172e-49 | -8.615850e-47 |
| Msa1264020 | Msa1386110 | -0.806133 | 9.536551e-50 | -8.615850e-47 |
| Msa1265960 | Msa1386110 | -0.802443 | 5.597876e-49 | -8.615850e-47 |
| Msa1280130 | Msa1386110 | -0.810232 | 1.276920e-50 | -8.615850e-47 |
| Msa1284520 | Msa1386110 | -0.803402 | 3.547150e-49 | -8.615850e-47 |
| Msa1307660 | Msa1386110 | 0.804952 | 1.687546e-49 | -8.615850e-47 |
| Msa0376510 | Msa1386110 | -0.816189 | 6.286338e-52 | -8.615850e-47 |
| Msa0380040 | Msa1386110 | -0.802078 | 6.655096e-49 | -8.615850e-47 |
| Msa0398640 | Msa1386110 | -0.812317 | 4.505362e-51 | -8.615850e-47 |
| Msa0414950 | Msa1386110 | 0.837510 | 4.981928e-57 | -8.615850e-47 |
| Msa0425050 | Msa1386110 | -0.811368 | 7.251064e-51 | -8.615850e-47 |
| Msa0429290 | Msa1386110 | -0.813668 | 2.277677e-51 | -8.615850e-47 |
| Msa0459770 | Msa1386110 | 0.822740 | 2.014857e-53 | -8.615850e-47 |
| Msa0463590 | Msa1386110 | 0.803799 | 2.933431e-49 | -8.615850e-47 |
| Msa0475580 | Msa1386110 | -0.803594 | 3.235816e-49 | -8.615850e-47 |
| Msa1004900 | Msa1386110 | 0.806983 | 6.310016e-50 | -8.615850e-47 |
| Msa1044340 | Msa1386110 | -0.808632 | 2.815273e-50 | -8.615850e-47 |
| Msa1082700 | Msa1386110 | -0.803701 | 3.074477e-49 | -8.615850e-47 |
| Msa0267760 | Msa1386110 | -0.804167 | 2.459920e-49 | -8.615850e-47 |
| Msa0269360 | Msa1386110 | -0.801282 | 9.691812e-49 | -8.615850e-47 |
| Msa0280900 | Msa1386110 | -0.820244 | 7.598772e-53 | -8.615850e-47 |
| Msa0288240 | Msa1386110 | -0.806743 | 7.093881e-50 | -8.615850e-47 |
| Msa0293860 | Msa1386110 | 0.812388 | 4.348553e-51 | -8.615850e-47 |
| Msa0301180 | Msa1386110 | -0.805571 | 1.251836e-49 | -8.615850e-47 |
| Msa1109570 | Msa1386110 | -0.813059 | 3.100432e-51 | -8.615850e-47 |
| Msa1159990 | Msa1386110 | -0.800854 | 1.185340e-48 | -8.615850e-47 |
| Msa1174010 | Msa1386110 | -0.808552 | 2.927654e-50 | -8.615850e-47 |
| Msa0526710 | Msa1386110 | -0.805880 | 1.078147e-49 | -8.615850e-47 |
| Msa0535030 | Msa1386110 | -0.808348 | 3.236502e-50 | -8.615850e-47 |
| Msa0535060 | Msa1386110 | -0.805889 | 1.073280e-49 | -8.615850e-47 |
| Msa0546380 | Msa1386110 | -0.815494 | 8.981649e-52 | -8.615850e-47 |
| Msa0577940 | Msa1386110 | 0.811386 | 7.184450e-51 | -8.615850e-47 |
| Msa0591060 | Msa1386110 | -0.824400 | 8.237560e-54 | -8.615850e-47 |
| Msa0591770 | Msa1386110 | -0.828774 | 7.458872e-55 | -8.615850e-47 |
| Msa0845590 | Msa1386110 | 0.807889 | 4.054658e-50 | -8.615850e-47 |
| Msa0854570 | Msa1386110 | -0.811963 | 5.382224e-51 | -8.615850e-47 |
| Msa0883030 | Msa1386110 | -0.803077 | 4.140974e-49 | -8.615850e-47 |
| Msa0890250 | Msa1386110 | -0.809969 | 1.454977e-50 | -8.615850e-47 |
| Msa0907700 | Msa1386110 | -0.832233 | 1.062789e-55 | -8.615850e-47 |
| Msa0937670 | Msa1386110 | -0.804464 | 2.133231e-49 | -8.615850e-47 |
| Msa0937810 | Msa1386110 | -0.801652 | 8.137784e-49 | -8.615850e-47 |
| Msa0946320 | Msa1386110 | -0.801636 | 8.200687e-49 | -8.615850e-47 |
| Msa0970570 | Msa1386110 | 0.805525 | 1.279972e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1386110 | MtrunA17_Chr7g0266171 | 98.776 | 245 | 3 | 0 | 1 | 245 | 1 | 245 | 1.12e-177 | 488 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1386110 | AT3G52760.1 | 69.261 | 257 | 67 | 4 | 1 | 245 | 1 | 257 | 5.66e-123 | 350 |
| Msa1386110 | AT2G36300.1 | 67.681 | 263 | 59 | 5 | 1 | 245 | 1 | 255 | 4.59e-115 | 330 |
Find 69 sgRNAs with CRISPR-Local
Find 86 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCCACAGGGTGGTTTCTT+TGG | 0.102268 | tig0020787:+19100 | Msa1386110:CDS |
| TGCGGGTCGAACTGGAAATT+TGG | 0.234078 | tig0020787:+19003 | Msa1386110:CDS |
| TTCCACAGGGTGGTTTCTTT+GGG | 0.249145 | tig0020787:+19101 | Msa1386110:CDS |
| GGAACCACCACCGCCGATTC+CGG | 0.282867 | tig0020787:-18723 | None:intergenic |
| GAACCACCACCGCCGATTCC+GGG | 0.362735 | tig0020787:-18722 | None:intergenic |
| GTATTCATCCGGATCAAATC+TGG | 0.368693 | tig0020787:+18786 | Msa1386110:CDS |
| AACGCCATATAGAGAAGAAT+TGG | 0.368721 | tig0020787:-18881 | None:intergenic |
| TGGTCCAATTCTTCTCTATA+TGG | 0.369922 | tig0020787:+18877 | Msa1386110:CDS |
| CATACTTGTACCAGTGTTGT+TGG | 0.376301 | tig0020787:+19031 | Msa1386110:CDS |
| AACATGCTTGCGGGTCGAAC+TGG | 0.383114 | tig0020787:+18995 | Msa1386110:CDS |
| CGGTATGGTTCACGCGAAAC+GGG | 0.383392 | tig0020787:-18832 | None:intergenic |
| CTCCTCGTCGTCGAAGTTAA+CGG | 0.422501 | tig0020787:-18744 | None:intergenic |
| TTTGGTTGGAACGGTGGTAT+TGG | 0.423341 | tig0020787:-18623 | None:intergenic |
| ATGAAAGGGATGCCGGAGTT+TGG | 0.440296 | tig0020787:-18641 | None:intergenic |
| ACGGTATGGTTCACGCGAAA+CGG | 0.443655 | tig0020787:-18833 | None:intergenic |
| ATCTACTCTGGTCCCGGAAT+CGG | 0.456452 | tig0020787:+18710 | Msa1386110:CDS |
| CTTGTGGTTTCTCTTACTGA+TGG | 0.457923 | tig0020787:+19175 | Msa1386110:CDS |
| GGTCCCGGAATCGGCGGTGG+TGG | 0.458366 | tig0020787:+18719 | Msa1386110:CDS |
| TGGACCGGAGGAGGTGGAAA+CGG | 0.462451 | tig0020787:-18687 | None:intergenic |
| CACAAAGACGCTGATCTCTC+TGG | 0.477534 | tig0020787:+18857 | Msa1386110:CDS |
| GGAGGAGGTGGAAACGGCGG+CGG | 0.482053 | tig0020787:-18681 | None:intergenic |
| CCGACGGAGGCGAAGGATAC+CGG | 0.487942 | tig0020787:-18563 | None:intergenic |
| ATTCCGGGACCAGAGTAGAT+TGG | 0.488100 | tig0020787:-18707 | None:intergenic |
| TGGGCTACTAGAGCTTCAAC+GGG | 0.501360 | tig0020787:+19151 | Msa1386110:CDS |
| CGATGTCAAATGACATGAAA+GGG | 0.504894 | tig0020787:-18655 | None:intergenic |
| CCGGTATCCTTCGCCTCCGT+CGG | 0.505190 | tig0020787:+18563 | Msa1386110:CDS |
| TCTGGTCCCGGAATCGGCGG+TGG | 0.508217 | tig0020787:+18716 | Msa1386110:CDS |
| GTAGATTGGACCGGAGGAGG+TGG | 0.509987 | tig0020787:-18693 | None:intergenic |
| GCCGCCGTTTCCACCTCCTC+CGG | 0.518829 | tig0020787:+18683 | Msa1386110:CDS |
| ATGCCGGAGTTTGGTTGGAA+CGG | 0.525630 | tig0020787:-18632 | None:intergenic |
| TAGAGCTTCAACGGGGCTTG+TGG | 0.525930 | tig0020787:+19159 | Msa1386110:CDS |
| GGGGTTACCGACGGAGGCGA+AGG | 0.531653 | tig0020787:-18570 | None:intergenic |
| AAGGGATGCCGGAGTTTGGT+TGG | 0.532020 | tig0020787:-18637 | None:intergenic |
| CGACGAGCTCGGTATTCATC+CGG | 0.535700 | tig0020787:+18775 | Msa1386110:CDS |
| ATACCGAGCTCGTCGAGAAG+AGG | 0.537974 | tig0020787:-18767 | None:intergenic |
| GGTCCAATCTACTCTGGTCC+CGG | 0.538685 | tig0020787:+18704 | Msa1386110:CDS |
| CAGCGTCTTTGTGAACGGTA+TGG | 0.542374 | tig0020787:-18847 | None:intergenic |
| CCTTTCATGTCATTTGACAT+CGG | 0.544673 | tig0020787:+18656 | Msa1386110:CDS |
| TTGTCCGGCGGGGTTACCGA+CGG | 0.546984 | tig0020787:-18579 | None:intergenic |
| ATGGGCTACTAGAGCTTCAA+CGG | 0.549815 | tig0020787:+19150 | Msa1386110:CDS |
| TACTCTGGTCCCGGAATCGG+CGG | 0.561190 | tig0020787:+18713 | Msa1386110:CDS |
| TGTCTCTTTCAATTACTCGC+CGG | 0.564214 | tig0020787:+18905 | Msa1386110:CDS |
| GAGCCTCTTCTCGACGAGCT+CGG | 0.565975 | tig0020787:+18764 | Msa1386110:CDS |
| AAATGACATGAAAGGGATGC+CGG | 0.570013 | tig0020787:-18648 | None:intergenic |
| GCCTCCGTCGGTAACCCCGC+CGG | 0.572655 | tig0020787:+18575 | Msa1386110:CDS |
| TCCTCCGGTCCAATCTACTC+TGG | 0.574768 | tig0020787:+18698 | Msa1386110:CDS |
| AGAGTAGATTGGACCGGAGG+AGG | 0.576450 | tig0020787:-18696 | None:intergenic |
| CCGGAGTTTGGTTGGAACGG+TGG | 0.579512 | tig0020787:-18629 | None:intergenic |
| CCACCGTTCCAACCAAACTC+CGG | 0.614609 | tig0020787:+18629 | Msa1386110:CDS |
| GGGACCAGAGTAGATTGGAC+CGG | 0.616175 | tig0020787:-18702 | None:intergenic |
| GAGATCAGCGTCTTTGTGAA+CGG | 0.616493 | tig0020787:-18852 | None:intergenic |
| TGGTTATTCTATGTTGCCAG+TGG | 0.618449 | tig0020787:+19051 | Msa1386110:CDS |
| GGAACGGTGGTATTGGTACA+CGG | 0.619478 | tig0020787:-18616 | None:intergenic |
| CCGATGTCAAATGACATGAA+AGG | 0.627556 | tig0020787:-18656 | None:intergenic |
| GAAAGAATTCAAAGTCCCAC+CGG | 0.628112 | tig0020787:+18544 | Msa1386110:CDS |
| TCCGGCGGGGTTACCGACGG+AGG | 0.630208 | tig0020787:-18576 | None:intergenic |
| ACCAGAGTAGATTGGACCGG+AGG | 0.633247 | tig0020787:-18699 | None:intergenic |
| ACGGAGGCGAAGGATACCGG+TGG | 0.636258 | tig0020787:-18560 | None:intergenic |
| CATAGAATAACCAACAACAC+TGG | 0.637689 | tig0020787:-19041 | None:intergenic |
| TTCCGTTAACTTCGACGACG+AGG | 0.637706 | tig0020787:+18742 | Msa1386110:CDS |
| ATTGCAGAGAAAATCACCAC+TGG | 0.645448 | tig0020787:-19067 | None:intergenic |
| ACCGGAGGAGGTGGAAACGG+CGG | 0.648522 | tig0020787:-18684 | None:intergenic |
| AATCTGGAGCAAAATCAGAT+CGG | 0.650716 | tig0020787:+18802 | Msa1386110:CDS |
| CGGAGGCGAAGGATACCGGT+GGG | 0.687481 | tig0020787:-18559 | None:intergenic |
| AGCCCAAAGAAACCACCCTG+TGG | 0.689092 | tig0020787:-19103 | None:intergenic |
| ATGGCTGTGATGAACATCGT+GGG | 0.690522 | tig0020787:+19194 | Msa1386110:CDS |
| GATGGCTGTGATGAACATCG+TGG | 0.761743 | tig0020787:+19193 | Msa1386110:CDS |
| GGGCTACTAGAGCTTCAACG+GGG | 0.801660 | tig0020787:+19152 | Msa1386110:CDS |
| ACGGTGGTATTGGTACACGG+CGG | 0.809815 | tig0020787:-18613 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTCAATTCGGTGTGATTTT+AGG | + | tig0020787:18932-18951 | Msa1386110:CDS | 30.0% |
| CGATGTCAAATGACATGAAA+GGG | - | tig0020787:18658-18677 | None:intergenic | 35.0% | |
| ! | CCTTTCATGTCATTTGACAT+CGG | + | tig0020787:18656-18675 | Msa1386110:CDS | 35.0% |
| ! | ATTTTGCTCCAGATTTGATC+CGG | - | tig0020787:18797-18816 | None:intergenic | 35.0% |
| ! | AATCTGGAGCAAAATCAGAT+CGG | + | tig0020787:18802-18821 | Msa1386110:CDS | 35.0% |
| TGGTCCAATTCTTCTCTATA+TGG | + | tig0020787:18877-18896 | Msa1386110:CDS | 35.0% | |
| AACGCCATATAGAGAAGAAT+TGG | - | tig0020787:18884-18903 | None:intergenic | 35.0% | |
| ! | CACACCGAATTGAATTTTTC+CGG | - | tig0020787:18927-18946 | None:intergenic | 35.0% |
| !!! | AATTCGGTGTGATTTTAGGT+TGG | + | tig0020787:18936-18955 | Msa1386110:CDS | 35.0% |
| CATAGAATAACCAACAACAC+TGG | - | tig0020787:19044-19063 | None:intergenic | 35.0% | |
| !!! | AATATCGCTTTTTCTTCCAC+AGG | + | tig0020787:19087-19106 | Msa1386110:CDS | 35.0% |
| !!! | ATATCGCTTTTTCTTCCACA+GGG | + | tig0020787:19088-19107 | Msa1386110:CDS | 35.0% |
| GAAAGAATTCAAAGTCCCAC+CGG | + | tig0020787:18544-18563 | Msa1386110:CDS | 40.0% | |
| !! | TTTTGAAGATTTTGTCCGGC+GGG | - | tig0020787:18593-18612 | None:intergenic | 40.0% |
| !!! | GTTTTGAAGATTTTGTCCGG+CGG | - | tig0020787:18594-18613 | None:intergenic | 40.0% |
| !!! | GCGGTTTTGAAGATTTTGTC+CGG | - | tig0020787:18597-18616 | None:intergenic | 40.0% |
| AAATGACATGAAAGGGATGC+CGG | - | tig0020787:18651-18670 | None:intergenic | 40.0% | |
| CCGATGTCAAATGACATGAA+AGG | - | tig0020787:18659-18678 | None:intergenic | 40.0% | |
| GTATTCATCCGGATCAAATC+TGG | + | tig0020787:18786-18805 | Msa1386110:CDS | 40.0% | |
| TGTCTCTTTCAATTACTCGC+CGG | + | tig0020787:18905-18924 | Msa1386110:CDS | 40.0% | |
| CTCGCCGGAAAAATTCAATT+CGG | + | tig0020787:18920-18939 | Msa1386110:CDS | 40.0% | |
| !!! | TGTGATTTTAGGTTGGATCG+TGG | + | tig0020787:18943-18962 | Msa1386110:CDS | 40.0% |
| !! | CGTTGTTTTCAACATGCTTG+CGG | + | tig0020787:18985-19004 | Msa1386110:CDS | 40.0% |
| !! | GTTGTTTTCAACATGCTTGC+GGG | + | tig0020787:18986-19005 | Msa1386110:CDS | 40.0% |
| CATACTTGTACCAGTGTTGT+TGG | + | tig0020787:19031-19050 | Msa1386110:CDS | 40.0% | |
| TGGTTATTCTATGTTGCCAG+TGG | + | tig0020787:19051-19070 | Msa1386110:CDS | 40.0% | |
| ATTGCAGAGAAAATCACCAC+TGG | - | tig0020787:19070-19089 | None:intergenic | 40.0% | |
| ! | TCGCTGCGATTTTTGTTCTA+TGG | + | tig0020787:19131-19150 | Msa1386110:CDS | 40.0% |
| ! | CGCTGCGATTTTTGTTCTAT+GGG | + | tig0020787:19132-19151 | Msa1386110:CDS | 40.0% |
| CTTGTGGTTTCTCTTACTGA+TGG | + | tig0020787:19175-19194 | Msa1386110:CDS | 40.0% | |
| ! | TTTGAAGATTTTGTCCGGCG+GGG | - | tig0020787:18592-18611 | None:intergenic | 45.0% |
| TTTGGTTGGAACGGTGGTAT+TGG | - | tig0020787:18626-18645 | None:intergenic | 45.0% | |
| GAGATCAGCGTCTTTGTGAA+CGG | - | tig0020787:18855-18874 | None:intergenic | 45.0% | |
| TTCCACAGGGTGGTTTCTTT+GGG | + | tig0020787:19101-19120 | Msa1386110:CDS | 45.0% | |
| ! | ATGGGCTACTAGAGCTTCAA+CGG | + | tig0020787:19150-19169 | Msa1386110:CDS | 45.0% |
| ATGGCTGTGATGAACATCGT+GGG | + | tig0020787:19194-19213 | Msa1386110:CDS | 45.0% | |
| !! | GGAACGGTGGTATTGGTACA+CGG | - | tig0020787:18619-18638 | None:intergenic | 50.0% |
| ATGCCGGAGTTTGGTTGGAA+CGG | - | tig0020787:18635-18654 | None:intergenic | 50.0% | |
| ATGAAAGGGATGCCGGAGTT+TGG | - | tig0020787:18644-18663 | None:intergenic | 50.0% | |
| ATTCCGGGACCAGAGTAGAT+TGG | - | tig0020787:18710-18729 | None:intergenic | 50.0% | |
| ATCTACTCTGGTCCCGGAAT+CGG | + | tig0020787:18710-18729 | Msa1386110:CDS | 50.0% | |
| TTCCGTTAACTTCGACGACG+AGG | + | tig0020787:18742-18761 | Msa1386110:CDS | 50.0% | |
| CTCCTCGTCGTCGAAGTTAA+CGG | - | tig0020787:18747-18766 | None:intergenic | 50.0% | |
| ACGGTATGGTTCACGCGAAA+CGG | - | tig0020787:18836-18855 | None:intergenic | 50.0% | |
| CAGCGTCTTTGTGAACGGTA+TGG | - | tig0020787:18850-18869 | None:intergenic | 50.0% | |
| CACAAAGACGCTGATCTCTC+TGG | + | tig0020787:18857-18876 | Msa1386110:CDS | 50.0% | |
| TGCGGGTCGAACTGGAAATT+TGG | + | tig0020787:19003-19022 | Msa1386110:CDS | 50.0% | |
| !!! | TCGCTTTTTCTTCCACAGGG+TGG | + | tig0020787:19091-19110 | Msa1386110:CDS | 50.0% |
| CTTCCACAGGGTGGTTTCTT+TGG | + | tig0020787:19100-19119 | Msa1386110:CDS | 50.0% | |
| TGGGCTACTAGAGCTTCAAC+GGG | + | tig0020787:19151-19170 | Msa1386110:CDS | 50.0% | |
| GATGGCTGTGATGAACATCG+TGG | + | tig0020787:19193-19212 | Msa1386110:CDS | 50.0% | |
| !! | ACGGTGGTATTGGTACACGG+CGG | - | tig0020787:18616-18635 | None:intergenic | 55.0% |
| CCACCGTTCCAACCAAACTC+CGG | + | tig0020787:18629-18648 | Msa1386110:CDS | 55.0% | |
| AAGGGATGCCGGAGTTTGGT+TGG | - | tig0020787:18640-18659 | None:intergenic | 55.0% | |
| AGAGTAGATTGGACCGGAGG+AGG | - | tig0020787:18699-18718 | None:intergenic | 55.0% | |
| TCCTCCGGTCCAATCTACTC+TGG | + | tig0020787:18698-18717 | Msa1386110:CDS | 55.0% | |
| ACCAGAGTAGATTGGACCGG+AGG | - | tig0020787:18702-18721 | None:intergenic | 55.0% | |
| GGGACCAGAGTAGATTGGAC+CGG | - | tig0020787:18705-18724 | None:intergenic | 55.0% | |
| GGTCCAATCTACTCTGGTCC+CGG | + | tig0020787:18704-18723 | Msa1386110:CDS | 55.0% | |
| ATACCGAGCTCGTCGAGAAG+AGG | - | tig0020787:18770-18789 | None:intergenic | 55.0% | |
| CGACGAGCTCGGTATTCATC+CGG | + | tig0020787:18775-18794 | Msa1386110:CDS | 55.0% | |
| CGGTATGGTTCACGCGAAAC+GGG | - | tig0020787:18835-18854 | None:intergenic | 55.0% | |
| AACATGCTTGCGGGTCGAAC+TGG | + | tig0020787:18995-19014 | Msa1386110:CDS | 55.0% | |
| AGCCCAAAGAAACCACCCTG+TGG | - | tig0020787:19106-19125 | None:intergenic | 55.0% | |
| GGGCTACTAGAGCTTCAACG+GGG | + | tig0020787:19152-19171 | Msa1386110:CDS | 55.0% | |
| TAGAGCTTCAACGGGGCTTG+TGG | + | tig0020787:19159-19178 | Msa1386110:CDS | 55.0% | |
| CCGGAGTTTGGTTGGAACGG+TGG | - | tig0020787:18632-18651 | None:intergenic | 60.0% | |
| TGGACCGGAGGAGGTGGAAA+CGG | - | tig0020787:18690-18709 | None:intergenic | 60.0% | |
| GTAGATTGGACCGGAGGAGG+TGG | - | tig0020787:18696-18715 | None:intergenic | 60.0% | |
| TACTCTGGTCCCGGAATCGG+CGG | + | tig0020787:18713-18732 | Msa1386110:CDS | 60.0% | |
| GAGCCTCTTCTCGACGAGCT+CGG | + | tig0020787:18764-18783 | Msa1386110:CDS | 60.0% | |
| CGGAGGCGAAGGATACCGGT+GGG | - | tig0020787:18562-18581 | None:intergenic | 65.0% | |
| ACGGAGGCGAAGGATACCGG+TGG | - | tig0020787:18563-18582 | None:intergenic | 65.0% | |
| CCGACGGAGGCGAAGGATAC+CGG | - | tig0020787:18566-18585 | None:intergenic | 65.0% | |
| CCGGTATCCTTCGCCTCCGT+CGG | + | tig0020787:18563-18582 | Msa1386110:CDS | 65.0% | |
| TTGTCCGGCGGGGTTACCGA+CGG | - | tig0020787:18582-18601 | None:intergenic | 65.0% | |
| ACCGGAGGAGGTGGAAACGG+CGG | - | tig0020787:18687-18706 | None:intergenic | 65.0% | |
| !! | GAACCACCACCGCCGATTCC+GGG | - | tig0020787:18725-18744 | None:intergenic | 65.0% |
| !! | GGAACCACCACCGCCGATTC+CGG | - | tig0020787:18726-18745 | None:intergenic | 65.0% |
| GGGGTTACCGACGGAGGCGA+AGG | - | tig0020787:18573-18592 | None:intergenic | 70.0% | |
| GGAGGAGGTGGAAACGGCGG+CGG | - | tig0020787:18684-18703 | None:intergenic | 70.0% | |
| GCCGCCGTTTCCACCTCCTC+CGG | + | tig0020787:18683-18702 | Msa1386110:CDS | 70.0% | |
| TCTGGTCCCGGAATCGGCGG+TGG | + | tig0020787:18716-18735 | Msa1386110:CDS | 70.0% | |
| GCCTCCGTCGGTAACCCCGC+CGG | + | tig0020787:18575-18594 | Msa1386110:CDS | 75.0% | |
| TCCGGCGGGGTTACCGACGG+AGG | - | tig0020787:18579-18598 | None:intergenic | 75.0% | |
| GGTCCCGGAATCGGCGGTGG+TGG | + | tig0020787:18719-18738 | Msa1386110:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0020787 | gene | 18539 | 19276 | 18539 | ID=Msa1386110;Name=Msa1386110 |
| tig0020787 | mRNA | 18539 | 19276 | 18539 | ID=Msa1386110-mRNA-1;Parent=Msa1386110;Name=Msa1386110-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|245 |
| tig0020787 | exon | 18539 | 19276 | 18539 | ID=Msa1386110-mRNA-1:exon:9993;Parent=Msa1386110-mRNA-1 |
| tig0020787 | CDS | 18539 | 19276 | 18539 | ID=Msa1386110-mRNA-1:cds;Parent=Msa1386110-mRNA-1 |
| Gene Sequence |
| Protein sequence |
