AlfalfaGEDB | Msa0344870

M. sativa cultivar zhongmu-4 / Msa0344870

KEGG: -
GO: GO:0003674 GO:0003824 GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0008150 GO:0016020 GO:0016787 GO:0016822 GO:0016823 GO:0030312 GO:0034820 GO:0040007 GO:0044110 GO:0044116 GO:0044117 GO:0044403 GO:0044419 GO:0044464 GO:0051704 GO:0071944
PFAM: PF12697.10

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0344870	XP_003603229.1	97.697	304	5	1	1	302	1	304	0.0	608

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0344870	sp\|Q7MPY0\|BIOH_VIBVY	28.519	270	165	10	36	297	3	252	1.58e-14	75.1

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0344870	G7J939	97.697	304	5	1	1	302	1	304	0.0	608

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000490	Msa0344870	-0.831011	2.125464e-55	-8.615850e-47
Msa0007080	Msa0344870	0.808285	3.339421e-50	-8.615850e-47
Msa0014710	Msa0344870	0.831024	2.109900e-55	-8.615850e-47
Msa0032610	Msa0344870	0.811461	6.922001e-51	-8.615850e-47
Msa0039330	Msa0344870	0.844405	7.713988e-59	-8.615850e-47
Msa0043730	Msa0344870	0.833603	4.850392e-56	-8.615850e-47
Msa0048000	Msa0344870	0.805170	1.519412e-49	-8.615850e-47
Msa0050730	Msa0344870	0.808371	3.200901e-50	-8.615850e-47
Msa0050760	Msa0344870	0.810556	1.086780e-50	-8.615850e-47
Msa0069260	Msa0344870	0.800331	1.515553e-48	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0344870	MtrunA17_Chr3g0136411	97.697	304	5	1	1	302	1	304	0.0	608
Msa0344870	MtrunA17_Chr3g0123881	39.322	295	176	3	5	298	6	298	4.43e-75	233
Msa0344870	MtrunA17_Chr5g0426241	38.754	289	172	4	13	298	12	298	3.84e-69	217
Msa0344870	MtrunA17_Chr2g0279171	39.661	295	174	4	6	298	9	301	9.40e-69	216
Msa0344870	MtrunA17_Chr5g0404141	38.194	288	162	5	23	298	19	302	2.18e-62	200
Msa0344870	MtrunA17_Chr8g0373201	37.801	291	162	5	23	298	19	305	4.09e-62	199
Msa0344870	MtrunA17_Chr5g0404211	38.043	276	161	5	30	299	26	297	4.45e-60	194
Msa0344870	MtrunA17_Chr5g0404161	36.683	199	112	4	23	209	29	225	5.05e-34	124
Msa0344870	MtrunA17_Chr8g0382001	40.541	148	80	1	6	153	5	144	8.56e-32	115
Msa0344870	MtrunA17_Chr8g0381981	29.054	148	87	3	168	298	10	156	9.31e-16	73.9

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0344870	AT5G21950.1	51.307	306	144	2	1	302	1	305	1.59e-116	338
Msa0344870	AT5G21950.6	51.307	306	144	2	1	302	53	357	1.23e-115	338
Msa0344870	AT4G33180.1	51.316	304	141	4	2	299	3	305	1.41e-110	323
Msa0344870	AT5G21950.7	52.239	268	123	2	1	264	1	267	2.89e-102	300
Msa0344870	AT5G21950.3	50.704	213	100	2	1	209	1	212	6.01e-73	224
Msa0344870	AT5G21950.2	50.704	213	100	2	1	209	1	212	6.01e-73	224
Msa0344870	AT5G21950.5	50.704	213	100	2	1	209	53	264	4.11e-72	224
Msa0344870	AT5G21950.4	50.704	213	100	2	1	209	53	264	4.11e-72	224
Msa0344870	AT4G33180.2	51.500	200	91	3	2	196	3	201	1.15e-69	216
Msa0344870	AT5G09430.1	36.120	299	183	4	6	298	11	307	2.06e-65	208

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Find 74 sgRNAs with CRISPR-Local

Find 199 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACATTTCACCTCTTCAAC+AGG	0.392798	3_1:-3801923	Msa0344870:intron
AAAGTAGTTATTGCAAGTTC+TGG	0.338855	3_1:-3802343	Msa0344870:CDS
AAATGGATTGTCTATAGGAC+AGG	0.491723	3_1:-3801956	Msa0344870:CDS
AAATTTCAAGCGGAATCGGT+TGG	0.521716	3_1:-3802475	Msa0344870:CDS
AAGAACAGAGAAATTTCAAG+CGG	0.633582	3_1:-3802485	Msa0344870:CDS
AAGATTGGAATTGATAAAGG+AGG	0.650039	3_1:-3800404	Msa0344870:CDS
AATTATTGGATCATGACGAT+TGG	0.484999	3_1:+3802821	None:intergenic
AATTCATGGGCCATCTGCAC+GGG	0.491317	3_1:+3801782	None:intergenic
AGAGAAATTTCAAGCGGAAT+CGG	0.437076	3_1:-3802479	Msa0344870:CDS
AGAGATTATACTCAGATAAT+AGG	0.333887	3_1:-3801999	Msa0344870:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATTATTGGATCATGACGATT+GGG	+	chr3_1:3800329-3800348	None:intergenic	30.0%
AATTATTGGATCATGACGAT+TGG	+	chr3_1:3800330-3800349	None:intergenic	30.0%
TTCTCCAAAGAAGATTAGAT+CGG	+	chr3_1:3800623-3800642	None:intergenic	30.0%
AAGAACAGAGAAATTTCAAG+CGG	-	chr3_1:3800663-3800682	Msa0344870:intron	30.0%
TGGAATAGTTGCGTATAATT+TGG	-	chr3_1:3800753-3800772	Msa0344870:intron	30.0%
TATAATTTGGCGAAGATGTT+GGG	-	chr3_1:3800766-3800785	Msa0344870:intron	30.0%
AAAGTAGTTATTGCAAGTTC+TGG	-	chr3_1:3800805-3800824	Msa0344870:intron	30.0%
TATGACAAAGAATCATAACG+TGG	-	chr3_1:3800834-3800853	Msa0344870:intron	30.0%
AAGTCCCTCAAGAAAAAATT+AGG	+	chr3_1:3800973-3800992	None:intergenic	30.0%
AATTACGTACCATGTATGTA+TGG	+	chr3_1:3801065-3801084	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_1	gene	3800215	3802955	3800215	ID=Msa0344870;Name=Msa0344870
chr3_1	mRNA	3800215	3802955	3800215	ID=Msa0344870-mRNA-1;Parent=Msa0344870;Name=Msa0344870-mRNA-1;_AED=0.02;_eAED=0.02;_QI=158\|1\|1\|1\|1\|1\|4\|112\|302
chr3_1	exon	3800215	3800444	3800215	ID=Msa0344870-mRNA-1:exon:1226;Parent=Msa0344870-mRNA-1
chr3_1	exon	3801776	3801843	3801776	ID=Msa0344870-mRNA-1:exon:1225;Parent=Msa0344870-mRNA-1
chr3_1	exon	3801924	3802019	3801924	ID=Msa0344870-mRNA-1:exon:1224;Parent=Msa0344870-mRNA-1
chr3_1	exon	3802171	3802955	3802171	ID=Msa0344870-mRNA-1:exon:1223;Parent=Msa0344870-mRNA-1
chr3_1	five_prime_UTR	3802798	3802955	3802798	ID=Msa0344870-mRNA-1:five_prime_utr;Parent=Msa0344870-mRNA-1
chr3_1	CDS	3802171	3802797	3802171	ID=Msa0344870-mRNA-1:cds;Parent=Msa0344870-mRNA-1
chr3_1	CDS	3801924	3802019	3801924	ID=Msa0344870-mRNA-1:cds;Parent=Msa0344870-mRNA-1
chr3_1	CDS	3801776	3801843	3801776	ID=Msa0344870-mRNA-1:cds;Parent=Msa0344870-mRNA-1
chr3_1	CDS	3800327	3800444	3800327	ID=Msa0344870-mRNA-1:cds;Parent=Msa0344870-mRNA-1
chr3_1	three_prime_UTR	3800215	3800326	3800215	ID=Msa0344870-mRNA-1:three_prime_utr;Parent=Msa0344870-mRNA-1

Gene Sequence

>Msa0344870

ATGATTCCATCGTTTCTTAGTTTCGCCGGCTTATACAACGGCTACCTCCGCCGTTGTTTCACCGGCGCCGGTCTCTTATCTCAAAAAATCGACATCGACAACGAAACATCTCTCCATTTTTGGGGTCCAACAAACAAATCCACACAAAAACCTTCTCTCGTCCTCATCCACGGTTTCGGTCCTATGGCGATGTGGCAATGGCGTCAACAAGTTCAATTCCTAGCTCCACACTTCAATCTCTACGTTCCCGATCTAATCTTCTTTGGAGAATCAACAACGAAATCAAAAGAAAGAACAGAGAAATTTCAAGCGGAATCGGTTGGAAAATTGTTGGAGAAGATAGGTGTGAAAAAGTGCCACGTGGTGGGAACGAGTTATGGTGGAATAGTTGCGTATAATTTGGCGAAGATGTTGGGAGAAGAGAAGATTGAGAAAGTAGTTATTGCAAGTTCTGGTGTGAATATGACAAAGAATCATAACGTGGCGTTGTTGAAAAGAGCTGGATTGGACAAAATTGAAGATCTTATGTTACCTTCTTCTCCTCAACAGTTGAAAAATTTGATGTCACTTGCTGTCGCTAAACAAATCCCTTTTGTGCCTAATTTTTTCTTGAGGGACTTCTTAAGGAGATTATACTCAGATAATAGGAAGGAAAAGATGGAGCTTCTAAATGGATTGTCTATAGGACAGGTTGATATTTCAAACATTTCACCTCTTCAACAGGAAGTTCTCGTATTGTGGGGGGAAGATGACAATATATTTCCCGTGCAGATGGCCCATGAATTGAAGGAGGTAATAAGTAAAAAGGCAAGATTGGAATTGATAAAGGAGGCATCTCATGTGCCACAAATTGAAAAGCCGGAGGAATTCAACAATATTATCCTAAATTTCTTACAACCGAAATCTTGA

Protein sequence

>Msa0344870

MIPSFLSFAGLYNGYLRRCFTGAGLLSQKIDIDNETSLHFWGPTNKSTQKPSLVLIHGFGPMAMWQWRQQVQFLAPHFNLYVPDLIFFGESTTKSKERTEKFQAESVGKLLEKIGVKKCHVVGTSYGGIVAYNLAKMLGEEKIEKVVIASSGVNMTKNHNVALLKRAGLDKIEDLMLPSSPQQLKNLMSLAVAKQIPFVPNFFLRDFLRRLYSDNRKEKMELLNGLSIGQVDISNISPLQQEVLVLWGEDDNIFPVQMAHELKEVISKKARLELIKEASHVPQIEKPEEFNNIILNFLQPKS*