AlfalfaGEDB | Msa0361080

M. sativa cultivar zhongmu-4 / Msa0361080

KEGG: K17279
GO: -
PFAM: PF03134.22

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0361080	XP_003617458.1	97.647	85	2	0	1	85	73	157	8.61e-55	177

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0361080	sp\|Q682H0\|HA22F_ARATH	59.302	86	34	1	1	85	73	158	3.44e-32	112

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0361080	B7FNC9	97.647	85	2	0	1	85	73	157	4.11e-55	177

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0081520	Msa0361080	0.816821	4.539416e-52	-8.615850e-47
Msa0134610	Msa0361080	0.801171	1.021060e-48	-8.615850e-47
Msa0173890	Msa0361080	0.818533	1.865713e-52	-8.615850e-47
Msa0195630	Msa0361080	0.800936	1.140450e-48	-8.615850e-47
Msa0206840	Msa0361080	0.810731	9.965217e-51	-8.615850e-47
Msa0258310	Msa0361080	0.818219	2.197787e-52	-8.615850e-47
Msa0267920	Msa0361080	0.806823	6.823004e-50	-8.615850e-47
Msa0326590	Msa0361080	0.802166	6.381934e-49	-8.615850e-47
Msa0361080	Msa0388770	0.846973	1.551483e-59	-8.615850e-47
Msa0361080	Msa0393440	0.809853	1.540724e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0361080	MtrunA17_Chr5g0443431	97.647	85	2	0	1	85	73	157	7.92e-59	177
Msa0361080	MtrunA17_Chr3g0097141	75.581	86	20	1	1	85	73	158	5.25e-46	144
Msa0361080	MtrunA17_Chr4g0060581	38.750	80	47	1	2	81	82	159	7.39e-11	55.1

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0361080	AT2G42820.1	59.302	86	34	1	1	85	73	158	3.50e-33	112
Msa0361080	AT1G74520.1	36.145	83	51	1	1	83	78	158	3.65e-11	56.2
Msa0361080	AT1G74520.2	36.145	83	51	1	1	83	78	158	3.65e-11	56.2

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Find 18 sgRNAs with CRISPR-Local

Find 20 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
ACATATATGAGAATTATGCA+AGG	0.691799	3_1:+51286038	Msa0361080:CDS
AGAACCTTCTTGTACTCCTC+AGG	0.524082	3_1:-51286103	None:intergenic
AGGACATACGTCAAGAAATT+TGG	0.280571	3_1:+51286058	Msa0361080:CDS
ATCACTCTCTCAAATGCATC+TGG	0.360770	3_1:-51286184	None:intergenic
CAATTTAACCAAGCTGGCAT+GGG	0.541105	3_1:+51286365	Msa0361080:three_prime_UTR
CAGAACACAAGCTTCATGTA+TGG	0.542978	3_1:-51285977	None:intergenic
GAACGTTATATTGATAGATT+TGG	0.323087	3_1:+51286160	Msa0361080:CDS
GAGCGTCAATTTAACCAAGC+TGG	0.586351	3_1:+51286359	Msa0361080:three_prime_UTR
GCTTGTGTTCTGCGTATGGT+TGG	0.576715	3_1:+51285988	Msa0361080:CDS
GTCAAGAAATTTGGTAACTA+TGG	0.297751	3_1:+51286067	Msa0361080:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TGGAAATTACAATTATCCTG+AGG	+	chr3_1:51286087-51286106	Msa0361080:CDS	30.0%
AGGACATACGTCAAGAAATT+TGG	+	chr3_1:51286058-51286077	Msa0361080:CDS	35.0%
CAGAACACAAGCTTCATGTA+TGG	-	chr3_1:51285980-51285999	None:intergenic	40.0%
TTGGTACTGCCAATGTTCAA+TGG	+	chr3_1:51286007-51286026	Msa0361080:CDS	40.0%
TAAGCTGCTCCATTGAACAT+TGG	-	chr3_1:51286019-51286038	None:intergenic	40.0%
TCACTCTCTCAAATGCATCT+GGG	-	chr3_1:51286186-51286205	None:intergenic	40.0%
ATCACTCTCTCAAATGCATC+TGG	-	chr3_1:51286187-51286206	None:intergenic	40.0%
TCAATTTAACCAAGCTGGCA+TGG	+	chr3_1:51286364-51286383	Msa0361080:three_prime_UTR	40.0%
CAATTTAACCAAGCTGGCAT+GGG	+	chr3_1:51286365-51286384	Msa0361080:three_prime_UTR	40.0%
TGAAGCTTGTGTTCTGCGTA+TGG	+	chr3_1:51285984-51286003	Msa0361080:CDS	45.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_1	gene	51285973	51286445	51285973	ID=Msa0361080;Name=Msa0361080
chr3_1	mRNA	51285973	51286445	51285973	ID=Msa0361080-mRNA-1;Parent=Msa0361080;Name=Msa0361080-mRNA-1;_AED=0.12;_eAED=0.12;_QI=10\|1\|1\|1\|1\|1\|2\|89\|85
chr3_1	exon	51285973	51286213	51285973	ID=Msa0361080-mRNA-1:exon:9091;Parent=Msa0361080-mRNA-1
chr3_1	exon	51286330	51286445	51286330	ID=Msa0361080-mRNA-1:exon:9092;Parent=Msa0361080-mRNA-1
chr3_1	five_prime_UTR	51285973	51285982	51285973	ID=Msa0361080-mRNA-1:five_prime_utr;Parent=Msa0361080-mRNA-1
chr3_1	CDS	51285983	51286213	51285983	ID=Msa0361080-mRNA-1:cds;Parent=Msa0361080-mRNA-1
chr3_1	CDS	51286330	51286356	51286330	ID=Msa0361080-mRNA-1:cds;Parent=Msa0361080-mRNA-1
chr3_1	three_prime_UTR	51286357	51286445	51286357	ID=Msa0361080-mRNA-1:three_prime_utr;Parent=Msa0361080-mRNA-1

Gene Sequence	>Msa0361080 ATGAAGCTTGTGTTCTGCGTATGGTTGGTACTGCCAATGTTCAATGGAGCAGCTTACATATATGAGAATTATGCAAGGACATACGTCAAGAAATTTGGTAACTATGGAAATTACAATTATCCTGAGGAGTACAAGAAGGTTCTTCATATGATGACTTTCGATGCAAGAAAAGCAGTTGAACGTTATATTGATAGATTTGGCCCAGATGCATTTGAGAGAGTGATTAGAGCAGCTGAGAAAGAAGCAAAGAAGCATTGA
Protein sequence	>Msa0361080 MKLVFCVWLVLPMFNGAAYIYENYARTYVKKFGNYGNYNYPEEYKKVLHMMTFDARKAVERYIDRFGPDAFERVIRAAEKEAKKH*