AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0017940

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0017940 MtrunA17_Chr1g0152151 99.155 592 4 1 1 592 1 591 0.0 1163
Msa0017940 MtrunA17_Chr1g0152141 98.649 592 7 1 1 592 1 591 0.0 1157
Msa0017940 MtrunA17_Chr5g0421251 67.470 498 155 1 21 518 17 507 0.0 682
Msa0017940 MtrunA17_Chr4g0028601 51.024 586 281 5 1 584 1 582 0.0 545
Msa0017940 MtrunA17_Chr4g0043731 47.681 539 276 5 41 577 34 568 4.21e-170 495
Msa0017940 MtrunA17_Chr1g0196761 45.548 584 298 6 8 586 5 573 3.27e-168 490
Msa0017940 MtrunA17_Chr1g0196751 46.679 527 276 3 48 573 34 556 7.43e-163 477
Msa0017940 MtrunA17_Chr8g0342341 43.376 551 302 5 42 586 29 575 4.00e-150 444
Msa0017940 MtrunA17_Chr5g0421241 54.217 83 21 2 525 591 3 84 3.54e-19 82.4
Msa0017940 MtrunA17_Chr5g0440381 23.427 572 328 22 65 591 30 536 1.70e-11 67.0
Msa0017940 MtrunA17_Chr7g0241881 36.434 129 74 3 66 192 26 148 5.13e-11 65.5
Msa0017940 MtrunA17_Chr7g0272821 37.273 110 63 2 66 173 26 131 8.01e-11 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0017940 AT1G55490.5 89.576 566 56 2 26 591 37 599 0.0 1009
Msa0017940 AT1G55490.1 89.576 566 56 2 26 591 37 599 0.0 1009
Msa0017940 AT1G55490.3 89.576 566 56 2 26 591 37 599 0.0 1009
Msa0017940 AT1G55490.4 89.576 566 56 2 26 591 37 599 0.0 1009
Msa0017940 AT1G55490.2 89.576 566 56 2 26 591 37 599 0.0 1009
Msa0017940 AT3G13470.1 90.270 555 53 1 37 591 42 595 0.0 1002
Msa0017940 AT5G56500.2 88.475 564 62 3 30 592 36 597 0.0 993
Msa0017940 AT5G56500.1 88.475 564 62 3 30 592 36 597 0.0 993
Msa0017940 AT1G26230.1 66.841 573 189 1 13 584 4 576 0.0 788
Msa0017940 AT1G26230.4 68.786 519 162 0 66 584 6 524 0.0 749
Msa0017940 AT1G26230.3 69.126 515 159 0 70 584 2 516 0.0 746
Msa0017940 AT1G26230.2 65.422 509 175 1 13 520 4 512 0.0 679
Msa0017940 AT1G26230.5 64.920 439 153 1 13 450 4 442 0.0 582
Msa0017940 AT2G28000.1 51.397 537 256 4 37 572 37 569 0.0 529
Msa0017940 AT3G23990.1 45.629 572 294 5 8 578 5 560 3.01e-167 488
Msa0017940 AT2G33210.1 46.073 573 289 7 10 579 7 562 4.46e-167 488
Msa0017940 AT2G33210.2 45.899 573 285 8 10 579 7 557 2.79e-163 478
Msa0017940 AT3G13860.1 46.168 548 284 6 48 592 33 572 1.32e-156 461
Msa0017940 AT5G18820.1 47.681 539 275 6 44 579 31 565 1.00e-155 459
Msa0017940 AT5G18820.2 46.943 458 239 4 125 579 3 459 1.23e-127 383
Msa0017940 AT5G18820.3 45.714 385 205 3 44 427 31 412 7.05e-103 318
Msa0017940 AT3G11830.2 23.285 554 309 21 65 566 30 519 9.10e-12 68.2
Msa0017940 AT3G11830.1 23.201 556 309 21 65 566 30 521 2.20e-11 67.0

Find 190 sgRNAs with CRISPR-Local

Find 975 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCTCTGCAATTATCAAAAT+AGG 0.166829 1_1:-29988293 None:intergenic
TGGCCATGGCGGAGACTTTA+AGG 0.205297 1_1:-29985623 None:intergenic
AACTACTACCTCTGTTGTTT+TGG 0.233024 1_1:+29986431 Msa0017940:CDS
TGAGAATATTGGTGCTAAAT+TGG 0.233906 1_1:+29986365 Msa0017940:CDS
CTTGAGCTAATAATCGAAAA+AGG 0.257378 1_1:+29991161 Msa0017940:three_prime_UTR
CTCGCTTTGTAACTGCTTCT+TGG 0.266078 1_1:-29988698 None:intergenic
GCACTTAAGGCTCCTGGATT+TGG 0.266390 1_1:+29988380 Msa0017940:CDS
AACTATTGTGGTTGTATCTT+TGG 0.272759 1_1:-29988661 None:intergenic
AATCTATAAATCACCTTTGT+AGG 0.273262 1_1:-29989902 None:intergenic
GGCTAGGGTTTAAGAGGATT+TGG 0.287170 1_1:-29976942 None:intergenic
GAAGTGGCGGCTGCTTAAAA+TGG 0.296002 1_1:+29991010 Msa0017940:exon
AAGAGAGGGAAACCTCTATT+TGG 0.307722 1_1:-29988737 None:intergenic
GGTTTAAGAGGATTTGGTTT+TGG 0.307959 1_1:-29976936 None:intergenic
TTTAAGGTTCCGACTCTTCC+TGG 0.311790 1_1:-29985607 None:intergenic
TGGTGGTGTGGCTGTAATTC+AGG 0.336881 1_1:+29989085 Msa0017940:CDS
AATGGTGGCTAGGGTTTAAG+AGG 0.350032 1_1:-29976948 None:intergenic
ACACCATCATTAACAATCTT+AGG 0.351092 1_1:-29985868 None:intergenic
TCGCTTTGTAACTGCTTCTT+GGG 0.358585 1_1:-29988697 None:intergenic
GGCCGCCAAGACAAATGATT+TGG 0.362795 1_1:+29986398 Msa0017940:CDS
TGTGAACAAGCTTGCAGATT+TGG 0.366191 1_1:+29985786 Msa0017940:CDS
ATGCCATGGTTGTGTGGAAT+TGG 0.367161 1_1:-29985485 None:intergenic
CAATAAGAAACACACCTCTT+TGG 0.381950 1_1:-29985899 None:intergenic
CCTCTGCAATTATCAAAATA+GGG 0.385162 1_1:-29988292 None:intergenic
TTCCGATGTGATACACAATC+TGG 0.387303 1_1:+29991056 Msa0017940:three_prime_UTR
CTGTGTTGTTGTTGAGATAA+AGG 0.387501 1_1:+29990568 Msa0017940:CDS
GTTGTTCTTGAGAGCAAGTA+TGG 0.388399 1_1:+29985841 Msa0017940:CDS
CATAAATAGAGAAATTGTTA+TGG 0.388875 1_1:-29991388 None:intergenic
TGGTGTTACTCTTGGTCCTA+AGG 0.393067 1_1:+29985810 Msa0017940:CDS
GAGGGTATTGTAGTTGGTGG+TGG 0.394415 1_1:+29989381 Msa0017940:CDS
ACTGAAGATTGCAGCACTTA+AGG 0.394593 1_1:+29988367 Msa0017940:CDS
CTTGTTGTGAACAAACTTAG+AGG 0.403832 1_1:+29988341 Msa0017940:CDS
GAATGGAGGATGAAACTATT+AGG 0.407847 1_1:-29976885 None:intergenic
GGCAACCCTATGGACAATTC+AGG 0.408645 1_1:+29990611 Msa0017940:CDS
TCCAACGACGATACGAGATA+TGG 0.410275 1_1:+29989824 Msa0017940:CDS
ACAAATTAAGAACCAAATAG+AGG 0.412098 1_1:+29988725 Msa0017940:CDS
AGAGAAATTGTTATGGGAAC+GGG 0.412312 1_1:-29991381 None:intergenic
GGATATTGAACAAGAAGCTT+TGG 0.413311 1_1:+29988313 Msa0017940:CDS
AAAGCTGGGAATGAGGTTCT+AGG 0.414128 1_1:+29988615 Msa0017940:CDS
AACTATTCTATACATGTTCC+TGG 0.414257 1_1:+29991223 Msa0017940:three_prime_UTR
TCTGTTGAGGATCAATTAGT+TGG 0.426950 1_1:-29991321 None:intergenic
GAGGATCCGGTTGAGAATAT+TGG 0.429757 1_1:+29986354 Msa0017940:CDS
GATGATATTGCCATCTTGAC+AGG 0.432753 1_1:+29988425 Msa0017940:CDS
GGCCTTAGCTTAGACAAAGC+TGG 0.436997 1_1:+29988600 Msa0017940:CDS
GTTGAGTAAGGTTGGTAGAA+AGG 0.446649 1_1:+29987963 Msa0017940:CDS
ATAAATAGAGAAATTGTTAT+GGG 0.447724 1_1:-29991387 None:intergenic
TTGCGTTCAAAAGGTGGAGT+TGG 0.448665 1_1:+29986332 Msa0017940:intron
GATTTGGTTGGTGTTACTCT+TGG 0.449977 1_1:+29985802 Msa0017940:CDS
CTCACTGTCTGTAACAAAGT+AGG 0.452915 1_1:-29988073 None:intergenic
ATTGCAGCACTTAAGGCTCC+TGG 0.453971 1_1:+29988374 Msa0017940:CDS
ACAGGAGTCAGTCCTACATT+TGG 0.454551 1_1:-29991105 None:intergenic
CGTTCAAAAGGTGGAGTTGG+AGG 0.454662 1_1:+29986335 Msa0017940:intron
CCAGGTGGTTAGATGTTGCT+TGG 0.456438 1_1:+29990505 Msa0017940:intron
AAGTTAAAACTCAAAGGAAT+TGG 0.456754 1_1:+29991275 Msa0017940:three_prime_UTR
GCCTGCCAAATCATTTGTCT+TGG 0.460705 1_1:-29986403 None:intergenic
TCTTATTGCAGAAGGTGTTA+AGG 0.461521 1_1:+29986461 Msa0017940:CDS
TGGTGCTAAATTGGTTAGAC+AGG 0.463771 1_1:+29986374 Msa0017940:CDS
AAATGGAAGCGGAGGAAGAG+AGG 0.465288 1_1:-29985530 None:intergenic
AGAAGATGGGAATGAAGAAA+TGG 0.465700 1_1:-29985547 None:intergenic
TTGTTGCTCGGAATTGAGAA+TGG 0.466091 1_1:-29976902 None:intergenic
TTGCCAACAGGTGCAGCCTC+AGG 0.467059 1_1:-29990593 None:intergenic
AAAGGTGGAGTTGGAGGATC+CGG 0.467134 1_1:+29986341 Msa0017940:intron
GAAAGGATTGCAAAACTGTC+TGG 0.467785 1_1:+29989065 Msa0017940:CDS
TGCCAAATCATTTGTCTTGG+CGG 0.470595 1_1:-29986400 None:intergenic
GAGTTGCATTTCAACAAAGA+TGG 0.471240 1_1:+29985648 Msa0017940:CDS
TTAGCACCAATATTCTCAAC+CGG 0.473308 1_1:-29986360 None:intergenic
AGGGTATTGTAGTTGGTGGT+GGG 0.474079 1_1:+29989382 Msa0017940:CDS
GGAGGATGAAACTATTAGGT+AGG 0.475875 1_1:-29976881 None:intergenic
TTGAGAGAAAATGGTGGCTA+GGG 0.476871 1_1:-29976957 None:intergenic
GCCTTAGCTTAGACAAAGCT+GGG 0.479147 1_1:+29988601 Msa0017940:CDS
TATGAAGATTTGATGTCTGC+TGG 0.479231 1_1:+29989869 Msa0017940:CDS
TTTGTTGAAATGCAACTCCT+TGG 0.479417 1_1:-29985643 None:intergenic
GATAGCTGAGGCGTTGAGTA+AGG 0.484566 1_1:+29987951 Msa0017940:CDS
AAAGATACAACCACAATAGT+TGG 0.489610 1_1:+29988663 Msa0017940:CDS
GCAGGTTGAGGATAGTGAAT+TGG 0.491700 1_1:+29987879 Msa0017940:intron
TGCAAAACTGTCTGGTGGTG+TGG 0.492146 1_1:+29989073 Msa0017940:CDS
TCGATAAAAGTAAAATATGC+TGG 0.492282 1_1:-29991201 None:intergenic
GTTAATAAGATCCCTTGCAT+TGG 0.496312 1_1:-29988240 None:intergenic
TTAATTTCAGAGGGTAGCTA+AGG 0.496676 1_1:-29989677 None:intergenic
TGGCAATATCATCAAGGTAC+TGG 0.496736 1_1:-29988415 None:intergenic
ACTCTAGTTCGTTACACTAC+AGG 0.496929 1_1:-29991123 None:intergenic
CTCTTGCGTTCTCCAAATCC+AGG 0.496984 1_1:-29988392 None:intergenic
TTTCTGCGGGTGGAAGAAGA+TGG 0.498743 1_1:-29985561 None:intergenic
CCTGGAGAGAGCGACGGTAC+TGG 0.505757 1_1:-29985589 None:intergenic
GTCAGTCCTACATTTGGACT+TGG 0.506256 1_1:-29991099 None:intergenic
GGTGTTACTCTTGGTCCTAA+GGG 0.507915 1_1:+29985811 Msa0017940:CDS
CCAGTACCGTCGCTCTCTCC+AGG 0.507934 1_1:+29985589 Msa0017940:CDS
TGCCATGGTTGTGTGGAATT+GGG 0.508986 1_1:-29985484 None:intergenic
TTTGCTCAGACTTGCATCAA+AGG 0.510939 1_1:+29989410 Msa0017940:CDS
TGCAGAACAAGATTATGAAA+AGG 0.511288 1_1:+29989031 Msa0017940:CDS
GCCAAGACAAATGATTTGGC+AGG 0.513756 1_1:+29986402 Msa0017940:CDS
TTGTCCATAGGGTTGCCAAC+AGG 0.519465 1_1:-29990605 None:intergenic
TTGAGTAAGGTTGGTAGAAA+GGG 0.519613 1_1:+29987964 Msa0017940:CDS
AAGTGGCGGCTGCTTAAAAT+GGG 0.519821 1_1:+29991011 Msa0017940:three_prime_UTR
GAGGATGAAACTATTAGGTA+GGG 0.520347 1_1:-29976880 None:intergenic
ACAAATGATTTGGCAGGCGA+TGG 0.521838 1_1:+29986408 Msa0017940:CDS
TCCATATCTCGTATCGTCGT+TGG 0.522924 1_1:-29989825 None:intergenic
TCTCCTAAGATTGTTAATGA+TGG 0.522934 1_1:+29985865 Msa0017940:CDS
ATTGAGAGAAAATGGTGGCT+AGG 0.523158 1_1:-29976958 None:intergenic
CTTAGACAAAGCTGGGAATG+AGG 0.523660 1_1:+29988608 Msa0017940:CDS
TCACTGTCTGTAACAAAGTA+GGG 0.525001 1_1:-29988072 None:intergenic
GGTTCTAGGCACTGCGGCCA+AGG 0.525331 1_1:+29988629 Msa0017940:CDS
TCCCAGCTTTGTCTAAGCTA+AGG 0.526799 1_1:-29988602 None:intergenic
CCTTTAGGCCGCTGTTGAAG+AGG 0.527246 1_1:+29989362 Msa0017940:intron
TTCTGCGGGTGGAAGAAGAT+GGG 0.529678 1_1:-29985560 None:intergenic
TAAAGTCTCCGCCATGGCCA+AGG 0.533355 1_1:+29985626 Msa0017940:CDS
ATCTTTGGTGAGCACCACCT+TGG 0.533468 1_1:-29988646 None:intergenic
AGAACAACATTCCTTCCCTT+AGG 0.535555 1_1:-29985826 None:intergenic
ATACCACGTGTGATAAGCAC+AGG 0.537355 1_1:-29986611 None:intergenic
GTTGAAGAGGGTATTGTAGT+TGG 0.538398 1_1:+29989375 Msa0017940:CDS
TGGGAATGAAGAAATGGAAG+CGG 0.541881 1_1:-29985541 None:intergenic
AAAAGGAGAAGTTGAACGAA+AGG 0.543334 1_1:+29989048 Msa0017940:CDS
GATGTGGCAGCAGTTAGTGC+AGG 0.549028 1_1:+29987904 Msa0017940:CDS
TGCACCTGTTGGCAACCCTA+TGG 0.550758 1_1:+29990601 Msa0017940:CDS
TTATAAACCTCCTGTCAAGA+TGG 0.550939 1_1:-29988435 None:intergenic
TAGAGAAATTGTTATGGGAA+CGG 0.553391 1_1:-29991382 None:intergenic
CTTTAGGCCGCTGTTGAAGA+GGG 0.553599 1_1:+29989363 Msa0017940:intron
GCTCAAGGTCTTATTGCAGA+AGG 0.554354 1_1:+29986453 Msa0017940:CDS
ACTTCCATCACCAACTATTG+TGG 0.557957 1_1:-29988673 None:intergenic
CTAGAGGACGCAATTAGAAA+CGG 0.558599 1_1:+29988266 Msa0017940:CDS
GAACCTGAGGCTGCACCTGT+TGG 0.558717 1_1:+29990590 Msa0017940:CDS
AACAAGCTTGCAGATTTGGT+TGG 0.565866 1_1:+29985790 Msa0017940:CDS
AATAGAAAGTTAAAACTCAA+AGG 0.569335 1_1:+29991269 Msa0017940:three_prime_UTR
AAACAATCTGTATGTTGTTG+AGG 0.570389 1_1:+29988020 Msa0017940:CDS
AACAATCTGTATGTTGTTGA+GGG 0.571719 1_1:+29988021 Msa0017940:CDS
AAAGGGTGTCGTTACACTTG+AGG 0.572247 1_1:+29987981 Msa0017940:CDS
GAAGAGGGTATTGTAGTTGG+TGG 0.573873 1_1:+29989378 Msa0017940:CDS
TATGGATATAATGCTGCCAC+TGG 0.574388 1_1:+29989842 Msa0017940:CDS
ACTTAAACTAATGTCAAAAG+AGG 0.575994 1_1:+29986664 Msa0017940:CDS
TTCCGCTATCAAGAAACTCC+AGG 0.579355 1_1:+29985671 Msa0017940:CDS
GCTGAGGCGTTGAGTAAGGT+TGG 0.581310 1_1:+29987955 Msa0017940:CDS
ACATACCTGAATTGTCCATA+GGG 0.583522 1_1:-29990616 None:intergenic
TGGCAGTGTTGTTAGTGAGA+AGG 0.588442 1_1:+29989722 Msa0017940:CDS
AATGTTAGTTCATTCTGTTG+AGG 0.591770 1_1:-29991334 None:intergenic
TCTAGGCACTGCGGCCAAGG+TGG 0.592690 1_1:+29988632 Msa0017940:CDS
TAGGATTCGGTATGTAGAAG+TGG 0.593025 1_1:+29990994 Msa0017940:intron
TGCTAAATTGGTTAGACAGG+CGG 0.595682 1_1:+29986377 Msa0017940:CDS
TTACTCTTGGTCCTAAGGGA+AGG 0.596314 1_1:+29985815 Msa0017940:CDS
TACATACCTGAATTGTCCAT+AGG 0.599446 1_1:-29990617 None:intergenic
ACAACCACAATAGTTGGTGA+TGG 0.599514 1_1:+29988669 Msa0017940:CDS
TTGGTAGTTACTGCGATCGG+CGG 0.601111 1_1:+29991294 Msa0017940:three_prime_UTR
GGGTGTCGTTACACTTGAGG+AGG 0.602205 1_1:+29987984 Msa0017940:CDS
GCAGGGAACAATCATGAGGT+AGG 0.602361 1_1:+29987922 Msa0017940:CDS
CACCTGGAGTTTCTTGATAG+CGG 0.605493 1_1:-29985673 None:intergenic
ATGAAGATTTGATGTCTGCT+GGG 0.605666 1_1:+29989870 Msa0017940:CDS
TCAAGATGGCAATATCATCA+AGG 0.606055 1_1:-29988421 None:intergenic
AGGATGAAACTATTAGGTAG+GGG 0.606720 1_1:-29976879 None:intergenic
CTCCCAATTCCACACAACCA+TGG 0.606820 1_1:+29985482 Msa0017940:exon
GTAGGACCAAGTCCAAATGT+AGG 0.607962 1_1:+29991093 Msa0017940:three_prime_UTR
GCTCAGACTTGCATCAAAGG+TGG 0.608186 1_1:+29989413 Msa0017940:CDS
TCGCTCTCTCCAGGAAGAGT+CGG 0.608851 1_1:+29985598 Msa0017940:CDS
GATATTGCCATCTTGACAGG+AGG 0.609386 1_1:+29988428 Msa0017940:CDS
TAATTTCAGAGGGTAGCTAA+GGG 0.611417 1_1:-29989676 None:intergenic
TACAATACCCTCTTCAACAG+CGG 0.611736 1_1:-29989370 None:intergenic
TCGTTACACTTGAGGAGGGA+AGG 0.613492 1_1:+29987989 Msa0017940:CDS
CTTGCAGTTCTCAAATTCAA+CGG 0.614107 1_1:-29988103 None:intergenic
ACAAACTGAGACAGAACTCA+AGG 0.620054 1_1:+29989227 Msa0017940:CDS
GAATGAAGAAATGGAAGCGG+AGG 0.624472 1_1:-29985538 None:intergenic
AGGTACTGTTATCAGAGAGG+AGG 0.632407 1_1:+29988575 Msa0017940:intron
GAAATGCAACTCCTTGGCCA+TGG 0.632735 1_1:-29985637 None:intergenic
CAAATCTTCATATTTGCCAG+TGG 0.633124 1_1:-29989858 None:intergenic
GGATAGTGAATTGGCTGATG+TGG 0.636323 1_1:+29987888 Msa0017940:CDS
GGATAGATTTAATGATGCCA+TGG 0.638820 1_1:-29985499 None:intergenic
GAATTGGTAGTTACTGCGAT+CGG 0.641932 1_1:+29991291 Msa0017940:three_prime_UTR
TGGTGTCACTGTTGCCAAAG+AGG 0.646809 1_1:+29985885 Msa0017940:CDS
AACCCTGTGCTTATCACACG+TGG 0.648183 1_1:+29986608 Msa0017940:CDS
ACTGTTATCAGAGAGGAGGT+TGG 0.652322 1_1:+29988579 Msa0017940:CDS
ATGCAACTCCTTGGCCATGG+CGG 0.653898 1_1:-29985634 None:intergenic
GAACCTTAAAGTCTCCGCCA+TGG 0.655961 1_1:+29985620 Msa0017940:CDS
TTAATGATGCCATGGTTGTG+TGG 0.656505 1_1:-29985491 None:intergenic
GAGGGCATGCAATTTGATCG+AGG 0.658220 1_1:+29988039 Msa0017940:CDS
ATGTGGCAGCAGTTAGTGCA+GGG 0.658714 1_1:+29987905 Msa0017940:CDS
GGAGGAAGAGAGGTTGCATG+AGG 0.660744 1_1:-29985520 None:intergenic
AGACGCTCTTAACGCTACAA+AGG 0.660955 1_1:+29989269 Msa0017940:CDS
TGGGATCATTGATCCTACAA+AGG 0.667555 1_1:+29989889 Msa0017940:CDS
GGATCTTATTAACATACTAG+AGG 0.670020 1_1:+29988250 Msa0017940:CDS
AACCAGATTGTGTATCACAT+CGG 0.672063 1_1:-29991058 None:intergenic
TTGCTCGGAATTGAGAATGG+AGG 0.673266 1_1:-29976899 None:intergenic
GATTCGGTATGTAGAAGTGG+CGG 0.674919 1_1:+29990997 Msa0017940:exon
GGTGTCGTTACACTTGAGGA+GGG 0.689354 1_1:+29987985 Msa0017940:CDS
GGTAGGAAATATGATAGCTG+AGG 0.689740 1_1:+29987939 Msa0017940:CDS
ACTCTTCCTGGAGAGAGCGA+CGG 0.692153 1_1:-29985595 None:intergenic
CGTTGAATTTGAGAACTGCA+AGG 0.697779 1_1:+29988104 Msa0017940:CDS
TAGTGCAGGGAACAATCATG+AGG 0.700989 1_1:+29987918 Msa0017940:CDS
TATAGGTACTGTTATCAGAG+AGG 0.702894 1_1:+29988572 Msa0017940:intron
TGTTGAGATAAAGGAACCTG+AGG 0.713419 1_1:+29990577 Msa0017940:CDS
AGGATTGCAAAACTGTCTGG+TGG 0.719435 1_1:+29989068 Msa0017940:CDS
ACCTTGAGCCAAAACAACAG+AGG 0.725524 1_1:-29986439 None:intergenic
TACCACGTGTGATAAGCACA+GGG 0.740125 1_1:-29986610 None:intergenic
AGGGAATTGAGAGAAAATGG+TGG 0.761398 1_1:-29976963 None:intergenic
GAATGAGGTTCTAGGCACTG+CGG 0.821029 1_1:+29988623 Msa0017940:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTCATAAAAAAGAAAAAAAA+AGG - chr1_1:29978782-29978801 None:intergenic 10.0%
!!! ATAAATATATTTTTGAATAG+GGG - chr1_1:29981859-29981878 None:intergenic 10.0%
!!! GTATAAATATATTTTTGAAT+AGG - chr1_1:29981861-29981880 None:intergenic 10.0%
!!! AAAACTATGATTTTAAATAT+TGG + chr1_1:29983218-29983237 Msa0017940:intron 10.0%
!!! AAACTATGATTTTAAATATT+GGG + chr1_1:29983219-29983238 Msa0017940:intron 10.0%
!! TTAATAAAAGTAAAATATAC+TGG - chr1_1:29983504-29983523 None:intergenic 10.0%
!!! ATTATTGAACATTTTAATTT+TGG + chr1_1:29984649-29984668 Msa0017940:intron 10.0%
!! AATTTATGTTTAAGAAAAAA+AGG - chr1_1:29985096-29985115 None:intergenic 10.0%
!!! AAAGAAAAAATAAATCTTTT+TGG - chr1_1:29986973-29986992 None:intergenic 10.0%
!! CATAAAAAAAGAAAAAAAAA+AGG - chr1_1:29987346-29987365 None:intergenic 10.0%
!!! AGTTTTTTTTATTTTTCATA+TGG + chr1_1:29989503-29989522 Msa0017940:intron 10.0%
!! AAAATATGATATTATATACT+AGG + chr1_1:29990918-29990937 Msa0017940:intron 10.0%
!!! TTTACTTGAATTATTGTTTT+TGG + chr1_1:29977597-29977616 Msa0017940:intron 15.0%
!!! TTTACTTGAATTATTGTTTT+AGG + chr1_1:29977597-29977616 Msa0017940:intron 15.0%
!!! TTTTTAGTGAATTAATAATG+TGG + chr1_1:29977767-29977786 Msa0017940:intron 15.0%
!!! TTTTAGTGAATTAATAATGT+GGG + chr1_1:29977768-29977787 Msa0017940:intron 15.0%
!!! AGAGTGAAATTTTATTTTAT+AGG + chr1_1:29978056-29978075 Msa0017940:intron 15.0%
!!! AAAAAAATAAAAACTGACTT+TGG - chr1_1:29978676-29978695 None:intergenic 15.0%
!!! TTCTTTTTTATGAATTGAAA+TGG + chr1_1:29978788-29978807 Msa0017940:intron 15.0%
!!! GTTTTTGTAAATAAATAGTT+AGG + chr1_1:29979001-29979020 Msa0017940:intron 15.0%
!!! GTTTTTTTAGATTGATTAAT+TGG + chr1_1:29979023-29979042 Msa0017940:intron 15.0%
!! ACTATTAATGTAAAAAACAT+AGG - chr1_1:29979197-29979216 None:intergenic 15.0%
!!! TTAAAAAATGCGAAATATTT+TGG + chr1_1:29980286-29980305 Msa0017940:intron 15.0%
!! ATAACTTTATAATTAAAACG+TGG + chr1_1:29981087-29981106 Msa0017940:intron 15.0%
!! AAAATATGAAGATTTAATGT+CGG + chr1_1:29981338-29981357 Msa0017940:intron 15.0%
!! AATTTCCTTAAAAAAAATTG+TGG + chr1_1:29981993-29982012 Msa0017940:intron 15.0%
!! TCCATTATTAATTAATAACA+CGG - chr1_1:29982986-29983005 None:intergenic 15.0%
!!! AATAAACAATGGTATTTTTT+TGG - chr1_1:29983140-29983159 None:intergenic 15.0%
!! TATTGAAAAAGATATACAAA+AGG + chr1_1:29983600-29983619 Msa0017940:intron 15.0%
!!! ATTAACTTGATTTGATTTTT+AGG + chr1_1:29984727-29984746 Msa0017940:intron 15.0%
!!! AGAAAAACATTTTTTTTCAT+AGG - chr1_1:29985236-29985255 None:intergenic 15.0%
!!! AATATGATATGATTTGATTT+TGG + chr1_1:29985274-29985293 Msa0017940:intron 15.0%
!! ATGAAATGAAACTATATATT+AGG - chr1_1:29985382-29985401 None:intergenic 15.0%
!!! ATTATATCACTTTATCTTTT+TGG + chr1_1:29987091-29987110 Msa0017940:intron 15.0%
!!! CTTATCAAATTATTTTGTAA+TGG + chr1_1:29987150-29987169 Msa0017940:intron 15.0%
!!! TTTACAAAAAAAACAGATTT+TGG - chr1_1:29987266-29987285 None:intergenic 15.0%
!!! TCTTTTTTTATGAATTGAAA+TGG + chr1_1:29987354-29987373 Msa0017940:intron 15.0%
!!! GTTTTTGTAAATAAATAGTT+AGG + chr1_1:29979001-29979020 Msa0017940:intron 15.0%
!!! GTTTTTTTAGATTGATTAAT+TGG + chr1_1:29979023-29979042 Msa0017940:intron 15.0%
!! ACTATTAATGTAAAAAACAT+AGG - chr1_1:29979197-29979216 None:intergenic 15.0%
!! GATAAATTAATGAACATTAT+GGG - chr1_1:29989308-29989327 None:intergenic 15.0%
!!! TGTTAGTTTTGATTAAATTT+TGG + chr1_1:29990011-29990030 Msa0017940:intron 15.0%
!!! AATAAATGATGGTATTTTTT+TGG - chr1_1:29990839-29990858 None:intergenic 15.0%
!!! TTCACTTGAATTATTGTTTT+TGG + chr1_1:29977419-29977438 Msa0017940:intron 20.0%
!!! TTTTTAGTGAATTAGTTATG+TGG + chr1_1:29977495-29977514 Msa0017940:intron 20.0%
!!! TTTTAGTGAATTAGTTATGT+GGG + chr1_1:29977496-29977515 Msa0017940:intron 20.0%
!!! TTCACTTGAATTATTGTTTT+TGG + chr1_1:29977419-29977438 Msa0017940:intron 20.0%
!!! TATTTATTTTGTCTGAGTTT+AGG + chr1_1:29977565-29977584 Msa0017940:intron 20.0%
!!! ATTTATTTTGTCTGAGTTTA+GGG + chr1_1:29977566-29977585 Msa0017940:intron 20.0%
!! TTTAGTGAATTAATAATGTG+GGG + chr1_1:29977769-29977788 Msa0017940:intron 20.0%
!!! TAAAATTTCACTCTAAAATG+AGG - chr1_1:29978050-29978069 None:intergenic 20.0%
!!! ATTTTTATTACACGTGTTAT+GGG + chr1_1:29978212-29978231 Msa0017940:intron 20.0%
!! AAGCAAAGGAAAAAAAAAAT+TGG - chr1_1:29978441-29978460 None:intergenic 20.0%
!!! TTTTTTTCTCAATTAGATGT+AGG + chr1_1:29978585-29978604 Msa0017940:intron 20.0%
!!! TTTTTTCTCAATTAGATGTA+GGG + chr1_1:29978586-29978605 Msa0017940:intron 20.0%
!!! AAAAAATTAGCCTTCAATTA+TGG + chr1_1:29978820-29978839 Msa0017940:intron 20.0%
!!! AAAAATTAGCCTTCAATTAT+GGG + chr1_1:29978821-29978840 Msa0017940:intron 20.0%
!! AGTTTAAATGAAAAAGATGA+GGG - chr1_1:29979268-29979287 None:intergenic 20.0%
!! AAGTTTAAATGAAAAAGATG+AGG - chr1_1:29979269-29979288 None:intergenic 20.0%
!! AAAAAAAGTCTACATTATAC+AGG + chr1_1:29980414-29980433 Msa0017940:intron 20.0%
!! AAAATGTCTACATATTCTAT+AGG + chr1_1:29980464-29980483 Msa0017940:intron 20.0%
!! AAAAATATCTCCATATAAAG+GGG - chr1_1:29980980-29980999 None:intergenic 20.0%
!! GAAAAATATCTCCATATAAA+GGG - chr1_1:29980981-29981000 None:intergenic 20.0%
!! TATAAAGTTATAATCAGTGT+CGG - chr1_1:29981078-29981097 None:intergenic 20.0%
!!! TTTTTGCTATTAATTTCAGA+GGG - chr1_1:29981153-29981172 None:intergenic 20.0%
!!! TTTTTTGCTATTAATTTCAG+AGG - chr1_1:29981154-29981173 None:intergenic 20.0%
!! AAATTAATAGCAAAAAATGC+TGG + chr1_1:29981157-29981176 Msa0017940:intron 20.0%
!!! AACTTATGTAACTTGTATAT+TGG + chr1_1:29981265-29981284 Msa0017940:intron 20.0%
!!! TAAATTAAACTTAGCTTGTA+GGG + chr1_1:29981469-29981488 Msa0017940:intron 20.0%
!!! CATTATAAATGGTTTGTATA+TGG + chr1_1:29981499-29981518 Msa0017940:intron 20.0%
!!! CTTGTGTTTTGATTAAATTT+TGG + chr1_1:29981526-29981545 Msa0017940:intron 20.0%
!! TTCCTTAGAAAAATTGTATT+TGG + chr1_1:29981607-29981626 Msa0017940:intron 20.0%
!!! TTTTAAAAACTGACAATAAG+AGG - chr1_1:29981923-29981942 None:intergenic 20.0%
!!! TACATCCACAATTTTTTTTA+AGG - chr1_1:29982001-29982020 None:intergenic 20.0%
!! TATAATATCATCATCACATT+CGG + chr1_1:29982150-29982169 Msa0017940:intron 20.0%
!!! TAAGCAAAAATTCACTTTTT+AGG - chr1_1:29982292-29982311 None:intergenic 20.0%
!! ACTAGAACATAAAATAAATC+AGG - chr1_1:29982623-29982642 None:intergenic 20.0%
!!! ACCGTGTTATTAATTAATAA+TGG + chr1_1:29982982-29983001 Msa0017940:intron 20.0%
!! ATACACTTATTCTACTTATA+GGG + chr1_1:29983625-29983644 Msa0017940:intron 20.0%
!! GATACAATTGTACTATTTAT+AGG + chr1_1:29983677-29983696 Msa0017940:intron 20.0%
!! AAAAATAGAGATTCTGTTAT+GGG - chr1_1:29983789-29983808 None:intergenic 20.0%
!! TCAATACATAATCAATTTCT+GGG - chr1_1:29984072-29984091 None:intergenic 20.0%
!!! ATATCAACATATTTGTTAGT+TGG - chr1_1:29985171-29985190 None:intergenic 20.0%
!! TTCAATTGAGTTATTGTATT+TGG + chr1_1:29985992-29986011 Msa0017940:intron 20.0%
!!! TTTACTTGAATTGTTGTTTT+TGG + chr1_1:29986130-29986149 Msa0017940:intron 20.0%
!! TTTAGTGAATTAGTTATATG+TGG + chr1_1:29986283-29986302 Msa0017940:intron 20.0%
!! TAACTAATAAATGCTTGATT+TGG + chr1_1:29986511-29986530 Msa0017940:intron 20.0%
!!! AGAGTGAAATTTCATTTTAT+AGG + chr1_1:29986568-29986587 Msa0017940:intron 20.0%
!! TACACAAAAAAACAAGAAAA+CGG - chr1_1:29986695-29986714 None:intergenic 20.0%
!! CAAAATATGCAAAAAAATGT+GGG - chr1_1:29986766-29986785 None:intergenic 20.0%
!!! CACATTTTTTTGCATATTTT+GGG + chr1_1:29986765-29986784 Msa0017940:intron 20.0%
!!! ACATTTTTTTGCATATTTTG+GGG + chr1_1:29986766-29986785 Msa0017940:intron 20.0%
!!! TTTTTTCTCAATTTAGATGT+AGG + chr1_1:29987175-29987194 Msa0017940:intron 20.0%
!!! TTTTTCTCAATTTAGATGTA+GGG + chr1_1:29987176-29987195 Msa0017940:intron 20.0%
!! CAGATTTGTAAATTATGAAA+TGG + chr1_1:29987427-29987446 Msa0017940:intron 20.0%
!! ATTTGTAAATTATGAAATGG+AGG + chr1_1:29987430-29987449 Msa0017940:intron 20.0%
!! AGTTTAAATGAAAAAGATGA+GGG - chr1_1:29979268-29979287 None:intergenic 20.0%
!! AAGTTTAAATGAAAAAGATG+AGG - chr1_1:29979269-29979288 None:intergenic 20.0%
!! AAAATGTCTACATATTATAC+AGG + chr1_1:29989007-29989026 Msa0017940:intron 20.0%
!! GGATAAATTAATGAACATTA+TGG - chr1_1:29989309-29989328 None:intergenic 20.0%
!!! TCATTAATTTATCCTTTTAC+TGG + chr1_1:29989315-29989334 Msa0017940:intron 20.0%
!!! TTTTTGCTATTAATTTCAGA+GGG - chr1_1:29981153-29981172 None:intergenic 20.0%
!!! TTTTTTGCTATTAATTTCAG+AGG - chr1_1:29981154-29981173 None:intergenic 20.0%
!! AAATTAATAGCAAAAAATGC+TGG + chr1_1:29981157-29981176 Msa0017940:intron 20.0%
!! GTATAAAAATTGGCTAAATT+TGG + chr1_1:29989744-29989763 Msa0017940:intron 20.0%
!! TACTAGAGAAAAAAAAATAC+AGG - chr1_1:29989932-29989951 None:intergenic 20.0%
!!! TAAATTAAACTTAGCTTGTA+GGG + chr1_1:29981469-29981488 Msa0017940:intron 20.0%
!!! CATTATAAATGGTTTGTATA+TGG + chr1_1:29981499-29981518 Msa0017940:intron 20.0%
!! TTCCTTAAAAAAATTGTATG+TGG + chr1_1:29990094-29990113 Msa0017940:intron 20.0%
!! ACTAGAACATAAAATAAATC+AGG - chr1_1:29982623-29982642 None:intergenic 20.0%
!!! ACGATTTTTAAAACAATTCT+TGG + chr1_1:29990247-29990266 Msa0017940:intron 20.0%
!! AATAGAAAGTTAAAACTCAA+AGG + chr1_1:29991269-29991288 Msa0017940:three_prime_UTR 20.0%
!!! TTTGTGTTTTTGTTACAGAA+TGG + chr1_1:29977253-29977272 Msa0017940:intron 25.0%
! TTTAGTGAATTAGTTATGTG+GGG + chr1_1:29977497-29977516 Msa0017940:intron 25.0%
!!! TTTTTGGTGAATTAGTTATG+TGG + chr1_1:29977613-29977632 Msa0017940:intron 25.0%
!! TTTTGGTGAATTAGTTATGT+GGG + chr1_1:29977614-29977633 Msa0017940:intron 25.0%
!!! TTTTAGGTGAATTAGTTATG+TGG + chr1_1:29977690-29977709 Msa0017940:intron 25.0%
! TGTTTACATTTGCGTTAAAA+AGG + chr1_1:29977809-29977828 Msa0017940:intron 25.0%
! TAAGTAACTAATAATGTGCT+TGG + chr1_1:29977993-29978012 Msa0017940:intron 25.0%
! ACTTAAACTAATGTCAAAAG+AGG + chr1_1:29978152-29978171 Msa0017940:intron 25.0%
!! CATTTTTATTACACGTGTTA+TGG + chr1_1:29978211-29978230 Msa0017940:intron 25.0%
! TGAAGAAATGATAATCAATG+AGG + chr1_1:29978511-29978530 Msa0017940:intron 25.0%
! GAAGAAATGATAATCAATGA+GGG + chr1_1:29978512-29978531 Msa0017940:intron 25.0%
! AAGAAATGATAATCAATGAG+GGG + chr1_1:29978513-29978532 Msa0017940:intron 25.0%
!! TTTTTCTCAATTAGATGTAG+GGG + chr1_1:29978587-29978606 Msa0017940:intron 25.0%
! CATGAACTAAACCAAATTTA+TGG + chr1_1:29978621-29978640 Msa0017940:intron 25.0%
! ACTAAACCAAATTTATGGTT+CGG + chr1_1:29978626-29978645 Msa0017940:intron 25.0%
!! TTTTATAAACCCGTTCAATT+TGG + chr1_1:29978714-29978733 Msa0017940:intron 25.0%
! TAATTTCAACCCATAATTGA+AGG - chr1_1:29978833-29978852 None:intergenic 25.0%
! CAGATTTGTAAATTATGAAG+TGG + chr1_1:29978861-29978880 Msa0017940:intron 25.0%
!! TTTATTGTTTCTCAAAACTG+GGG - chr1_1:29978944-29978963 None:intergenic 25.0%
!! GTTTATTGTTTCTCAAAACT+GGG - chr1_1:29978945-29978964 None:intergenic 25.0%
! TATACAAGTGCATCTAAATA+GGG - chr1_1:29979090-29979109 None:intergenic 25.0%
! ATATACAAGTGCATCTAAAT+AGG - chr1_1:29979091-29979110 None:intergenic 25.0%
! ATTTAAACTTAGAAGAGTTG+TGG + chr1_1:29979279-29979298 Msa0017940:intron 25.0%
! TGGCAAAGATAATAATAAGT+TGG - chr1_1:29979586-29979605 None:intergenic 25.0%
!! TAAGTAAAAACACAAGTTGA+TGG - chr1_1:29979606-29979625 None:intergenic 25.0%
! TAAACCAAAAAAGGAACAAA+GGG - chr1_1:29979953-29979972 None:intergenic 25.0%
! ACAAATTAAGAACCAAATTG+AGG + chr1_1:29980161-29980180 Msa0017940:intron 25.0%
! TTACTTATTCTTCATGTACA+AGG - chr1_1:29980258-29980277 None:intergenic 25.0%
!! TTTTTCTTCATCATTTGCAA+GGG - chr1_1:29980912-29980931 None:intergenic 25.0%
! AAAATATCTCCATATAAAGG+GGG - chr1_1:29980979-29980998 None:intergenic 25.0%
! CGAAAAATATCTCCATATAA+AGG - chr1_1:29980982-29981001 None:intergenic 25.0%
!! ATGGAGATATTTTTCGTTTT+AGG + chr1_1:29980986-29981005 Msa0017940:intron 25.0%
!! TAGTGAGAAGGTATAAAAAT+CGG + chr1_1:29981198-29981217 Msa0017940:intron 25.0%
! GTATAAAAATCGGCTAAATT+TGG + chr1_1:29981208-29981227 Msa0017940:intron 25.0%
!! TATGTAACTTGTATATTGGT+AGG + chr1_1:29981269-29981288 Msa0017940:intron 25.0%
! AATCTATAAATCACCTTTGT+TGG - chr1_1:29981378-29981397 None:intergenic 25.0%
!!! GTAAATTAAACTTAGCTTGT+AGG + chr1_1:29981468-29981487 Msa0017940:intron 25.0%
! ACAAACCATTTATAATGATG+CGG - chr1_1:29981496-29981515 None:intergenic 25.0%
!! CTCCAAATACAATTTTTCTA+AGG - chr1_1:29981612-29981631 None:intergenic 25.0%
! CTTAGAAAAATTGTATTTGG+AGG + chr1_1:29981610-29981629 Msa0017940:intron 25.0%
! GAAATTATGAAGAGAGAAAT+AGG + chr1_1:29981704-29981723 Msa0017940:intron 25.0%
!!! AGTAGATTTGAAGTATTGTT+TGG + chr1_1:29981767-29981786 Msa0017940:intron 25.0%
! CTGTGTAATTCGTATATTAA+TGG - chr1_1:29982078-29982097 None:intergenic 25.0%
! TGTTTGCTTATATTTGTGAT+CGG - chr1_1:29982193-29982212 None:intergenic 25.0%
! CATTCAATAAATGATGTATG+TGG + chr1_1:29982228-29982247 Msa0017940:intron 25.0%
! CATTGAATAAATGATGTATG+TGG - chr1_1:29982267-29982286 None:intergenic 25.0%
!! TTTTTGCTTATATTTGTGAC+CGG + chr1_1:29982302-29982321 Msa0017940:intron 25.0%
! ATGTATAAGAAATGAAAGCA+AGG + chr1_1:29982374-29982393 Msa0017940:intron 25.0%
! TGTATAAGAAATGAAAGCAA+GGG + chr1_1:29982375-29982394 Msa0017940:intron 25.0%
! AAACAAACAGACTATTAATG+TGG + chr1_1:29982588-29982607 Msa0017940:intron 25.0%
! AACAAACAGACTATTAATGT+GGG + chr1_1:29982589-29982608 Msa0017940:intron 25.0%
!!! TATGTTCTAGTTTCTTGATT+AGG + chr1_1:29982632-29982651 Msa0017940:intron 25.0%
!!! ATGTTCTAGTTTCTTGATTA+GGG + chr1_1:29982633-29982652 Msa0017940:intron 25.0%
! ATTCTATGACGATTCTTAAA+AGG + chr1_1:29982674-29982693 Msa0017940:intron 25.0%
! AGAGTAATAGGAATAAACAA+TGG - chr1_1:29983151-29983170 None:intergenic 25.0%
! CCTTAAAATTCAAGATTCTT+AGG - chr1_1:29983196-29983215 None:intergenic 25.0%
!! CCTAAGAATCTTGAATTTTA+AGG + chr1_1:29983193-29983212 Msa0017940:intron 25.0%
!! TATCTTTTGTAAAACGTTGT+TGG + chr1_1:29983251-29983270 Msa0017940:intron 25.0%
! TATTACATCGAAAAAATAGG+AGG - chr1_1:29983351-29983370 None:intergenic 25.0%
! GTGTATTACATCGAAAAAAT+AGG - chr1_1:29983354-29983373 None:intergenic 25.0%
! TTTCGATGTAATACACAATT+TGG + chr1_1:29983358-29983377 Msa0017940:intron 25.0%
!!! TTGGTAGCTATTTTATTTGT+AGG + chr1_1:29983377-29983396 Msa0017940:intron 25.0%
! CTTGAGCTAATAATTGAAAA+AGG + chr1_1:29983461-29983480 Msa0017940:intron 25.0%
! GATACACTTATTCTACTTAT+AGG + chr1_1:29983624-29983643 Msa0017940:intron 25.0%
! TTAAGAATGTTAGTTCATTC+TGG - chr1_1:29983741-29983760 None:intergenic 25.0%
! CAAAAATAGAGATTCTGTTA+TGG - chr1_1:29983790-29983809 None:intergenic 25.0%
! GTCAATACATAATCAATTTC+TGG - chr1_1:29984073-29984092 None:intergenic 25.0%
!!! TTATCTTCTTTTTCAAACCT+TGG + chr1_1:29984264-29984283 Msa0017940:intron 25.0%
!! TAAAAAGATGGATTCATATC+AGG - chr1_1:29984401-29984420 None:intergenic 25.0%
!!! TATAAAAAAGTGTCAGGTTT+TGG - chr1_1:29985016-29985035 None:intergenic 25.0%
!!! AAACCTGACACTTTTTTATA+AGG + chr1_1:29985016-29985035 Msa0017940:intron 25.0%
!!! AATCCTTATAAAAAAGTGTC+AGG - chr1_1:29985022-29985041 None:intergenic 25.0%
! TGTTTAAGAAAAAAAGGCAA+GGG - chr1_1:29985090-29985109 None:intergenic 25.0%
! ATGTTTAAGAAAAAAAGGCA+AGG - chr1_1:29985091-29985110 None:intergenic 25.0%
!! CTTTACTCTAATTTTATCTG+AGG - chr1_1:29985209-29985228 None:intergenic 25.0%
!! TGTTTTTCTCTTTACTCTTT+AGG + chr1_1:29985247-29985266 Msa0017940:intron 25.0%
!! GTTTTTCTCTTTACTCTTTA+GGG + chr1_1:29985248-29985267 Msa0017940:intron 25.0%
! TGAAACTATATATTAGGTAG+AGG - chr1_1:29985376-29985395 None:intergenic 25.0%
!!! TTTGTGTTTTTGTTACAGAA+TGG + chr1_1:29977253-29977272 Msa0017940:intron 25.0%
! GAATTTGTATGAATTTGTCT+AGG + chr1_1:29985967-29985986 Msa0017940:intron 25.0%
!! TTTACTTGAATCACTGTTTT+TGG + chr1_1:29986052-29986071 Msa0017940:intron 25.0%
!! TTTTGGTGAATTAGTTATGT+AGG + chr1_1:29977614-29977633 Msa0017940:intron 25.0%
! TTTGGTGAATTAGTTATGTA+GGG + chr1_1:29986070-29986089 Msa0017940:intron 25.0%
! TTGTTTGTGAATTAGTTATG+TGG + chr1_1:29986204-29986223 Msa0017940:intron 25.0%
!!! TTTGCTTGTTGTTACATAAT+TGG + chr1_1:29986535-29986554 Msa0017940:intron 25.0%
!!! TTGCTTGTTGTTACATAATT+GGG + chr1_1:29986536-29986555 Msa0017940:intron 25.0%
! ACTTAAACTAATGTCAAAAG+AGG + chr1_1:29978152-29978171 Msa0017940:intron 25.0%
!! GTTTAAGCATTTTTATTCCA+CGG + chr1_1:29986720-29986739 Msa0017940:intron 25.0%
!! TTTAAGCATTTTTATTCCAC+GGG + chr1_1:29986721-29986740 Msa0017940:intron 25.0%
! CCAAAATATGCAAAAAAATG+TGG - chr1_1:29986767-29986786 None:intergenic 25.0%
!!! CCACATTTTTTTGCATATTT+TGG + chr1_1:29986764-29986783 Msa0017940:intron 25.0%
! TGTAGAAATGATAATCAATG+AGG + chr1_1:29987047-29987066 Msa0017940:intron 25.0%
! GTAGAAATGATAATCAATGA+GGG + chr1_1:29987048-29987067 Msa0017940:intron 25.0%
! TAGAAATGATAATCAATGAG+GGG + chr1_1:29987049-29987068 Msa0017940:intron 25.0%
!!! TTTATCTTTTTGGTTGTGTA+CGG + chr1_1:29987101-29987120 Msa0017940:intron 25.0%
!! TTTTCTCAATTTAGATGTAG+GGG + chr1_1:29987177-29987196 Msa0017940:intron 25.0%
!!! ATCTGTTTTTTTTGTAAACC+CGG + chr1_1:29987268-29987287 Msa0017940:intron 25.0%
!! TTTATTGTTTCTCAAAACTG+GGG - chr1_1:29978944-29978963 None:intergenic 25.0%
!! GTTTATTGTTTCTCAAAACT+GGG - chr1_1:29978945-29978964 None:intergenic 25.0%
! TATACAAGTGCATCTAAATA+GGG - chr1_1:29979090-29979109 None:intergenic 25.0%
! ATATACAAGTGCATCTAAAT+AGG - chr1_1:29979091-29979110 None:intergenic 25.0%
! ATTTAAACTTAGAAGAGTTG+TGG + chr1_1:29979279-29979298 Msa0017940:intron 25.0%
! TGGCAAAGATAATAATAAGT+TGG - chr1_1:29979586-29979605 None:intergenic 25.0%
!! TAAGTAAAAACACAAGTTGA+TGG - chr1_1:29979606-29979625 None:intergenic 25.0%
!!! TTCTTCATTTGTTCCTTTTT+TGG + chr1_1:29988510-29988529 Msa0017940:intron 25.0%
! ACAAATTAAGAACCAAATAG+AGG + chr1_1:29988725-29988744 Msa0017940:CDS 25.0%
! TTACTTATTCTTCATGTACA+AGG - chr1_1:29980258-29980277 None:intergenic 25.0%
!!! TTTTGTTTTGTTACGAGTAT+AGG + chr1_1:29989197-29989216 Msa0017940:intron 25.0%
!! TTTTTCTTCATCATTTGCAA+GGG - chr1_1:29980912-29980931 None:intergenic 25.0%
!! ATGGAGATAATTTTCGTTTT+AGG + chr1_1:29989522-29989541 Msa0017940:intron 25.0%
!! TAGTGAGAAGGTATAAAAAT+TGG + chr1_1:29981198-29981217 Msa0017940:intron 25.0%
!! TGCTGATGTAATTTGTATAT+CGG + chr1_1:29989792-29989811 Msa0017940:intron 25.0%
! AATCTATAAATCACCTTTGT+AGG - chr1_1:29981378-29981397 None:intergenic 25.0%
!!! GTAAATTAAACTTAGCTTGT+AGG + chr1_1:29981468-29981487 Msa0017940:intron 25.0%
! ACAAACCATTTATAATGATG+CGG - chr1_1:29981496-29981515 None:intergenic 25.0%
!!! CTCCACATACAATTTTTTTA+AGG - chr1_1:29990099-29990118 None:intergenic 25.0%
! CTTAAAAAAATTGTATGTGG+AGG + chr1_1:29990097-29990116 Msa0017940:intron 25.0%
!!! TATGTTCTAGTTTCTTGATT+AGG + chr1_1:29982632-29982651 Msa0017940:intron 25.0%
!!! ATGTTCTAGTTTCTTGATTA+GGG + chr1_1:29982633-29982652 Msa0017940:intron 25.0%
! ATACATTTCCATTATTGACA+CGG - chr1_1:29990694-29990713 None:intergenic 25.0%
! AGAGTAATAGGAATAAATGA+TGG - chr1_1:29990850-29990869 None:intergenic 25.0%
! CCTTAAAATTCAAGATTCTT+AGG - chr1_1:29983196-29983215 None:intergenic 25.0%
!! CCTAAGAATCTTGAATTTTA+AGG + chr1_1:29983193-29983212 Msa0017940:intron 25.0%
!! CATATTTTGTAAAACGTTGT+TGG + chr1_1:29990948-29990967 Msa0017940:intron 25.0%
! TCGATAAAAGTAAAATATGC+TGG - chr1_1:29991204-29991223 None:intergenic 25.0%
! AAGTTAAAACTCAAAGGAAT+TGG + chr1_1:29991275-29991294 Msa0017940:three_prime_UTR 25.0%
! GATAAGTTTTCTTTGTTGCT+CGG - chr1_1:29976917-29976936 None:intergenic 30.0%
TTTGTTGAAATACAACTCCT+TGG - chr1_1:29977137-29977156 None:intergenic 30.0%
GAGTTGTATTTCAACAAAGA+TGG + chr1_1:29977139-29977158 Msa0017940:intron 30.0%
!!! TTCGTTTTTTGAGCATGATT+GGG - chr1_1:29977197-29977216 None:intergenic 30.0%
!!! TTTCGTTTTTTGAGCATGAT+TGG - chr1_1:29977198-29977217 None:intergenic 30.0%
TCTCCTAAGATTGTTAATGA+TGG + chr1_1:29977355-29977374 Msa0017940:intron 30.0%
ACACCATCATTAACAATCTT+AGG - chr1_1:29977361-29977380 None:intergenic 30.0%
TTTGGTGAATTAGTTATGTG+GGG + chr1_1:29977615-29977634 Msa0017940:intron 30.0%
TTACATTTGCGTTAAAAAGG+TGG + chr1_1:29977812-29977831 Msa0017940:intron 30.0%
!! TGAGAATATTGGTGCTAAAT+TGG + chr1_1:29977851-29977870 Msa0017940:intron 30.0%
AACTAATAATGTGCTTGGTT+TGG + chr1_1:29977998-29978017 Msa0017940:intron 30.0%
!! TTTGCTTGTTGTTACATGAT+TGG + chr1_1:29978022-29978041 Msa0017940:intron 30.0%
!! TTGCTTGTTGTTACATGATT+GGG + chr1_1:29978023-29978042 Msa0017940:intron 30.0%
! GATTTTGAACCAAATTGAAC+GGG - chr1_1:29978726-29978745 None:intergenic 30.0%
! CGATTTTGAACCAAATTGAA+CGG - chr1_1:29978727-29978746 None:intergenic 30.0%
! CGTTCAATTTGGTTCAAAAT+CGG + chr1_1:29978725-29978744 Msa0017940:intron 30.0%
AATCATATGAATAGCAGAAG+AGG + chr1_1:29978894-29978913 Msa0017940:intron 30.0%
ATCATATGAATAGCAGAAGA+GGG + chr1_1:29978895-29978914 Msa0017940:intron 30.0%
! GGTTTATTGTTTCTCAAAAC+TGG - chr1_1:29978946-29978965 None:intergenic 30.0%
AAGTTATAGTTCATGTGAAC+CGG + chr1_1:29979051-29979070 Msa0017940:intron 30.0%
ATACAAGTGCATCTAAATAG+GGG - chr1_1:29979089-29979108 None:intergenic 30.0%
AAACAATCTGTATGTTGTTG+AGG + chr1_1:29979454-29979473 Msa0017940:intron 30.0%
AACAATCTGTATGTTGTTGA+GGG + chr1_1:29979455-29979474 Msa0017940:intron 30.0%
ACAAAAAGATATCCAATGCA+AGG + chr1_1:29979664-29979683 Msa0017940:intron 30.0%
CAAAAAGATATCCAATGCAA+GGG + chr1_1:29979665-29979684 Msa0017940:intron 30.0%
GGATCTTATTAACATACTAG+AGG + chr1_1:29979686-29979705 Msa0017940:intron 30.0%
CCTCTGCAATTATCAAAATA+GGG - chr1_1:29979731-29979750 None:intergenic 30.0%
TCCTCTGCAATTATCAAAAT+AGG - chr1_1:29979732-29979751 None:intergenic 30.0%
CTAAACCAAAAAAGGAACAA+AGG - chr1_1:29979954-29979973 None:intergenic 30.0%
AACTATTGTGGTTGTATCTT+TGG - chr1_1:29980100-29980119 None:intergenic 30.0%
AAAGATACAACCACAATAGT+TGG + chr1_1:29980099-29980118 Msa0017940:intron 30.0%
TGCCATGCAAACAATATTTA+GGG - chr1_1:29980219-29980238 None:intergenic 30.0%
ATGCCATGCAAACAATATTT+AGG - chr1_1:29980220-29980239 None:intergenic 30.0%
TGCAGAACAAGATTATGAAA+AGG + chr1_1:29980488-29980507 Msa0017940:intron 30.0%
!! TTGTGTTTTGTTACGAGTAT+AGG + chr1_1:29980655-29980674 Msa0017940:intron 30.0%
AAACTATGAGCTTATAGAAC+TGG - chr1_1:29980795-29980814 None:intergenic 30.0%
CTCATAGTTTCTTTACTTTC+AGG + chr1_1:29980805-29980824 Msa0017940:intron 30.0%
! CTTTTTCTTCATCATTTGCA+AGG - chr1_1:29980913-29980932 None:intergenic 30.0%
!!! GTTTTTTTTCCCCCTTTATA+TGG + chr1_1:29980967-29980986 Msa0017940:intron 30.0%
ACAAGTCAATAACACTTTCA+AGG - chr1_1:29981013-29981032 None:intergenic 30.0%
CAAACCATTTATAATGATGC+GGG - chr1_1:29981495-29981514 None:intergenic 30.0%
CATGATTTAAGAACCTCATT+TGG - chr1_1:29981559-29981578 None:intergenic 30.0%
AATTGTATTTGGAGGATGTT+AGG + chr1_1:29981618-29981637 Msa0017940:intron 30.0%
AAGAGAAGAAGAAGAGAAAT+AGG + chr1_1:29981793-29981812 Msa0017940:intron 30.0%
AATGCTCAATTTCTTCAGTT+TGG - chr1_1:29982522-29982541 None:intergenic 30.0%
AGTTTCTTGATTAGGGAAAT+TGG + chr1_1:29982640-29982659 Msa0017940:intron 30.0%
GTTTCTTGATTAGGGAAATT+GGG + chr1_1:29982641-29982660 Msa0017940:intron 30.0%
TTTCTTGATTAGGGAAATTG+GGG + chr1_1:29982642-29982661 Msa0017940:intron 30.0%
GAGTAGAAAGTTATACTCAT+AGG + chr1_1:29983568-29983587 Msa0017940:intron 30.0%
! TATAGGGAATCGTTTTGTAA+AGG + chr1_1:29983641-29983660 Msa0017940:intron 30.0%
TATTTATAGGAGCTCATTGT+CGG + chr1_1:29983690-29983709 Msa0017940:intron 30.0%
!!! TTTTTTTTTTGCTTTCGCAC+CGG + chr1_1:29983872-29983891 Msa0017940:intron 30.0%
TGTGAAATGATTGCACAAAA+TGG - chr1_1:29984469-29984488 None:intergenic 30.0%
CAAAATATAAGATGAGCAGA+TGG - chr1_1:29984566-29984585 None:intergenic 30.0%
! CATCTGCTCATCTTATATTT+TGG + chr1_1:29984564-29984583 Msa0017940:intron 30.0%
TCTCCTAAGATTGTTAATGA+TGG + chr1_1:29977355-29977374 Msa0017940:intron 30.0%
ACACCATCATTAACAATCTT+AGG - chr1_1:29977361-29977380 None:intergenic 30.0%
!! TATTTGATTTGTCTGAGTTC+AGG + chr1_1:29986020-29986039 Msa0017940:intron 30.0%
!! ATTTGATTTGTCTGAGTTCA+GGG + chr1_1:29986021-29986040 Msa0017940:intron 30.0%
!! ATTTAATTTGTCCGAGTGTA+AGG + chr1_1:29986159-29986178 Msa0017940:intron 30.0%
!! TTTAATTTGTCCGAGTGTAA+GGG + chr1_1:29986160-29986179 Msa0017940:intron 30.0%
!! TGAGAATATTGGTGCTAAAT+TGG + chr1_1:29977851-29977870 Msa0017940:intron 30.0%
!! TGCTTGTTGTTACATAATTG+GGG + chr1_1:29986537-29986556 Msa0017940:intron 30.0%
AAAAAAATGTGGGAAGTTTG+TGG - chr1_1:29986756-29986775 None:intergenic 30.0%
TATGAAACACAAACACCTTT+GGG + chr1_1:29986869-29986888 Msa0017940:intron 30.0%
CATGAACTGAACCAAATTTA+TGG + chr1_1:29987211-29987230 Msa0017940:intron 30.0%
ACTGAACCAAATTTATGGTT+CGG + chr1_1:29987216-29987235 Msa0017940:intron 30.0%
! ATTTTGAATCGTATTGAACC+GGG - chr1_1:29987289-29987308 None:intergenic 30.0%
! GATTTTGAATCGTATTGAAC+CGG - chr1_1:29987290-29987309 None:intergenic 30.0%
GGTTCAATACGATTCAAAAT+CGG + chr1_1:29987289-29987308 Msa0017940:intron 30.0%
!! AAAACATTAGCCTTCAATTC+TGG + chr1_1:29987386-29987405 Msa0017940:intron 30.0%
!! AAACATTAGCCTTCAATTCT+GGG + chr1_1:29987387-29987406 Msa0017940:intron 30.0%
TAATTTCAACCCAGAATTGA+AGG - chr1_1:29987399-29987418 None:intergenic 30.0%
AATCATATGAATAGCAGAAG+AGG + chr1_1:29978894-29978913 Msa0017940:intron 30.0%
ATCATATGAATAGCAGAAGA+GGG + chr1_1:29978895-29978914 Msa0017940:intron 30.0%
! GGTTTATTGTTTCTCAAAAC+TGG - chr1_1:29978946-29978965 None:intergenic 30.0%
AAGTTATAGTTCATGTGAAC+CGG + chr1_1:29979051-29979070 Msa0017940:intron 30.0%
ATACAAGTGCATCTAAATAG+GGG - chr1_1:29979089-29979108 None:intergenic 30.0%
AAACAATCTGTATGTTGTTG+AGG + chr1_1:29979454-29979473 Msa0017940:intron 30.0%
AACAATCTGTATGTTGTTGA+GGG + chr1_1:29979455-29979474 Msa0017940:intron 30.0%
ACAAAAAGATATCCAATGCA+AGG + chr1_1:29979664-29979683 Msa0017940:intron 30.0%
CAAAAAGATATCCAATGCAA+GGG + chr1_1:29979665-29979684 Msa0017940:intron 30.0%
GGATCTTATTAACATACTAG+AGG + chr1_1:29979686-29979705 Msa0017940:intron 30.0%
CCTCTGCAATTATCAAAATA+GGG - chr1_1:29979731-29979750 None:intergenic 30.0%
TCCTCTGCAATTATCAAAAT+AGG - chr1_1:29979732-29979751 None:intergenic 30.0%
!!! TTGTTCCTTTTTTGGTTTAG+CGG + chr1_1:29979954-29979973 Msa0017940:intron 30.0%
TATCTTCCCAATTCACTTAT+AGG + chr1_1:29988555-29988574 Msa0017940:intron 30.0%
ACAGTACCTATAAGTGAATT+GGG - chr1_1:29988564-29988583 None:intergenic 30.0%
AACAGTACCTATAAGTGAAT+TGG - chr1_1:29988565-29988584 None:intergenic 30.0%
AACTATTGTGGTTGTATCTT+TGG - chr1_1:29980100-29980119 None:intergenic 30.0%
AAAGATACAACCACAATAGT+TGG + chr1_1:29980099-29980118 Msa0017940:intron 30.0%
!! CCATGCAAACAATTTTTAAG+GGG - chr1_1:29988781-29988800 None:intergenic 30.0%
! GCCATGCAAACAATTTTTAA+GGG - chr1_1:29988782-29988801 None:intergenic 30.0%
! TGCCATGCAAACAATTTTTA+AGG - chr1_1:29988783-29988802 None:intergenic 30.0%
TGCAGAACAAGATTATGAAA+AGG + chr1_1:29980488-29980507 Msa0017940:intron 30.0%
! TGATTTGCAGAGAAGTTAAA+AGG - chr1_1:29989161-29989180 None:intergenic 30.0%
! CTCATATTTTCTTCACCTTT+AGG + chr1_1:29989347-29989366 Msa0017940:intron 30.0%
! CTTTTTCTTCATCATTTGCA+AGG - chr1_1:29980913-29980932 None:intergenic 30.0%
! GATGTAATTTGTATATCGGT+AGG + chr1_1:29989796-29989815 Msa0017940:intron 30.0%
CAAACCATTTATAATGATGC+GGG - chr1_1:29981495-29981514 None:intergenic 30.0%
TGATTTAAGAACCTCGTATT+TGG - chr1_1:29990044-29990063 None:intergenic 30.0%
TCATGCATATTGTTGCAAAA+TGG + chr1_1:29981574-29981593 Msa0017940:intron 30.0%
!! TAAATTTGTTGAAGTCTCAC+TGG + chr1_1:29990140-29990159 Msa0017940:intron 30.0%
AGTTTCTTGATTAGGGAAAT+TGG + chr1_1:29982640-29982659 Msa0017940:intron 30.0%
GTTTCTTGATTAGGGAAATT+GGG + chr1_1:29982641-29982660 Msa0017940:intron 30.0%
TTTCTTGATTAGGGAAATTG+GGG + chr1_1:29982642-29982661 Msa0017940:intron 30.0%
TGTATCACATCGGAAAAAAT+AGG - chr1_1:29991051-29991070 None:intergenic 30.0%
!!! CTGGTTGCTATTTTATTTGT+AGG + chr1_1:29991075-29991094 Msa0017940:three_prime_UTR 30.0%
CTTGAGCTAATAATCGAAAA+AGG + chr1_1:29991161-29991180 Msa0017940:three_prime_UTR 30.0%
AACTATTCTATACATGTTCC+TGG + chr1_1:29991223-29991242 Msa0017940:three_prime_UTR 30.0%
AATGTTAGTTCATTCTGTTG+AGG - chr1_1:29991337-29991356 None:intergenic 30.0%
AGGATGAAACTATTAGGTAG+GGG - chr1_1:29976882-29976901 None:intergenic 35.0%
GAGGATGAAACTATTAGGTA+GGG - chr1_1:29976883-29976902 None:intergenic 35.0%
GAATGGAGGATGAAACTATT+AGG - chr1_1:29976888-29976907 None:intergenic 35.0%
!! GGTTTAAGAGGATTTGGTTT+TGG - chr1_1:29976939-29976958 None:intergenic 35.0%
AGAAGATGGGAATGAAGAAA+TGG - chr1_1:29977041-29977060 None:intergenic 35.0%
TGTTTAATTCGTCCGAGTTT+AGG + chr1_1:29977447-29977466 Msa0017940:intron 35.0%
GTTTAATTCGTCCGAGTTTA+GGG + chr1_1:29977448-29977467 Msa0017940:intron 35.0%
AAAATCCTTGACCCTAAACT+CGG - chr1_1:29977462-29977481 None:intergenic 35.0%
! ATTAGTTATGTGGGGTGTTT+AGG + chr1_1:29977505-29977524 Msa0017940:intron 35.0%
! TTAGTTATGTGGGGTGTTTA+GGG + chr1_1:29977506-29977525 Msa0017940:intron 35.0%
!!! TGGAGTGTTTGTTTTGATGT+TGG + chr1_1:29977710-29977729 Msa0017940:intron 35.0%
!!! GGAGTGTTTGTTTTGATGTT+GGG + chr1_1:29977711-29977730 Msa0017940:intron 35.0%
!!! TGTTTTGATGTTGGGTGTTT+AGG + chr1_1:29977719-29977738 Msa0017940:intron 35.0%
!! GTTTTGATGTTGGGTGTTTA+GGG + chr1_1:29977720-29977739 Msa0017940:intron 35.0%
TTAGCACCAATATTCTCAAC+TGG - chr1_1:29977849-29977868 None:intergenic 35.0%
!! AACTACTACCTCTGTTGTTT+TGG + chr1_1:29977917-29977936 Msa0017940:intron 35.0%
!! TCTTATTGCAGAAGGTGTTA+AGG + chr1_1:29977947-29977966 Msa0017940:intron 35.0%
!!! GGTAGACTTGTTATGAGTTT+TGG + chr1_1:29977968-29977987 Msa0017940:intron 35.0%
!! TGCTTGTTGTTACATGATTG+GGG + chr1_1:29978024-29978043 Msa0017940:intron 35.0%
! ATTTTATAGGTTGTTGCAGC+TGG + chr1_1:29978069-29978088 Msa0017940:intron 35.0%
!!! TCCCACTTTTTTGCTTATTC+TGG + chr1_1:29978246-29978265 Msa0017940:intron 35.0%
GCCAGAATAAGCAAAAAAGT+GGG - chr1_1:29978250-29978269 None:intergenic 35.0%
GTTAAGCAATGTAATCCCAA+AGG - chr1_1:29978321-29978340 None:intergenic 35.0%
TATGAAACACGAACACCTTT+GGG + chr1_1:29978351-29978370 Msa0017940:intron 35.0%
ACTGAACCGAACCATAAATT+TGG - chr1_1:29978635-29978654 None:intergenic 35.0%
TTGGTTCAAAATCGGTGAAT+TGG + chr1_1:29978733-29978752 Msa0017940:intron 35.0%
TCATATGAATAGCAGAAGAG+GGG + chr1_1:29978896-29978915 Msa0017940:intron 35.0%
!! TTGAGTAAGGTTGGTAGAAA+GGG + chr1_1:29979398-29979417 Msa0017940:intron 35.0%
TCACTGTCTGTAACAAAGTA+GGG - chr1_1:29979509-29979528 None:intergenic 35.0%
CTTGCAGTTCTCAAATTCAA+CGG - chr1_1:29979540-29979559 None:intergenic 35.0%
GTTAATAAGATCCCTTGCAT+TGG - chr1_1:29979679-29979698 None:intergenic 35.0%
!!! CCCTATTTTGATAATTGCAG+AGG + chr1_1:29979728-29979747 Msa0017940:intron 35.0%
GGATATTGAACAAGAAGCTT+TGG + chr1_1:29979749-29979768 Msa0017940:intron 35.0%
! CTTGTTGTGAACAAACTTAG+AGG + chr1_1:29979777-29979796 Msa0017940:intron 35.0%
TCAAGATGGCAATATCATCA+AGG - chr1_1:29979860-29979879 None:intergenic 35.0%
TTATAAACCTCCTGTCAAGA+TGG - chr1_1:29979874-29979893 None:intergenic 35.0%
!!! TTCTCCCTTTGTTCCTTTTT+TGG + chr1_1:29979946-29979965 Msa0017940:intron 35.0%
!!! TCCTTTTTTGGTTTAGCTGT+TGG + chr1_1:29979958-29979977 Msa0017940:intron 35.0%
ACCAACAGCTAAACCAAAAA+AGG - chr1_1:29979962-29979981 None:intergenic 35.0%
TATCTTCCTAATTCGCTTAC+AGG + chr1_1:29979991-29980010 Msa0017940:intron 35.0%
!! CTTAATTTGTGAAACTCGCT+TGG - chr1_1:29980151-29980170 None:intergenic 35.0%
TGCAAACAATATTTAGGGAG+TGG - chr1_1:29980214-29980233 None:intergenic 35.0%
CTCCCTAAATATTGTTTGCA+TGG + chr1_1:29980214-29980233 Msa0017940:intron 35.0%
!! GTTTTGTTACGAGTATAGGT+TGG + chr1_1:29980659-29980678 Msa0017940:intron 35.0%
GGAAAAGAAATTGAGAGTTG+AGG + chr1_1:29980706-29980725 Msa0017940:intron 35.0%
GAAAGATTAAGTCACCTTTG+TGG - chr1_1:29980744-29980763 None:intergenic 35.0%
GAGCTTATAGAACTGGTAAA+AGG - chr1_1:29980788-29980807 None:intergenic 35.0%
TTATAATTAAAACGTGGCGC+AGG + chr1_1:29981093-29981112 Msa0017940:intron 35.0%
GCAAAAAATGCTGGTGTAAA+TGG + chr1_1:29981166-29981185 Msa0017940:intron 35.0%
TATGAAGATTTAATGTCGGC+TGG + chr1_1:29981342-29981361 Msa0017940:intron 35.0%
! ATGAAGATTTAATGTCGGCT+GGG + chr1_1:29981343-29981362 Msa0017940:intron 35.0%
AGACATGCTACTAAAGATAG+CGG - chr1_1:29981447-29981466 None:intergenic 35.0%
!!! TTTTGGTTTCACACCAAATG+AGG + chr1_1:29981543-29981562 Msa0017940:intron 35.0%
TGCTTATATTTGTGATCGGA+GGG - chr1_1:29982189-29982208 None:intergenic 35.0%
TTGCTTATATTTGTGATCGG+AGG - chr1_1:29982190-29982209 None:intergenic 35.0%
ACGATTCTTAAAAGGCTTCT+TGG + chr1_1:29982682-29982701 Msa0017940:intron 35.0%
! TAAGAATGTTTTCGCAACAG+AGG - chr1_1:29982856-29982875 None:intergenic 35.0%
! CTGTGTTGTTGTTGAGATAA+AGG + chr1_1:29982884-29982903 Msa0017940:intron 35.0%
ACATACCTGAATTGTCCATT+GGG - chr1_1:29982935-29982954 None:intergenic 35.0%
TACATACCTGAATTGTCCAT+TGG - chr1_1:29982936-29982955 None:intergenic 35.0%
CAATTCAGGTATGTAGTTTG+CGG + chr1_1:29982941-29982960 Msa0017940:intron 35.0%
ACAGTTACACACAGAGTAAT+AGG - chr1_1:29983163-29983182 None:intergenic 35.0%
! CTTTCTTTTCTCCTAGGATT+CGG + chr1_1:29983284-29983303 Msa0017940:intron 35.0%
TCGAAAAAATAGGAGGACAA+TGG - chr1_1:29983344-29983363 None:intergenic 35.0%
AATGTTAGTTCATTCTGGTG+AGG - chr1_1:29983736-29983755 None:intergenic 35.0%
!!! TCTATTTTTGTTACCCGTGA+AGG + chr1_1:29983800-29983819 Msa0017940:intron 35.0%
ATGTTGCCAACTCGATAATT+AGG + chr1_1:29983828-29983847 Msa0017940:intron 35.0%
CATGATCCTAATTATCGAGT+TGG - chr1_1:29983837-29983856 None:intergenic 35.0%
! AACGACAAATCAAGTTGCTT+GGG - chr1_1:29984035-29984054 None:intergenic 35.0%
! AAACGACAAATCAAGTTGCT+TGG - chr1_1:29984036-29984055 None:intergenic 35.0%
!! AAGCAACTTGATTTGTCGTT+TGG + chr1_1:29984035-29984054 Msa0017940:intron 35.0%
!! GATTATGTATTGACTACCCT+AGG + chr1_1:29984079-29984098 Msa0017940:intron 35.0%
CAAATAACAGCATGATCCTA+GGG - chr1_1:29984098-29984117 None:intergenic 35.0%
! ATCATGCTGTTATTTGGCTT+TGG + chr1_1:29984102-29984121 Msa0017940:intron 35.0%
!! TCATGCTGTTATTTGGCTTT+GGG + chr1_1:29984103-29984122 Msa0017940:intron 35.0%
GAAAACAAGTTCACTGCTTT+AGG + chr1_1:29984125-29984144 Msa0017940:intron 35.0%
CAGAAATATGATCTCTAGTC+TGG - chr1_1:29984199-29984218 None:intergenic 35.0%
TAGATAGCCATAAGTTAACG+TGG - chr1_1:29984332-29984351 None:intergenic 35.0%
AACAATGAGATGCAAAACGT+AGG - chr1_1:29984358-29984377 None:intergenic 35.0%
TTTGCATCTCATTGTTGCAT+TGG + chr1_1:29984362-29984381 Msa0017940:intron 35.0%
TTGTGCAATCATTTCACATG+AGG + chr1_1:29984471-29984490 Msa0017940:intron 35.0%
GTAGAGGTTTCAATGTTTAG+TGG - chr1_1:29985360-29985379 None:intergenic 35.0%
GTTGCTCAGAAAATTGAGAA+TGG - chr1_1:29985408-29985427 None:intergenic 35.0%
! CTCAATTTTCTGAGCAACAA+AGG + chr1_1:29985410-29985429 Msa0017940:intron 35.0%
!! GGTTTAAGAGGATTTGGTTT+TGG - chr1_1:29976939-29976958 None:intergenic 35.0%
GGATAGATTTAATGATGCCA+TGG - chr1_1:29985502-29985521 None:intergenic 35.0%
AGAAGATGGGAATGAAGAAA+TGG - chr1_1:29977041-29977060 None:intergenic 35.0%
TTTGTTGAAATGCAACTCCT+TGG - chr1_1:29985646-29985665 None:intergenic 35.0%
GAGTTGCATTTCAACAAAGA+TGG + chr1_1:29985648-29985667 Msa0017940:CDS 35.0%
CAATAAGAAACACACCTCTT+TGG - chr1_1:29985902-29985921 None:intergenic 35.0%
!!! TAGGGTGTTTGTTTTGATGT+GGG + chr1_1:29986088-29986107 Msa0017940:intron 35.0%
!! TTTTGATGTGGGGTGTTTAA+GGG + chr1_1:29986099-29986118 Msa0017940:intron 35.0%
AAATCTTAGACCCTTACACT+CGG - chr1_1:29986173-29986192 None:intergenic 35.0%
!!! TGGAGTGTTTGTTTTGATGT+GGG + chr1_1:29977710-29977729 Msa0017940:intron 35.0%
TGTTTGCATTTGCGTTCAAA+AGG + chr1_1:29986323-29986342 Msa0017940:intron 35.0%
TTAGCACCAATATTCTCAAC+CGG - chr1_1:29977849-29977868 None:intergenic 35.0%
!! AACTACTACCTCTGTTGTTT+TGG + chr1_1:29977917-29977936 Msa0017940:intron 35.0%
!! TCTTATTGCAGAAGGTGTTA+AGG + chr1_1:29977947-29977966 Msa0017940:intron 35.0%
! ATTTTATAGGTTGTTGCAGC+AGG + chr1_1:29978069-29978088 Msa0017940:intron 35.0%
GTTCATTGCGTAGCAATTAT+TGG + chr1_1:29986790-29986809 Msa0017940:intron 35.0%
!! CAAAGGTGTTTGTGTTTCAT+AGG - chr1_1:29986870-29986889 None:intergenic 35.0%
CTATGAAACACAAACACCTT+TGG + chr1_1:29986868-29986887 Msa0017940:intron 35.0%
ACTGAACCGAACCATAAATT+TGG - chr1_1:29978635-29978654 None:intergenic 35.0%
TCATATGAATAGCAGAAGAG+GGG + chr1_1:29978896-29978915 Msa0017940:intron 35.0%
!! TTGAGTAAGGTTGGTAGAAA+GGG + chr1_1:29979398-29979417 Msa0017940:intron 35.0%
TCACTGTCTGTAACAAAGTA+GGG - chr1_1:29979509-29979528 None:intergenic 35.0%
CTTGCAGTTCTCAAATTCAA+CGG - chr1_1:29979540-29979559 None:intergenic 35.0%
GTTAATAAGATCCCTTGCAT+TGG - chr1_1:29979679-29979698 None:intergenic 35.0%
!!! CCCTATTTTGATAATTGCAG+AGG + chr1_1:29979728-29979747 Msa0017940:intron 35.0%
GGATATTGAACAAGAAGCTT+TGG + chr1_1:29979749-29979768 Msa0017940:intron 35.0%
! CTTGTTGTGAACAAACTTAG+AGG + chr1_1:29979777-29979796 Msa0017940:intron 35.0%
TCAAGATGGCAATATCATCA+AGG - chr1_1:29979860-29979879 None:intergenic 35.0%
TTATAAACCTCCTGTCAAGA+TGG - chr1_1:29979874-29979893 None:intergenic 35.0%
! TATAGGTACTGTTATCAGAG+AGG + chr1_1:29988572-29988591 Msa0017940:intron 35.0%
!! TGCAAACAATTTTTAAGGGG+TGG - chr1_1:29988778-29988797 None:intergenic 35.0%
CCCCTTAAAAATTGTTTGCA+TGG + chr1_1:29988778-29988797 Msa0017940:intron 35.0%
TTGGAGTTATGCATAACGTT+AGG + chr1_1:29988869-29988888 Msa0017940:intron 35.0%
GTATGCTGCATACATACATT+TGG - chr1_1:29988916-29988935 None:intergenic 35.0%
CATACGAGTGGTCATATATA+AGG + chr1_1:29988931-29988950 Msa0017940:intron 35.0%
AAAAGGAGAAGTTGAACGAA+AGG + chr1_1:29989048-29989067 Msa0017940:CDS 35.0%
!! GTTTTGTTACGAGTATAGGT+TGG + chr1_1:29980659-29980678 Msa0017940:intron 35.0%
TTATAATTAAAACGCGACGC+AGG + chr1_1:29989629-29989648 Msa0017940:intron 35.0%
TAATTTCAGAGGGTAGCTAA+GGG - chr1_1:29989679-29989698 None:intergenic 35.0%
TTAATTTCAGAGGGTAGCTA+AGG - chr1_1:29989680-29989699 None:intergenic 35.0%
GCAAAAAATGCTGGTGTAAA+TGG + chr1_1:29981166-29981185 Msa0017940:intron 35.0%
CAAATCTTCATATTTGCCAG+TGG - chr1_1:29989861-29989880 None:intergenic 35.0%
TATGAAGATTTGATGTCTGC+TGG + chr1_1:29989869-29989888 Msa0017940:CDS 35.0%
ATGAAGATTTGATGTCTGCT+GGG + chr1_1:29989870-29989889 Msa0017940:CDS 35.0%
AATTGTATGTGGAGGATGTT+AGG + chr1_1:29990105-29990124 Msa0017940:intron 35.0%
! TCTCACTGGACTTTTAATGT+GGG + chr1_1:29990154-29990173 Msa0017940:intron 35.0%
CTTGATACGAAACTTTGACT+TGG + chr1_1:29990355-29990374 Msa0017940:intron 35.0%
TAAGCATTCACACACATAGA+AGG - chr1_1:29990407-29990426 None:intergenic 35.0%
! CTGTGTTGTTGTTGAGATAA+AGG + chr1_1:29982884-29982903 Msa0017940:intron 35.0%
ACATACCTGAATTGTCCATA+GGG - chr1_1:29990619-29990638 None:intergenic 35.0%
TACATACCTGAATTGTCCAT+AGG - chr1_1:29982936-29982955 None:intergenic 35.0%
TTCTATTGCCGTGTCAATAA+TGG + chr1_1:29990683-29990702 Msa0017940:intron 35.0%
ACAGTTACACACAGAGTAAT+AGG - chr1_1:29983163-29983182 None:intergenic 35.0%
! CTTTCTTTTCTCCTAGGATT+CGG + chr1_1:29983284-29983303 Msa0017940:intron 35.0%
CGGAAAAAATAGGAGGAAAA+TGG - chr1_1:29991041-29991060 None:intergenic 35.0%
ATCACATCGGAAAAAATAGG+AGG - chr1_1:29991048-29991067 None:intergenic 35.0%
AACCAGATTGTGTATCACAT+CGG - chr1_1:29991061-29991080 None:intergenic 35.0%
TCTGTTGAGGATCAATTAGT+TGG - chr1_1:29991324-29991343 None:intergenic 35.0%
GGAGGATGAAACTATTAGGT+AGG - chr1_1:29976884-29976903 None:intergenic 40.0%
TTGTTGCTCGGAATTGAGAA+TGG - chr1_1:29976905-29976924 None:intergenic 40.0%
TTGAGAGAAAATGGTGGCTA+GGG - chr1_1:29976960-29976979 None:intergenic 40.0%
ATTGAGAGAAAATGGTGGCT+AGG - chr1_1:29976961-29976980 None:intergenic 40.0%
AGGGAATTGAGAGAAAATGG+TGG - chr1_1:29976966-29976985 None:intergenic 40.0%
TGCAGGGAATTGAGAGAAAA+TGG - chr1_1:29976969-29976988 None:intergenic 40.0%
!! GATTTGGTTGGTGTTACTCT+TGG + chr1_1:29977292-29977311 Msa0017940:intron 40.0%
AGAACAACATTCCTTCCCTT+AGG - chr1_1:29977319-29977338 None:intergenic 40.0%
GTTGTTCTTGAGAGCAAGTA+TGG + chr1_1:29977331-29977350 Msa0017940:intron 40.0%
TTGCGTTAAAAAGGTGGAGT+TGG + chr1_1:29977818-29977837 Msa0017940:intron 40.0%
GAGGATCCAGTTGAGAATAT+TGG + chr1_1:29977840-29977859 Msa0017940:intron 40.0%
! TGGTGCTAAATTGGTTAGAC+AGG + chr1_1:29977860-29977879 Msa0017940:intron 40.0%
TGCCAAATCATTTGTCTTGG+CGG - chr1_1:29977889-29977908 None:intergenic 40.0%
GCAAAAAAGTGGGAAGTTTG+AGG - chr1_1:29978240-29978259 None:intergenic 40.0%
CGCCAGAATAAGCAAAAAAG+TGG - chr1_1:29978251-29978270 None:intergenic 40.0%
ATTCGTGCATCGTAGGTATT+AGG - chr1_1:29978297-29978316 None:intergenic 40.0%
!! CAAAGGTGTTCGTGTTTCAT+AGG - chr1_1:29978352-29978371 None:intergenic 40.0%
CTATGAAACACGAACACCTT+TGG + chr1_1:29978350-29978369 Msa0017940:intron 40.0%
CACTCTTTGGACGTATCTAT+GGG + chr1_1:29978475-29978494 Msa0017940:intron 40.0%
ACTCTTTGGACGTATCTATG+GGG + chr1_1:29978476-29978495 Msa0017940:intron 40.0%
! ATTAGATGTAGGGGTGTGAA+TGG + chr1_1:29978596-29978615 Msa0017940:intron 40.0%
! ATAGGGGTGTGCATAAAAAC+CGG - chr1_1:29979073-29979092 None:intergenic 40.0%
CAACATGTCTGCATCATGTT+AGG + chr1_1:29979219-29979238 Msa0017940:intron 40.0%
GGTAGGAAATATGATAGCTG+AGG + chr1_1:29979373-29979392 Msa0017940:intron 40.0%
!! GTTGAGTAAGGTTGGTAGAA+AGG + chr1_1:29979397-29979416 Msa0017940:intron 40.0%
CTCACTGTCTGTAACAAAGT+AGG - chr1_1:29979510-29979529 None:intergenic 40.0%
CGTTGAATTTGAGAACTGCA+AGG + chr1_1:29979538-29979557 Msa0017940:intron 40.0%
CTAGAGGACGCAATTAGAAA+CGG + chr1_1:29979702-29979721 Msa0017940:intron 40.0%
ACTGAAGATTGCAGCACTTA+AGG + chr1_1:29979803-29979822 Msa0017940:intron 40.0%
TGGCAATATCATCAAGGTAC+TGG - chr1_1:29979854-29979873 None:intergenic 40.0%
GATGATATTGCCATCTTGAC+AGG + chr1_1:29979861-29979880 Msa0017940:intron 40.0%
ACAGTACCTGTAAGCGAATT+AGG - chr1_1:29980000-29980019 None:intergenic 40.0%
! TACAGGTACTGTTATCAGAG+AGG + chr1_1:29980008-29980027 Msa0017940:intron 40.0%
GACTTAGCTTAGACAAAGCT+GGG + chr1_1:29980037-29980056 Msa0017940:intron 40.0%
!! ACAACCACAATAGTTGGTGA+TGG + chr1_1:29980105-29980124 Msa0017940:intron 40.0%
ACTTCCATCACCAACTATTG+TGG - chr1_1:29980112-29980131 None:intergenic 40.0%
ACAATATTTAGGGAGTGGAG+AGG - chr1_1:29980209-29980228 None:intergenic 40.0%
!!! TGCGAAATATTTTGGCCTGA+TGG + chr1_1:29980294-29980313 Msa0017940:intron 40.0%
!!! ATATTTTGGCCTGATGGTGT+TGG + chr1_1:29980300-29980319 Msa0017940:intron 40.0%
CTAAATTAGCCCACCCAAAT+TGG - chr1_1:29980382-29980401 None:intergenic 40.0%
AAAAGGAGAAGCTGAACGAA+AGG + chr1_1:29980505-29980524 Msa0017940:intron 40.0%
GAAAGGATTGCAAAACTGTC+TGG + chr1_1:29980522-29980541 Msa0017940:intron 40.0%
TTCAACGAGTTCACTGAGAT+GGG - chr1_1:29980578-29980597 None:intergenic 40.0%
TTTCAACGAGTTCACTGAGA+TGG - chr1_1:29980579-29980598 None:intergenic 40.0%
ACAAACTGAGACAGAACTCA+AGG + chr1_1:29980685-29980704 Msa0017940:intron 40.0%
TTTGCTCAGACTTGCATCAA+AGG + chr1_1:29980868-29980887 Msa0017940:intron 40.0%
ATCAAAGGTGGATGCAATCA+AGG + chr1_1:29980883-29980902 Msa0017940:intron 40.0%
TCCAACGACAATACGAGATA+CGG + chr1_1:29981297-29981316 Msa0017940:intron 40.0%
TACGGATATAATGCTGCAAC+TGG + chr1_1:29981315-29981334 Msa0017940:intron 40.0%
TGGGATCATTGATCCAACAA+AGG + chr1_1:29981362-29981381 Msa0017940:intron 40.0%
!! CAGATTTGTTGAAGTGTCAC+TGG + chr1_1:29981653-29981672 Msa0017940:intron 40.0%
!! GAAGTGTCACTGGACTTTTA+CGG + chr1_1:29981663-29981682 Msa0017940:intron 40.0%
ATTAATGGCGAGCAATTTCG+AGG - chr1_1:29982063-29982082 None:intergenic 40.0%
!! TCATCACATTCGGTTTGTTG+TGG + chr1_1:29982160-29982179 Msa0017940:intron 40.0%
!! CATCACATTCGGTTTGTTGT+GGG + chr1_1:29982161-29982180 Msa0017940:intron 40.0%
TTGCTTATATTTGTGACCGG+AGG + chr1_1:29982305-29982324 Msa0017940:intron 40.0%
TGCTTATATTTGTGACCGGA+GGG + chr1_1:29982306-29982325 Msa0017940:intron 40.0%
AGAGAAGGGGTAACATATAC+AGG - chr1_1:29982415-29982434 None:intergenic 40.0%
AGCGAAGAAAATGGAGAGAA+GGG - chr1_1:29982429-29982448 None:intergenic 40.0%
GTCCAGCAGAGAAATCAAAA+AGG + chr1_1:29982449-29982468 Msa0017940:intron 40.0%
!!! CACCTTTTTGATTTCTCTGC+TGG - chr1_1:29982454-29982473 None:intergenic 40.0%
! CAATTTCTTCAGTTTGGTGG+AGG - chr1_1:29982516-29982535 None:intergenic 40.0%
GCTCAATTTCTTCAGTTTGG+TGG - chr1_1:29982519-29982538 None:intergenic 40.0%
GAGTTAGCAAAGAGAGAGAT+AGG - chr1_1:29982550-29982569 None:intergenic 40.0%
AGTGTAGTGTCACACATAGA+AGG - chr1_1:29982734-29982753 None:intergenic 40.0%
TGTTGAGATAAAGGAACCTG+AGG + chr1_1:29982893-29982912 Msa0017940:intron 40.0%
CGAATCCTAGGAGAAAAGAA+AGG - chr1_1:29983286-29983305 None:intergenic 40.0%
AAGTCCAAATGTAGGACAGA+CGG + chr1_1:29983403-29983422 Msa0017940:intron 40.0%
! AACTGTTTTGTACGTGTTCC+CGG + chr1_1:29983523-29983542 Msa0017940:intron 40.0%
AACCTCTCCGAGATTATTTC+CGG - chr1_1:29983545-29983564 None:intergenic 40.0%
TGGCAACATCAAATCCTTCA+CGG - chr1_1:29983817-29983836 None:intergenic 40.0%
CCAAATAACAGCATGATCCT+AGG - chr1_1:29984099-29984118 None:intergenic 40.0%
CCTAGGATCATGCTGTTATT+TGG + chr1_1:29984096-29984115 Msa0017940:intron 40.0%
AAACCTTGGTAAGATTCACC+AGG + chr1_1:29984278-29984297 Msa0017940:intron 40.0%
TTTCCTGGTGAATCTTACCA+AGG - chr1_1:29984284-29984303 None:intergenic 40.0%
TAAGCTGAGTGATTGTTTCC+TGG - chr1_1:29984299-29984318 None:intergenic 40.0%
ACAGCAACCACGTTAACTTA+TGG + chr1_1:29984322-29984341 Msa0017940:intron 40.0%
TTGTGTGGAATTGGGAGAAA+TGG - chr1_1:29985479-29985498 None:intergenic 40.0%
TTAATGATGCCATGGTTGTG+TGG - chr1_1:29985494-29985513 None:intergenic 40.0%
TGGGAATGAAGAAATGGAAG+CGG - chr1_1:29985544-29985563 None:intergenic 40.0%
ATGATTGTGAATAACCCACC+TGG - chr1_1:29985692-29985711 None:intergenic 40.0%
TGTGAACAAGCTTGCAGATT+TGG + chr1_1:29985786-29985805 Msa0017940:CDS 40.0%
! AACAAGCTTGCAGATTTGGT+TGG + chr1_1:29985790-29985809 Msa0017940:CDS 40.0%
!! GATTTGGTTGGTGTTACTCT+TGG + chr1_1:29977292-29977311 Msa0017940:intron 40.0%
AGAACAACATTCCTTCCCTT+AGG - chr1_1:29977319-29977338 None:intergenic 40.0%
GTTGTTCTTGAGAGCAAGTA+TGG + chr1_1:29977331-29977350 Msa0017940:intron 40.0%
!!! GTAGGGTGTTTGTTTTGATG+TGG + chr1_1:29986087-29986106 Msa0017940:intron 40.0%
!!! AGGGTGTTTGTTTTGATGTG+GGG + chr1_1:29986089-29986108 Msa0017940:intron 40.0%
!! GTTTTGATGTGGGGTGTTTA+AGG + chr1_1:29986098-29986117 Msa0017940:intron 40.0%
!!! GTGGAGTGTTTGTTTTGATG+TGG + chr1_1:29977709-29977728 Msa0017940:intron 40.0%
!!! GGAGTGTTTGTTTTGATGTG+GGG + chr1_1:29986225-29986244 Msa0017940:intron 40.0%
!!! TGTTTTGATGTGGGGTGTTT+AGG + chr1_1:29986097-29986116 Msa0017940:intron 40.0%
!! GTTTTGATGTGGGGTGTTTA+GGG + chr1_1:29986098-29986117 Msa0017940:intron 40.0%
TTGCATTTGCGTTCAAAAGG+TGG + chr1_1:29986326-29986345 Msa0017940:intron 40.0%
! TGGTGCTAAATTGGTTAGAC+AGG + chr1_1:29977860-29977879 Msa0017940:intron 40.0%
TGCTAAATTGGTTAGACAGG+CGG + chr1_1:29977863-29977882 Msa0017940:intron 40.0%
TGCCAAATCATTTGTCTTGG+CGG - chr1_1:29977889-29977908 None:intergenic 40.0%
! ATTTTTATTCCACGGGCTTC+TGG + chr1_1:29986728-29986747 Msa0017940:intron 40.0%
! TATGAAGCACTAACGCCTTT+GGG + chr1_1:29986821-29986840 Msa0017940:intron 40.0%
GCTAAGCAATGTAATCCCAA+AGG - chr1_1:29986839-29986858 None:intergenic 40.0%
!! ACACAAACACCTTTGGGATT+AGG + chr1_1:29986875-29986894 Msa0017940:intron 40.0%
TCTTTGCTTCAACATGCCTT+AGG + chr1_1:29986988-29987007 Msa0017940:intron 40.0%
!! ATGTGTTCAAGGAGTACCTA+AGG - chr1_1:29987007-29987026 None:intergenic 40.0%
TACTCCTTGAACACATCTGT+GGG + chr1_1:29987011-29987030 Msa0017940:intron 40.0%
GGTTGTGTACGGATAAATGA+AGG + chr1_1:29987112-29987131 Msa0017940:intron 40.0%
ACGATTCAAAATCGGTGAAC+TGG + chr1_1:29987297-29987316 Msa0017940:intron 40.0%
! ATAGGGGTGTGCATAAAAAC+CGG - chr1_1:29979073-29979092 None:intergenic 40.0%
TATAACACACACACACACAC+AGG + chr1_1:29987728-29987747 Msa0017940:intron 40.0%
CAACATGTCTGCATCATGTT+AGG + chr1_1:29979219-29979238 Msa0017940:intron 40.0%
GGTAGGAAATATGATAGCTG+AGG + chr1_1:29979373-29979392 Msa0017940:intron 40.0%
!! GTTGAGTAAGGTTGGTAGAA+AGG + chr1_1:29979397-29979416 Msa0017940:intron 40.0%
CTCACTGTCTGTAACAAAGT+AGG - chr1_1:29979510-29979529 None:intergenic 40.0%
CGTTGAATTTGAGAACTGCA+AGG + chr1_1:29979538-29979557 Msa0017940:intron 40.0%
CTAGAGGACGCAATTAGAAA+CGG + chr1_1:29979702-29979721 Msa0017940:intron 40.0%
ACTGAAGATTGCAGCACTTA+AGG + chr1_1:29979803-29979822 Msa0017940:intron 40.0%
TGGCAATATCATCAAGGTAC+TGG - chr1_1:29979854-29979873 None:intergenic 40.0%
GATGATATTGCCATCTTGAC+AGG + chr1_1:29979861-29979880 Msa0017940:intron 40.0%
!!! TCCTTTTTTGGTTTAGCGGT+TGG + chr1_1:29988522-29988541 Msa0017940:intron 40.0%
ACCAACCGCTAAACCAAAAA+AGG - chr1_1:29988526-29988545 None:intergenic 40.0%
!! ACAACCACAATAGTTGGTGA+TGG + chr1_1:29980105-29980124 Msa0017940:intron 40.0%
ACTTCCATCACCAACTATTG+TGG - chr1_1:29980112-29980131 None:intergenic 40.0%
TCGCTTTGTAACTGCTTCTT+GGG - chr1_1:29988700-29988719 None:intergenic 40.0%
AAGAGAGGGAAACCTCTATT+TGG - chr1_1:29988740-29988759 None:intergenic 40.0%
!! ATTTTTAAGGGGTGGAGAGA+CGG - chr1_1:29988770-29988789 None:intergenic 40.0%
GAAAGGATTGCAAAACTGTC+TGG + chr1_1:29980522-29980541 Msa0017940:intron 40.0%
ACAAACTGAGACAGAACTCA+AGG + chr1_1:29980685-29980704 Msa0017940:intron 40.0%
GAGCTTATCGAACCAGTAAA+AGG - chr1_1:29989330-29989349 None:intergenic 40.0%
TACAATACCCTCTTCAACAG+CGG - chr1_1:29989373-29989392 None:intergenic 40.0%
!! GTTGAAGAGGGTATTGTAGT+TGG + chr1_1:29989375-29989394 Msa0017940:CDS 40.0%
TTTGCTCAGACTTGCATCAA+AGG + chr1_1:29980868-29980887 Msa0017940:intron 40.0%
TATGGATATAATGCTGCCAC+TGG + chr1_1:29989842-29989861 Msa0017940:CDS 40.0%
TGGGATCATTGATCCTACAA+AGG + chr1_1:29989889-29989908 Msa0017940:CDS 40.0%
TTGGTTTCGTACCAAATACG+AGG + chr1_1:29990030-29990049 Msa0017940:intron 40.0%
! GTCTCACTGGACTTTTAATG+TGG + chr1_1:29990153-29990172 Msa0017940:intron 40.0%
AGGCAGAAACATGCACAATA+AGG - chr1_1:29990279-29990298 None:intergenic 40.0%
TAAGCATTCACACGCATAGA+AGG - chr1_1:29990299-29990318 None:intergenic 40.0%
AGGCAGAAACATGCACAATA+AGG - chr1_1:29990279-29990298 None:intergenic 40.0%
TGTTGAGATAAAGGAACCTG+AGG + chr1_1:29982893-29982912 Msa0017940:intron 40.0%
CGAATCCTAGGAGAAAAGAA+AGG - chr1_1:29983286-29983305 None:intergenic 40.0%
ACTTCTACATACCGAATCCT+AGG - chr1_1:29990995-29991014 None:intergenic 40.0%
! TAGGATTCGGTATGTAGAAG+TGG + chr1_1:29990994-29991013 Msa0017940:intron 40.0%
TTCCGATGTGATACACAATC+TGG + chr1_1:29991056-29991075 Msa0017940:three_prime_UTR 40.0%
! ACTCTAGTTCGTTACACTAC+AGG - chr1_1:29991126-29991145 None:intergenic 40.0%
CATGTTCCTGGAAAAAAGCT+TGG + chr1_1:29991235-29991254 Msa0017940:three_prime_UTR 40.0%
! GAATTGGTAGTTACTGCGAT+CGG + chr1_1:29991291-29991310 Msa0017940:three_prime_UTR 40.0%
TTGCTCGGAATTGAGAATGG+AGG - chr1_1:29976902-29976921 None:intergenic 45.0%
GGCTAGGGTTTAAGAGGATT+TGG - chr1_1:29976945-29976964 None:intergenic 45.0%
AATGGTGGCTAGGGTTTAAG+AGG - chr1_1:29976951-29976970 None:intergenic 45.0%
TGGGAATGAAGAAATGGCAG+CGG - chr1_1:29977035-29977054 None:intergenic 45.0%
GAAATACAACTCCTTGGCCA+TGG - chr1_1:29977131-29977150 None:intergenic 45.0%
TTCCGCTATCAAGAAACTCC+AGG + chr1_1:29977162-29977181 Msa0017940:intron 45.0%
CACCTGGAGTTTCTTGATAG+CGG - chr1_1:29977167-29977186 None:intergenic 45.0%
GCTATCAAGAAACTCCAGGT+GGG + chr1_1:29977166-29977185 Msa0017940:intron 45.0%
GAATGGTGTGAACAAGCTTG+CGG + chr1_1:29977270-29977289 Msa0017940:intron 45.0%
TGTGAACAAGCTTGCGGATT+TGG + chr1_1:29977276-29977295 Msa0017940:intron 45.0%
! AACAAGCTTGCGGATTTGGT+TGG + chr1_1:29977280-29977299 Msa0017940:intron 45.0%
!! TGGTGTTACTCTTGGTCCTA+AGG + chr1_1:29977300-29977319 Msa0017940:intron 45.0%
!! GGTGTTACTCTTGGTCCTAA+GGG + chr1_1:29977301-29977320 Msa0017940:intron 45.0%
TTACTCTTGGTCCTAAGGGA+AGG + chr1_1:29977305-29977324 Msa0017940:intron 45.0%
ACTCTAAACACACACCTCTC+TGG - chr1_1:29977392-29977411 None:intergenic 45.0%
CGTTAAAAAGGTGGAGTTGG+AGG + chr1_1:29977821-29977840 Msa0017940:intron 45.0%
AGCCGCCAAGACAAATGATT+TGG + chr1_1:29977884-29977903 Msa0017940:intron 45.0%
! GCCAAGACAAATGATTTGGC+AGG + chr1_1:29977888-29977907 Msa0017940:intron 45.0%
GCCTGCCAAATCATTTGTCT+TGG - chr1_1:29977892-29977911 None:intergenic 45.0%
! ACAAATGATTTGGCAGGCGA+TGG + chr1_1:29977894-29977913 Msa0017940:intron 45.0%
!!! TACCTCTGTTGTTTTGGCTC+AGG + chr1_1:29977923-29977942 Msa0017940:intron 45.0%
!!! ACCTCTGTTGTTTTGGCTCA+GGG + chr1_1:29977924-29977943 Msa0017940:intron 45.0%
TACCACGTGTGATAAGCACA+GGG - chr1_1:29978101-29978120 None:intergenic 45.0%
ATACCACGTGTGATAAGCAC+AGG - chr1_1:29978102-29978121 None:intergenic 45.0%
TACGATGCACGAATGCCTTT+GGG + chr1_1:29978303-29978322 Msa0017940:intron 45.0%
!! ACACGAACACCTTTGGGATT+AGG + chr1_1:29978357-29978376 Msa0017940:intron 45.0%
CCTAAGGTGTGTTGAAGCAA+AGG - chr1_1:29978455-29978474 None:intergenic 45.0%
CCTTTGCTTCAACACACCTT+AGG + chr1_1:29978452-29978471 Msa0017940:intron 45.0%
AACACACCTTAGGCACTCTT+TGG + chr1_1:29978462-29978481 Msa0017940:intron 45.0%
!! ATACGTCCAAAGAGTGCCTA+AGG - chr1_1:29978471-29978490 None:intergenic 45.0%
GCACTCTTTGGACGTATCTA+TGG + chr1_1:29978474-29978493 Msa0017940:intron 45.0%
CAGAAGAGGGGTTGTGAAAT+GGG + chr1_1:29978908-29978927 Msa0017940:intron 45.0%
TATAACACACCCACACACAC+AGG + chr1_1:29979162-29979181 Msa0017940:intron 45.0%
ACATTGACACCTGTGTGTGT+GGG - chr1_1:29979174-29979193 None:intergenic 45.0%
GTTGTGGTTGTGTGAATTGC+AGG + chr1_1:29979295-29979314 Msa0017940:intron 45.0%
GTTGTGTGAATTGCAGGTTG+AGG + chr1_1:29979301-29979320 Msa0017940:intron 45.0%
! GCAGGTTGAGGATAGTGAAT+TGG + chr1_1:29979313-29979332 Msa0017940:intron 45.0%
GGATAGTGAATTGGCTGATG+TGG + chr1_1:29979322-29979341 Msa0017940:intron 45.0%
TAGTGCAGGGAACAATCATG+AGG + chr1_1:29979352-29979371 Msa0017940:intron 45.0%
GATATTGCCATCTTGACAGG+AGG + chr1_1:29979864-29979883 Msa0017940:intron 45.0%
! AGGTACTGTTATCAGAGAGG+AGG + chr1_1:29980011-29980030 Msa0017940:intron 45.0%
ACTGTTATCAGAGAGGAGGT+TGG + chr1_1:29980015-29980034 Msa0017940:intron 45.0%
GGACTTAGCTTAGACAAAGC+TGG + chr1_1:29980036-29980055 Msa0017940:intron 45.0%
CTTAGACAAAGCTGGGAATG+AGG + chr1_1:29980044-29980063 Msa0017940:intron 45.0%
AAAGCTGGGAATGAGGTTCT+AGG + chr1_1:29980051-29980070 Msa0017940:intron 45.0%
! TCGCTTGGTAACTGCTTCTT+GGG - chr1_1:29980136-29980155 None:intergenic 45.0%
ATATTTAGGGAGTGGAGAGG+CGG - chr1_1:29980206-29980225 None:intergenic 45.0%
GAATCAAACCTGAGACCTTG+AGG - chr1_1:29980350-29980369 None:intergenic 45.0%
AGGATTGCAAAACTGTCTGG+CGG + chr1_1:29980525-29980544 Msa0017940:intron 45.0%
TACAATACCCTCCTCAACAG+CGG - chr1_1:29980831-29980850 None:intergenic 45.0%
!! GTTGAGGAGGGTATTGTAGT+TGG + chr1_1:29980833-29980852 Msa0017940:intron 45.0%
AATTAAAACGTGGCGCAGGT+TGG + chr1_1:29981097-29981116 Msa0017940:intron 45.0%
! TGGCAGTGTTGTTAGTGAGA+AGG + chr1_1:29981186-29981205 Msa0017940:intron 45.0%
TCCGTATCTCGTATTGTCGT+TGG - chr1_1:29981301-29981320 None:intergenic 45.0%
AGGGCCCGCATCATTATAAA+TGG + chr1_1:29981488-29981507 Msa0017940:intron 45.0%
! CTGGACTTTTACGGTGTGTT+TGG + chr1_1:29981672-29981691 Msa0017940:intron 45.0%
GCGAAGAAAATGGAGAGAAG+GGG - chr1_1:29982428-29982447 None:intergenic 45.0%
CAGCGAAGAAAATGGAGAGA+AGG - chr1_1:29982430-29982449 None:intergenic 45.0%
CATAGAAGGCAGAAACATGC+AGG - chr1_1:29982720-29982739 None:intergenic 45.0%
TTGTCCATTGGGTTACCAAC+AGG - chr1_1:29982924-29982943 None:intergenic 45.0%
GGTAACCCAATGGACAATTC+AGG + chr1_1:29982927-29982946 Msa0017940:intron 45.0%
! CTCTGCCTTTCTTTTCTCCT+AGG + chr1_1:29983278-29983297 Msa0017940:intron 45.0%
ACTTCTACATGCCGAATCCT+AGG - chr1_1:29983298-29983317 None:intergenic 45.0%
TAGGATTCGGCATGTAGAAG+TGG + chr1_1:29983297-29983316 Msa0017940:intron 45.0%
AAGTGGCGGCTGCTTAAAAT+GGG + chr1_1:29983314-29983333 Msa0017940:intron 45.0%
GTAGGACCAAGTCCAAATGT+AGG + chr1_1:29983395-29983414 Msa0017940:intron 45.0%
GTCTGTCCTACATTTGGACT+TGG - chr1_1:29983404-29983423 None:intergenic 45.0%
CGTGTTCCCGGAAATAATCT+CGG + chr1_1:29983535-29983554 Msa0017940:intron 45.0%
ACCTCTCCGAGATTATTTCC+GGG - chr1_1:29983544-29983563 None:intergenic 45.0%
GGCAACATCAAATCCTTCAC+GGG - chr1_1:29983816-29983835 None:intergenic 45.0%
ATTAGTCGTCCACCTTTGGT+TGG - chr1_1:29983905-29983924 None:intergenic 45.0%
AATACCGGGTTCGATTCCTA+GGG - chr1_1:29983972-29983991 None:intergenic 45.0%
! GATCTCTAGTCTGGTTCAAG+TGG - chr1_1:29984190-29984209 None:intergenic 45.0%
GGCTAGGGTTTAAGAGGATT+TGG - chr1_1:29976945-29976964 None:intergenic 45.0%
AATGGTGGCTAGGGTTTAAG+AGG - chr1_1:29976951-29976970 None:intergenic 45.0%
ATTGGGAGAAATGGTGGCTA+GGG - chr1_1:29985470-29985489 None:intergenic 45.0%
AATTGGGAGAAATGGTGGCT+AGG - chr1_1:29985471-29985490 None:intergenic 45.0%
TGTGGAATTGGGAGAAATGG+TGG - chr1_1:29985476-29985495 None:intergenic 45.0%
TGCCATGGTTGTGTGGAATT+GGG - chr1_1:29985487-29985506 None:intergenic 45.0%
ATGCCATGGTTGTGTGGAAT+TGG - chr1_1:29985488-29985507 None:intergenic 45.0%
GAATGAAGAAATGGAAGCGG+AGG - chr1_1:29985541-29985560 None:intergenic 45.0%
!!! GGTACTGGTAGTTTTTCTGC+GGG - chr1_1:29985577-29985596 None:intergenic 45.0%
!!! CGGTACTGGTAGTTTTTCTG+CGG - chr1_1:29985578-29985597 None:intergenic 45.0%
! TTTAAGGTTCCGACTCTTCC+TGG - chr1_1:29985610-29985629 None:intergenic 45.0%
TTCCGCTATCAAGAAACTCC+AGG + chr1_1:29977162-29977181 Msa0017940:intron 45.0%
CACCTGGAGTTTCTTGATAG+CGG - chr1_1:29977167-29977186 None:intergenic 45.0%
GCTATCAAGAAACTCCAGGT+GGG + chr1_1:29977166-29977185 Msa0017940:intron 45.0%
!! TGGTGTTACTCTTGGTCCTA+AGG + chr1_1:29977300-29977319 Msa0017940:intron 45.0%
!! GGTGTTACTCTTGGTCCTAA+GGG + chr1_1:29977301-29977320 Msa0017940:intron 45.0%
TTACTCTTGGTCCTAAGGGA+AGG + chr1_1:29977305-29977324 Msa0017940:intron 45.0%
TTGCGTTCAAAAGGTGGAGT+TGG + chr1_1:29986332-29986351 Msa0017940:intron 45.0%
GAGGATCCGGTTGAGAATAT+TGG + chr1_1:29986354-29986373 Msa0017940:CDS 45.0%
! GCCAAGACAAATGATTTGGC+AGG + chr1_1:29977888-29977907 Msa0017940:intron 45.0%
GCCTGCCAAATCATTTGTCT+TGG - chr1_1:29977892-29977911 None:intergenic 45.0%
! ACAAATGATTTGGCAGGCGA+TGG + chr1_1:29977894-29977913 Msa0017940:intron 45.0%
!!! ACCTCTGTTGTTTTGGCTCA+AGG + chr1_1:29977924-29977943 Msa0017940:intron 45.0%
ACCTTGAGCCAAAACAACAG+AGG - chr1_1:29986442-29986461 None:intergenic 45.0%
!! GCTCAAGGTCTTATTGCAGA+AGG + chr1_1:29986453-29986472 Msa0017940:CDS 45.0%
TACCACGTGTGATAAGCACA+GGG - chr1_1:29978101-29978120 None:intergenic 45.0%
ATACCACGTGTGATAAGCAC+AGG - chr1_1:29978102-29978121 None:intergenic 45.0%
! CTATGAAGCACTAACGCCTT+TGG + chr1_1:29986820-29986839 Msa0017940:intron 45.0%
GAGACAAAGCCTAATCCCAA+AGG - chr1_1:29986887-29986906 None:intergenic 45.0%
GTACTCCTTGAACACATCTG+TGG + chr1_1:29987010-29987029 Msa0017940:intron 45.0%
ACTCCTTGAACACATCTGTG+GGG + chr1_1:29987012-29987031 Msa0017940:intron 45.0%
TAACCCCACAGATGTGTTCA+AGG - chr1_1:29987018-29987037 None:intergenic 45.0%
! TTTAGATGTAGGGGTGTGCA+TGG + chr1_1:29987186-29987205 Msa0017940:intron 45.0%
CAGAAGAGGGGTTGTGAAAT+GGG + chr1_1:29978908-29978927 Msa0017940:intron 45.0%
GTTGTGGTTGTGTGAATTGC+AGG + chr1_1:29979295-29979314 Msa0017940:intron 45.0%
GTTGTGTGAATTGCAGGTTG+AGG + chr1_1:29979301-29979320 Msa0017940:intron 45.0%
! GCAGGTTGAGGATAGTGAAT+TGG + chr1_1:29979313-29979332 Msa0017940:intron 45.0%
GGATAGTGAATTGGCTGATG+TGG + chr1_1:29979322-29979341 Msa0017940:intron 45.0%
TAGTGCAGGGAACAATCATG+AGG + chr1_1:29979352-29979371 Msa0017940:intron 45.0%
!! AAAGGGTGTCGTTACACTTG+AGG + chr1_1:29987981-29988000 Msa0017940:CDS 45.0%
GATATTGCCATCTTGACAGG+AGG + chr1_1:29979864-29979883 Msa0017940:intron 45.0%
! AGGTACTGTTATCAGAGAGG+AGG + chr1_1:29980011-29980030 Msa0017940:intron 45.0%
ACTGTTATCAGAGAGGAGGT+TGG + chr1_1:29980015-29980034 Msa0017940:intron 45.0%
GCCTTAGCTTAGACAAAGCT+GGG + chr1_1:29988601-29988620 Msa0017940:CDS 45.0%
! TCCCAGCTTTGTCTAAGCTA+AGG - chr1_1:29980041-29980060 None:intergenic 45.0%
CTTAGACAAAGCTGGGAATG+AGG + chr1_1:29980044-29980063 Msa0017940:intron 45.0%
AAAGCTGGGAATGAGGTTCT+AGG + chr1_1:29980051-29980070 Msa0017940:intron 45.0%
CTCGCTTTGTAACTGCTTCT+TGG - chr1_1:29988701-29988720 None:intergenic 45.0%
!! TTTTTAAGGGGTGGAGAGAC+GGG - chr1_1:29988769-29988788 None:intergenic 45.0%
GTATGTATGCAGCATACGAG+TGG + chr1_1:29988919-29988938 Msa0017940:intron 45.0%
AGGATTGCAAAACTGTCTGG+TGG + chr1_1:29980525-29980544 Msa0017940:intron 45.0%
AGACGCTCTTAACGCTACAA+AGG + chr1_1:29989269-29989288 Msa0017940:CDS 45.0%
!! GAAGAGGGTATTGTAGTTGG+TGG + chr1_1:29989378-29989397 Msa0017940:CDS 45.0%
!! AGGGTATTGTAGTTGGTGGT+GGG + chr1_1:29989382-29989401 Msa0017940:CDS 45.0%
AATTAAAACGCGACGCAGGT+TGG + chr1_1:29989633-29989652 Msa0017940:intron 45.0%
! TGGCAGTGTTGTTAGTGAGA+AGG + chr1_1:29981186-29981205 Msa0017940:intron 45.0%
TCCAACGACGATACGAGATA+TGG + chr1_1:29989824-29989843 Msa0017940:CDS 45.0%
TCCATATCTCGTATCGTCGT+TGG - chr1_1:29989828-29989847 None:intergenic 45.0%
AGGGCCCGCATCATTATAAA+TGG + chr1_1:29981488-29981507 Msa0017940:intron 45.0%
! GAAGCATCCTAATCTTGTCC+AGG + chr1_1:29990487-29990506 Msa0017940:intron 45.0%
CTAACCACCTGGACAAGATT+AGG - chr1_1:29990497-29990516 None:intergenic 45.0%
CATTCGAATCGTCGAGTTTG+CGG + chr1_1:29990651-29990670 Msa0017940:intron 45.0%
! CTCTGCCTTTCTTTTCTCCT+AGG + chr1_1:29983278-29983297 Msa0017940:intron 45.0%
! GATTCGGTATGTAGAAGTGG+CGG + chr1_1:29990997-29991016 Msa0017940:exon 45.0%
AAGTGGCGGCTGCTTAAAAT+GGG + chr1_1:29983314-29983333 Msa0017940:intron 45.0%
GTAGGACCAAGTCCAAATGT+AGG + chr1_1:29983395-29983414 Msa0017940:intron 45.0%
GTCAGTCCTACATTTGGACT+TGG - chr1_1:29991102-29991121 None:intergenic 45.0%
ACAGGAGTCAGTCCTACATT+TGG - chr1_1:29991108-29991127 None:intergenic 45.0%
!!! AGCTCTCCAAGCTTTTTTCC+AGG - chr1_1:29991244-29991263 None:intergenic 45.0%
!!! TTAAAATTTTAAAAACAATT+TGG - chr1_1:29978967-29978986 None:intergenic 5.0%
!!! TTGTTTTTAAAATTTTAAAT+TGG + chr1_1:29978969-29978988 Msa0017940:intron 5.0%
!!! TATAAATATATTTTTGAATA+GGG - chr1_1:29981860-29981879 None:intergenic 5.0%
!! AAAAAATAAAAATAAAAAGA+TGG - chr1_1:29984413-29984432 None:intergenic 5.0%
!!! AAATTTTATTTAATTTAACA+TGG - chr1_1:29984621-29984640 None:intergenic 5.0%
!!! TTAAAATTTTAAAAACAATT+TGG - chr1_1:29978967-29978986 None:intergenic 5.0%
!!! TTGTTTTTAAAATTTTAAAT+TGG + chr1_1:29978969-29978988 Msa0017940:intron 5.0%
CTCTCAATTCCCTGCAACCA+TGG + chr1_1:29976973-29976992 Msa0017940:intron 50.0%
TGCATGATGCCATGGTTGCA+GGG - chr1_1:29976985-29977004 None:intergenic 50.0%
TTGCATGATGCCATGGTTGC+AGG - chr1_1:29976986-29977005 None:intergenic 50.0%
AAGAGAGGTTGCATGAGGAG+AGG - chr1_1:29977009-29977028 None:intergenic 50.0%
GAATGAAGAAATGGCAGCGG+AGG - chr1_1:29977032-29977051 None:intergenic 50.0%
! GTTGCTGGTGGTTTTTCTGC+GGG - chr1_1:29977068-29977087 None:intergenic 50.0%
! CGTTGCTGGTGGTTTTTCTG+CGG - chr1_1:29977069-29977088 None:intergenic 50.0%
TCGCTCTCACCAGGAAGAAT+CGG + chr1_1:29977089-29977108 Msa0017940:intron 50.0%
! TTTAGGGCTCCGATTCTTCC+TGG - chr1_1:29977101-29977120 None:intergenic 50.0%
TGGCCATGGCTGAGACTTTA+GGG - chr1_1:29977117-29977136 None:intergenic 50.0%
TTGGCCATGGCTGAGACTTT+AGG - chr1_1:29977118-29977137 None:intergenic 50.0%
TAAAGTCTCAGCCATGGCCA+AGG + chr1_1:29977117-29977136 Msa0017940:intron 50.0%
CGCTATCAAGAAACTCCAGG+TGG + chr1_1:29977165-29977184 Msa0017940:intron 50.0%
ATGATTGGGAAGAACCCACC+TGG - chr1_1:29977183-29977202 None:intergenic 50.0%
! TTCGTCCGAGTTTAGGGTCA+AGG + chr1_1:29977454-29977473 Msa0017940:intron 50.0%
! GTGGGGTGTTTGCTTTGATG+CGG + chr1_1:29977632-29977651 Msa0017940:intron 50.0%
ACCCTGAGCCAAAACAACAG+AGG - chr1_1:29977928-29977947 None:intergenic 50.0%
!! GCTCAGGGTCTTATTGCAGA+AGG + chr1_1:29977939-29977958 Msa0017940:intron 50.0%
AACCCTGTGCTTATCACACG+TGG + chr1_1:29978096-29978115 Msa0017940:intron 50.0%
!! CAAAGGCATTCGTGCATCGT+AGG - chr1_1:29978304-29978323 None:intergenic 50.0%
CTACGATGCACGAATGCCTT+TGG + chr1_1:29978302-29978321 Msa0017940:intron 50.0%
GCACGTAAGCCTAATCCCAA+AGG - chr1_1:29978369-29978388 None:intergenic 50.0%
GCAGAAGAGGGGTTGTGAAA+TGG + chr1_1:29978907-29978926 Msa0017940:intron 50.0%
GACATTGACACCTGTGTGTG+TGG - chr1_1:29979175-29979194 None:intergenic 50.0%
ATGTGGCAGCAGTTAGTGCA+GGG + chr1_1:29979339-29979358 Msa0017940:intron 50.0%
GCAGGGAACAATCATGAGGT+AGG + chr1_1:29979356-29979375 Msa0017940:intron 50.0%
!! GATAGCTGAGGCGTTGAGTA+AGG + chr1_1:29979385-29979404 Msa0017940:intron 50.0%
!! AAAGGGTGTCGTGACACTTG+AGG + chr1_1:29979415-29979434 Msa0017940:intron 50.0%
! GAGGGCATGCAATTTGATCG+AGG + chr1_1:29979473-29979492 Msa0017940:intron 50.0%
ATTGCAGCACTTAAGGCTCC+TGG + chr1_1:29979810-29979829 Msa0017940:intron 50.0%
GCACTTAAGGCTCCTGGATT+TGG + chr1_1:29979816-29979835 Msa0017940:intron 50.0%
CTCTTGCGTTCTCCAAATCC+AGG - chr1_1:29979831-29979850 None:intergenic 50.0%
!! GAATGAGGTTCTAGGCACTG+CGG + chr1_1:29980059-29980078 Msa0017940:intron 50.0%
ATCTTTGGTGAGCACCACCT+TGG - chr1_1:29980085-29980104 None:intergenic 50.0%
! CTCGCTTGGTAACTGCTTCT+TGG - chr1_1:29980137-29980156 None:intergenic 50.0%
GAGAGGGGGAAACCTCAATT+TGG - chr1_1:29980176-29980195 None:intergenic 50.0%
TATTTAGGGAGTGGAGAGGC+GGG - chr1_1:29980205-29980224 None:intergenic 50.0%
TCAAACCTGAGACCTTGAGG+AGG - chr1_1:29980347-29980366 None:intergenic 50.0%
GTCTCAGGTTTGATTCTCCG+CGG + chr1_1:29980354-29980373 Msa0017940:intron 50.0%
! ATTCTCCGCGGTGCCAATTT+GGG + chr1_1:29980366-29980385 Msa0017940:intron 50.0%
GGACGCTCTTAATGCCACAA+AGG + chr1_1:29980727-29980746 Msa0017940:intron 50.0%
TTACTTTCAGGCCGCTGTTG+AGG + chr1_1:29980817-29980836 Msa0017940:intron 50.0%
GCTCAGACTTGCATCAAAGG+TGG + chr1_1:29980871-29980890 Msa0017940:intron 50.0%
! TTTGTGACCGGAGGGTGTAT+TGG + chr1_1:29982314-29982333 Msa0017940:intron 50.0%
! TTGTGACCGGAGGGTGTATT+GGG + chr1_1:29982315-29982334 Msa0017940:intron 50.0%
CTGCTGGACAGCGAAGAAAA+TGG - chr1_1:29982438-29982457 None:intergenic 50.0%
! GAAGCATCCTACTGTTGTCC+AGG + chr1_1:29982803-29982822 Msa0017940:intron 50.0%
!! TGCACCTGTTGGTAACCCAA+TGG + chr1_1:29982917-29982936 Msa0017940:intron 50.0%
GATTCGGCATGTAGAAGTGG+CGG + chr1_1:29983300-29983319 Msa0017940:intron 50.0%
GAAGTGGCGGCTGCTTAAAA+TGG + chr1_1:29983313-29983332 Msa0017940:intron 50.0%
ACAGCCGTCTGTCCTACATT+TGG - chr1_1:29983410-29983429 None:intergenic 50.0%
TCCCGGAAATAATCTCGGAG+AGG + chr1_1:29983540-29983559 Msa0017940:intron 50.0%
! ACCTTTGGTTGGTCGGAAAC+CGG - chr1_1:29983894-29983913 None:intergenic 50.0%
CCAAAGGTGGACGACTAATC+CGG + chr1_1:29983906-29983925 Msa0017940:intron 50.0%
ATACCGGGTTCGATTCCTAG+GGG - chr1_1:29983971-29983990 None:intergenic 50.0%
GAATACCGGGTTCGATTCCT+AGG - chr1_1:29983973-29983992 None:intergenic 50.0%
TCTTCTTCCAAGGACGTACC+CGG - chr1_1:29983997-29984016 None:intergenic 50.0%
GTGGCAAGGATCTTCTTCCA+AGG - chr1_1:29984007-29984026 None:intergenic 50.0%
TGGAAGAAGATCCTTGCCAC+TGG + chr1_1:29984007-29984026 Msa0017940:intron 50.0%
! TCAAGTTGCTTGGGATCCAG+TGG - chr1_1:29984026-29984045 None:intergenic 50.0%
CTCCCAATTCCACACAACCA+TGG + chr1_1:29985482-29985501 Msa0017940:exon 50.0%
AAATGGAAGCGGAGGAAGAG+AGG - chr1_1:29985533-29985552 None:intergenic 50.0%
TTCTGCGGGTGGAAGAAGAT+GGG - chr1_1:29985563-29985582 None:intergenic 50.0%
TTTCTGCGGGTGGAAGAAGA+TGG - chr1_1:29985564-29985583 None:intergenic 50.0%
! ACTGGTAGTTTTTCTGCGGG+TGG - chr1_1:29985574-29985593 None:intergenic 50.0%
GAACCTTAAAGTCTCCGCCA+TGG + chr1_1:29985620-29985639 Msa0017940:CDS 50.0%
GAAATGCAACTCCTTGGCCA+TGG - chr1_1:29985640-29985659 None:intergenic 50.0%
CGCTATCAAGAAACTCCAGG+TGG + chr1_1:29977165-29977184 Msa0017940:intron 50.0%
!! TGGTGTCACTGTTGCCAAAG+AGG + chr1_1:29985885-29985904 Msa0017940:CDS 50.0%
CGTTCAAAAGGTGGAGTTGG+AGG + chr1_1:29986335-29986354 Msa0017940:intron 50.0%
AAAGGTGGAGTTGGAGGATC+CGG + chr1_1:29977827-29977846 Msa0017940:intron 50.0%
GGCCGCCAAGACAAATGATT+TGG + chr1_1:29986398-29986417 Msa0017940:CDS 50.0%
AACCCTGTGCTTATCACACG+TGG + chr1_1:29978096-29978115 Msa0017940:intron 50.0%
GCAGAAGAGGGGTTGTGAAA+TGG + chr1_1:29978907-29978926 Msa0017940:intron 50.0%
GAGGGGTTGTGAAATGGGTA+CGG + chr1_1:29978913-29978932 Msa0017940:intron 50.0%
ATGTGGCAGCAGTTAGTGCA+GGG + chr1_1:29979339-29979358 Msa0017940:intron 50.0%
GCAGGGAACAATCATGAGGT+AGG + chr1_1:29979356-29979375 Msa0017940:intron 50.0%
!! GATAGCTGAGGCGTTGAGTA+AGG + chr1_1:29979385-29979404 Msa0017940:intron 50.0%
!! GGTGTCGTTACACTTGAGGA+GGG + chr1_1:29987985-29988004 Msa0017940:CDS 50.0%
TCGTTACACTTGAGGAGGGA+AGG + chr1_1:29987989-29988008 Msa0017940:CDS 50.0%
! GAGGGCATGCAATTTGATCG+AGG + chr1_1:29979473-29979492 Msa0017940:intron 50.0%
ATTGCAGCACTTAAGGCTCC+TGG + chr1_1:29979810-29979829 Msa0017940:intron 50.0%
GCACTTAAGGCTCCTGGATT+TGG + chr1_1:29979816-29979835 Msa0017940:intron 50.0%
CTCTTGCGTTCTCCAAATCC+AGG - chr1_1:29979831-29979850 None:intergenic 50.0%
GGCCTTAGCTTAGACAAAGC+TGG + chr1_1:29988600-29988619 Msa0017940:CDS 50.0%
!! GAATGAGGTTCTAGGCACTG+CGG + chr1_1:29980059-29980078 Msa0017940:intron 50.0%
ATCTTTGGTGAGCACCACCT+TGG - chr1_1:29980085-29980104 None:intergenic 50.0%
GAGACGGGGAAAGAAAGAGA+GGG - chr1_1:29988754-29988773 None:intergenic 50.0%
AGAGACGGGGAAAGAAAGAG+AGG - chr1_1:29988755-29988774 None:intergenic 50.0%
!! TTTTAAGGGGTGGAGAGACG+GGG - chr1_1:29988768-29988787 None:intergenic 50.0%
! TGCAAAACTGTCTGGTGGTG+TGG + chr1_1:29989073-29989092 Msa0017940:CDS 50.0%
! TGGTGGTGTGGCTGTAATTC+AGG + chr1_1:29989085-29989104 Msa0017940:CDS 50.0%
CTTTAGGCCGCTGTTGAAGA+GGG + chr1_1:29989363-29989382 Msa0017940:intron 50.0%
!! GAGGGTATTGTAGTTGGTGG+TGG + chr1_1:29989381-29989400 Msa0017940:CDS 50.0%
GCTCAGACTTGCATCAAAGG+TGG + chr1_1:29980871-29980890 Msa0017940:intron 50.0%
GCATCCTAATCTTGTCCAGG+TGG + chr1_1:29990490-29990509 Msa0017940:intron 50.0%
CCAAGCAACATCTAACCACC+TGG - chr1_1:29990508-29990527 None:intergenic 50.0%
CCAGGTGGTTAGATGTTGCT+TGG + chr1_1:29990505-29990524 Msa0017940:intron 50.0%
TTGTCCATAGGGTTGCCAAC+AGG - chr1_1:29990608-29990627 None:intergenic 50.0%
GGCAACCCTATGGACAATTC+AGG + chr1_1:29990611-29990630 Msa0017940:CDS 50.0%
GAAGTGGCGGCTGCTTAAAA+TGG + chr1_1:29983313-29983332 Msa0017940:intron 50.0%
! TTGGTAGTTACTGCGATCGG+CGG + chr1_1:29991294-29991313 Msa0017940:three_prime_UTR 50.0%
GGAGAGGTTGCATGATGCCA+TGG - chr1_1:29976993-29977012 None:intergenic 55.0%
GGAGGAAGAGAGGTTGCATG+AGG - chr1_1:29977014-29977033 None:intergenic 55.0%
AAATGGCAGCGGAGGAAGAG+AGG - chr1_1:29977024-29977043 None:intergenic 55.0%
TTCTGCGGGCGGAAGAAGAT+GGG - chr1_1:29977054-29977073 None:intergenic 55.0%
TTTCTGCGGGCGGAAGAAGA+TGG - chr1_1:29977055-29977074 None:intergenic 55.0%
GAGCCCTAAAGTCTCAGCCA+TGG + chr1_1:29977111-29977130 Msa0017940:intron 55.0%
!! TGGTGTCACTGTTGCCAGAG+AGG + chr1_1:29977375-29977394 Msa0017940:intron 55.0%
GATGTGGCAGCAGTTAGTGC+AGG + chr1_1:29979338-29979357 Msa0017940:intron 55.0%
!! GCTGAGGCGTTGAGTAAGGT+TGG + chr1_1:29979389-29979408 Msa0017940:intron 55.0%
! GGTGTCGTGACACTTGAGGA+GGG + chr1_1:29979419-29979438 Msa0017940:intron 55.0%
TCGTGACACTTGAGGAGGGA+AGG + chr1_1:29979423-29979442 Msa0017940:intron 55.0%
ATTTAGGGAGTGGAGAGGCG+GGG - chr1_1:29980204-29980223 None:intergenic 55.0%
!! TTGGCCTGATGGTGTTGGCT+TGG + chr1_1:29980305-29980324 Msa0017940:intron 55.0%
!! TGGCCTGATGGTGTTGGCTT+GGG + chr1_1:29980306-29980325 Msa0017940:intron 55.0%
!! ATGGTGTTGGCTTGGGACCT+TGG + chr1_1:29980313-29980332 Msa0017940:intron 55.0%
! TTGAGGAGGAGCACACTCCA+AGG - chr1_1:29980333-29980352 None:intergenic 55.0%
TTGGAGTGTGCTCCTCCTCA+AGG + chr1_1:29980332-29980351 Msa0017940:intron 55.0%
! GATTCTCCGCGGTGCCAATT+TGG + chr1_1:29980365-29980384 Msa0017940:intron 55.0%
TGCAAAACTGTCTGGCGGTG+TGG + chr1_1:29980530-29980549 Msa0017940:intron 55.0%
TGGCGGTGTGGCTGTAATTC+AGG + chr1_1:29980542-29980561 Msa0017940:intron 55.0%
TTTCAGGCCGCTGTTGAGGA+GGG + chr1_1:29980821-29980840 Msa0017940:intron 55.0%
! TGTGACCGGAGGGTGTATTG+GGG + chr1_1:29982316-29982335 Msa0017940:intron 55.0%
CGTTTCCCCAATACACCCTC+CGG - chr1_1:29982324-29982343 None:intergenic 55.0%
GCATCCTACTGTTGTCCAGG+TGG + chr1_1:29982806-29982825 Msa0017940:intron 55.0%
CTGACCACCTGGACAACAGT+AGG - chr1_1:29982813-29982832 None:intergenic 55.0%
CCAAGCAACATCTGACCACC+TGG - chr1_1:29982824-29982843 None:intergenic 55.0%
CCAGGTGGTCAGATGTTGCT+TGG + chr1_1:29982821-29982840 Msa0017940:intron 55.0%
TTACCAACAGGTGCAGCCTC+AGG - chr1_1:29982912-29982931 None:intergenic 55.0%
! ACCGGTTTCCGACCAACCAA+AGG + chr1_1:29983890-29983909 Msa0017940:intron 55.0%
GGTTTCCGACCAACCAAAGG+TGG + chr1_1:29983893-29983912 Msa0017940:intron 55.0%
GTCGTCCACCTTTGGTTGGT+CGG - chr1_1:29983901-29983920 None:intergenic 55.0%
!! CCGGATTAGTCGTCCACCTT+TGG - chr1_1:29983909-29983928 None:intergenic 55.0%
! CTAATCCGGCTCGTACGTAG+AGG + chr1_1:29983920-29983939 Msa0017940:intron 55.0%
! GTACGTAGAGGCATGCGTAC+TGG + chr1_1:29983932-29983951 Msa0017940:intron 55.0%
TACCGGGTTCGATTCCTAGG+GGG - chr1_1:29983970-29983989 None:intergenic 55.0%
GAATCGAACCCGGTATTCCC+CGG + chr1_1:29983975-29983994 Msa0017940:intron 55.0%
AATCGAACCCGGTATTCCCC+GGG + chr1_1:29983976-29983995 Msa0017940:intron 55.0%
TTCTTCCAAGGACGTACCCG+GGG - chr1_1:29983995-29984014 None:intergenic 55.0%
CTTCTTCCAAGGACGTACCC+GGG - chr1_1:29983996-29984015 None:intergenic 55.0%
TTGCTTGGGATCCAGTGGCA+AGG - chr1_1:29984021-29984040 None:intergenic 55.0%
GGAGGAAGAGAGGTTGCATG+AGG - chr1_1:29977014-29977033 None:intergenic 55.0%
ACTCTTCCTGGAGAGAGCGA+CGG - chr1_1:29985598-29985617 None:intergenic 55.0%
TCGCTCTCTCCAGGAAGAGT+CGG + chr1_1:29985598-29985617 Msa0017940:CDS 55.0%
! TGGCCATGGCGGAGACTTTA+AGG - chr1_1:29985626-29985645 None:intergenic 55.0%
TAAAGTCTCCGCCATGGCCA+AGG + chr1_1:29985626-29985645 Msa0017940:CDS 55.0%
ATGCAACTCCTTGGCCATGG+CGG - chr1_1:29985637-29985656 None:intergenic 55.0%
TTTGTGGTACCAGAAGCCCG+TGG - chr1_1:29986740-29986759 None:intergenic 55.0%
GATGTGGCAGCAGTTAGTGC+AGG + chr1_1:29979338-29979357 Msa0017940:intron 55.0%
!! GCTGAGGCGTTGAGTAAGGT+TGG + chr1_1:29979389-29979408 Msa0017940:intron 55.0%
!! GGGTGTCGTTACACTTGAGG+AGG + chr1_1:29987984-29988003 Msa0017940:CDS 55.0%
CCTCTTCAACAGCGGCCTAA+AGG - chr1_1:29989365-29989384 None:intergenic 55.0%
CCTTTAGGCCGCTGTTGAAG+AGG + chr1_1:29989362-29989381 Msa0017940:intron 55.0%
TGCACCTGTTGGCAACCCTA+TGG + chr1_1:29990601-29990620 Msa0017940:CDS 55.0%
! GCTGGTGGTTTTTCTGCGGG+CGG - chr1_1:29977065-29977084 None:intergenic 60.0%
! GGGTGTCGTGACACTTGAGG+AGG + chr1_1:29979418-29979437 Msa0017940:intron 60.0%
AGAGGCGGGGAAAGAGAGAG+GGG - chr1_1:29980191-29980210 None:intergenic 60.0%
GAGAGGCGGGGAAAGAGAGA+GGG - chr1_1:29980192-29980211 None:intergenic 60.0%
GGTCCCAAGCCAACACCATC+AGG - chr1_1:29980312-29980331 None:intergenic 60.0%
GTGCTCCTCCTCAAGGTCTC+AGG + chr1_1:29980339-29980358 Msa0017940:intron 60.0%
! TCCGCGGTGCCAATTTGGGT+GGG + chr1_1:29980370-29980389 Msa0017940:intron 60.0%
CTTTCAGGCCGCTGTTGAGG+AGG + chr1_1:29980820-29980839 Msa0017940:intron 60.0%
GAACCTGAGGCTGCACCTGT+TGG + chr1_1:29982906-29982925 Msa0017940:intron 60.0%
GCATGCCTCTACGTACGAGC+CGG - chr1_1:29983928-29983947 None:intergenic 60.0%
TTCCTAGGGGGGACAACGCT+TGG - chr1_1:29983958-29983977 None:intergenic 60.0%
TCCCCCCTAGGAATCGAACC+CGG + chr1_1:29983965-29983984 Msa0017940:intron 60.0%
ACCGGGTTCGATTCCTAGGG+GGG - chr1_1:29983969-29983988 None:intergenic 60.0%
AGGACGTACCCGGGGAATAC+CGG - chr1_1:29983987-29984006 None:intergenic 60.0%
GTATTCCCCGGGTACGTCCT+TGG + chr1_1:29983987-29984006 Msa0017940:intron 60.0%
GCAACGACGCATGTCGGACA+TGG - chr1_1:29986909-29986928 None:intergenic 60.0%
GTCCGACATGCGTCGTTGCA+CGG + chr1_1:29986910-29986929 Msa0017940:intron 60.0%
TGCCGTGCAACGACGCATGT+CGG - chr1_1:29986915-29986934 None:intergenic 60.0%
GAACCTGAGGCTGCACCTGT+TGG + chr1_1:29982906-29982925 Msa0017940:intron 60.0%
TTGCCAACAGGTGCAGCCTC+AGG - chr1_1:29990596-29990615 None:intergenic 60.0%
GGTGAGAGCGACGTTGCTGG+TGG - chr1_1:29977080-29977099 None:intergenic 65.0%
CCTGGTGAGAGCGACGTTGC+TGG - chr1_1:29977083-29977102 None:intergenic 65.0%
CCAGCAACGTCGCTCTCACC+AGG + chr1_1:29977080-29977099 Msa0017940:intron 65.0%
!! GGTTCTAGGCACTGCGGCCA+AGG + chr1_1:29980065-29980084 Msa0017940:intron 65.0%
! TCTAGGCACTGCGGCCAAGG+TGG + chr1_1:29980068-29980087 Msa0017940:intron 65.0%
GAGGCGGGGAAAGAGAGAGG+GGG - chr1_1:29980190-29980209 None:intergenic 65.0%
GGAGAGGCGGGGAAAGAGAG+AGG - chr1_1:29980193-29980212 None:intergenic 65.0%
! CTCCGCGGTGCCAATTTGGG+TGG + chr1_1:29980369-29980388 Msa0017940:intron 65.0%
GCCCACCCAAATTGGCACCG+CGG - chr1_1:29980374-29980393 None:intergenic 65.0%
GGACGTACCCGGGGAATACC+GGG - chr1_1:29983986-29984005 None:intergenic 65.0%
CCTGGAGAGAGCGACGGTAC+TGG - chr1_1:29985592-29985611 None:intergenic 65.0%
CCAGTACCGTCGCTCTCTCC+AGG + chr1_1:29985589-29985608 Msa0017940:CDS 65.0%
!! GGTTCTAGGCACTGCGGCCA+AGG + chr1_1:29980065-29980084 Msa0017940:intron 65.0%
! TCTAGGCACTGCGGCCAAGG+TGG + chr1_1:29980068-29980087 Msa0017940:intron 65.0%
! GGCCAAGCGTTGTCCCCCCT+AGG + chr1_1:29983953-29983972 Msa0017940:intron 70.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 29976858 29991402 29976858 ID=Msa0017940;Name=Msa0017940
chr1_1 mRNA 29976858 29991402 29976858 ID=Msa0017940-mRNA-1;Parent=Msa0017940;Name=Msa0017940-mRNA-1;_AED=0.29;_eAED=0.29;_QI=134|1|1|1|0.78|0.8|15|392|592
chr1_1 exon 29976858 29976970 29976858 ID=Msa0017940-mRNA-1:exon:10006;Parent=Msa0017940-mRNA-1
chr1_1 exon 29985480 29985692 29985480 ID=Msa0017940-mRNA-1:exon:10007;Parent=Msa0017940-mRNA-1
chr1_1 exon 29985781 29985906 29985781 ID=Msa0017940-mRNA-1:exon:10008;Parent=Msa0017940-mRNA-1
chr1_1 exon 29986345 29986482 29986345 ID=Msa0017940-mRNA-1:exon:10009;Parent=Msa0017940-mRNA-1
chr1_1 exon 29986590 29986685 29986590 ID=Msa0017940-mRNA-1:exon:10010;Parent=Msa0017940-mRNA-1
chr1_1 exon 29987883 29988125 29987883 ID=Msa0017940-mRNA-1:exon:10011;Parent=Msa0017940-mRNA-1
chr1_1 exon 29988215 29988449 29988215 ID=Msa0017940-mRNA-1:exon:10012;Parent=Msa0017940-mRNA-1
chr1_1 exon 29988577 29988746 29988577 ID=Msa0017940-mRNA-1:exon:10013;Parent=Msa0017940-mRNA-1
chr1_1 exon 29989029 29989106 29989029 ID=Msa0017940-mRNA-1:exon:10014;Parent=Msa0017940-mRNA-1
chr1_1 exon 29989219 29989290 29989219 ID=Msa0017940-mRNA-1:exon:10015;Parent=Msa0017940-mRNA-1
chr1_1 exon 29989369 29989473 29989369 ID=Msa0017940-mRNA-1:exon:10016;Parent=Msa0017940-mRNA-1
chr1_1 exon 29989651 29989743 29989651 ID=Msa0017940-mRNA-1:exon:10017;Parent=Msa0017940-mRNA-1
chr1_1 exon 29989818 29989910 29989818 ID=Msa0017940-mRNA-1:exon:10018;Parent=Msa0017940-mRNA-1
chr1_1 exon 29990509 29990632 29990509 ID=Msa0017940-mRNA-1:exon:10019;Parent=Msa0017940-mRNA-1
chr1_1 exon 29990997 29991402 29990997 ID=Msa0017940-mRNA-1:exon:10020;Parent=Msa0017940-mRNA-1
chr1_1 five_prime_UTR 29976858 29976970 29976858 ID=Msa0017940-mRNA-1:five_prime_utr;Parent=Msa0017940-mRNA-1
chr1_1 five_prime_UTR 29985480 29985500 29985480 ID=Msa0017940-mRNA-1:five_prime_utr;Parent=Msa0017940-mRNA-1
chr1_1 CDS 29985501 29985692 29985501 ID=Msa0017940-mRNA-1:cds;Parent=Msa0017940-mRNA-1
chr1_1 CDS 29985781 29985906 29985781 ID=Msa0017940-mRNA-1:cds;Parent=Msa0017940-mRNA-1
chr1_1 CDS 29986345 29986482 29986345 ID=Msa0017940-mRNA-1:cds;Parent=Msa0017940-mRNA-1
chr1_1 CDS 29986590 29986685 29986590 ID=Msa0017940-mRNA-1:cds;Parent=Msa0017940-mRNA-1
chr1_1 CDS 29987883 29988125 29987883 ID=Msa0017940-mRNA-1:cds;Parent=Msa0017940-mRNA-1
chr1_1 CDS 29988215 29988449 29988215 ID=Msa0017940-mRNA-1:cds;Parent=Msa0017940-mRNA-1
chr1_1 CDS 29988577 29988746 29988577 ID=Msa0017940-mRNA-1:cds;Parent=Msa0017940-mRNA-1
chr1_1 CDS 29989029 29989106 29989029 ID=Msa0017940-mRNA-1:cds;Parent=Msa0017940-mRNA-1
chr1_1 CDS 29989219 29989290 29989219 ID=Msa0017940-mRNA-1:cds;Parent=Msa0017940-mRNA-1
chr1_1 CDS 29989369 29989473 29989369 ID=Msa0017940-mRNA-1:cds;Parent=Msa0017940-mRNA-1
chr1_1 CDS 29989651 29989743 29989651 ID=Msa0017940-mRNA-1:cds;Parent=Msa0017940-mRNA-1
chr1_1 CDS 29989818 29989910 29989818 ID=Msa0017940-mRNA-1:cds;Parent=Msa0017940-mRNA-1
chr1_1 CDS 29990509 29990632 29990509 ID=Msa0017940-mRNA-1:cds;Parent=Msa0017940-mRNA-1
chr1_1 CDS 29990997 29991010 29990997 ID=Msa0017940-mRNA-1:cds;Parent=Msa0017940-mRNA-1
chr1_1 three_prime_UTR 29991011 29991402 29991011 ID=Msa0017940-mRNA-1:three_prime_utr;Parent=Msa0017940-mRNA-1
Gene Sequence

>Msa0017940

ATGGCATCATTAAATCTATCCTCATGCAACCTCTCTTCCTCCGCTTCCATTTCTTCATTCCCATCTTCTTCCACCCGCAGAAAAACTACCAGTACCGTCGCTCTCTCCAGGAAGAGTCGGAACCTTAAAGTCTCCGCCATGGCCAAGGAGTTGCATTTCAACAAAGATGGTTCCGCTATCAAGAAACTCCAGAATGGTGTGAACAAGCTTGCAGATTTGGTTGGTGTTACTCTTGGTCCTAAGGGAAGGAATGTTGTTCTTGAGAGCAAGTATGGTTCTCCTAAGATTGTTAATGATGGTGTCACTGTTGCCAAAGAGGTGGAGTTGGAGGATCCGGTTGAGAATATTGGTGCTAAATTGGTTAGACAGGCGGCCGCCAAGACAAATGATTTGGCAGGCGATGGAACTACTACCTCTGTTGTTTTGGCTCAAGGTCTTATTGCAGAAGGTGTTAAGGTTGTTGCAGCAGGTGCAAACCCTGTGCTTATCACACGTGGTATTGAGAAGACAGCGAAAGCTCTTGTCGCTGAACTTAAACTAATGTCAAAAGAGGTTGAGGATAGTGAATTGGCTGATGTGGCAGCAGTTAGTGCAGGGAACAATCATGAGGTAGGAAATATGATAGCTGAGGCGTTGAGTAAGGTTGGTAGAAAGGGTGTCGTTACACTTGAGGAGGGAAGGAGTGCTGAAAACAATCTGTATGTTGTTGAGGGCATGCAATTTGATCGAGGATATATTTCACCCTACTTTGTTACAGACAGTGAGAAAATGACCGTTGAATTTGAGAACTGCAAGTTGCTTTTAGTTGACAAAAAGATATCCAATGCAAGGGATCTTATTAACATACTAGAGGACGCAATTAGAAACGGATTCCCTATTTTGATAATTGCAGAGGATATTGAACAAGAAGCTTTGGCAACTCTTGTTGTGAACAAACTTAGAGGATCACTGAAGATTGCAGCACTTAAGGCTCCTGGATTTGGAGAACGCAAGAGCCAGTACCTTGATGATATTGCCATCTTGACAGGAGGTACTGTTATCAGAGAGGAGGTTGGCCTTAGCTTAGACAAAGCTGGGAATGAGGTTCTAGGCACTGCGGCCAAGGTGGTGCTCACCAAAGATACAACCACAATAGTTGGTGATGGAAGTACCCAAGAAGCAGTTACAAAGCGAGTTTCACAAATTAAGAACCAAATAGAGGCTGCAGAACAAGATTATGAAAAGGAGAAGTTGAACGAAAGGATTGCAAAACTGTCTGGTGGTGTGGCTGTAATTCAGGTTGGTGCACAAACTGAGACAGAACTCAAGGAAAAGAAATTGAGAGTTGAAGACGCTCTTAACGCTACAAAGGCCGCTGTTGAAGAGGGTATTGTAGTTGGTGGTGGGTGCACTTTGCTCAGACTTGCATCAAAGGTGGATGCAATCAAAGCTACCCTTGCAAATGATGAAGAAAAAGTTGGAGCAGACATTGTTAAAAGAGCCCTTAGCTACCCTCTGAAATTAATAGCAAAAAATGCTGGTGTAAATGGCAGTGTTGTTAGTGAGAAGGTTCTATCCAACGACGATACGAGATATGGATATAATGCTGCCACTGGCAAATATGAAGATTTGATGTCTGCTGGGATCATTGATCCTACAAAGGTGGTTAGATGTTGCTTGGAACATGCAGCGTCTGTTGCGAAAACATTCTTAATGTCAGACTGTGTTGTTGTTGAGATAAAGGAACCTGAGGCTGCACCTGTTGGCAACCCTATGGACAATTCAGGATTCGGTATGTAG
Protein sequence

>Msa0017940

MASLNLSSCNLSSSASISSFPSSSTRRKTTSTVALSRKSRNLKVSAMAKELHFNKDGSAIKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGSPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTAKALVAELKLMSKEVEDSELADVAAVSAGNNHEVGNMIAEALSKVGRKGVVTLEEGRSAENNLYVVEGMQFDRGYISPYFVTDSEKMTVEFENCKLLLVDKKISNARDLINILEDAIRNGFPILIIAEDIEQEALATLVVNKLRGSLKIAALKAPGFGERKSQYLDDIAILTGGTVIREEVGLSLDKAGNEVLGTAAKVVLTKDTTTIVGDGSTQEAVTKRVSQIKNQIEAAEQDYEKEKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCTLLRLASKVDAIKATLANDEEKVGADIVKRALSYPLKLIAKNAGVNGSVVSEKVLSNDDTRYGYNAATGKYEDLMSAGIIDPTKVVRCCLEHAASVAKTFLMSDCVVVEIKEPEAAPVGNPMDNSGFGM*