AlfalfaGEDB | Msa1089840

M. sativa cultivar zhongmu-4 / Msa1089840

KEGG: K00213
GO: -
PFAM: PF08555.13

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1089840	XP_013454497.1	97.794	136	2	1	1	135	1	136	3.16e-90	268

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1089840	sp\|Q6GQN4\|FA32A_DANRE	33.083	133	62	2	1	133	1	106	1.12e-11	60.5

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1089840	A0A072UHD3	97.794	136	2	1	1	135	1	136	1.51e-90	268

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000490	Msa1089840	-0.819930	8.964720e-53	-8.615850e-47
Msa0004060	Msa1089840	0.800256	1.569264e-48	-8.615850e-47
Msa0004860	Msa1089840	0.820357	7.159922e-53	-8.615850e-47
Msa0004980	Msa1089840	0.808139	3.587535e-50	-8.615850e-47
Msa0006290	Msa1089840	0.810097	1.365479e-50	-8.615850e-47
Msa0006550	Msa1089840	0.814694	1.352486e-51	-8.615850e-47
Msa0006880	Msa1089840	0.866530	2.665781e-65	-8.615850e-47
Msa0008090	Msa1089840	0.827089	1.896387e-54	-8.615850e-47
Msa0008410	Msa1089840	0.861539	9.555719e-64	-8.615850e-47
Msa0010820	Msa1089840	0.816195	6.267731e-52	-8.615850e-47

Showing 1 to 10 of 573 entries

Previous1 2 3 4 5…58Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1089840	MtrunA17_Chr4g0000361	97.794	136	2	1	1	135	1	136	2.90e-94	268
Msa1089840	MtrunA17_Chr3g0138861	63.014	73	27	0	63	135	1	73	5.89e-31	105

Showing 1 to 2 of 2 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1089840	AT1G16810.3	59.722	144	49	3	1	135	1	144	3.33e-45	144
Msa1089840	AT1G16810.2	59.722	144	49	3	1	135	1	144	3.33e-45	144
Msa1089840	AT1G16810.1	59.722	144	49	3	1	135	1	144	3.33e-45	144

Showing 1 to 3 of 3 entries

Previous1Next

Find 43 sgRNAs with CRISPR-Local

Find 284 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGACGAACAGATAGATCT+TGG	0.494750	7_3:+3443825	None:intergenic
AAAGCATTGGATGTTGCTGG+CGG	0.694873	7_3:-3443378	Msa1089840:CDS
AACAAACAAATACAAATGAC+AGG	0.476276	7_3:+3442051	None:intergenic
AACAACTCCTTGAATCATCC+AGG	0.551401	7_3:+3442095	None:intergenic
AATCATCCAGGACCAACTTT+AGG	0.309675	7_3:+3442107	None:intergenic
AATGATCAAGAAGTAAATGA+TGG	0.482714	7_3:-3442320	Msa1089840:CDS
ACAAACAAATACAAATGACA+GGG	0.651390	7_3:+3442052	None:intergenic
ACAGCTATTGTGCAAGCATA+TGG	0.479185	7_3:+3442017	None:intergenic
ACTGAAGATGAAATCTCAGC+AGG	0.540124	7_3:-3443303	Msa1089840:intron
AGAGGCGGTACATAGAACAG+AGG	0.666218	7_3:-3442238	Msa1089840:CDS

Showing 1 to 10 of 43 entries

Previous1 2 3 4 5Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
GTCTTTCATTCAATTCACAA+AGG	-	chr7_3:3441892-3441911	Msa1089840:three_prime_UTR	30.0%
TCATTGTTTCACAGATATGT+CGG	-	chr7_3:3442258-3442277	Msa1089840:CDS	30.0%
TAGCCAAGTAAAACATCTTA+TGG	-	chr7_3:3442436-3442455	Msa1089840:intron	30.0%
AGTAAAACATCTTATGGTGT+TGG	-	chr7_3:3442442-3442461	Msa1089840:intron	30.0%
GTATGATGTAACAAGAATCA+AGG	+	chr7_3:3442493-3442512	None:intergenic	30.0%
GAAGGACTCAAAAAATGTAT+TGG	+	chr7_3:3443110-3443129	None:intergenic	30.0%
AAAGAAAAAGAAAAGGAAGG+AGG	+	chr7_3:3443214-3443233	None:intergenic	30.0%
CCACCTACATTAAATACAAA+TGG	+	chr7_3:3443335-3443354	None:intergenic	30.0%
CCATTTGTATTTAATGTAGG+TGG	-	chr7_3:3443332-3443351	Msa1089840:CDS	30.0%
CAAACAAATACAAATGACAG+GGG	+	chr7_3:3443650-3443669	None:intergenic	30.0%

Showing 1 to 10 of 284 entries

Previous1 2 3 4 5…29Next

Chromosome	Type	Strat	End	Strand	Name
chr7_3	gene	3441834	3443888	3441834	ID=Msa1089840;Name=Msa1089840
chr7_3	mRNA	3441834	3443888	3441834	ID=Msa1089840-mRNA-1;Parent=Msa1089840;Name=Msa1089840-mRNA-1;_AED=0.01;_eAED=0.01;_QI=82\|1\|1\|1\|0.5\|0.33\|3\|275\|135
chr7_3	exon	3441834	3442371	3441834	ID=Msa1089840-mRNA-1:exon:1351;Parent=Msa1089840-mRNA-1
chr7_3	exon	3443304	3443450	3443304	ID=Msa1089840-mRNA-1:exon:1350;Parent=Msa1089840-mRNA-1
chr7_3	exon	3443809	3443888	3443809	ID=Msa1089840-mRNA-1:exon:1349;Parent=Msa1089840-mRNA-1
chr7_3	five_prime_UTR	3443809	3443888	3443809	ID=Msa1089840-mRNA-1:five_prime_utr;Parent=Msa1089840-mRNA-1
chr7_3	five_prime_UTR	3443449	3443450	3443449	ID=Msa1089840-mRNA-1:five_prime_utr;Parent=Msa1089840-mRNA-1
chr7_3	CDS	3443304	3443448	3443304	ID=Msa1089840-mRNA-1:cds;Parent=Msa1089840-mRNA-1
chr7_3	CDS	3442109	3442371	3442109	ID=Msa1089840-mRNA-1:cds;Parent=Msa1089840-mRNA-1
chr7_3	three_prime_UTR	3441834	3442108	3441834	ID=Msa1089840-mRNA-1:three_prime_utr;Parent=Msa1089840-mRNA-1

Gene Sequence

>Msa1089840

ATGTCGGCATATGAGAATGTTGTTGGTGGTAAACTGAAGCTGAAGGGAAAAGCATTGGATGTTGCTGGCGGAATCAAGAAGAAGAAAAAGAACAAAAGAAATCAACAACAGTTTTTGCAAGCAACTGAAGATGAAATCTCAGCAGGTGGAAGTACAGAACAAGCTAAAGATCCTAATGATCAAGAAGTAAATGATGGGAGTGAATTGAGCAGGGAAGAGAAGCCTGCTCATTATGATGATCATCTTACACCAGCAGAGAGGCGGTACATAGAACAGAGGGAGCAACTTGATGTTCATAGATTGGCCAAGATTTCTAATAAATCTCACCGCGATAGAATCCAGGATTTCAACCAATATCTCGCAAACATGAGCGAGCATTATGATATTCCTAAAGTTGGTCCTGGATGA

Protein sequence

>Msa1089840

MSAYENVVGGKLKLKGKALDVAGGIKKKKKNKRNQQQFLQATEDEISAGGSTEQAKDPNDQEVNDGSELSREEKPAHYDDHLTPAERRYIEQREQLDVHRLAKISNKSHRDRIQDFNQYLANMSEHYDIPKVGPG*