Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1427660 | XP_003625805.1 | 98.776 | 245 | 3 | 0 | 1 | 245 | 1 | 245 | 1.22e-173 | 488 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1427660 | sp|Q8N8F6|YIPF7_HUMAN | 35.227 | 176 | 110 | 3 | 71 | 245 | 108 | 280 | 6.29e-31 | 118 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1427660 | G7L626 | 98.776 | 245 | 3 | 0 | 1 | 245 | 1 | 245 | 5.83e-174 | 488 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0027540 | Msa1427660 | -0.806228 | 9.110444e-50 | -8.615850e-47 |
| Msa0032840 | Msa1427660 | 0.831894 | 1.288593e-55 | -8.615850e-47 |
| Msa0046660 | Msa1427660 | 0.830830 | 2.354744e-55 | -8.615850e-47 |
| Msa0049650 | Msa1427660 | 0.812031 | 5.201329e-51 | -8.615850e-47 |
| Msa0075310 | Msa1427660 | -0.812696 | 3.722919e-51 | -8.615850e-47 |
| Msa0091770 | Msa1427660 | -0.807625 | 4.612639e-50 | -8.615850e-47 |
| Msa0095380 | Msa1427660 | -0.830868 | 2.304901e-55 | -8.615850e-47 |
| Msa0114540 | Msa1427660 | 0.817104 | 3.920132e-52 | -8.615850e-47 |
| Msa1358870 | Msa1427660 | 0.815972 | 7.029143e-52 | -8.615850e-47 |
| Msa1367080 | Msa1427660 | -0.812172 | 4.846029e-51 | -8.615850e-47 |
| Msa1386110 | Msa1427660 | 0.998395 | 7.491932e-264 | -8.615850e-47 |
| Msa1419800 | Msa1427660 | 0.927686 | 8.315491e-92 | -8.615850e-47 |
| Msa1427660 | Msa1429360 | 0.800142 | 1.655816e-48 | -8.615850e-47 |
| Msa1427660 | Msa1464560 | -0.800889 | 1.165983e-48 | -8.615850e-47 |
| Msa0618010 | Msa1427660 | -0.815296 | 9.943472e-52 | -8.615850e-47 |
| Msa0625530 | Msa1427660 | 0.817743 | 2.815157e-52 | -8.615850e-47 |
| Msa0627910 | Msa1427660 | -0.810247 | 1.267587e-50 | -8.615850e-47 |
| Msa0629370 | Msa1427660 | -0.811640 | 6.328398e-51 | -8.615850e-47 |
| Msa0638280 | Msa1427660 | -0.836814 | 7.506686e-57 | -8.615850e-47 |
| Msa0638320 | Msa1427660 | -0.834938 | 2.243085e-56 | -8.615850e-47 |
| Msa0642650 | Msa1427660 | -0.813565 | 2.400617e-51 | -8.615850e-47 |
| Msa0657670 | Msa1427660 | -0.803075 | 4.144344e-49 | -8.615850e-47 |
| Msa0669850 | Msa1427660 | -0.824724 | 6.910763e-54 | -8.615850e-47 |
| Msa0672120 | Msa1427660 | -0.810603 | 1.061907e-50 | -8.615850e-47 |
| Msa0677270 | Msa1427660 | -0.834800 | 2.430936e-56 | -8.615850e-47 |
| Msa0717920 | Msa1427660 | 0.812988 | 3.212822e-51 | -8.615850e-47 |
| Msa0725480 | Msa1427660 | 0.840371 | 9.050987e-58 | -8.615850e-47 |
| Msa0754720 | Msa1427660 | 0.800764 | 1.236680e-48 | -8.615850e-47 |
| Msa0756630 | Msa1427660 | 0.813935 | 1.989178e-51 | -8.615850e-47 |
| Msa0766100 | Msa1427660 | 0.827423 | 1.577533e-54 | -8.615850e-47 |
| Msa0774900 | Msa1427660 | 0.800784 | 1.225023e-48 | -8.615850e-47 |
| Msa0789270 | Msa1427660 | -0.805335 | 1.402976e-49 | -8.615850e-47 |
| Msa0789280 | Msa1427660 | -0.803821 | 2.903105e-49 | -8.615850e-47 |
| Msa0789290 | Msa1427660 | -0.806633 | 7.480764e-50 | -8.615850e-47 |
| Msa0813320 | Msa1427660 | 0.814292 | 1.659619e-51 | -8.615850e-47 |
| Msa0143140 | Msa1427660 | 0.939625 | 9.271540e-100 | -8.615850e-47 |
| Msa0156650 | Msa1427660 | 0.803918 | 2.771924e-49 | -8.615850e-47 |
| Msa0168100 | Msa1427660 | -0.806018 | 1.008199e-49 | -8.615850e-47 |
| Msa0172350 | Msa1427660 | -0.801720 | 7.881864e-49 | -8.615850e-47 |
| Msa0172960 | Msa1427660 | 0.821041 | 4.984261e-53 | -8.615850e-47 |
| Msa0182930 | Msa1427660 | -0.804321 | 2.284898e-49 | -8.615850e-47 |
| Msa0183620 | Msa1427660 | -0.802254 | 6.121799e-49 | -8.615850e-47 |
| Msa0200950 | Msa1427660 | 0.805211 | 1.489274e-49 | -8.615850e-47 |
| Msa0208630 | Msa1427660 | -0.821781 | 3.364287e-53 | -8.615850e-47 |
| Msa0228340 | Msa1427660 | 0.802269 | 6.078103e-49 | -8.615850e-47 |
| Msa0230550 | Msa1427660 | 0.821331 | 4.273959e-53 | -8.615850e-47 |
| Msa0230770 | Msa1427660 | -0.808774 | 2.625199e-50 | -8.615850e-47 |
| Msa0238070 | Msa1427660 | 0.832184 | 1.092775e-55 | -8.615850e-47 |
| Msa1237030 | Msa1427660 | -0.807005 | 6.241856e-50 | -8.615850e-47 |
| Msa1246740 | Msa1427660 | -0.815038 | 1.134239e-51 | -8.615850e-47 |
| Msa1253930 | Msa1427660 | 0.805340 | 1.399804e-49 | -8.615850e-47 |
| Msa1264020 | Msa1427660 | -0.814914 | 1.208786e-51 | -8.615850e-47 |
| Msa1265960 | Msa1427660 | -0.810120 | 1.349693e-50 | -8.615850e-47 |
| Msa1280130 | Msa1427660 | -0.817190 | 3.749870e-52 | -8.615850e-47 |
| Msa1284520 | Msa1427660 | -0.804683 | 1.920322e-49 | -8.615850e-47 |
| Msa1307660 | Msa1427660 | 0.807473 | 4.968647e-50 | -8.615850e-47 |
| Msa0376510 | Msa1427660 | -0.817886 | 2.613653e-52 | -8.615850e-47 |
| Msa0380040 | Msa1427660 | -0.807165 | 5.776215e-50 | -8.615850e-47 |
| Msa0398640 | Msa1427660 | -0.818877 | 1.558637e-52 | -8.615850e-47 |
| Msa0414950 | Msa1427660 | 0.840782 | 7.066707e-58 | -8.615850e-47 |
| Msa0419820 | Msa1427660 | -0.800919 | 1.149864e-48 | -8.615850e-47 |
| Msa0423360 | Msa1427660 | 0.800112 | 1.679417e-48 | -8.615850e-47 |
| Msa0425050 | Msa1427660 | -0.813574 | 2.388719e-51 | -8.615850e-47 |
| Msa0429290 | Msa1427660 | -0.816107 | 6.558586e-52 | -8.615850e-47 |
| Msa0459770 | Msa1427660 | 0.830656 | 2.597349e-55 | -8.615850e-47 |
| Msa0475580 | Msa1427660 | -0.807259 | 5.516122e-50 | -8.615850e-47 |
| Msa0480980 | Msa1427660 | -0.809131 | 2.201525e-50 | -8.615850e-47 |
| Msa1004900 | Msa1427660 | 0.812691 | 3.732381e-51 | -8.615850e-47 |
| Msa1023400 | Msa1427660 | -0.806309 | 8.756321e-50 | -8.615850e-47 |
| Msa1044340 | Msa1427660 | -0.812171 | 4.849673e-51 | -8.615850e-47 |
| Msa1082700 | Msa1427660 | -0.806643 | 7.445547e-50 | -8.615850e-47 |
| Msa0267760 | Msa1427660 | -0.807214 | 5.639489e-50 | -8.615850e-47 |
| Msa0269360 | Msa1427660 | -0.807674 | 4.504786e-50 | -8.615850e-47 |
| Msa0280900 | Msa1427660 | -0.823201 | 1.573244e-53 | -8.615850e-47 |
| Msa0288240 | Msa1427660 | -0.808974 | 2.378624e-50 | -8.615850e-47 |
| Msa0293860 | Msa1427660 | 0.815974 | 7.020048e-52 | -8.615850e-47 |
| Msa0296760 | Msa1427660 | -0.806267 | 8.936817e-50 | -8.615850e-47 |
| Msa0298970 | Msa1427660 | -0.800110 | 1.680408e-48 | -8.615850e-47 |
| Msa0301180 | Msa1427660 | -0.808329 | 3.266990e-50 | -8.615850e-47 |
| Msa0326670 | Msa1427660 | -0.806500 | 7.983573e-50 | -8.615850e-47 |
| Msa0333720 | Msa1427660 | 0.804161 | 2.467355e-49 | -8.615850e-47 |
| Msa0358170 | Msa1427660 | -0.801991 | 6.934568e-49 | -8.615850e-47 |
| Msa1109570 | Msa1427660 | -0.812015 | 5.244243e-51 | -8.615850e-47 |
| Msa1129560 | Msa1427660 | -0.804737 | 1.871541e-49 | -8.615850e-47 |
| Msa1159990 | Msa1427660 | -0.802812 | 4.696634e-49 | -8.615850e-47 |
| Msa1174010 | Msa1427660 | -0.808643 | 2.799972e-50 | -8.615850e-47 |
| Msa1221200 | Msa1427660 | 0.802139 | 6.463417e-49 | -8.615850e-47 |
| Msa0526710 | Msa1427660 | -0.809128 | 2.205074e-50 | -8.615850e-47 |
| Msa0535030 | Msa1427660 | -0.814524 | 1.474755e-51 | -8.615850e-47 |
| Msa0535060 | Msa1427660 | -0.812590 | 3.927219e-51 | -8.615850e-47 |
| Msa0546380 | Msa1427660 | -0.820267 | 7.507477e-53 | -8.615850e-47 |
| Msa0564930 | Msa1427660 | -0.801871 | 7.339137e-49 | -8.615850e-47 |
| Msa0577940 | Msa1427660 | 0.815330 | 9.772227e-52 | -8.615850e-47 |
| Msa0581760 | Msa1427660 | -0.800516 | 1.389434e-48 | -8.615850e-47 |
| Msa0591060 | Msa1427660 | -0.827954 | 1.175961e-54 | -8.615850e-47 |
| Msa0591770 | Msa1427660 | -0.832822 | 7.591264e-56 | -8.615850e-47 |
| Msa0845590 | Msa1427660 | 0.814537 | 1.464555e-51 | -8.615850e-47 |
| Msa0854570 | Msa1427660 | -0.815851 | 7.478527e-52 | -8.615850e-47 |
| Msa0867050 | Msa1427660 | 0.800915 | 1.151858e-48 | -8.615850e-47 |
| Msa0883030 | Msa1427660 | -0.805470 | 1.314346e-49 | -8.615850e-47 |
| Msa0889740 | Msa1427660 | -0.801252 | 9.830377e-49 | -8.615850e-47 |
| Msa0890250 | Msa1427660 | -0.813444 | 2.552196e-51 | -8.615850e-47 |
| Msa0907700 | Msa1427660 | -0.837158 | 6.131687e-57 | -8.615850e-47 |
| Msa0937670 | Msa1427660 | -0.812388 | 4.348387e-51 | -8.615850e-47 |
| Msa0937810 | Msa1427660 | -0.809049 | 2.292996e-50 | -8.615850e-47 |
| Msa0937940 | Msa1427660 | -0.801738 | 7.814871e-49 | -8.615850e-47 |
| Msa0946320 | Msa1427660 | -0.807801 | 4.232637e-50 | -8.615850e-47 |
| Msa0970570 | Msa1427660 | 0.810825 | 9.505157e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1427660 | MtrunA17_Chr7g0266171 | 98.776 | 245 | 3 | 0 | 1 | 245 | 1 | 245 | 1.12e-177 | 488 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1427660 | AT3G52760.1 | 69.261 | 257 | 67 | 4 | 1 | 245 | 1 | 257 | 5.66e-123 | 350 |
| Msa1427660 | AT2G36300.1 | 67.681 | 263 | 59 | 5 | 1 | 245 | 1 | 255 | 4.59e-115 | 330 |
Find 69 sgRNAs with CRISPR-Local
Find 86 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCCACAGGGTGGTTTCTT+TGG | 0.102268 | tig0026197:+39541 | Msa1427660:CDS |
| TGCGGGTCGAACTGGAAATT+TGG | 0.234078 | tig0026197:+39444 | Msa1427660:CDS |
| TTCCACAGGGTGGTTTCTTT+GGG | 0.249145 | tig0026197:+39542 | Msa1427660:CDS |
| GGAACCACCACCGCCGATTC+CGG | 0.282867 | tig0026197:-39164 | None:intergenic |
| GAACCACCACCGCCGATTCC+GGG | 0.362735 | tig0026197:-39163 | None:intergenic |
| GTATTCATCCGGATCAAATC+TGG | 0.368693 | tig0026197:+39227 | Msa1427660:CDS |
| AACGCCATATAGAGAAGAAT+TGG | 0.368721 | tig0026197:-39322 | None:intergenic |
| TGGTCCAATTCTTCTCTATA+TGG | 0.369922 | tig0026197:+39318 | Msa1427660:CDS |
| CATACTTGTACCAGTGTTGT+TGG | 0.376301 | tig0026197:+39472 | Msa1427660:CDS |
| AACATGCTTGCGGGTCGAAC+TGG | 0.383114 | tig0026197:+39436 | Msa1427660:CDS |
| CGGTATGGTTCACGCGAAAC+GGG | 0.383392 | tig0026197:-39273 | None:intergenic |
| CTCCTCGTCGTCGAAGTTAA+CGG | 0.422501 | tig0026197:-39185 | None:intergenic |
| TTTGGTTGGAACGGTGGTAT+TGG | 0.423341 | tig0026197:-39064 | None:intergenic |
| ATGAAAGGGATGCCGGAGTT+TGG | 0.440296 | tig0026197:-39082 | None:intergenic |
| ACGGTATGGTTCACGCGAAA+CGG | 0.443655 | tig0026197:-39274 | None:intergenic |
| ATCTACTCTGGTCCCGGAAT+CGG | 0.456452 | tig0026197:+39151 | Msa1427660:CDS |
| CTTGTGGTTTCTCTTACTGA+TGG | 0.457923 | tig0026197:+39616 | Msa1427660:CDS |
| GGTCCCGGAATCGGCGGTGG+TGG | 0.458366 | tig0026197:+39160 | Msa1427660:CDS |
| TGGACCGGAGGAGGTGGAAA+CGG | 0.462451 | tig0026197:-39128 | None:intergenic |
| CACAAAGACGCTGATCTCTC+TGG | 0.477534 | tig0026197:+39298 | Msa1427660:CDS |
| GGAGGAGGTGGAAACGGCGG+CGG | 0.482053 | tig0026197:-39122 | None:intergenic |
| CCGACGGAGGCGAAGGATAC+CGG | 0.487942 | tig0026197:-39004 | None:intergenic |
| ATTCCGGGACCAGAGTAGAT+TGG | 0.488100 | tig0026197:-39148 | None:intergenic |
| TGGGCTACTAGAGCTTCAAC+GGG | 0.501360 | tig0026197:+39592 | Msa1427660:CDS |
| CGATGTCAAATGACATGAAA+GGG | 0.504894 | tig0026197:-39096 | None:intergenic |
| CCGGTATCCTTCGCCTCCGT+CGG | 0.505190 | tig0026197:+39004 | Msa1427660:CDS |
| TCTGGTCCCGGAATCGGCGG+TGG | 0.508217 | tig0026197:+39157 | Msa1427660:CDS |
| GTAGATTGGACCGGAGGAGG+TGG | 0.509987 | tig0026197:-39134 | None:intergenic |
| GCCGCCGTTTCCACCTCCTC+CGG | 0.518829 | tig0026197:+39124 | Msa1427660:CDS |
| ATGCCGGAGTTTGGTTGGAA+CGG | 0.525630 | tig0026197:-39073 | None:intergenic |
| TAGAGCTTCAACGGGGCTTG+TGG | 0.525930 | tig0026197:+39600 | Msa1427660:CDS |
| GGGGTTACCGACGGAGGCGA+AGG | 0.531653 | tig0026197:-39011 | None:intergenic |
| AAGGGATGCCGGAGTTTGGT+TGG | 0.532020 | tig0026197:-39078 | None:intergenic |
| CGACGAGCTCGGTATTCATC+CGG | 0.535700 | tig0026197:+39216 | Msa1427660:CDS |
| ATACCGAGCTCGTCGAGAAG+AGG | 0.537974 | tig0026197:-39208 | None:intergenic |
| GGTCCAATCTACTCTGGTCC+CGG | 0.538685 | tig0026197:+39145 | Msa1427660:CDS |
| CAGCGTCTTTGTGAACGGTA+TGG | 0.542374 | tig0026197:-39288 | None:intergenic |
| CCTTTCATGTCATTTGACAT+CGG | 0.544673 | tig0026197:+39097 | Msa1427660:CDS |
| TTGTCCGGCGGGGTTACCGA+CGG | 0.546984 | tig0026197:-39020 | None:intergenic |
| ATGGGCTACTAGAGCTTCAA+CGG | 0.549815 | tig0026197:+39591 | Msa1427660:CDS |
| TACTCTGGTCCCGGAATCGG+CGG | 0.561190 | tig0026197:+39154 | Msa1427660:CDS |
| TGTCTCTTTCAATTACTCGC+CGG | 0.564214 | tig0026197:+39346 | Msa1427660:CDS |
| GAGCCTCTTCTCGACGAGCT+CGG | 0.565975 | tig0026197:+39205 | Msa1427660:CDS |
| AAATGACATGAAAGGGATGC+CGG | 0.570013 | tig0026197:-39089 | None:intergenic |
| GCCTCCGTCGGTAACCCCGC+CGG | 0.572655 | tig0026197:+39016 | Msa1427660:CDS |
| TCCTCCGGTCCAATCTACTC+TGG | 0.574768 | tig0026197:+39139 | Msa1427660:CDS |
| AGAGTAGATTGGACCGGAGG+AGG | 0.576450 | tig0026197:-39137 | None:intergenic |
| CCGGAGTTTGGTTGGAACGG+TGG | 0.579512 | tig0026197:-39070 | None:intergenic |
| CCACCGTTCCAACCAAACTC+CGG | 0.614609 | tig0026197:+39070 | Msa1427660:CDS |
| GGGACCAGAGTAGATTGGAC+CGG | 0.616175 | tig0026197:-39143 | None:intergenic |
| GAGATCAGCGTCTTTGTGAA+CGG | 0.616493 | tig0026197:-39293 | None:intergenic |
| TGGTTATTCTATGTTGCCAG+TGG | 0.618449 | tig0026197:+39492 | Msa1427660:CDS |
| GGAACGGTGGTATTGGTACA+CGG | 0.619478 | tig0026197:-39057 | None:intergenic |
| CCGATGTCAAATGACATGAA+AGG | 0.627556 | tig0026197:-39097 | None:intergenic |
| GAAAGAATTCAAAGTCCCAC+CGG | 0.628112 | tig0026197:+38985 | Msa1427660:CDS |
| TCCGGCGGGGTTACCGACGG+AGG | 0.630208 | tig0026197:-39017 | None:intergenic |
| ACCAGAGTAGATTGGACCGG+AGG | 0.633247 | tig0026197:-39140 | None:intergenic |
| ACGGAGGCGAAGGATACCGG+TGG | 0.636258 | tig0026197:-39001 | None:intergenic |
| CATAGAATAACCAACAACAC+TGG | 0.637689 | tig0026197:-39482 | None:intergenic |
| TTCCGTTAACTTCGACGACG+AGG | 0.637706 | tig0026197:+39183 | Msa1427660:CDS |
| ATTGCAGAGAAAATCACCAC+TGG | 0.645448 | tig0026197:-39508 | None:intergenic |
| ACCGGAGGAGGTGGAAACGG+CGG | 0.648522 | tig0026197:-39125 | None:intergenic |
| AATCTGGAGCAAAATCAGAT+CGG | 0.650716 | tig0026197:+39243 | Msa1427660:CDS |
| CGGAGGCGAAGGATACCGGT+GGG | 0.687481 | tig0026197:-39000 | None:intergenic |
| AGCCCAAAGAAACCACCCTG+TGG | 0.689092 | tig0026197:-39544 | None:intergenic |
| ATGGCTGTGATGAACATCGT+GGG | 0.690522 | tig0026197:+39635 | Msa1427660:CDS |
| GATGGCTGTGATGAACATCG+TGG | 0.761743 | tig0026197:+39634 | Msa1427660:CDS |
| GGGCTACTAGAGCTTCAACG+GGG | 0.801660 | tig0026197:+39593 | Msa1427660:CDS |
| ACGGTGGTATTGGTACACGG+CGG | 0.809815 | tig0026197:-39054 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTCAATTCGGTGTGATTTT+AGG | + | tig0026197:39373-39392 | Msa1427660:CDS | 30.0% |
| CGATGTCAAATGACATGAAA+GGG | - | tig0026197:39099-39118 | None:intergenic | 35.0% | |
| ! | CCTTTCATGTCATTTGACAT+CGG | + | tig0026197:39097-39116 | Msa1427660:CDS | 35.0% |
| ! | ATTTTGCTCCAGATTTGATC+CGG | - | tig0026197:39238-39257 | None:intergenic | 35.0% |
| ! | AATCTGGAGCAAAATCAGAT+CGG | + | tig0026197:39243-39262 | Msa1427660:CDS | 35.0% |
| TGGTCCAATTCTTCTCTATA+TGG | + | tig0026197:39318-39337 | Msa1427660:CDS | 35.0% | |
| AACGCCATATAGAGAAGAAT+TGG | - | tig0026197:39325-39344 | None:intergenic | 35.0% | |
| ! | CACACCGAATTGAATTTTTC+CGG | - | tig0026197:39368-39387 | None:intergenic | 35.0% |
| !!! | AATTCGGTGTGATTTTAGGT+TGG | + | tig0026197:39377-39396 | Msa1427660:CDS | 35.0% |
| CATAGAATAACCAACAACAC+TGG | - | tig0026197:39485-39504 | None:intergenic | 35.0% | |
| !!! | AATATCGCTTTTTCTTCCAC+AGG | + | tig0026197:39528-39547 | Msa1427660:CDS | 35.0% |
| !!! | ATATCGCTTTTTCTTCCACA+GGG | + | tig0026197:39529-39548 | Msa1427660:CDS | 35.0% |
| GAAAGAATTCAAAGTCCCAC+CGG | + | tig0026197:38985-39004 | Msa1427660:CDS | 40.0% | |
| !! | TTTTGAAGATTTTGTCCGGC+GGG | - | tig0026197:39034-39053 | None:intergenic | 40.0% |
| !!! | GTTTTGAAGATTTTGTCCGG+CGG | - | tig0026197:39035-39054 | None:intergenic | 40.0% |
| !!! | GCGGTTTTGAAGATTTTGTC+CGG | - | tig0026197:39038-39057 | None:intergenic | 40.0% |
| AAATGACATGAAAGGGATGC+CGG | - | tig0026197:39092-39111 | None:intergenic | 40.0% | |
| CCGATGTCAAATGACATGAA+AGG | - | tig0026197:39100-39119 | None:intergenic | 40.0% | |
| GTATTCATCCGGATCAAATC+TGG | + | tig0026197:39227-39246 | Msa1427660:CDS | 40.0% | |
| TGTCTCTTTCAATTACTCGC+CGG | + | tig0026197:39346-39365 | Msa1427660:CDS | 40.0% | |
| CTCGCCGGAAAAATTCAATT+CGG | + | tig0026197:39361-39380 | Msa1427660:CDS | 40.0% | |
| !!! | TGTGATTTTAGGTTGGATCG+TGG | + | tig0026197:39384-39403 | Msa1427660:CDS | 40.0% |
| !! | CGTTGTTTTCAACATGCTTG+CGG | + | tig0026197:39426-39445 | Msa1427660:CDS | 40.0% |
| !! | GTTGTTTTCAACATGCTTGC+GGG | + | tig0026197:39427-39446 | Msa1427660:CDS | 40.0% |
| CATACTTGTACCAGTGTTGT+TGG | + | tig0026197:39472-39491 | Msa1427660:CDS | 40.0% | |
| TGGTTATTCTATGTTGCCAG+TGG | + | tig0026197:39492-39511 | Msa1427660:CDS | 40.0% | |
| ATTGCAGAGAAAATCACCAC+TGG | - | tig0026197:39511-39530 | None:intergenic | 40.0% | |
| ! | TCGCTGCGATTTTTGTTCTA+TGG | + | tig0026197:39572-39591 | Msa1427660:CDS | 40.0% |
| ! | CGCTGCGATTTTTGTTCTAT+GGG | + | tig0026197:39573-39592 | Msa1427660:CDS | 40.0% |
| CTTGTGGTTTCTCTTACTGA+TGG | + | tig0026197:39616-39635 | Msa1427660:CDS | 40.0% | |
| ! | TTTGAAGATTTTGTCCGGCG+GGG | - | tig0026197:39033-39052 | None:intergenic | 45.0% |
| TTTGGTTGGAACGGTGGTAT+TGG | - | tig0026197:39067-39086 | None:intergenic | 45.0% | |
| GAGATCAGCGTCTTTGTGAA+CGG | - | tig0026197:39296-39315 | None:intergenic | 45.0% | |
| TTCCACAGGGTGGTTTCTTT+GGG | + | tig0026197:39542-39561 | Msa1427660:CDS | 45.0% | |
| ! | ATGGGCTACTAGAGCTTCAA+CGG | + | tig0026197:39591-39610 | Msa1427660:CDS | 45.0% |
| ATGGCTGTGATGAACATCGT+GGG | + | tig0026197:39635-39654 | Msa1427660:CDS | 45.0% | |
| !! | GGAACGGTGGTATTGGTACA+CGG | - | tig0026197:39060-39079 | None:intergenic | 50.0% |
| ATGCCGGAGTTTGGTTGGAA+CGG | - | tig0026197:39076-39095 | None:intergenic | 50.0% | |
| ATGAAAGGGATGCCGGAGTT+TGG | - | tig0026197:39085-39104 | None:intergenic | 50.0% | |
| ATTCCGGGACCAGAGTAGAT+TGG | - | tig0026197:39151-39170 | None:intergenic | 50.0% | |
| ATCTACTCTGGTCCCGGAAT+CGG | + | tig0026197:39151-39170 | Msa1427660:CDS | 50.0% | |
| TTCCGTTAACTTCGACGACG+AGG | + | tig0026197:39183-39202 | Msa1427660:CDS | 50.0% | |
| CTCCTCGTCGTCGAAGTTAA+CGG | - | tig0026197:39188-39207 | None:intergenic | 50.0% | |
| ACGGTATGGTTCACGCGAAA+CGG | - | tig0026197:39277-39296 | None:intergenic | 50.0% | |
| CAGCGTCTTTGTGAACGGTA+TGG | - | tig0026197:39291-39310 | None:intergenic | 50.0% | |
| CACAAAGACGCTGATCTCTC+TGG | + | tig0026197:39298-39317 | Msa1427660:CDS | 50.0% | |
| TGCGGGTCGAACTGGAAATT+TGG | + | tig0026197:39444-39463 | Msa1427660:CDS | 50.0% | |
| !!! | TCGCTTTTTCTTCCACAGGG+TGG | + | tig0026197:39532-39551 | Msa1427660:CDS | 50.0% |
| CTTCCACAGGGTGGTTTCTT+TGG | + | tig0026197:39541-39560 | Msa1427660:CDS | 50.0% | |
| TGGGCTACTAGAGCTTCAAC+GGG | + | tig0026197:39592-39611 | Msa1427660:CDS | 50.0% | |
| GATGGCTGTGATGAACATCG+TGG | + | tig0026197:39634-39653 | Msa1427660:CDS | 50.0% | |
| !! | ACGGTGGTATTGGTACACGG+CGG | - | tig0026197:39057-39076 | None:intergenic | 55.0% |
| CCACCGTTCCAACCAAACTC+CGG | + | tig0026197:39070-39089 | Msa1427660:CDS | 55.0% | |
| AAGGGATGCCGGAGTTTGGT+TGG | - | tig0026197:39081-39100 | None:intergenic | 55.0% | |
| AGAGTAGATTGGACCGGAGG+AGG | - | tig0026197:39140-39159 | None:intergenic | 55.0% | |
| TCCTCCGGTCCAATCTACTC+TGG | + | tig0026197:39139-39158 | Msa1427660:CDS | 55.0% | |
| ACCAGAGTAGATTGGACCGG+AGG | - | tig0026197:39143-39162 | None:intergenic | 55.0% | |
| GGGACCAGAGTAGATTGGAC+CGG | - | tig0026197:39146-39165 | None:intergenic | 55.0% | |
| GGTCCAATCTACTCTGGTCC+CGG | + | tig0026197:39145-39164 | Msa1427660:CDS | 55.0% | |
| ATACCGAGCTCGTCGAGAAG+AGG | - | tig0026197:39211-39230 | None:intergenic | 55.0% | |
| CGACGAGCTCGGTATTCATC+CGG | + | tig0026197:39216-39235 | Msa1427660:CDS | 55.0% | |
| CGGTATGGTTCACGCGAAAC+GGG | - | tig0026197:39276-39295 | None:intergenic | 55.0% | |
| AACATGCTTGCGGGTCGAAC+TGG | + | tig0026197:39436-39455 | Msa1427660:CDS | 55.0% | |
| AGCCCAAAGAAACCACCCTG+TGG | - | tig0026197:39547-39566 | None:intergenic | 55.0% | |
| GGGCTACTAGAGCTTCAACG+GGG | + | tig0026197:39593-39612 | Msa1427660:CDS | 55.0% | |
| TAGAGCTTCAACGGGGCTTG+TGG | + | tig0026197:39600-39619 | Msa1427660:CDS | 55.0% | |
| CCGGAGTTTGGTTGGAACGG+TGG | - | tig0026197:39073-39092 | None:intergenic | 60.0% | |
| TGGACCGGAGGAGGTGGAAA+CGG | - | tig0026197:39131-39150 | None:intergenic | 60.0% | |
| GTAGATTGGACCGGAGGAGG+TGG | - | tig0026197:39137-39156 | None:intergenic | 60.0% | |
| TACTCTGGTCCCGGAATCGG+CGG | + | tig0026197:39154-39173 | Msa1427660:CDS | 60.0% | |
| GAGCCTCTTCTCGACGAGCT+CGG | + | tig0026197:39205-39224 | Msa1427660:CDS | 60.0% | |
| CGGAGGCGAAGGATACCGGT+GGG | - | tig0026197:39003-39022 | None:intergenic | 65.0% | |
| ACGGAGGCGAAGGATACCGG+TGG | - | tig0026197:39004-39023 | None:intergenic | 65.0% | |
| CCGACGGAGGCGAAGGATAC+CGG | - | tig0026197:39007-39026 | None:intergenic | 65.0% | |
| CCGGTATCCTTCGCCTCCGT+CGG | + | tig0026197:39004-39023 | Msa1427660:CDS | 65.0% | |
| TTGTCCGGCGGGGTTACCGA+CGG | - | tig0026197:39023-39042 | None:intergenic | 65.0% | |
| ACCGGAGGAGGTGGAAACGG+CGG | - | tig0026197:39128-39147 | None:intergenic | 65.0% | |
| !! | GAACCACCACCGCCGATTCC+GGG | - | tig0026197:39166-39185 | None:intergenic | 65.0% |
| !! | GGAACCACCACCGCCGATTC+CGG | - | tig0026197:39167-39186 | None:intergenic | 65.0% |
| GGGGTTACCGACGGAGGCGA+AGG | - | tig0026197:39014-39033 | None:intergenic | 70.0% | |
| GGAGGAGGTGGAAACGGCGG+CGG | - | tig0026197:39125-39144 | None:intergenic | 70.0% | |
| GCCGCCGTTTCCACCTCCTC+CGG | + | tig0026197:39124-39143 | Msa1427660:CDS | 70.0% | |
| TCTGGTCCCGGAATCGGCGG+TGG | + | tig0026197:39157-39176 | Msa1427660:CDS | 70.0% | |
| GCCTCCGTCGGTAACCCCGC+CGG | + | tig0026197:39016-39035 | Msa1427660:CDS | 75.0% | |
| TCCGGCGGGGTTACCGACGG+AGG | - | tig0026197:39020-39039 | None:intergenic | 75.0% | |
| GGTCCCGGAATCGGCGGTGG+TGG | + | tig0026197:39160-39179 | Msa1427660:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0026197 | gene | 38980 | 39717 | 38980 | ID=Msa1427660;Name=Msa1427660 |
| tig0026197 | mRNA | 38980 | 39717 | 38980 | ID=Msa1427660-mRNA-1;Parent=Msa1427660;Name=Msa1427660-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|245 |
| tig0026197 | exon | 38980 | 39717 | 38980 | ID=Msa1427660-mRNA-1:exon:5548;Parent=Msa1427660-mRNA-1 |
| tig0026197 | CDS | 38980 | 39717 | 38980 | ID=Msa1427660-mRNA-1:cds;Parent=Msa1427660-mRNA-1 |
| Gene Sequence |
| Protein sequence |
