Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0388230 | PNY16352.1 | 100.000 | 74 | 0 | 0 | 1 | 74 | 1 | 74 | 8.55e-46 | 152 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0388230 | sp|Q54VA8|TRM7_DICDI | 82.432 | 74 | 12 | 1 | 1 | 74 | 1 | 73 | 3.36e-38 | 130 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0388230 | A0A2K3PM41 | 100.000 | 74 | 0 | 0 | 1 | 74 | 1 | 74 | 4.09e-46 | 152 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003890 | Msa0388230 | 0.813967 | 1.957364e-51 | -8.615850e-47 |
| Msa0032090 | Msa0388230 | 0.829315 | 5.514595e-55 | -8.615850e-47 |
| Msa0032430 | Msa0388230 | 0.827686 | 1.364188e-54 | -8.615850e-47 |
| Msa0050390 | Msa0388230 | 0.803819 | 2.906106e-49 | -8.615850e-47 |
| Msa0074240 | Msa0388230 | 0.817235 | 3.663997e-52 | -8.615850e-47 |
| Msa0079380 | Msa0388230 | 0.847651 | 1.010284e-59 | -8.615850e-47 |
| Msa0084380 | Msa0388230 | 0.814850 | 1.248513e-51 | -8.615850e-47 |
| Msa0127050 | Msa0388230 | 0.802714 | 4.920288e-49 | -8.615850e-47 |
| Msa0172070 | Msa0388230 | 0.827700 | 1.353200e-54 | -8.615850e-47 |
| Msa0187120 | Msa0388230 | 0.804152 | 2.477517e-49 | -8.615850e-47 |
| Msa0211150 | Msa0388230 | 0.817427 | 3.316620e-52 | -8.615850e-47 |
| Msa0212990 | Msa0388230 | 0.812962 | 3.255265e-51 | -8.615850e-47 |
| Msa0378720 | Msa0388230 | 0.822891 | 1.858256e-53 | -8.615850e-47 |
| Msa0388230 | Msa0392510 | 0.819100 | 1.386676e-52 | -8.615850e-47 |
| Msa0388230 | Msa0405130 | 0.803669 | 3.122301e-49 | -8.615850e-47 |
| Msa0388230 | Msa0428080 | 0.813296 | 2.749986e-51 | -8.615850e-47 |
| Msa0388230 | Msa0474730 | 0.800198 | 1.612574e-48 | -8.615850e-47 |
| Msa0388230 | Msa0569200 | 0.834378 | 3.102552e-56 | -8.615850e-47 |
| Msa0388230 | Msa0602390 | 0.800469 | 1.420299e-48 | -8.615850e-47 |
| Msa0388230 | Msa0663810 | 0.815617 | 8.436049e-52 | -8.615850e-47 |
| Msa0388230 | Msa0698920 | 0.808890 | 2.479107e-50 | -8.615850e-47 |
| Msa0388230 | Msa0741840 | 0.813769 | 2.164116e-51 | -8.615850e-47 |
| Msa0388230 | Msa0793800 | 0.801988 | 6.943532e-49 | -8.615850e-47 |
| Msa0388230 | Msa0831110 | 0.803434 | 3.493130e-49 | -8.615850e-47 |
| Msa0388230 | Msa0861600 | 0.801480 | 8.828620e-49 | -8.615850e-47 |
| Msa0388230 | Msa0866520 | 0.816579 | 5.142595e-52 | -8.615850e-47 |
| Msa0388230 | Msa0871270 | 0.821450 | 4.011325e-53 | -8.615850e-47 |
| Msa0388230 | Msa0899980 | 0.817990 | 2.475687e-52 | -8.615850e-47 |
| Msa0388230 | Msa0938220 | 0.815845 | 7.501569e-52 | -8.615850e-47 |
| Msa0388230 | Msa0965360 | 0.800550 | 1.367646e-48 | -8.615850e-47 |
| Msa0388230 | Msa0974070 | 0.808367 | 3.207256e-50 | -8.615850e-47 |
| Msa0388230 | Msa0999870 | 0.818614 | 1.788385e-52 | -8.615850e-47 |
| Msa0388230 | Msa1002000 | 0.816577 | 5.146272e-52 | -8.615850e-47 |
| Msa0388230 | Msa1004800 | 0.810266 | 1.255590e-50 | -8.615850e-47 |
| Msa0388230 | Msa1004840 | 0.801000 | 1.106590e-48 | -8.615850e-47 |
| Msa0388230 | Msa1075650 | 0.811312 | 7.456881e-51 | -8.615850e-47 |
| Msa0388230 | Msa1078170 | 0.806413 | 8.327029e-50 | -8.615850e-47 |
| Msa0388230 | Msa1123380 | 0.818451 | 1.946482e-52 | -8.615850e-47 |
| Msa0388230 | Msa1162780 | 0.817627 | 2.990104e-52 | -8.615850e-47 |
| Msa0388230 | Msa1171710 | 0.800591 | 1.341631e-48 | -8.615850e-47 |
| Msa0388230 | Msa1193290 | 0.801710 | 7.918867e-49 | -8.615850e-47 |
| Msa0388230 | Msa1199570 | 0.800525 | 1.383693e-48 | -8.615850e-47 |
| Msa0388230 | Msa1287460 | 0.804356 | 2.246898e-49 | -8.615850e-47 |
| Msa0388230 | Msa1328710 | 0.803026 | 4.241423e-49 | -8.615850e-47 |
| Msa0388230 | Msa1346370 | 0.803101 | 4.093593e-49 | -8.615850e-47 |
| Msa0388230 | Msa1388970 | 0.819366 | 1.206344e-52 | -8.615850e-47 |
| Msa0388230 | Msa1423350 | 0.801750 | 7.772153e-49 | -8.615850e-47 |
| Msa0388230 | Msa1424750 | 0.805550 | 1.264443e-49 | -8.615850e-47 |
| Msa0388230 | Msa1425880 | 0.800472 | 1.418615e-48 | -8.615850e-47 |
| Msa0388230 | Msa1440310 | 0.806093 | 9.722145e-50 | -8.615850e-47 |
| Msa0388230 | Msa1451160 | 0.819889 | 9.163192e-53 | -8.615850e-47 |
| Msa0388230 | Msa1461300 | 0.803978 | 2.693497e-49 | -8.615850e-47 |
| Msa0388230 | Msa1466540 | 0.826734 | 2.306097e-54 | -8.615850e-47 |
| Msa0330340 | Msa0388230 | 0.812641 | 3.827620e-51 | -8.615850e-47 |
| Msa0337700 | Msa0388230 | 0.803806 | 2.923768e-49 | -8.615850e-47 |
| Msa0358890 | Msa0388230 | 0.813660 | 2.287936e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0388230 | MtrunA17_Chr2g0282131 | 100.000 | 74 | 0 | 0 | 1 | 74 | 1 | 74 | 8.55e-48 | 153 |
| Msa0388230 | MtrunA17_Chr4g0040381 | 45.455 | 66 | 33 | 1 | 1 | 63 | 1 | 66 | 1.63e-13 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0388230 | AT5G01230.1 | 91.892 | 74 | 6 | 0 | 1 | 74 | 1 | 74 | 2.68e-43 | 142 |
| Msa0388230 | AT5G01230.2 | 100.000 | 57 | 0 | 0 | 1 | 57 | 1 | 57 | 1.88e-37 | 119 |
| Msa0388230 | AT4G25730.1 | 48.438 | 64 | 32 | 1 | 1 | 63 | 1 | 64 | 6.01e-14 | 65.1 |
Find 26 sgRNAs with CRISPR-Local
Find 228 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTGTTGGATAGTTTGATTC+AGG | 0.249399 | 3_1:-92626754 | Msa0388230:five_prime_UTR |
| ATTTAATTTGCATCATAAAC+CGG | 0.346350 | 3_1:+92626931 | None:intergenic |
| TGCTCCAGGCAGCTGGAGTC+AGG | 0.367296 | 3_1:-92626136 | Msa0388230:intron |
| TGTGATTCTGTGAAATTTGT+TGG | 0.370019 | 3_1:-92626769 | Msa0388230:five_prime_UTR |
| GCATCAGGTGCAAGCTTGGC+TGG | 0.374216 | 3_1:+92625173 | None:intergenic |
| GCAAAGCTTCAAGGGATAAG+AGG | 0.379131 | 3_1:-92626574 | Msa0388230:CDS |
| CTTTGCATCAGGTGCAAGCT+TGG | 0.398733 | 3_1:+92625169 | None:intergenic |
| ATAGTTTGATTCAGGAGAAA+AGG | 0.443837 | 3_1:-92626746 | Msa0388230:intron |
| TGGAAAACTTACTTTGCATC+AGG | 0.444078 | 3_1:+92625158 | None:intergenic |
| TATGTGCTGCTCCAGGCAGC+TGG | 0.452462 | 3_1:-92626143 | Msa0388230:CDS |
| AAACCATGGGCAAAGCTTCA+AGG | 0.459913 | 3_1:-92626583 | Msa0388230:exon |
| ATCCCTTGAAGCTTTGCCCA+TGG | 0.475121 | 3_1:+92626580 | None:intergenic |
| AGTACCTGACTCCAGCTGCC+TGG | 0.508337 | 3_1:+92626132 | None:intergenic |
| ATTGAAGAAGCCATGAACTT+AGG | 0.519813 | 3_1:+92626876 | None:intergenic |
| CAGGTGCAAGCTTGGCTGGA+AGG | 0.527605 | 3_1:+92625177 | None:intergenic |
| GTAGATTTATGTGCTGCTCC+AGG | 0.528472 | 3_1:-92626150 | Msa0388230:CDS |
| TACCGAAAAGCGAAAGAAGA+AGG | 0.538413 | 3_1:-92626455 | Msa0388230:CDS |
| AACCATGGGCAAAGCTTCAA+GGG | 0.544253 | 3_1:-92626582 | Msa0388230:exon |
| TTTAATTTGCATCATAAACC+GGG | 0.550013 | 3_1:+92626932 | None:intergenic |
| GAAAAGCGAAAGAAGAAGGT+TGG | 0.578774 | 3_1:-92626451 | Msa0388230:CDS |
| CAAAGCTTCAAGGGATAAGA+GGG | 0.579751 | 3_1:-92626573 | Msa0388230:intron |
| GTTTCTTAGGCAAGTAAGTG+AGG | 0.591445 | 3_1:-92626609 | Msa0388230:intron |
| GAAGAAGCCATGAACTTAGG+AGG | 0.598700 | 3_1:+92626879 | None:intergenic |
| AGTAAGTGAGGAATAAACCA+TGG | 0.627845 | 3_1:-92626597 | Msa0388230:exon |
| GTAAGTGAGGAATAAACCAT+GGG | 0.651712 | 3_1:-92626596 | Msa0388230:exon |
| AGAATCTCGTACAGTGTACG+AGG | 0.708517 | 3_1:+92626851 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTATATAAATGAAAACTTT+GGG | + | chr3_1:92626520-92626539 | None:intergenic | 10.0% |
| !!! | TTTTATATAAATGAAAACTT+TGG | + | chr3_1:92626521-92626540 | None:intergenic | 10.0% |
| !!! | TAAATTTTTAAAGTATTATC+CGG | + | chr3_1:92626866-92626885 | None:intergenic | 10.0% |
| !! | TTTATATAAATGAAAACTTT+GGG | + | chr3_1:92626520-92626539 | None:intergenic | 10.0% |
| !!! | TTTTATATAAATGAAAACTT+TGG | + | chr3_1:92626521-92626540 | None:intergenic | 10.0% |
| !!! | TAAATTTTTAAAGTATTATC+CGG | + | chr3_1:92626866-92626885 | None:intergenic | 10.0% |
| !!! | TTTTTTTTTTGTTGGTTTTT+TGG | - | chr3_1:92625570-92625589 | Msa0388230:intron | 15.0% |
| !!! | TTTTTTTTTGTTGGTTTTTT+GGG | - | chr3_1:92625571-92625590 | Msa0388230:intron | 15.0% |
| !! | AATTACATTTAAATGATACT+AGG | + | chr3_1:92626124-92626143 | None:intergenic | 15.0% |
| !!! | CTTAAAGTGAATTATATTTT+AGG | + | chr3_1:92626367-92626386 | None:intergenic | 15.0% |
| !! | CTAAAATATAATTCACTTTA+AGG | - | chr3_1:92626365-92626384 | Msa0388230:intron | 15.0% |
| !! | TTATATAAATGAAAACTTTG+GGG | + | chr3_1:92626519-92626538 | None:intergenic | 15.0% |
| !!! | TACTTTAAAAATTTATATGC+AGG | - | chr3_1:92626871-92626890 | Msa0388230:five_prime_UTR | 15.0% |
| !!! | TTTTTTTTTTGTTGGTTTTT+TGG | - | chr3_1:92625570-92625589 | Msa0388230:intron | 15.0% |
| !!! | TTTTTTTTTGTTGGTTTTTT+GGG | - | chr3_1:92625571-92625590 | Msa0388230:intron | 15.0% |
| !! | AATTACATTTAAATGATACT+AGG | + | chr3_1:92626124-92626143 | None:intergenic | 15.0% |
| !!! | CTTAAAGTGAATTATATTTT+AGG | + | chr3_1:92626367-92626386 | None:intergenic | 15.0% |
| !! | CTAAAATATAATTCACTTTA+AGG | - | chr3_1:92626365-92626384 | Msa0388230:intron | 15.0% |
| !! | TTATATAAATGAAAACTTTG+GGG | + | chr3_1:92626519-92626538 | None:intergenic | 15.0% |
| !!! | TACTTTAAAAATTTATATGC+AGG | - | chr3_1:92626871-92626890 | Msa0388230:five_prime_UTR | 15.0% |
| !!! | ATTTAATTTGCATCATAAAC+CGG | + | chr3_1:92625162-92625181 | None:intergenic | 20.0% |
| !!! | CTGTTCTTTTTTTTTTTTGT+TGG | - | chr3_1:92625562-92625581 | Msa0388230:intron | 20.0% |
| !!! | TTTTTTTTGTTGGTTTTTTG+GGG | - | chr3_1:92625572-92625591 | Msa0388230:intron | 20.0% |
| !!! | GAAGAATTTAACATTTTTGA+AGG | - | chr3_1:92625698-92625717 | Msa0388230:intron | 20.0% |
| !! | ATAATTAAAATCAGCTTTCA+AGG | + | chr3_1:92625737-92625756 | None:intergenic | 20.0% |
| !! | CTATCTCTAATTATATATTC+AGG | + | chr3_1:92625817-92625836 | None:intergenic | 20.0% |
| !! | ATTCTTAAGATAAGTTTAAG+AGG | + | chr3_1:92626262-92626281 | None:intergenic | 20.0% |
| !!! | AATATAATTCACTTTAAGGA+AGG | - | chr3_1:92626369-92626388 | Msa0388230:intron | 20.0% |
| !! | TATATAAATGAAAACTTTGG+GGG | + | chr3_1:92626518-92626537 | None:intergenic | 20.0% |
| !! | TAAAAAAGATAACACCATTA+CGG | - | chr3_1:92626700-92626719 | Msa0388230:intron | 20.0% |
| !!! | ATTTAATTTGCATCATAAAC+CGG | + | chr3_1:92625162-92625181 | None:intergenic | 20.0% |
| !!! | CTGTTCTTTTTTTTTTTTGT+TGG | - | chr3_1:92625562-92625581 | Msa0388230:intron | 20.0% |
| !!! | TTTTTTTTGTTGGTTTTTTG+GGG | - | chr3_1:92625572-92625591 | Msa0388230:intron | 20.0% |
| !!! | GAAGAATTTAACATTTTTGA+AGG | - | chr3_1:92625698-92625717 | Msa0388230:intron | 20.0% |
| !! | ATAATTAAAATCAGCTTTCA+AGG | + | chr3_1:92625737-92625756 | None:intergenic | 20.0% |
| !! | CTATCTCTAATTATATATTC+AGG | + | chr3_1:92625817-92625836 | None:intergenic | 20.0% |
| !! | ATTCTTAAGATAAGTTTAAG+AGG | + | chr3_1:92626262-92626281 | None:intergenic | 20.0% |
| !!! | AATATAATTCACTTTAAGGA+AGG | - | chr3_1:92626369-92626388 | Msa0388230:intron | 20.0% |
| !! | TATATAAATGAAAACTTTGG+GGG | + | chr3_1:92626518-92626537 | None:intergenic | 20.0% |
| !! | TAAAAAAGATAACACCATTA+CGG | - | chr3_1:92626700-92626719 | Msa0388230:intron | 20.0% |
| !!! | GTTGTATGTTTTTGTTTCTT+AGG | - | chr3_1:92625468-92625487 | Msa0388230:intron | 25.0% |
| ! | TGATTTGATGTTAGCTAAAT+TGG | - | chr3_1:92625596-92625615 | Msa0388230:intron | 25.0% |
| ! | ATTACTATCTCTGCTAAAAA+TGG | + | chr3_1:92625785-92625804 | None:intergenic | 25.0% |
| ! | TGAAACTATAAGTAATACAG+TGG | + | chr3_1:92625887-92625906 | None:intergenic | 25.0% |
| ! | TGTAATTGACATGAATATCT+TGG | - | chr3_1:92626137-92626156 | Msa0388230:CDS | 25.0% |
| ! | TAAGATAAGTTTAAGAGGAA+GGG | + | chr3_1:92626257-92626276 | None:intergenic | 25.0% |
| ! | TTAAGATAAGTTTAAGAGGA+AGG | + | chr3_1:92626258-92626277 | None:intergenic | 25.0% |
| !! | AACAGCAAATGATTTTTGAT+GGG | + | chr3_1:92626676-92626695 | None:intergenic | 25.0% |
| !! | AAACAGCAAATGATTTTTGA+TGG | + | chr3_1:92626677-92626696 | None:intergenic | 25.0% |
| ! | TATTGCCATGTATAAACAAT+AGG | - | chr3_1:92626786-92626805 | Msa0388230:five_prime_UTR | 25.0% |
| ! | ATTGCCATGTATAAACAATA+GGG | - | chr3_1:92626787-92626806 | Msa0388230:five_prime_UTR | 25.0% |
| !!! | TTTAATTTGCATCATAAACC+GGG | + | chr3_1:92625161-92625180 | None:intergenic | 25.0% |
| !!! | GTTGTATGTTTTTGTTTCTT+AGG | - | chr3_1:92625468-92625487 | Msa0388230:intron | 25.0% |
| ! | TGATTTGATGTTAGCTAAAT+TGG | - | chr3_1:92625596-92625615 | Msa0388230:intron | 25.0% |
| ! | ATTACTATCTCTGCTAAAAA+TGG | + | chr3_1:92625785-92625804 | None:intergenic | 25.0% |
| ! | TGAAACTATAAGTAATACAG+TGG | + | chr3_1:92625887-92625906 | None:intergenic | 25.0% |
| ! | TGTAATTGACATGAATATCT+TGG | - | chr3_1:92626137-92626156 | Msa0388230:CDS | 25.0% |
| ! | TAAGATAAGTTTAAGAGGAA+GGG | + | chr3_1:92626257-92626276 | None:intergenic | 25.0% |
| ! | TTAAGATAAGTTTAAGAGGA+AGG | + | chr3_1:92626258-92626277 | None:intergenic | 25.0% |
| !! | AACAGCAAATGATTTTTGAT+GGG | + | chr3_1:92626676-92626695 | None:intergenic | 25.0% |
| !! | AAACAGCAAATGATTTTTGA+TGG | + | chr3_1:92626677-92626696 | None:intergenic | 25.0% |
| ! | TATTGCCATGTATAAACAAT+AGG | - | chr3_1:92626786-92626805 | Msa0388230:five_prime_UTR | 25.0% |
| ! | ATTGCCATGTATAAACAATA+GGG | - | chr3_1:92626787-92626806 | Msa0388230:five_prime_UTR | 25.0% |
| TAGAACACAAAAACGAATAC+AGG | + | chr3_1:92625295-92625314 | None:intergenic | 30.0% | |
| TGTGATTCTGTGAAATTTGT+TGG | - | chr3_1:92625321-92625340 | Msa0388230:intron | 30.0% | |
| TTTGTTGGATAGTTTGATTC+AGG | - | chr3_1:92625336-92625355 | Msa0388230:intron | 30.0% | |
| ATAGTTTGATTCAGGAGAAA+AGG | - | chr3_1:92625344-92625363 | Msa0388230:intron | 30.0% | |
| AGAGATAGTAGTTAATGTCT+CGG | - | chr3_1:92625829-92625848 | Msa0388230:intron | 30.0% | |
| !!! | TCAATTTCGTTCTTTTTTGC+AGG | - | chr3_1:92625904-92625923 | Msa0388230:intron | 30.0% |
| !!! | CAATTTCGTTCTTTTTTGCA+GGG | - | chr3_1:92625905-92625924 | Msa0388230:intron | 30.0% |
| !!! | AATTTCGTTCTTTTTTGCAG+GGG | - | chr3_1:92625906-92625925 | Msa0388230:intron | 30.0% |
| CAATTACCAAACACAAACTA+TGG | - | chr3_1:92626040-92626059 | Msa0388230:intron | 30.0% | |
| ATCTTGGTTTAGATTTCTTC+TGG | - | chr3_1:92626153-92626172 | Msa0388230:CDS | 30.0% | |
| AAGATAAGTTTAAGAGGAAG+GGG | + | chr3_1:92626256-92626275 | None:intergenic | 30.0% | |
| TAACTGATATCACAACACAA+AGG | + | chr3_1:92626301-92626320 | None:intergenic | 30.0% | |
| GGATTTGAATTTAAACCTAG+AGG | - | chr3_1:92626390-92626409 | Msa0388230:intron | 30.0% | |
| ! | AAACAATGATAATGACCTCT+AGG | + | chr3_1:92626408-92626427 | None:intergenic | 30.0% |
| !! | GACTATTTCTAAGAAACAAG+TGG | + | chr3_1:92626621-92626640 | None:intergenic | 30.0% |
| ATGAAAACCAAATCAGACTT+GGG | - | chr3_1:92626723-92626742 | Msa0388230:intron | 30.0% | |
| TTGCCATGTATAAACAATAG+GGG | - | chr3_1:92626788-92626807 | Msa0388230:five_prime_UTR | 30.0% | |
| !! | TTAATTTGCATCATAAACCG+GGG | + | chr3_1:92625160-92625179 | None:intergenic | 30.0% |
| TAGAACACAAAAACGAATAC+AGG | + | chr3_1:92625295-92625314 | None:intergenic | 30.0% | |
| TGTGATTCTGTGAAATTTGT+TGG | - | chr3_1:92625321-92625340 | Msa0388230:intron | 30.0% | |
| TTTGTTGGATAGTTTGATTC+AGG | - | chr3_1:92625336-92625355 | Msa0388230:intron | 30.0% | |
| ATAGTTTGATTCAGGAGAAA+AGG | - | chr3_1:92625344-92625363 | Msa0388230:intron | 30.0% | |
| AGAGATAGTAGTTAATGTCT+CGG | - | chr3_1:92625829-92625848 | Msa0388230:intron | 30.0% | |
| !!! | TCAATTTCGTTCTTTTTTGC+AGG | - | chr3_1:92625904-92625923 | Msa0388230:intron | 30.0% |
| !!! | CAATTTCGTTCTTTTTTGCA+GGG | - | chr3_1:92625905-92625924 | Msa0388230:intron | 30.0% |
| !!! | AATTTCGTTCTTTTTTGCAG+GGG | - | chr3_1:92625906-92625925 | Msa0388230:intron | 30.0% |
| CAATTACCAAACACAAACTA+TGG | - | chr3_1:92626040-92626059 | Msa0388230:intron | 30.0% | |
| ATCTTGGTTTAGATTTCTTC+TGG | - | chr3_1:92626153-92626172 | Msa0388230:CDS | 30.0% | |
| AAGATAAGTTTAAGAGGAAG+GGG | + | chr3_1:92626256-92626275 | None:intergenic | 30.0% | |
| TAACTGATATCACAACACAA+AGG | + | chr3_1:92626301-92626320 | None:intergenic | 30.0% | |
| GGATTTGAATTTAAACCTAG+AGG | - | chr3_1:92626390-92626409 | Msa0388230:intron | 30.0% | |
| ! | AAACAATGATAATGACCTCT+AGG | + | chr3_1:92626408-92626427 | None:intergenic | 30.0% |
| !! | GACTATTTCTAAGAAACAAG+TGG | + | chr3_1:92626621-92626640 | None:intergenic | 30.0% |
| ATGAAAACCAAATCAGACTT+GGG | - | chr3_1:92626723-92626742 | Msa0388230:intron | 30.0% | |
| TTGCCATGTATAAACAATAG+GGG | - | chr3_1:92626788-92626807 | Msa0388230:five_prime_UTR | 30.0% | |
| ! | AGTGCTTTTGTAACGAAACT+GGG | + | chr3_1:92625187-92625206 | None:intergenic | 35.0% |
| ! | AAGTGCTTTTGTAACGAAAC+TGG | + | chr3_1:92625188-92625207 | None:intergenic | 35.0% |
| ATTGAAGAAGCCATGAACTT+AGG | + | chr3_1:92625217-92625236 | None:intergenic | 35.0% | |
| AGTAAGTGAGGAATAAACCA+TGG | - | chr3_1:92625493-92625512 | Msa0388230:intron | 35.0% | |
| GTAAGTGAGGAATAAACCAT+GGG | - | chr3_1:92625494-92625513 | Msa0388230:intron | 35.0% | |
| !! | TGTTAGCTAAATTGGTTTGC+AGG | - | chr3_1:92625604-92625623 | Msa0388230:intron | 35.0% |
| !! | AACCTTCTTCTTTCGCTTTT+CGG | + | chr3_1:92625640-92625659 | None:intergenic | 35.0% |
| AATGTCTCGGAAATAGTGAA+AGG | - | chr3_1:92625842-92625861 | Msa0388230:intron | 35.0% | |
| ! | TGAGAAGAAGTACAAGAGAA+TGG | + | chr3_1:92626003-92626022 | None:intergenic | 35.0% |
| AAGAAACCGTAATGTCAATG+AGG | - | chr3_1:92626087-92626106 | Msa0388230:intron | 35.0% | |
| AGAAACCGTAATGTCAATGA+GGG | - | chr3_1:92626088-92626107 | Msa0388230:intron | 35.0% | |
| TCTGGTTATCCTTCATTGAT+AGG | - | chr3_1:92626171-92626190 | Msa0388230:intron | 35.0% | |
| CATAGACAACCTATCAATGA+AGG | + | chr3_1:92626183-92626202 | None:intergenic | 35.0% | |
| AGATAAGTTTAAGAGGAAGG+GGG | + | chr3_1:92626255-92626274 | None:intergenic | 35.0% | |
| !! | AACACAAAGGAGTACTATAC+AGG | + | chr3_1:92626288-92626307 | None:intergenic | 35.0% |
| ! | TCTAGTACAACTGGATTTTC+AGG | + | chr3_1:92626596-92626615 | None:intergenic | 35.0% |
| AGTCTAACTATTAACAGACC+TGG | - | chr3_1:92626637-92626656 | Msa0388230:intron | 35.0% | |
| !!! | GATTTGGTTTTCATCCGTAA+TGG | + | chr3_1:92626717-92626736 | None:intergenic | 35.0% |
| GATGAAAACCAAATCAGACT+TGG | - | chr3_1:92626722-92626741 | Msa0388230:intron | 35.0% | |
| ATTCATACCCAAGTCTGATT+TGG | + | chr3_1:92626733-92626752 | None:intergenic | 35.0% | |
| TGCCATGTATAAACAATAGG+GGG | - | chr3_1:92626789-92626808 | Msa0388230:five_prime_UTR | 35.0% | |
| ! | AGTGCTTTTGTAACGAAACT+GGG | + | chr3_1:92625187-92625206 | None:intergenic | 35.0% |
| ! | AAGTGCTTTTGTAACGAAAC+TGG | + | chr3_1:92625188-92625207 | None:intergenic | 35.0% |
| ATTGAAGAAGCCATGAACTT+AGG | + | chr3_1:92625217-92625236 | None:intergenic | 35.0% | |
| AGTAAGTGAGGAATAAACCA+TGG | - | chr3_1:92625493-92625512 | Msa0388230:intron | 35.0% | |
| GTAAGTGAGGAATAAACCAT+GGG | - | chr3_1:92625494-92625513 | Msa0388230:intron | 35.0% | |
| !! | TGTTAGCTAAATTGGTTTGC+AGG | - | chr3_1:92625604-92625623 | Msa0388230:intron | 35.0% |
| !! | AACCTTCTTCTTTCGCTTTT+CGG | + | chr3_1:92625640-92625659 | None:intergenic | 35.0% |
| AATGTCTCGGAAATAGTGAA+AGG | - | chr3_1:92625842-92625861 | Msa0388230:intron | 35.0% | |
| ! | TGAGAAGAAGTACAAGAGAA+TGG | + | chr3_1:92626003-92626022 | None:intergenic | 35.0% |
| AAGAAACCGTAATGTCAATG+AGG | - | chr3_1:92626087-92626106 | Msa0388230:intron | 35.0% | |
| AGAAACCGTAATGTCAATGA+GGG | - | chr3_1:92626088-92626107 | Msa0388230:intron | 35.0% | |
| TCTGGTTATCCTTCATTGAT+AGG | - | chr3_1:92626171-92626190 | Msa0388230:intron | 35.0% | |
| CATAGACAACCTATCAATGA+AGG | + | chr3_1:92626183-92626202 | None:intergenic | 35.0% | |
| AGATAAGTTTAAGAGGAAGG+GGG | + | chr3_1:92626255-92626274 | None:intergenic | 35.0% | |
| !! | AACACAAAGGAGTACTATAC+AGG | + | chr3_1:92626288-92626307 | None:intergenic | 35.0% |
| ! | TCTAGTACAACTGGATTTTC+AGG | + | chr3_1:92626596-92626615 | None:intergenic | 35.0% |
| AGTCTAACTATTAACAGACC+TGG | - | chr3_1:92626637-92626656 | Msa0388230:intron | 35.0% | |
| !!! | GATTTGGTTTTCATCCGTAA+TGG | + | chr3_1:92626717-92626736 | None:intergenic | 35.0% |
| GATGAAAACCAAATCAGACT+TGG | - | chr3_1:92626722-92626741 | Msa0388230:intron | 35.0% | |
| ATTCATACCCAAGTCTGATT+TGG | + | chr3_1:92626733-92626752 | None:intergenic | 35.0% | |
| TGCCATGTATAAACAATAGG+GGG | - | chr3_1:92626789-92626808 | Msa0388230:five_prime_UTR | 35.0% | |
| ! | ACTTTTGCCTCCTAAGTTCA+TGG | - | chr3_1:92625204-92625223 | Msa0388230:intron | 40.0% |
| CAGACATTTACTCAAACACC+TGG | + | chr3_1:92625402-92625421 | None:intergenic | 40.0% | |
| GTTTCTTAGGCAAGTAAGTG+AGG | - | chr3_1:92625481-92625500 | Msa0388230:intron | 40.0% | |
| CAAAGCTTCAAGGGATAAGA+GGG | - | chr3_1:92625517-92625536 | Msa0388230:intron | 40.0% | |
| TACCGAAAAGCGAAAGAAGA+AGG | - | chr3_1:92625635-92625654 | Msa0388230:intron | 40.0% | |
| GAAAAGCGAAAGAAGAAGGT+TGG | - | chr3_1:92625639-92625658 | Msa0388230:intron | 40.0% | |
| ! | AAAGCGCCATAGTTTGTGTT+TGG | + | chr3_1:92626049-92626068 | None:intergenic | 40.0% |
| GAAACCGTAATGTCAATGAG+GGG | - | chr3_1:92626089-92626108 | Msa0388230:intron | 40.0% | |
| CAATCCCCTCATTGACATTA+CGG | + | chr3_1:92626096-92626115 | None:intergenic | 40.0% | |
| GATAAGTTTAAGAGGAAGGG+GGG | + | chr3_1:92626254-92626273 | None:intergenic | 40.0% | |
| ! | AAATGAAAACTTTGGGGGCT+GGG | + | chr3_1:92626513-92626532 | None:intergenic | 40.0% |
| ! | TAAATGAAAACTTTGGGGGC+TGG | + | chr3_1:92626514-92626533 | None:intergenic | 40.0% |
| TGCCTCACTAATGCAAATGA+AGG | - | chr3_1:92626558-92626577 | Msa0388230:intron | 40.0% | |
| CTCCTTCATTTGCATTAGTG+AGG | + | chr3_1:92626563-92626582 | None:intergenic | 40.0% | |
| CTCACTAATGCAAATGAAGG+AGG | - | chr3_1:92626561-92626580 | Msa0388230:intron | 40.0% | |
| !! | CAAGTGGTTTCTAGTACAAC+TGG | + | chr3_1:92626605-92626624 | None:intergenic | 40.0% |
| GCCATGTATAAACAATAGGG+GGG | - | chr3_1:92626790-92626809 | Msa0388230:five_prime_UTR | 40.0% | |
| TCCCCCCTATTGTTTATACA+TGG | + | chr3_1:92626794-92626813 | None:intergenic | 40.0% | |
| GTTGCAGCTATCTTGATATC+CGG | - | chr3_1:92626844-92626863 | Msa0388230:five_prime_UTR | 40.0% | |
| ! | ACTTTTGCCTCCTAAGTTCA+TGG | - | chr3_1:92625204-92625223 | Msa0388230:intron | 40.0% |
| CAGACATTTACTCAAACACC+TGG | + | chr3_1:92625402-92625421 | None:intergenic | 40.0% | |
| GTTTCTTAGGCAAGTAAGTG+AGG | - | chr3_1:92625481-92625500 | Msa0388230:intron | 40.0% | |
| CAAAGCTTCAAGGGATAAGA+GGG | - | chr3_1:92625517-92625536 | Msa0388230:intron | 40.0% | |
| TACCGAAAAGCGAAAGAAGA+AGG | - | chr3_1:92625635-92625654 | Msa0388230:intron | 40.0% | |
| GAAAAGCGAAAGAAGAAGGT+TGG | - | chr3_1:92625639-92625658 | Msa0388230:intron | 40.0% | |
| ! | AAAGCGCCATAGTTTGTGTT+TGG | + | chr3_1:92626049-92626068 | None:intergenic | 40.0% |
| GAAACCGTAATGTCAATGAG+GGG | - | chr3_1:92626089-92626108 | Msa0388230:intron | 40.0% | |
| CAATCCCCTCATTGACATTA+CGG | + | chr3_1:92626096-92626115 | None:intergenic | 40.0% | |
| GATAAGTTTAAGAGGAAGGG+GGG | + | chr3_1:92626254-92626273 | None:intergenic | 40.0% | |
| ! | AAATGAAAACTTTGGGGGCT+GGG | + | chr3_1:92626513-92626532 | None:intergenic | 40.0% |
| ! | TAAATGAAAACTTTGGGGGC+TGG | + | chr3_1:92626514-92626533 | None:intergenic | 40.0% |
| TGCCTCACTAATGCAAATGA+AGG | - | chr3_1:92626558-92626577 | Msa0388230:intron | 40.0% | |
| CTCCTTCATTTGCATTAGTG+AGG | + | chr3_1:92626563-92626582 | None:intergenic | 40.0% | |
| CTCACTAATGCAAATGAAGG+AGG | - | chr3_1:92626561-92626580 | Msa0388230:intron | 40.0% | |
| !! | CAAGTGGTTTCTAGTACAAC+TGG | + | chr3_1:92626605-92626624 | None:intergenic | 40.0% |
| GCCATGTATAAACAATAGGG+GGG | - | chr3_1:92626790-92626809 | Msa0388230:five_prime_UTR | 40.0% | |
| TCCCCCCTATTGTTTATACA+TGG | + | chr3_1:92626794-92626813 | None:intergenic | 40.0% | |
| GTTGCAGCTATCTTGATATC+CGG | - | chr3_1:92626844-92626863 | Msa0388230:five_prime_UTR | 40.0% | |
| GAAGAAGCCATGAACTTAGG+AGG | + | chr3_1:92625214-92625233 | None:intergenic | 45.0% | |
| AGAATCTCGTACAGTGTACG+AGG | + | chr3_1:92625242-92625261 | None:intergenic | 45.0% | |
| CCTGGAGTGCATATCAACAT+AGG | + | chr3_1:92625384-92625403 | None:intergenic | 45.0% | |
| CCTATGTTGATATGCACTCC+AGG | - | chr3_1:92625381-92625400 | Msa0388230:intron | 45.0% | |
| AAACCATGGGCAAAGCTTCA+AGG | - | chr3_1:92625507-92625526 | Msa0388230:intron | 45.0% | |
| AACCATGGGCAAAGCTTCAA+GGG | - | chr3_1:92625508-92625527 | Msa0388230:intron | 45.0% | |
| GCAAAGCTTCAAGGGATAAG+AGG | - | chr3_1:92625516-92625535 | Msa0388230:intron | 45.0% | |
| CTTCAAGGGATAAGAGGGTA+TGG | - | chr3_1:92625522-92625541 | Msa0388230:intron | 45.0% | |
| ! | GTAGATTTATGTGCTGCTCC+AGG | - | chr3_1:92625940-92625959 | Msa0388230:intron | 45.0% |
| CGTAATGTCAATGAGGGGAT+TGG | - | chr3_1:92626094-92626113 | Msa0388230:intron | 45.0% | |
| GGGGAACTAACATTCTGTAC+TGG | + | chr3_1:92626486-92626505 | None:intergenic | 45.0% | |
| ! | AATGAAAACTTTGGGGGCTG+GGG | + | chr3_1:92626512-92626531 | None:intergenic | 45.0% |
| ATGGGTCGTATACTATGACC+AGG | + | chr3_1:92626658-92626677 | None:intergenic | 45.0% | |
| GAAGAAGCCATGAACTTAGG+AGG | + | chr3_1:92625214-92625233 | None:intergenic | 45.0% | |
| AGAATCTCGTACAGTGTACG+AGG | + | chr3_1:92625242-92625261 | None:intergenic | 45.0% | |
| CCTGGAGTGCATATCAACAT+AGG | + | chr3_1:92625384-92625403 | None:intergenic | 45.0% | |
| CCTATGTTGATATGCACTCC+AGG | - | chr3_1:92625381-92625400 | Msa0388230:intron | 45.0% | |
| AAACCATGGGCAAAGCTTCA+AGG | - | chr3_1:92625507-92625526 | Msa0388230:intron | 45.0% | |
| AACCATGGGCAAAGCTTCAA+GGG | - | chr3_1:92625508-92625527 | Msa0388230:intron | 45.0% | |
| GCAAAGCTTCAAGGGATAAG+AGG | - | chr3_1:92625516-92625535 | Msa0388230:intron | 45.0% | |
| CTTCAAGGGATAAGAGGGTA+TGG | - | chr3_1:92625522-92625541 | Msa0388230:intron | 45.0% | |
| ! | GTAGATTTATGTGCTGCTCC+AGG | - | chr3_1:92625940-92625959 | Msa0388230:intron | 45.0% |
| CGTAATGTCAATGAGGGGAT+TGG | - | chr3_1:92626094-92626113 | Msa0388230:intron | 45.0% | |
| GGGGAACTAACATTCTGTAC+TGG | + | chr3_1:92626486-92626505 | None:intergenic | 45.0% | |
| ! | AATGAAAACTTTGGGGGCTG+GGG | + | chr3_1:92626512-92626531 | None:intergenic | 45.0% |
| ATGGGTCGTATACTATGACC+AGG | + | chr3_1:92626658-92626677 | None:intergenic | 45.0% | |
| ATCCCTTGAAGCTTTGCCCA+TGG | + | chr3_1:92625513-92625532 | None:intergenic | 50.0% | |
| ! | ATGAAAACTTTGGGGGCTGG+GGG | + | chr3_1:92626511-92626530 | None:intergenic | 50.0% |
| CTTTGCATCAGGTGCAAGCT+TGG | + | chr3_1:92626924-92626943 | None:intergenic | 50.0% | |
| ATCCCTTGAAGCTTTGCCCA+TGG | + | chr3_1:92625513-92625532 | None:intergenic | 50.0% | |
| ! | ATGAAAACTTTGGGGGCTGG+GGG | + | chr3_1:92626511-92626530 | None:intergenic | 50.0% |
| CTTTGCATCAGGTGCAAGCT+TGG | + | chr3_1:92626924-92626943 | None:intergenic | 50.0% | |
| ! | TATGTGCTGCTCCAGGCAGC+TGG | - | chr3_1:92625947-92625966 | Msa0388230:intron | 60.0% |
| AGTACCTGACTCCAGCTGCC+TGG | + | chr3_1:92625961-92625980 | None:intergenic | 60.0% | |
| AGGCAGCTGGAGTCAGGTAC+TGG | - | chr3_1:92625960-92625979 | Msa0388230:intron | 60.0% | |
| ! | AACTTTGGGGGCTGGGGGTA+GGG | + | chr3_1:92626506-92626525 | None:intergenic | 60.0% |
| ! | AAACTTTGGGGGCTGGGGGT+AGG | + | chr3_1:92626507-92626526 | None:intergenic | 60.0% |
| CAGGTGCAAGCTTGGCTGGA+AGG | + | chr3_1:92626916-92626935 | None:intergenic | 60.0% | |
| GCATCAGGTGCAAGCTTGGC+TGG | + | chr3_1:92626920-92626939 | None:intergenic | 60.0% | |
| ! | TATGTGCTGCTCCAGGCAGC+TGG | - | chr3_1:92625947-92625966 | Msa0388230:intron | 60.0% |
| AGTACCTGACTCCAGCTGCC+TGG | + | chr3_1:92625961-92625980 | None:intergenic | 60.0% | |
| AGGCAGCTGGAGTCAGGTAC+TGG | - | chr3_1:92625960-92625979 | Msa0388230:intron | 60.0% | |
| ! | AACTTTGGGGGCTGGGGGTA+GGG | + | chr3_1:92626506-92626525 | None:intergenic | 60.0% |
| ! | AAACTTTGGGGGCTGGGGGT+AGG | + | chr3_1:92626507-92626526 | None:intergenic | 60.0% |
| CAGGTGCAAGCTTGGCTGGA+AGG | + | chr3_1:92626916-92626935 | None:intergenic | 60.0% | |
| GCATCAGGTGCAAGCTTGGC+TGG | + | chr3_1:92626920-92626939 | None:intergenic | 60.0% | |
| TGCTCCAGGCAGCTGGAGTC+AGG | - | chr3_1:92625954-92625973 | Msa0388230:intron | 65.0% | |
| ! | ACTTTGGGGGCTGGGGGTAG+GGG | + | chr3_1:92626505-92626524 | None:intergenic | 65.0% |
| TGCTCCAGGCAGCTGGAGTC+AGG | - | chr3_1:92625954-92625973 | Msa0388230:intron | 65.0% | |
| ! | ACTTTGGGGGCTGGGGGTAG+GGG | + | chr3_1:92626505-92626524 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 92625159 | 92626953 | 92625159 | ID=Msa0388230;Name=Msa0388230 |
| chr3_1 | mRNA | 92625159 | 92626953 | 92625159 | ID=Msa0388230-mRNA-1;Parent=Msa0388230;Name=Msa0388230-mRNA-1;_AED=0.00;_eAED=0.00;_QI=229|1|1|1|0.75|0.8|5|7|74 |
| chr3_1 | exon | 92625159 | 92625219 | 92625159 | ID=Msa0388230-mRNA-1:exon:26054;Parent=Msa0388230-mRNA-1 |
| chr3_1 | exon | 92626137 | 92626186 | 92626137 | ID=Msa0388230-mRNA-1:exon:26053;Parent=Msa0388230-mRNA-1 |
| chr3_1 | exon | 92626393 | 92626486 | 92626393 | ID=Msa0388230-mRNA-1:exon:26052;Parent=Msa0388230-mRNA-1 |
| chr3_1 | exon | 92626574 | 92626622 | 92626574 | ID=Msa0388230-mRNA-1:exon:26051;Parent=Msa0388230-mRNA-1 |
| chr3_1 | exon | 92626747 | 92626953 | 92626747 | ID=Msa0388230-mRNA-1:exon:26050;Parent=Msa0388230-mRNA-1 |
| chr3_1 | five_prime_UTR | 92626747 | 92626953 | 92626747 | ID=Msa0388230-mRNA-1:five_prime_utr;Parent=Msa0388230-mRNA-1 |
| chr3_1 | five_prime_UTR | 92626601 | 92626622 | 92626601 | ID=Msa0388230-mRNA-1:five_prime_utr;Parent=Msa0388230-mRNA-1 |
| chr3_1 | CDS | 92626574 | 92626600 | 92626574 | ID=Msa0388230-mRNA-1:cds;Parent=Msa0388230-mRNA-1 |
| chr3_1 | CDS | 92626393 | 92626486 | 92626393 | ID=Msa0388230-mRNA-1:cds;Parent=Msa0388230-mRNA-1 |
| chr3_1 | CDS | 92626137 | 92626186 | 92626137 | ID=Msa0388230-mRNA-1:cds;Parent=Msa0388230-mRNA-1 |
| chr3_1 | CDS | 92625166 | 92625219 | 92625166 | ID=Msa0388230-mRNA-1:cds;Parent=Msa0388230-mRNA-1 |
| chr3_1 | three_prime_UTR | 92625159 | 92625165 | 92625159 | ID=Msa0388230-mRNA-1:three_prime_utr;Parent=Msa0388230-mRNA-1 |
| Gene Sequence |
| Protein sequence |
