Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0384750 | XP_013462091.1 | 91.860 | 172 | 12 | 1 | 1 | 172 | 1 | 170 | 1.20e-103 | 312 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0384750 | A0A072V374 | 91.860 | 172 | 12 | 1 | 1 | 172 | 1 | 170 | 5.74e-104 | 312 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001950 | Msa0384750 | 0.833701 | 4.583948e-56 | -8.615850e-47 |
| Msa0017940 | Msa0384750 | 0.800983 | 1.115437e-48 | -8.615850e-47 |
| Msa0030380 | Msa0384750 | 0.812489 | 4.132941e-51 | -8.615850e-47 |
| Msa0032120 | Msa0384750 | 0.823078 | 1.680904e-53 | -8.615850e-47 |
| Msa0032400 | Msa0384750 | 0.821321 | 4.297298e-53 | -8.615850e-47 |
| Msa0050580 | Msa0384750 | 0.807678 | 4.496091e-50 | -8.615850e-47 |
| Msa0141830 | Msa0384750 | 0.810446 | 1.147837e-50 | -8.615850e-47 |
| Msa0173740 | Msa0384750 | 0.811047 | 8.511564e-51 | -8.615850e-47 |
| Msa0173820 | Msa0384750 | 0.812853 | 3.440537e-51 | -8.615850e-47 |
| Msa0173830 | Msa0384750 | 0.823732 | 1.182386e-53 | -8.615850e-47 |
| Msa0183620 | Msa0384750 | 0.801116 | 1.048150e-48 | -8.615850e-47 |
| Msa0185700 | Msa0384750 | 0.828927 | 6.848814e-55 | -8.615850e-47 |
| Msa0376510 | Msa0384750 | 0.813107 | 3.025875e-51 | -8.615850e-47 |
| Msa0378080 | Msa0384750 | 0.848703 | 5.177246e-60 | -8.615850e-47 |
| Msa0384750 | Msa0395960 | 0.813226 | 2.849457e-51 | -8.615850e-47 |
| Msa0384750 | Msa0425050 | 0.817976 | 2.493510e-52 | -8.615850e-47 |
| Msa0384750 | Msa0468160 | 0.826956 | 2.041215e-54 | -8.615850e-47 |
| Msa0384750 | Msa0470180 | 0.837477 | 5.079068e-57 | -8.615850e-47 |
| Msa0384750 | Msa0518040 | 0.839892 | 1.207536e-57 | -8.615850e-47 |
| Msa0384750 | Msa0522660 | 0.823539 | 1.311669e-53 | -8.615850e-47 |
| Msa0384750 | Msa0546840 | 0.833612 | 4.825810e-56 | -8.615850e-47 |
| Msa0384750 | Msa0581460 | 0.801451 | 8.946814e-49 | -8.615850e-47 |
| Msa0384750 | Msa0590680 | 0.813312 | 2.728492e-51 | -8.615850e-47 |
| Msa0384750 | Msa0621120 | 0.859108 | 5.194448e-63 | -8.615850e-47 |
| Msa0384750 | Msa0669220 | 0.812625 | 3.858184e-51 | -8.615850e-47 |
| Msa0384750 | Msa0677290 | 0.800963 | 1.126213e-48 | -8.615850e-47 |
| Msa0384750 | Msa0734750 | 0.806786 | 6.946896e-50 | -8.615850e-47 |
| Msa0384750 | Msa0813720 | 0.805084 | 1.583424e-49 | -8.615850e-47 |
| Msa0384750 | Msa1171690 | 0.808833 | 2.550252e-50 | -8.615850e-47 |
| Msa0384750 | Msa1188940 | 0.833498 | 5.152722e-56 | -8.615850e-47 |
| Msa0384750 | Msa1243170 | 0.814431 | 1.545727e-51 | -8.615850e-47 |
| Msa0384750 | Msa1284520 | 0.838457 | 2.843398e-57 | -8.615850e-47 |
| Msa0384750 | Msa1324000 | 0.819275 | 1.265090e-52 | -8.615850e-47 |
| Msa0384750 | Msa1382310 | 0.837040 | 6.569852e-57 | -8.615850e-47 |
| Msa0384750 | Msa1398480 | 0.832683 | 8.219886e-56 | -8.615850e-47 |
| Msa0384750 | Msa1447300 | 0.860417 | 2.096327e-63 | -8.615850e-47 |
| Msa0384750 | Msa1449880 | 0.808067 | 3.714792e-50 | -8.615850e-47 |
| Msa0384750 | Msa1453620 | 0.807361 | 5.248676e-50 | -8.615850e-47 |
| Msa0384750 | Msa1460440 | 0.826440 | 2.709568e-54 | -8.615850e-47 |
| Msa0246690 | Msa0384750 | 0.818445 | 1.953200e-52 | -8.615850e-47 |
| Msa0358170 | Msa0384750 | 0.811142 | 8.114941e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0384750 | MtrunA17_Chr3g0141281 | 91.860 | 172 | 12 | 1 | 1 | 172 | 1 | 170 | 1.10e-107 | 312 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0384750 | AT1G48460.1 | 57.143 | 98 | 35 | 3 | 83 | 179 | 71 | 162 | 1.27e-24 | 98.6 |
Find 36 sgRNAs with CRISPR-Local
Find 106 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGATATCAGAAACAGAATTT+TGG | 0.173325 | 3_1:+88056654 | Msa0384750:CDS |
| AGTTCTAGTGTTCCTGTTAA+TGG | 0.210562 | 3_1:+88056898 | Msa0384750:CDS |
| GAGCTCTTACTTATGGGTTT+TGG | 0.226459 | 3_1:+88057038 | Msa0384750:CDS |
| AAGAGGAGAGCTCTTACTTA+TGG | 0.285229 | 3_1:+88057031 | Msa0384750:CDS |
| TTCCATCGTCACATCAGTTT+AGG | 0.286689 | 3_1:-88056447 | None:intergenic |
| GTTCTAGTGTTCCTGTTAAT+GGG | 0.303684 | 3_1:+88056899 | Msa0384750:CDS |
| GAACCATTTCATGGTAAATC+AGG | 0.312758 | 3_1:+88056937 | Msa0384750:CDS |
| TCCATCGTCACATCAGTTTA+GGG | 0.322289 | 3_1:-88056446 | None:intergenic |
| CTACATTTGTTGTGAGTAAA+GGG | 0.340887 | 3_1:+88056389 | Msa0384750:five_prime_UTR |
| TTTATTACTGACACGATGTT+TGG | 0.357578 | 3_1:-88056516 | None:intergenic |
| GCTTCTGATTCCAATGTAAA+TGG | 0.366214 | 3_1:+88056850 | Msa0384750:CDS |
| AATGGGTTGGAACCATTTCA+TGG | 0.370157 | 3_1:+88056928 | Msa0384750:CDS |
| CTTTCGCAGTCACAAGCAAC+TGG | 0.380671 | 3_1:+88056615 | Msa0384750:intron |
| GAACCTGATTTACCATGAAA+TGG | 0.410530 | 3_1:-88056940 | None:intergenic |
| ACTACATTTGTTGTGAGTAA+AGG | 0.411169 | 3_1:+88056388 | Msa0384750:five_prime_UTR |
| AGAGGAGAGCTCTTACTTAT+GGG | 0.413551 | 3_1:+88057032 | Msa0384750:CDS |
| GAGAAGTGAAGTGGTTGAGA+GGG | 0.440340 | 3_1:-88056494 | None:intergenic |
| ACTTCCCTTCTTCTACAGAT+TGG | 0.459140 | 3_1:-88056987 | None:intergenic |
| TTTGATTTCAGCATTCAAAC+AGG | 0.466305 | 3_1:+88056765 | Msa0384750:intron |
| TTCCAATGCACCATTTACAT+TGG | 0.492222 | 3_1:-88056860 | None:intergenic |
| GGAGAAGTGAAGTGGTTGAG+AGG | 0.505328 | 3_1:-88056495 | None:intergenic |
| AAAGATGATATGAATGCGAC+AGG | 0.518252 | 3_1:-88057063 | None:intergenic |
| ATTCTGCCACAGTTCTTCGT+TGG | 0.519550 | 3_1:+88057087 | Msa0384750:CDS |
| ATCTGTAGAAGAAGGGAAGT+TGG | 0.519792 | 3_1:+88056990 | Msa0384750:CDS |
| TCAGTTTAGGGTTCAAGAAG+TGG | 0.524196 | 3_1:-88056434 | None:intergenic |
| CTTCGTTGGCACTGTTGTTG+CGG | 0.536995 | 3_1:+88057101 | Msa0384750:CDS |
| TTCTAGTGTTCCTGTTAATG+GGG | 0.540217 | 3_1:+88056900 | Msa0384750:CDS |
| ACACACCAATCTGTAGAAGA+AGG | 0.540836 | 3_1:+88056982 | Msa0384750:CDS |
| TTCCAATGTAAATGGTGCAT+TGG | 0.552698 | 3_1:+88056858 | Msa0384750:CDS |
| GAGCTCTCCTCTTGTTTGAA+CGG | 0.557951 | 3_1:-88057021 | None:intergenic |
| ATCTGCTCCGTTCAAACAAG+AGG | 0.588809 | 3_1:+88057014 | Msa0384750:CDS |
| CACACCAATCTGTAGAAGAA+GGG | 0.595884 | 3_1:+88056983 | Msa0384750:CDS |
| TCTAGTGTTCCTGTTAATGG+GGG | 0.617974 | 3_1:+88056901 | Msa0384750:CDS |
| CGATGTTTGGAGAAGTGAAG+TGG | 0.648063 | 3_1:-88056503 | None:intergenic |
| ACCCTAAACTGATGTGACGA+TGG | 0.681521 | 3_1:+88056445 | Msa0384750:exon |
| ACAGTGCCAACGAAGAACTG+TGG | 0.710210 | 3_1:-88057093 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTAATGATTTGATTTTAAA+AGG | + | chr3_1:88057129-88057148 | Msa0384750:CDS | 10.0% |
| !!! | TTTAATGATTTGATTTTAAA+AGG | + | chr3_1:88057129-88057148 | Msa0384750:CDS | 10.0% |
| !!! | ATTTATAACAATTTGTTGAA+TGG | - | chr3_1:88056738-88056757 | None:intergenic | 15.0% |
| !!! | ATTTATAACAATTTGTTGAA+TGG | - | chr3_1:88056738-88056757 | None:intergenic | 15.0% |
| !!! | AAATGTACGATTTTTGTTTT+TGG | + | chr3_1:88056693-88056712 | Msa0384750:intron | 20.0% |
| !!! | AATGTACGATTTTTGTTTTT+GGG | + | chr3_1:88056694-88056713 | Msa0384750:intron | 20.0% |
| !!! | ATTAAAGAACCTTCATTTTT+GGG | + | chr3_1:88056790-88056809 | Msa0384750:CDS | 20.0% |
| !!! | AAATGTACGATTTTTGTTTT+TGG | + | chr3_1:88056693-88056712 | Msa0384750:intron | 20.0% |
| !!! | AATGTACGATTTTTGTTTTT+GGG | + | chr3_1:88056694-88056713 | Msa0384750:intron | 20.0% |
| !!! | ATTAAAGAACCTTCATTTTT+GGG | + | chr3_1:88056790-88056809 | Msa0384750:CDS | 20.0% |
| ! | AAGAAGAAAAAAAGTTAGTG+TGG | - | chr3_1:88056595-88056614 | None:intergenic | 25.0% |
| !! | AGATATCAGAAACAGAATTT+TGG | + | chr3_1:88056654-88056673 | Msa0384750:CDS | 25.0% |
| !! | GATATCAGAAACAGAATTTT+GGG | + | chr3_1:88056655-88056674 | Msa0384750:CDS | 25.0% |
| !! | GATTAAAGAACCTTCATTTT+TGG | + | chr3_1:88056789-88056808 | Msa0384750:CDS | 25.0% |
| !!! | TTTTTCAATCCCAAAAATGA+AGG | - | chr3_1:88056802-88056821 | None:intergenic | 25.0% |
| ! | TGGGATTGAAAAAATTTCAA+AGG | + | chr3_1:88056809-88056828 | Msa0384750:CDS | 25.0% |
| ! | AAGAAGAAAAAAAGTTAGTG+TGG | - | chr3_1:88056595-88056614 | None:intergenic | 25.0% |
| !! | AGATATCAGAAACAGAATTT+TGG | + | chr3_1:88056654-88056673 | Msa0384750:CDS | 25.0% |
| !! | GATATCAGAAACAGAATTTT+GGG | + | chr3_1:88056655-88056674 | Msa0384750:CDS | 25.0% |
| !! | GATTAAAGAACCTTCATTTT+TGG | + | chr3_1:88056789-88056808 | Msa0384750:CDS | 25.0% |
| !!! | TTTTTCAATCCCAAAAATGA+AGG | - | chr3_1:88056802-88056821 | None:intergenic | 25.0% |
| ! | TGGGATTGAAAAAATTTCAA+AGG | + | chr3_1:88056809-88056828 | Msa0384750:CDS | 25.0% |
| !! | ACTACATTTGTTGTGAGTAA+AGG | + | chr3_1:88056388-88056407 | Msa0384750:five_prime_UTR | 30.0% |
| !! | CTACATTTGTTGTGAGTAAA+GGG | + | chr3_1:88056389-88056408 | Msa0384750:five_prime_UTR | 30.0% |
| TTTATTACTGACACGATGTT+TGG | - | chr3_1:88056519-88056538 | None:intergenic | 30.0% | |
| ! | TTTGATTTCAGCATTCAAAC+AGG | + | chr3_1:88056765-88056784 | Msa0384750:intron | 30.0% |
| !! | ACTACATTTGTTGTGAGTAA+AGG | + | chr3_1:88056388-88056407 | Msa0384750:five_prime_UTR | 30.0% |
| !! | CTACATTTGTTGTGAGTAAA+GGG | + | chr3_1:88056389-88056408 | Msa0384750:five_prime_UTR | 30.0% |
| TTTATTACTGACACGATGTT+TGG | - | chr3_1:88056519-88056538 | None:intergenic | 30.0% | |
| ! | TTTGATTTCAGCATTCAAAC+AGG | + | chr3_1:88056765-88056784 | Msa0384750:intron | 30.0% |
| ! | TGTTGTGAGTAAAGGGTTTT+AGG | + | chr3_1:88056396-88056415 | Msa0384750:five_prime_UTR | 35.0% |
| GCTTCTGATTCCAATGTAAA+TGG | + | chr3_1:88056850-88056869 | Msa0384750:CDS | 35.0% | |
| TTCCAATGTAAATGGTGCAT+TGG | + | chr3_1:88056858-88056877 | Msa0384750:CDS | 35.0% | |
| TTCCAATGCACCATTTACAT+TGG | - | chr3_1:88056863-88056882 | None:intergenic | 35.0% | |
| ! | AGTTCTAGTGTTCCTGTTAA+TGG | + | chr3_1:88056898-88056917 | Msa0384750:CDS | 35.0% |
| GTTCTAGTGTTCCTGTTAAT+GGG | + | chr3_1:88056899-88056918 | Msa0384750:CDS | 35.0% | |
| TTCTAGTGTTCCTGTTAATG+GGG | + | chr3_1:88056900-88056919 | Msa0384750:CDS | 35.0% | |
| CTGTTAATGGGGGTTATAAT+GGG | + | chr3_1:88056911-88056930 | Msa0384750:CDS | 35.0% | |
| GAACCATTTCATGGTAAATC+AGG | + | chr3_1:88056937-88056956 | Msa0384750:CDS | 35.0% | |
| GAACCTGATTTACCATGAAA+TGG | - | chr3_1:88056943-88056962 | None:intergenic | 35.0% | |
| ! | TCAGGTTCTGTCTCTTTTTA+TGG | + | chr3_1:88056955-88056974 | Msa0384750:CDS | 35.0% |
| ! | CAGGTTCTGTCTCTTTTTAT+GGG | + | chr3_1:88056956-88056975 | Msa0384750:CDS | 35.0% |
| AAAGATGATATGAATGCGAC+AGG | - | chr3_1:88057066-88057085 | None:intergenic | 35.0% | |
| ! | TGTTGTGAGTAAAGGGTTTT+AGG | + | chr3_1:88056396-88056415 | Msa0384750:five_prime_UTR | 35.0% |
| GCTTCTGATTCCAATGTAAA+TGG | + | chr3_1:88056850-88056869 | Msa0384750:CDS | 35.0% | |
| TTCCAATGTAAATGGTGCAT+TGG | + | chr3_1:88056858-88056877 | Msa0384750:CDS | 35.0% | |
| TTCCAATGCACCATTTACAT+TGG | - | chr3_1:88056863-88056882 | None:intergenic | 35.0% | |
| ! | AGTTCTAGTGTTCCTGTTAA+TGG | + | chr3_1:88056898-88056917 | Msa0384750:CDS | 35.0% |
| GTTCTAGTGTTCCTGTTAAT+GGG | + | chr3_1:88056899-88056918 | Msa0384750:CDS | 35.0% | |
| TTCTAGTGTTCCTGTTAATG+GGG | + | chr3_1:88056900-88056919 | Msa0384750:CDS | 35.0% | |
| CTGTTAATGGGGGTTATAAT+GGG | + | chr3_1:88056911-88056930 | Msa0384750:CDS | 35.0% | |
| GAACCATTTCATGGTAAATC+AGG | + | chr3_1:88056937-88056956 | Msa0384750:CDS | 35.0% | |
| GAACCTGATTTACCATGAAA+TGG | - | chr3_1:88056943-88056962 | None:intergenic | 35.0% | |
| ! | TCAGGTTCTGTCTCTTTTTA+TGG | + | chr3_1:88056955-88056974 | Msa0384750:CDS | 35.0% |
| ! | CAGGTTCTGTCTCTTTTTAT+GGG | + | chr3_1:88056956-88056975 | Msa0384750:CDS | 35.0% |
| AAAGATGATATGAATGCGAC+AGG | - | chr3_1:88057066-88057085 | None:intergenic | 35.0% | |
| ! | TCAGTTTAGGGTTCAAGAAG+TGG | - | chr3_1:88056437-88056456 | None:intergenic | 40.0% |
| TCCATCGTCACATCAGTTTA+GGG | - | chr3_1:88056449-88056468 | None:intergenic | 40.0% | |
| TTCCATCGTCACATCAGTTT+AGG | - | chr3_1:88056450-88056469 | None:intergenic | 40.0% | |
| TCTAGTGTTCCTGTTAATGG+GGG | + | chr3_1:88056901-88056920 | Msa0384750:CDS | 40.0% | |
| CCATTATAACCCCCATTAAC+AGG | - | chr3_1:88056913-88056932 | None:intergenic | 40.0% | |
| CCTGTTAATGGGGGTTATAA+TGG | + | chr3_1:88056910-88056929 | Msa0384750:CDS | 40.0% | |
| !! | TAATGGGGGTTATAATGGGT+TGG | + | chr3_1:88056915-88056934 | Msa0384750:CDS | 40.0% |
| !! | AATGGGTTGGAACCATTTCA+TGG | + | chr3_1:88056928-88056947 | Msa0384750:CDS | 40.0% |
| ACACACCAATCTGTAGAAGA+AGG | + | chr3_1:88056982-88057001 | Msa0384750:CDS | 40.0% | |
| CACACCAATCTGTAGAAGAA+GGG | + | chr3_1:88056983-88057002 | Msa0384750:CDS | 40.0% | |
| ACTTCCCTTCTTCTACAGAT+TGG | - | chr3_1:88056990-88057009 | None:intergenic | 40.0% | |
| ATCTGTAGAAGAAGGGAAGT+TGG | + | chr3_1:88056990-88057009 | Msa0384750:CDS | 40.0% | |
| AAGAGGAGAGCTCTTACTTA+TGG | + | chr3_1:88057031-88057050 | Msa0384750:CDS | 40.0% | |
| AGAGGAGAGCTCTTACTTAT+GGG | + | chr3_1:88057032-88057051 | Msa0384750:CDS | 40.0% | |
| ! | GAGCTCTTACTTATGGGTTT+TGG | + | chr3_1:88057038-88057057 | Msa0384750:CDS | 40.0% |
| ! | TCAGTTTAGGGTTCAAGAAG+TGG | - | chr3_1:88056437-88056456 | None:intergenic | 40.0% |
| TCCATCGTCACATCAGTTTA+GGG | - | chr3_1:88056449-88056468 | None:intergenic | 40.0% | |
| TTCCATCGTCACATCAGTTT+AGG | - | chr3_1:88056450-88056469 | None:intergenic | 40.0% | |
| TCTAGTGTTCCTGTTAATGG+GGG | + | chr3_1:88056901-88056920 | Msa0384750:CDS | 40.0% | |
| CCATTATAACCCCCATTAAC+AGG | - | chr3_1:88056913-88056932 | None:intergenic | 40.0% | |
| CCTGTTAATGGGGGTTATAA+TGG | + | chr3_1:88056910-88056929 | Msa0384750:CDS | 40.0% | |
| !! | TAATGGGGGTTATAATGGGT+TGG | + | chr3_1:88056915-88056934 | Msa0384750:CDS | 40.0% |
| !! | AATGGGTTGGAACCATTTCA+TGG | + | chr3_1:88056928-88056947 | Msa0384750:CDS | 40.0% |
| ACACACCAATCTGTAGAAGA+AGG | + | chr3_1:88056982-88057001 | Msa0384750:CDS | 40.0% | |
| CACACCAATCTGTAGAAGAA+GGG | + | chr3_1:88056983-88057002 | Msa0384750:CDS | 40.0% | |
| ACTTCCCTTCTTCTACAGAT+TGG | - | chr3_1:88056990-88057009 | None:intergenic | 40.0% | |
| ATCTGTAGAAGAAGGGAAGT+TGG | + | chr3_1:88056990-88057009 | Msa0384750:CDS | 40.0% | |
| AAGAGGAGAGCTCTTACTTA+TGG | + | chr3_1:88057031-88057050 | Msa0384750:CDS | 40.0% | |
| AGAGGAGAGCTCTTACTTAT+GGG | + | chr3_1:88057032-88057051 | Msa0384750:CDS | 40.0% | |
| ! | GAGCTCTTACTTATGGGTTT+TGG | + | chr3_1:88057038-88057057 | Msa0384750:CDS | 40.0% |
| ACCCTAAACTGATGTGACGA+TGG | + | chr3_1:88056445-88056464 | Msa0384750:exon | 45.0% | |
| GAGAAGTGAAGTGGTTGAGA+GGG | - | chr3_1:88056497-88056516 | None:intergenic | 45.0% | |
| CGATGTTTGGAGAAGTGAAG+TGG | - | chr3_1:88056506-88056525 | None:intergenic | 45.0% | |
| ATCTGCTCCGTTCAAACAAG+AGG | + | chr3_1:88057014-88057033 | Msa0384750:CDS | 45.0% | |
| ! | GAGCTCTCCTCTTGTTTGAA+CGG | - | chr3_1:88057024-88057043 | None:intergenic | 45.0% |
| ATTCTGCCACAGTTCTTCGT+TGG | + | chr3_1:88057087-88057106 | Msa0384750:CDS | 45.0% | |
| ACCCTAAACTGATGTGACGA+TGG | + | chr3_1:88056445-88056464 | Msa0384750:exon | 45.0% | |
| GAGAAGTGAAGTGGTTGAGA+GGG | - | chr3_1:88056497-88056516 | None:intergenic | 45.0% | |
| CGATGTTTGGAGAAGTGAAG+TGG | - | chr3_1:88056506-88056525 | None:intergenic | 45.0% | |
| ATCTGCTCCGTTCAAACAAG+AGG | + | chr3_1:88057014-88057033 | Msa0384750:CDS | 45.0% | |
| ! | GAGCTCTCCTCTTGTTTGAA+CGG | - | chr3_1:88057024-88057043 | None:intergenic | 45.0% |
| ATTCTGCCACAGTTCTTCGT+TGG | + | chr3_1:88057087-88057106 | Msa0384750:CDS | 45.0% | |
| GGAGAAGTGAAGTGGTTGAG+AGG | - | chr3_1:88056498-88056517 | None:intergenic | 50.0% | |
| CTTTCGCAGTCACAAGCAAC+TGG | + | chr3_1:88056615-88056634 | Msa0384750:intron | 50.0% | |
| ACAGTGCCAACGAAGAACTG+TGG | - | chr3_1:88057096-88057115 | None:intergenic | 50.0% | |
| CTTCGTTGGCACTGTTGTTG+CGG | + | chr3_1:88057101-88057120 | Msa0384750:CDS | 50.0% | |
| GGAGAAGTGAAGTGGTTGAG+AGG | - | chr3_1:88056498-88056517 | None:intergenic | 50.0% | |
| CTTTCGCAGTCACAAGCAAC+TGG | + | chr3_1:88056615-88056634 | Msa0384750:intron | 50.0% | |
| ACAGTGCCAACGAAGAACTG+TGG | - | chr3_1:88057096-88057115 | None:intergenic | 50.0% | |
| CTTCGTTGGCACTGTTGTTG+CGG | + | chr3_1:88057101-88057120 | Msa0384750:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 88056382 | 88057191 | 88056382 | ID=Msa0384750;Name=Msa0384750 |
| chr3_1 | mRNA | 88056382 | 88057191 | 88056382 | ID=Msa0384750-mRNA-1;Parent=Msa0384750;Name=Msa0384750-mRNA-1;_AED=0.14;_eAED=0.14;_QI=82|1|0.66|1|1|1|3|0|183 |
| chr3_1 | exon | 88056382 | 88056526 | 88056382 | ID=Msa0384750-mRNA-1:exon:23663;Parent=Msa0384750-mRNA-1 |
| chr3_1 | exon | 88056624 | 88056696 | 88056624 | ID=Msa0384750-mRNA-1:exon:23664;Parent=Msa0384750-mRNA-1 |
| chr3_1 | exon | 88056776 | 88057191 | 88056776 | ID=Msa0384750-mRNA-1:exon:23665;Parent=Msa0384750-mRNA-1 |
| chr3_1 | five_prime_UTR | 88056382 | 88056463 | 88056382 | ID=Msa0384750-mRNA-1:five_prime_utr;Parent=Msa0384750-mRNA-1 |
| chr3_1 | CDS | 88056464 | 88056526 | 88056464 | ID=Msa0384750-mRNA-1:cds;Parent=Msa0384750-mRNA-1 |
| chr3_1 | CDS | 88056624 | 88056696 | 88056624 | ID=Msa0384750-mRNA-1:cds;Parent=Msa0384750-mRNA-1 |
| chr3_1 | CDS | 88056776 | 88057191 | 88056776 | ID=Msa0384750-mRNA-1:cds;Parent=Msa0384750-mRNA-1 |
| Gene Sequence |
| Protein sequence |
