AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1089840


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1089840 MtrunA17_Chr4g0000361 97.794 136 2 1 1 135 1 136 2.90e-94 268
Msa1089840 MtrunA17_Chr3g0138861 63.014 73 27 0 63 135 1 73 5.89e-31 105
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1089840 AT1G16810.3 59.722 144 49 3 1 135 1 144 3.33e-45 144
Msa1089840 AT1G16810.2 59.722 144 49 3 1 135 1 144 3.33e-45 144
Msa1089840 AT1G16810.1 59.722 144 49 3 1 135 1 144 3.33e-45 144

Find 43 sgRNAs with CRISPR-Local

Find 284 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTAGTAATAATGTTATCTT+TGG 0.227793 7_3:-3441831 None:intergenic
TCATTTACTTCTTGATCATT+AGG 0.263557 7_3:+3442323 None:intergenic
CGCTCATGTTTGCGAGATAT+TGG 0.302036 7_3:+3442144 None:intergenic
AATCATCCAGGACCAACTTT+AGG 0.309675 7_3:+3442107 None:intergenic
GTGAGATTTATTAGAAATCT+TGG 0.347606 7_3:+3442190 None:intergenic
TTTGAGTTAGATTCTGTTGA+TGG 0.354127 7_3:-3441939 Msa1089840:three_prime_UTR
CGAGATATTGGTTGAAATCC+TGG 0.357664 7_3:+3442156 None:intergenic
GCAACTTGATGTTCATAGAT+TGG 0.407231 7_3:-3442213 Msa1089840:CDS
GGAAAAGCATTGGATGTTGC+TGG 0.421175 7_3:-3443381 Msa1089840:CDS
ATGATGGGAGTGAATTGAGC+AGG 0.471811 7_3:-3442304 Msa1089840:CDS
CATTATGATATTCCTAAAGT+TGG 0.473152 7_3:-3442119 Msa1089840:CDS
AACAAACAAATACAAATGAC+AGG 0.476276 7_3:+3442051 None:intergenic
ACAGCTATTGTGCAAGCATA+TGG 0.479185 7_3:+3442017 None:intergenic
AATGATCAAGAAGTAAATGA+TGG 0.482714 7_3:-3442320 Msa1089840:CDS
GATATTCCTAAAGTTGGTCC+TGG 0.485583 7_3:-3442113 Msa1089840:CDS
TCTATGTACCGCCTCTCTGC+TGG 0.489804 7_3:+3442245 None:intergenic
AGTTGGTCCTGGATGATTCA+AGG 0.491632 7_3:-3442102 Msa1089840:exon
AAAGACGAACAGATAGATCT+TGG 0.494750 7_3:+3443825 None:intergenic
TTGAGTTAGATTCTGTTGAT+GGG 0.504146 7_3:-3441938 Msa1089840:three_prime_UTR
ATCTCACCGCGATAGAATCC+AGG 0.518832 7_3:-3442174 Msa1089840:CDS
GAAGCTGAAGGGAAAAGCAT+TGG 0.531649 7_3:-3443391 Msa1089840:CDS
ACTGAAGATGAAATCTCAGC+AGG 0.540124 7_3:-3443303 Msa1089840:intron
AGATGATCATCATAATGAGC+AGG 0.545898 7_3:+3442272 None:intergenic
AACAACTCCTTGAATCATCC+AGG 0.551401 7_3:+3442095 None:intergenic
TCGGCATATGAGAATGTTGT+TGG 0.556165 7_3:-3443423 Msa1089840:CDS
TGATGGGAGTGAATTGAGCA+GGG 0.558875 7_3:-3442303 Msa1089840:CDS
ATGATCAAGAAGTAAATGAT+GGG 0.571574 7_3:-3442319 Msa1089840:CDS
GAGTTGTTCAAGTATGAAGA+AGG 0.582106 7_3:-3442080 Msa1089840:three_prime_UTR
TCATTGTTTCACAGATATGT+CGG 0.582355 7_3:-3443442 Msa1089840:intron
TGAGTTAGATTCTGTTGATG+GGG 0.607672 7_3:-3441937 Msa1089840:three_prime_UTR
GTCTTTCATTCAATTCACAA+AGG 0.615169 7_3:-3443808 Msa1089840:intron
GAGGCGGTACATAGAACAGA+GGG 0.618835 7_3:-3442237 Msa1089840:CDS
ATCTTACACCAGCAGAGAGG+CGG 0.643614 7_3:-3442253 Msa1089840:CDS
GATCTTGGTGCGTAAAACGA+TGG 0.645078 7_3:+3443840 None:intergenic
GCATATGAGAATGTTGTTGG+TGG 0.647733 7_3:-3443420 Msa1089840:CDS
ACAAACAAATACAAATGACA+GGG 0.651390 7_3:+3442052 None:intergenic
TGAAATCCTGGATTCTATCG+CGG 0.661087 7_3:+3442168 None:intergenic
AGAGGCGGTACATAGAACAG+AGG 0.666218 7_3:-3442238 Msa1089840:CDS
TGGTGGTAAACTGAAGCTGA+AGG 0.678860 7_3:-3443403 Msa1089840:CDS
AAAGCATTGGATGTTGCTGG+CGG 0.694873 7_3:-3443378 Msa1089840:CDS
GGTGGTAAACTGAAGCTGAA+GGG 0.696896 7_3:-3443402 Msa1089840:CDS
ATCATCTTACACCAGCAGAG+AGG 0.709383 7_3:-3442256 Msa1089840:CDS
CAAACAAATACAAATGACAG+GGG 0.732012 7_3:+3442053 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATATAAAAATTTCATAGA+AGG + chr7_3:3443806-3443825 None:intergenic 10.0%
!! AAATATAAAAATTTCATAGA+AGG + chr7_3:3443806-3443825 None:intergenic 10.0%
!! TAATAATAAATTCACCAAAA+CGG + chr7_3:3442122-3442141 None:intergenic 15.0%
!!! CATAGTATTATGTTTTAAAA+TGG - chr7_3:3442516-3442535 Msa1089840:intron 15.0%
!! AAAAAAATTATGTTCAAGTA+AGG + chr7_3:3442768-3442787 None:intergenic 15.0%
!!! TTTTTTTACTGAAAATCATA+AGG - chr7_3:3442781-3442800 Msa1089840:intron 15.0%
!!! TTTTTTACTGAAAATCATAA+GGG - chr7_3:3442782-3442801 Msa1089840:intron 15.0%
!!! TCAACAATAAATATCATTTT+CGG - chr7_3:3442832-3442851 Msa1089840:intron 15.0%
!! TAAATATATTGCACAATTTA+TGG + chr7_3:3443299-3443318 None:intergenic 15.0%
!! TAATAATAAATTCACCAAAA+CGG + chr7_3:3442122-3442141 None:intergenic 15.0%
!!! CATAGTATTATGTTTTAAAA+TGG - chr7_3:3442516-3442535 Msa1089840:intron 15.0%
!! AAAAAAATTATGTTCAAGTA+AGG + chr7_3:3442768-3442787 None:intergenic 15.0%
!!! TTTTTTTACTGAAAATCATA+AGG - chr7_3:3442781-3442800 Msa1089840:intron 15.0%
!!! TTTTTTACTGAAAATCATAA+GGG - chr7_3:3442782-3442801 Msa1089840:intron 15.0%
!!! TCAACAATAAATATCATTTT+CGG - chr7_3:3442832-3442851 Msa1089840:intron 15.0%
!! TAAATATATTGCACAATTTA+TGG + chr7_3:3443299-3443318 None:intergenic 15.0%
!!! ACAATGAAAATTAGGTTTTA+GGG + chr7_3:3442013-3442032 None:intergenic 20.0%
!!! TAATTTTCATTGTCATGTTA+GGG - chr7_3:3442020-3442039 Msa1089840:three_prime_UTR 20.0%
!!! TTATGTTTTAAAATGGTCAA+TGG - chr7_3:3442523-3442542 Msa1089840:intron 20.0%
!!! TTCTCATCATAATTTTCTTT+GGG + chr7_3:3442632-3442651 None:intergenic 20.0%
!!! ATTCTCATCATAATTTTCTT+TGG + chr7_3:3442633-3442652 None:intergenic 20.0%
!! ATTATAGTAAATGAGTATCT+GGG - chr7_3:3442699-3442718 Msa1089840:intron 20.0%
!! GAGTATTATAACAATATGAA+TGG - chr7_3:3443066-3443085 Msa1089840:intron 20.0%
!!! GATTTTGAAAGAAAAAGAAA+AGG + chr7_3:3443221-3443240 None:intergenic 20.0%
!! AACTAAAACCAAAAAGATTA+AGG + chr7_3:3443274-3443293 None:intergenic 20.0%
!!! ACAATGAAAATTAGGTTTTA+GGG + chr7_3:3442013-3442032 None:intergenic 20.0%
!!! TAATTTTCATTGTCATGTTA+GGG - chr7_3:3442020-3442039 Msa1089840:three_prime_UTR 20.0%
!!! TTATGTTTTAAAATGGTCAA+TGG - chr7_3:3442523-3442542 Msa1089840:intron 20.0%
!!! TTCTCATCATAATTTTCTTT+GGG + chr7_3:3442632-3442651 None:intergenic 20.0%
!!! ATTCTCATCATAATTTTCTT+TGG + chr7_3:3442633-3442652 None:intergenic 20.0%
!! ATTATAGTAAATGAGTATCT+GGG - chr7_3:3442699-3442718 Msa1089840:intron 20.0%
!! GAGTATTATAACAATATGAA+TGG - chr7_3:3443066-3443085 Msa1089840:intron 20.0%
!!! GATTTTGAAAGAAAAAGAAA+AGG + chr7_3:3443221-3443240 None:intergenic 20.0%
!! AACTAAAACCAAAAAGATTA+AGG + chr7_3:3443274-3443293 None:intergenic 20.0%
!! GACAATGAAAATTAGGTTTT+AGG + chr7_3:3442014-3442033 None:intergenic 25.0%
! CTAACATGACAATGAAAATT+AGG + chr7_3:3442021-3442040 None:intergenic 25.0%
!! CTAATTTTCATTGTCATGTT+AGG - chr7_3:3442019-3442038 Msa1089840:three_prime_UTR 25.0%
!! ATAATTTTCTTTGGGTCAAA+AGG + chr7_3:3442624-3442643 None:intergenic 25.0%
! GATTATAGTAAATGAGTATC+TGG - chr7_3:3442698-3442717 Msa1089840:intron 25.0%
!! ATAAATATCATTTTCGGCAA+TGG - chr7_3:3442838-3442857 Msa1089840:intron 25.0%
!! TAAATATCATTTTCGGCAAT+GGG - chr7_3:3442839-3442858 Msa1089840:intron 25.0%
!!! TTTTTGGTTTACATTTCCTA+AGG - chr7_3:3442916-3442935 Msa1089840:intron 25.0%
! TAATACAAAATCCCCTAATT+TGG + chr7_3:3443132-3443151 None:intergenic 25.0%
! TTGAAAGAAAAAGAAAAGGA+AGG + chr7_3:3443217-3443236 None:intergenic 25.0%
! AAAAGATTAAGGATCTGTTT+CGG + chr7_3:3443263-3443282 None:intergenic 25.0%
!! AAACAGATCCTTAATCTTTT+TGG - chr7_3:3443263-3443282 Msa1089840:intron 25.0%
! TCATTTACTTCTTGATCATT+AGG + chr7_3:3443380-3443399 None:intergenic 25.0%
! AATGATCAAGAAGTAAATGA+TGG - chr7_3:3443380-3443399 Msa1089840:CDS 25.0%
! ATGATCAAGAAGTAAATGAT+GGG - chr7_3:3443381-3443400 Msa1089840:CDS 25.0%
! GTGAGATTTATTAGAAATCT+TGG + chr7_3:3443513-3443532 None:intergenic 25.0%
! CATTATGATATTCCTAAAGT+TGG - chr7_3:3443581-3443600 Msa1089840:intron 25.0%
! ACAAACAAATACAAATGACA+GGG + chr7_3:3443651-3443670 None:intergenic 25.0%
! AACAAACAAATACAAATGAC+AGG + chr7_3:3443652-3443671 None:intergenic 25.0%
!! GACAATGAAAATTAGGTTTT+AGG + chr7_3:3442014-3442033 None:intergenic 25.0%
! CTAACATGACAATGAAAATT+AGG + chr7_3:3442021-3442040 None:intergenic 25.0%
!! CTAATTTTCATTGTCATGTT+AGG - chr7_3:3442019-3442038 Msa1089840:three_prime_UTR 25.0%
!! ATAATTTTCTTTGGGTCAAA+AGG + chr7_3:3442624-3442643 None:intergenic 25.0%
! GATTATAGTAAATGAGTATC+TGG - chr7_3:3442698-3442717 Msa1089840:intron 25.0%
!! ATAAATATCATTTTCGGCAA+TGG - chr7_3:3442838-3442857 Msa1089840:intron 25.0%
!! TAAATATCATTTTCGGCAAT+GGG - chr7_3:3442839-3442858 Msa1089840:intron 25.0%
!!! TTTTTGGTTTACATTTCCTA+AGG - chr7_3:3442916-3442935 Msa1089840:intron 25.0%
! TAATACAAAATCCCCTAATT+TGG + chr7_3:3443132-3443151 None:intergenic 25.0%
! TTGAAAGAAAAAGAAAAGGA+AGG + chr7_3:3443217-3443236 None:intergenic 25.0%
! AAAAGATTAAGGATCTGTTT+CGG + chr7_3:3443263-3443282 None:intergenic 25.0%
!! AAACAGATCCTTAATCTTTT+TGG - chr7_3:3443263-3443282 Msa1089840:intron 25.0%
! TCATTTACTTCTTGATCATT+AGG + chr7_3:3443380-3443399 None:intergenic 25.0%
! AATGATCAAGAAGTAAATGA+TGG - chr7_3:3443380-3443399 Msa1089840:CDS 25.0%
! ATGATCAAGAAGTAAATGAT+GGG - chr7_3:3443381-3443400 Msa1089840:CDS 25.0%
! GTGAGATTTATTAGAAATCT+TGG + chr7_3:3443513-3443532 None:intergenic 25.0%
! CATTATGATATTCCTAAAGT+TGG - chr7_3:3443581-3443600 Msa1089840:intron 25.0%
! ACAAACAAATACAAATGACA+GGG + chr7_3:3443651-3443670 None:intergenic 25.0%
! AACAAACAAATACAAATGAC+AGG + chr7_3:3443652-3443671 None:intergenic 25.0%
GTCTTTCATTCAATTCACAA+AGG - chr7_3:3441892-3441911 Msa1089840:three_prime_UTR 30.0%
TCATTGTTTCACAGATATGT+CGG - chr7_3:3442258-3442277 Msa1089840:CDS 30.0%
! ATAAGATGTTTTACTTGGCT+AGG + chr7_3:3442437-3442456 None:intergenic 30.0%
TAGCCAAGTAAAACATCTTA+TGG - chr7_3:3442436-3442455 Msa1089840:intron 30.0%
! ACACCATAAGATGTTTTACT+TGG + chr7_3:3442442-3442461 None:intergenic 30.0%
AGTAAAACATCTTATGGTGT+TGG - chr7_3:3442442-3442461 Msa1089840:intron 30.0%
GTATGATGTAACAAGAATCA+AGG + chr7_3:3442493-3442512 None:intergenic 30.0%
! TGTATGAATTTTGCAAGAAC+AGG - chr7_3:3442654-3442673 Msa1089840:intron 30.0%
! TTTGTAGTCACTGTTCTTTT+TGG - chr7_3:3442900-3442919 Msa1089840:intron 30.0%
GAAGGACTCAAAAAATGTAT+TGG + chr7_3:3443110-3443129 None:intergenic 30.0%
!!! TTTTTGAGTCCTTCCAAATT+AGG - chr7_3:3443116-3443135 Msa1089840:intron 30.0%
!! TTTTGAGTCCTTCCAAATTA+GGG - chr7_3:3443117-3443136 Msa1089840:intron 30.0%
AAAGAAAAAGAAAAGGAAGG+AGG + chr7_3:3443214-3443233 None:intergenic 30.0%
!! GTGCCATTTGTATTTAATGT+AGG - chr7_3:3443329-3443348 Msa1089840:CDS 30.0%
CCACCTACATTAAATACAAA+TGG + chr7_3:3443335-3443354 None:intergenic 30.0%
CCATTTGTATTTAATGTAGG+TGG - chr7_3:3443332-3443351 Msa1089840:CDS 30.0%
CAAACAAATACAAATGACAG+GGG + chr7_3:3443650-3443669 None:intergenic 30.0%
! TTTGAGTTAGATTCTGTTGA+TGG - chr7_3:3443761-3443780 Msa1089840:intron 30.0%
TTGAGTTAGATTCTGTTGAT+GGG - chr7_3:3443762-3443781 Msa1089840:intron 30.0%
GTCTTTCATTCAATTCACAA+AGG - chr7_3:3441892-3441911 Msa1089840:three_prime_UTR 30.0%
TCATTGTTTCACAGATATGT+CGG - chr7_3:3442258-3442277 Msa1089840:CDS 30.0%
! ATAAGATGTTTTACTTGGCT+AGG + chr7_3:3442437-3442456 None:intergenic 30.0%
TAGCCAAGTAAAACATCTTA+TGG - chr7_3:3442436-3442455 Msa1089840:intron 30.0%
! ACACCATAAGATGTTTTACT+TGG + chr7_3:3442442-3442461 None:intergenic 30.0%
AGTAAAACATCTTATGGTGT+TGG - chr7_3:3442442-3442461 Msa1089840:intron 30.0%
GTATGATGTAACAAGAATCA+AGG + chr7_3:3442493-3442512 None:intergenic 30.0%
! TGTATGAATTTTGCAAGAAC+AGG - chr7_3:3442654-3442673 Msa1089840:intron 30.0%
! TTTGTAGTCACTGTTCTTTT+TGG - chr7_3:3442900-3442919 Msa1089840:intron 30.0%
GAAGGACTCAAAAAATGTAT+TGG + chr7_3:3443110-3443129 None:intergenic 30.0%
!!! TTTTTGAGTCCTTCCAAATT+AGG - chr7_3:3443116-3443135 Msa1089840:intron 30.0%
!! TTTTGAGTCCTTCCAAATTA+GGG - chr7_3:3443117-3443136 Msa1089840:intron 30.0%
AAAGAAAAAGAAAAGGAAGG+AGG + chr7_3:3443214-3443233 None:intergenic 30.0%
!! GTGCCATTTGTATTTAATGT+AGG - chr7_3:3443329-3443348 Msa1089840:CDS 30.0%
CCACCTACATTAAATACAAA+TGG + chr7_3:3443335-3443354 None:intergenic 30.0%
CCATTTGTATTTAATGTAGG+TGG - chr7_3:3443332-3443351 Msa1089840:CDS 30.0%
CAAACAAATACAAATGACAG+GGG + chr7_3:3443650-3443669 None:intergenic 30.0%
! TTTGAGTTAGATTCTGTTGA+TGG - chr7_3:3443761-3443780 Msa1089840:intron 30.0%
TTGAGTTAGATTCTGTTGAT+GGG - chr7_3:3443762-3443781 Msa1089840:intron 30.0%
AAAGACGAACAGATAGATCT+TGG + chr7_3:3441878-3441897 None:intergenic 35.0%
CCTAAAGACATGAATGTTTG+GGG + chr7_3:3442066-3442085 None:intergenic 35.0%
CCCTAAAGACATGAATGTTT+GGG + chr7_3:3442067-3442086 None:intergenic 35.0%
CCCAAACATTCATGTCTTTA+GGG - chr7_3:3442064-3442083 Msa1089840:three_prime_UTR 35.0%
ACCCTAAAGACATGAATGTT+TGG + chr7_3:3442068-3442087 None:intergenic 35.0%
TCAAATCACCTAGATTGCAA+TGG + chr7_3:3442680-3442699 None:intergenic 35.0%
AATCAACTAGGTTGCATAAC+AGG + chr7_3:3442881-3442900 None:intergenic 35.0%
CAGTGACTACAAAATCAACT+AGG + chr7_3:3442893-3442912 None:intergenic 35.0%
GGACTCAAAAAATGTATTGG+AGG + chr7_3:3443107-3443126 None:intergenic 35.0%
TTTGAGTCCTTCCAAATTAG+GGG - chr7_3:3443118-3443137 Msa1089840:intron 35.0%
ACAAAATCCCCTAATTTGGA+AGG + chr7_3:3443128-3443147 None:intergenic 35.0%
AGATGATCATCATAATGAGC+AGG + chr7_3:3443431-3443450 None:intergenic 35.0%
GCAACTTGATGTTCATAGAT+TGG - chr7_3:3443487-3443506 Msa1089840:intron 35.0%
GAGTTGTTCAAGTATGAAGA+AGG - chr7_3:3443620-3443639 Msa1089840:intron 35.0%
TGAGTTAGATTCTGTTGATG+GGG - chr7_3:3443763-3443782 Msa1089840:intron 35.0%
AAAGACGAACAGATAGATCT+TGG + chr7_3:3441878-3441897 None:intergenic 35.0%
CCTAAAGACATGAATGTTTG+GGG + chr7_3:3442066-3442085 None:intergenic 35.0%
CCCTAAAGACATGAATGTTT+GGG + chr7_3:3442067-3442086 None:intergenic 35.0%
CCCAAACATTCATGTCTTTA+GGG - chr7_3:3442064-3442083 Msa1089840:three_prime_UTR 35.0%
ACCCTAAAGACATGAATGTT+TGG + chr7_3:3442068-3442087 None:intergenic 35.0%
TCAAATCACCTAGATTGCAA+TGG + chr7_3:3442680-3442699 None:intergenic 35.0%
AATCAACTAGGTTGCATAAC+AGG + chr7_3:3442881-3442900 None:intergenic 35.0%
CAGTGACTACAAAATCAACT+AGG + chr7_3:3442893-3442912 None:intergenic 35.0%
GGACTCAAAAAATGTATTGG+AGG + chr7_3:3443107-3443126 None:intergenic 35.0%
TTTGAGTCCTTCCAAATTAG+GGG - chr7_3:3443118-3443137 Msa1089840:intron 35.0%
ACAAAATCCCCTAATTTGGA+AGG + chr7_3:3443128-3443147 None:intergenic 35.0%
AGATGATCATCATAATGAGC+AGG + chr7_3:3443431-3443450 None:intergenic 35.0%
GCAACTTGATGTTCATAGAT+TGG - chr7_3:3443487-3443506 Msa1089840:intron 35.0%
GAGTTGTTCAAGTATGAAGA+AGG - chr7_3:3443620-3443639 Msa1089840:intron 35.0%
TGAGTTAGATTCTGTTGATG+GGG - chr7_3:3443763-3443782 Msa1089840:intron 35.0%
CCCCAAACATTCATGTCTTT+AGG - chr7_3:3442063-3442082 Msa1089840:three_prime_UTR 40.0%
! AGCTTATCTACTCACCGTTT+TGG - chr7_3:3442105-3442124 Msa1089840:exon 40.0%
TCGGCATATGAGAATGTTGT+TGG - chr7_3:3442277-3442296 Msa1089840:CDS 40.0%
GCATATGAGAATGTTGTTGG+TGG - chr7_3:3442280-3442299 Msa1089840:CDS 40.0%
ACTGAAGATGAAATCTCAGC+AGG - chr7_3:3442397-3442416 Msa1089840:intron 40.0%
TTCTGTTTGATGTGCTGCAA+TGG - chr7_3:3442546-3442565 Msa1089840:intron 40.0%
CTGAAAATCATAAGGGACAG+TGG - chr7_3:3442789-3442808 Msa1089840:intron 40.0%
! GCAATGGGTTTCAGTAAACA+GGG - chr7_3:3442854-3442873 Msa1089840:intron 40.0%
AAAGAAAAGGAAGGAGGAAG+TGG + chr7_3:3443208-3443227 None:intergenic 40.0%
TAAGGATCTGTTTCGGAGTT+TGG + chr7_3:3443256-3443275 None:intergenic 40.0%
TGAAATCCTGGATTCTATCG+CGG + chr7_3:3443535-3443554 None:intergenic 40.0%
! CGAGATATTGGTTGAAATCC+TGG + chr7_3:3443547-3443566 None:intergenic 40.0%
! GATATTCCTAAAGTTGGTCC+TGG - chr7_3:3443587-3443606 Msa1089840:intron 40.0%
AATCATCCAGGACCAACTTT+AGG + chr7_3:3443596-3443615 None:intergenic 40.0%
AACAACTCCTTGAATCATCC+AGG + chr7_3:3443608-3443627 None:intergenic 40.0%
ACAGCTATTGTGCAAGCATA+TGG + chr7_3:3443686-3443705 None:intergenic 40.0%
CCCCAAACATTCATGTCTTT+AGG - chr7_3:3442063-3442082 Msa1089840:three_prime_UTR 40.0%
! AGCTTATCTACTCACCGTTT+TGG - chr7_3:3442105-3442124 Msa1089840:exon 40.0%
TCGGCATATGAGAATGTTGT+TGG - chr7_3:3442277-3442296 Msa1089840:CDS 40.0%
GCATATGAGAATGTTGTTGG+TGG - chr7_3:3442280-3442299 Msa1089840:CDS 40.0%
ACTGAAGATGAAATCTCAGC+AGG - chr7_3:3442397-3442416 Msa1089840:intron 40.0%
TTCTGTTTGATGTGCTGCAA+TGG - chr7_3:3442546-3442565 Msa1089840:intron 40.0%
CTGAAAATCATAAGGGACAG+TGG - chr7_3:3442789-3442808 Msa1089840:intron 40.0%
! GCAATGGGTTTCAGTAAACA+GGG - chr7_3:3442854-3442873 Msa1089840:intron 40.0%
AAAGAAAAGGAAGGAGGAAG+TGG + chr7_3:3443208-3443227 None:intergenic 40.0%
TAAGGATCTGTTTCGGAGTT+TGG + chr7_3:3443256-3443275 None:intergenic 40.0%
TGAAATCCTGGATTCTATCG+CGG + chr7_3:3443535-3443554 None:intergenic 40.0%
! CGAGATATTGGTTGAAATCC+TGG + chr7_3:3443547-3443566 None:intergenic 40.0%
! GATATTCCTAAAGTTGGTCC+TGG - chr7_3:3443587-3443606 Msa1089840:intron 40.0%
AATCATCCAGGACCAACTTT+AGG + chr7_3:3443596-3443615 None:intergenic 40.0%
AACAACTCCTTGAATCATCC+AGG + chr7_3:3443608-3443627 None:intergenic 40.0%
ACAGCTATTGTGCAAGCATA+TGG + chr7_3:3443686-3443705 None:intergenic 40.0%
! GATCTTGGTGCGTAAAACGA+TGG + chr7_3:3441863-3441882 None:intergenic 45.0%
TGGTGGTAAACTGAAGCTGA+AGG - chr7_3:3442297-3442316 Msa1089840:CDS 45.0%
GGTGGTAAACTGAAGCTGAA+GGG - chr7_3:3442298-3442317 Msa1089840:CDS 45.0%
! GAAGCTGAAGGGAAAAGCAT+TGG - chr7_3:3442309-3442328 Msa1089840:CDS 45.0%
!! GGAAAAGCATTGGATGTTGC+TGG - chr7_3:3442319-3442338 Msa1089840:CDS 45.0%
!! AAAGCATTGGATGTTGCTGG+CGG - chr7_3:3442322-3442341 Msa1089840:CDS 45.0%
AGAACAGGCCATTGCAATCT+AGG - chr7_3:3442669-3442688 Msa1089840:intron 45.0%
! GGCAATGGGTTTCAGTAAAC+AGG - chr7_3:3442853-3442872 Msa1089840:intron 45.0%
ACATTTCCTAAGGCTCCGTT+CGG - chr7_3:3442926-3442945 Msa1089840:intron 45.0%
AAAAGGAAGGAGGAAGTGGA+GGG + chr7_3:3443204-3443223 None:intergenic 45.0%
ATCTGTTTCGGAGTTTGGAG+GGG + chr7_3:3443251-3443270 None:intergenic 45.0%
GATCTGTTTCGGAGTTTGGA+GGG + chr7_3:3443252-3443271 None:intergenic 45.0%
! ATGATGGGAGTGAATTGAGC+AGG - chr7_3:3443396-3443415 Msa1089840:CDS 45.0%
TGATGGGAGTGAATTGAGCA+GGG - chr7_3:3443397-3443416 Msa1089840:CDS 45.0%
ATCATCTTACACCAGCAGAG+AGG - chr7_3:3443444-3443463 Msa1089840:intron 45.0%
CGCTCATGTTTGCGAGATAT+TGG + chr7_3:3443559-3443578 None:intergenic 45.0%
AGTTGGTCCTGGATGATTCA+AGG - chr7_3:3443598-3443617 Msa1089840:intron 45.0%
! GATCTTGGTGCGTAAAACGA+TGG + chr7_3:3441863-3441882 None:intergenic 45.0%
TGGTGGTAAACTGAAGCTGA+AGG - chr7_3:3442297-3442316 Msa1089840:CDS 45.0%
GGTGGTAAACTGAAGCTGAA+GGG - chr7_3:3442298-3442317 Msa1089840:CDS 45.0%
! GAAGCTGAAGGGAAAAGCAT+TGG - chr7_3:3442309-3442328 Msa1089840:CDS 45.0%
!! GGAAAAGCATTGGATGTTGC+TGG - chr7_3:3442319-3442338 Msa1089840:CDS 45.0%
!! AAAGCATTGGATGTTGCTGG+CGG - chr7_3:3442322-3442341 Msa1089840:CDS 45.0%
AGAACAGGCCATTGCAATCT+AGG - chr7_3:3442669-3442688 Msa1089840:intron 45.0%
! GGCAATGGGTTTCAGTAAAC+AGG - chr7_3:3442853-3442872 Msa1089840:intron 45.0%
ACATTTCCTAAGGCTCCGTT+CGG - chr7_3:3442926-3442945 Msa1089840:intron 45.0%
AAAAGGAAGGAGGAAGTGGA+GGG + chr7_3:3443204-3443223 None:intergenic 45.0%
ATCTGTTTCGGAGTTTGGAG+GGG + chr7_3:3443251-3443270 None:intergenic 45.0%
GATCTGTTTCGGAGTTTGGA+GGG + chr7_3:3443252-3443271 None:intergenic 45.0%
! ATGATGGGAGTGAATTGAGC+AGG - chr7_3:3443396-3443415 Msa1089840:CDS 45.0%
TGATGGGAGTGAATTGAGCA+GGG - chr7_3:3443397-3443416 Msa1089840:CDS 45.0%
ATCATCTTACACCAGCAGAG+AGG - chr7_3:3443444-3443463 Msa1089840:intron 45.0%
CGCTCATGTTTGCGAGATAT+TGG + chr7_3:3443559-3443578 None:intergenic 45.0%
AGTTGGTCCTGGATGATTCA+AGG - chr7_3:3443598-3443617 Msa1089840:intron 45.0%
CATTTCCTAAGGCTCCGTTC+GGG - chr7_3:3442927-3442946 Msa1089840:intron 50.0%
!! GAGGGAATGGATGGCTTTGT+GGG - chr7_3:3442961-3442980 Msa1089840:intron 50.0%
!! AGGGAATGGATGGCTTTGTG+GGG - chr7_3:3442962-3442981 Msa1089840:intron 50.0%
TGGAGGGAATAGAGGACTTC+GGG + chr7_3:3443188-3443207 None:intergenic 50.0%
GTGGAGGGAATAGAGGACTT+CGG + chr7_3:3443189-3443208 None:intergenic 50.0%
GAAAAGGAAGGAGGAAGTGG+AGG + chr7_3:3443205-3443224 None:intergenic 50.0%
TTTCGGAGTTTGGAGGGGAA+GGG + chr7_3:3443246-3443265 None:intergenic 50.0%
GGATCTGTTTCGGAGTTTGG+AGG + chr7_3:3443253-3443272 None:intergenic 50.0%
ATCTTACACCAGCAGAGAGG+CGG - chr7_3:3443447-3443466 Msa1089840:intron 50.0%
AGAGGCGGTACATAGAACAG+AGG - chr7_3:3443462-3443481 Msa1089840:intron 50.0%
GAGGCGGTACATAGAACAGA+GGG - chr7_3:3443463-3443482 Msa1089840:intron 50.0%
ATCTCACCGCGATAGAATCC+AGG - chr7_3:3443526-3443545 Msa1089840:intron 50.0%
CATTTCCTAAGGCTCCGTTC+GGG - chr7_3:3442927-3442946 Msa1089840:intron 50.0%
!! GAGGGAATGGATGGCTTTGT+GGG - chr7_3:3442961-3442980 Msa1089840:intron 50.0%
!! AGGGAATGGATGGCTTTGTG+GGG - chr7_3:3442962-3442981 Msa1089840:intron 50.0%
TGGAGGGAATAGAGGACTTC+GGG + chr7_3:3443188-3443207 None:intergenic 50.0%
GTGGAGGGAATAGAGGACTT+CGG + chr7_3:3443189-3443208 None:intergenic 50.0%
GAAAAGGAAGGAGGAAGTGG+AGG + chr7_3:3443205-3443224 None:intergenic 50.0%
TTTCGGAGTTTGGAGGGGAA+GGG + chr7_3:3443246-3443265 None:intergenic 50.0%
GGATCTGTTTCGGAGTTTGG+AGG + chr7_3:3443253-3443272 None:intergenic 50.0%
ATCTTACACCAGCAGAGAGG+CGG - chr7_3:3443447-3443466 Msa1089840:intron 50.0%
AGAGGCGGTACATAGAACAG+AGG - chr7_3:3443462-3443481 Msa1089840:intron 50.0%
GAGGCGGTACATAGAACAGA+GGG - chr7_3:3443463-3443482 Msa1089840:intron 50.0%
ATCTCACCGCGATAGAATCC+AGG - chr7_3:3443526-3443545 Msa1089840:intron 50.0%
AAACTCCCGAACGGAGCCTT+AGG + chr7_3:3442935-3442954 None:intergenic 55.0%
TAAGGCTCCGTTCGGGAGTT+TGG - chr7_3:3442934-3442953 Msa1089840:intron 55.0%
TTTGGAGGGGAGGGAATGGA+TGG - chr7_3:3442952-3442971 Msa1089840:intron 55.0%
! GGAGGGAATGGATGGCTTTG+TGG - chr7_3:3442960-3442979 Msa1089840:intron 55.0%
!! GGGAATGGATGGCTTTGTGG+GGG - chr7_3:3442963-3442982 Msa1089840:intron 55.0%
!! AATGGATGGCTTTGTGGGGG+AGG - chr7_3:3442966-3442985 Msa1089840:intron 55.0%
!! ATGGATGGCTTTGTGGGGGA+GGG - chr7_3:3442967-3442986 Msa1089840:intron 55.0%
GGAATAGAGGACTTCGGGAG+GGG + chr7_3:3443183-3443202 None:intergenic 55.0%
GGGAATAGAGGACTTCGGGA+GGG + chr7_3:3443184-3443203 None:intergenic 55.0%
AGGGAATAGAGGACTTCGGG+AGG + chr7_3:3443185-3443204 None:intergenic 55.0%
GGAGGAAGTGGAGGGAATAG+AGG + chr7_3:3443196-3443215 None:intergenic 55.0%
GTTTCGGAGTTTGGAGGGGA+AGG + chr7_3:3443247-3443266 None:intergenic 55.0%
TCTATGTACCGCCTCTCTGC+TGG + chr7_3:3443458-3443477 None:intergenic 55.0%
AAACTCCCGAACGGAGCCTT+AGG + chr7_3:3442935-3442954 None:intergenic 55.0%
TAAGGCTCCGTTCGGGAGTT+TGG - chr7_3:3442934-3442953 Msa1089840:intron 55.0%
TTTGGAGGGGAGGGAATGGA+TGG - chr7_3:3442952-3442971 Msa1089840:intron 55.0%
! GGAGGGAATGGATGGCTTTG+TGG - chr7_3:3442960-3442979 Msa1089840:intron 55.0%
!! GGGAATGGATGGCTTTGTGG+GGG - chr7_3:3442963-3442982 Msa1089840:intron 55.0%
!! AATGGATGGCTTTGTGGGGG+AGG - chr7_3:3442966-3442985 Msa1089840:intron 55.0%
!! ATGGATGGCTTTGTGGGGGA+GGG - chr7_3:3442967-3442986 Msa1089840:intron 55.0%
GGAATAGAGGACTTCGGGAG+GGG + chr7_3:3443183-3443202 None:intergenic 55.0%
GGGAATAGAGGACTTCGGGA+GGG + chr7_3:3443184-3443203 None:intergenic 55.0%
AGGGAATAGAGGACTTCGGG+AGG + chr7_3:3443185-3443204 None:intergenic 55.0%
GGAGGAAGTGGAGGGAATAG+AGG + chr7_3:3443196-3443215 None:intergenic 55.0%
GTTTCGGAGTTTGGAGGGGA+AGG + chr7_3:3443247-3443266 None:intergenic 55.0%
TCTATGTACCGCCTCTCTGC+TGG + chr7_3:3443458-3443477 None:intergenic 55.0%
GCTCCGTTCGGGAGTTTGGA+GGG - chr7_3:3442938-3442957 Msa1089840:intron 60.0%
CTCCGTTCGGGAGTTTGGAG+GGG - chr7_3:3442939-3442958 Msa1089840:intron 60.0%
CTCCCCTCCAAACTCCCGAA+CGG + chr7_3:3442944-3442963 None:intergenic 60.0%
GTTCGGGAGTTTGGAGGGGA+GGG - chr7_3:3442943-3442962 Msa1089840:intron 60.0%
GGAGTTTGGAGGGGAGGGAA+TGG - chr7_3:3442948-3442967 Msa1089840:intron 60.0%
! GGCTTTGTGGGGGAGGGAAA+CGG - chr7_3:3442973-3442992 Msa1089840:intron 60.0%
TAGAGGACTTCGGGAGGGGA+GGG + chr7_3:3443179-3443198 None:intergenic 60.0%
ATAGAGGACTTCGGGAGGGG+AGG + chr7_3:3443180-3443199 None:intergenic 60.0%
GCTCCGTTCGGGAGTTTGGA+GGG - chr7_3:3442938-3442957 Msa1089840:intron 60.0%
CTCCGTTCGGGAGTTTGGAG+GGG - chr7_3:3442939-3442958 Msa1089840:intron 60.0%
CTCCCCTCCAAACTCCCGAA+CGG + chr7_3:3442944-3442963 None:intergenic 60.0%
GTTCGGGAGTTTGGAGGGGA+GGG - chr7_3:3442943-3442962 Msa1089840:intron 60.0%
GGAGTTTGGAGGGGAGGGAA+TGG - chr7_3:3442948-3442967 Msa1089840:intron 60.0%
! GGCTTTGTGGGGGAGGGAAA+CGG - chr7_3:3442973-3442992 Msa1089840:intron 60.0%
TAGAGGACTTCGGGAGGGGA+GGG + chr7_3:3443179-3443198 None:intergenic 60.0%
ATAGAGGACTTCGGGAGGGG+AGG + chr7_3:3443180-3443199 None:intergenic 60.0%
GGCTCCGTTCGGGAGTTTGG+AGG - chr7_3:3442937-3442956 Msa1089840:intron 65.0%
CGTTCGGGAGTTTGGAGGGG+AGG - chr7_3:3442942-3442961 Msa1089840:intron 65.0%
TTCGGGAGGGGAGGGCTTTG+GGG + chr7_3:3443171-3443190 None:intergenic 65.0%
CTTCGGGAGGGGAGGGCTTT+GGG + chr7_3:3443172-3443191 None:intergenic 65.0%
ACTTCGGGAGGGGAGGGCTT+TGG + chr7_3:3443173-3443192 None:intergenic 65.0%
CGGAGTTTGGAGGGGAAGGG+AGG + chr7_3:3443243-3443262 None:intergenic 65.0%
GGCTCCGTTCGGGAGTTTGG+AGG - chr7_3:3442937-3442956 Msa1089840:intron 65.0%
CGTTCGGGAGTTTGGAGGGG+AGG - chr7_3:3442942-3442961 Msa1089840:intron 65.0%
TTCGGGAGGGGAGGGCTTTG+GGG + chr7_3:3443171-3443190 None:intergenic 65.0%
CTTCGGGAGGGGAGGGCTTT+GGG + chr7_3:3443172-3443191 None:intergenic 65.0%
ACTTCGGGAGGGGAGGGCTT+TGG + chr7_3:3443173-3443192 None:intergenic 65.0%
CGGAGTTTGGAGGGGAAGGG+AGG + chr7_3:3443243-3443262 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 3441834 3443888 3441834 ID=Msa1089840;Name=Msa1089840
chr7_3 mRNA 3441834 3443888 3441834 ID=Msa1089840-mRNA-1;Parent=Msa1089840;Name=Msa1089840-mRNA-1;_AED=0.01;_eAED=0.01;_QI=82|1|1|1|0.5|0.33|3|275|135
chr7_3 exon 3441834 3442371 3441834 ID=Msa1089840-mRNA-1:exon:1351;Parent=Msa1089840-mRNA-1
chr7_3 exon 3443304 3443450 3443304 ID=Msa1089840-mRNA-1:exon:1350;Parent=Msa1089840-mRNA-1
chr7_3 exon 3443809 3443888 3443809 ID=Msa1089840-mRNA-1:exon:1349;Parent=Msa1089840-mRNA-1
chr7_3 five_prime_UTR 3443809 3443888 3443809 ID=Msa1089840-mRNA-1:five_prime_utr;Parent=Msa1089840-mRNA-1
chr7_3 five_prime_UTR 3443449 3443450 3443449 ID=Msa1089840-mRNA-1:five_prime_utr;Parent=Msa1089840-mRNA-1
chr7_3 CDS 3443304 3443448 3443304 ID=Msa1089840-mRNA-1:cds;Parent=Msa1089840-mRNA-1
chr7_3 CDS 3442109 3442371 3442109 ID=Msa1089840-mRNA-1:cds;Parent=Msa1089840-mRNA-1
chr7_3 three_prime_UTR 3441834 3442108 3441834 ID=Msa1089840-mRNA-1:three_prime_utr;Parent=Msa1089840-mRNA-1
Gene Sequence

>Msa1089840

ATGTCGGCATATGAGAATGTTGTTGGTGGTAAACTGAAGCTGAAGGGAAAAGCATTGGATGTTGCTGGCGGAATCAAGAAGAAGAAAAAGAACAAAAGAAATCAACAACAGTTTTTGCAAGCAACTGAAGATGAAATCTCAGCAGGTGGAAGTACAGAACAAGCTAAAGATCCTAATGATCAAGAAGTAAATGATGGGAGTGAATTGAGCAGGGAAGAGAAGCCTGCTCATTATGATGATCATCTTACACCAGCAGAGAGGCGGTACATAGAACAGAGGGAGCAACTTGATGTTCATAGATTGGCCAAGATTTCTAATAAATCTCACCGCGATAGAATCCAGGATTTCAACCAATATCTCGCAAACATGAGCGAGCATTATGATATTCCTAAAGTTGGTCCTGGATGA

Protein sequence

>Msa1089840

MSAYENVVGGKLKLKGKALDVAGGIKKKKKNKRNQQQFLQATEDEISAGGSTEQAKDPNDQEVNDGSELSREEKPAHYDDHLTPAERRYIEQREQLDVHRLAKISNKSHRDRIQDFNQYLANMSEHYDIPKVGPG*