AlfalfaGEDB | Msa0388230

M. sativa cultivar zhongmu-4 / Msa0388230

KEGG: K14864
GO: -
PFAM: PF01728.22

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0388230	PNY16352.1	100.000	74	0	0	1	74	1	74	8.55e-46	152

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0388230	sp\|Q54VA8\|TRM7_DICDI	82.432	74	12	1	1	74	1	73	3.36e-38	130

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0388230	A0A2K3PM41	100.000	74	0	0	1	74	1	74	4.09e-46	152

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0003890	Msa0388230	0.813967	1.957364e-51	-8.615850e-47
Msa0032090	Msa0388230	0.829315	5.514595e-55	-8.615850e-47
Msa0032430	Msa0388230	0.827686	1.364188e-54	-8.615850e-47
Msa0050390	Msa0388230	0.803819	2.906106e-49	-8.615850e-47
Msa0074240	Msa0388230	0.817235	3.663997e-52	-8.615850e-47
Msa0079380	Msa0388230	0.847651	1.010284e-59	-8.615850e-47
Msa0084380	Msa0388230	0.814850	1.248513e-51	-8.615850e-47
Msa0127050	Msa0388230	0.802714	4.920288e-49	-8.615850e-47
Msa0172070	Msa0388230	0.827700	1.353200e-54	-8.615850e-47
Msa0187120	Msa0388230	0.804152	2.477517e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0388230	MtrunA17_Chr2g0282131	100.000	74	0	0	1	74	1	74	8.55e-48	153
Msa0388230	MtrunA17_Chr4g0040381	45.455	66	33	1	1	63	1	66	1.63e-13	63.5

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0388230	AT5G01230.1	91.892	74	6	0	1	74	1	74	2.68e-43	142
Msa0388230	AT5G01230.2	100.000	57	0	0	1	57	1	57	1.88e-37	119
Msa0388230	AT4G25730.1	48.438	64	32	1	1	63	1	64	6.01e-14	65.1

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Find 26 sgRNAs with CRISPR-Local

Find 228 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCATGGGCAAAGCTTCA+AGG	0.459913	3_1:-92626583	Msa0388230:exon
AACCATGGGCAAAGCTTCAA+GGG	0.544253	3_1:-92626582	Msa0388230:exon
AGAATCTCGTACAGTGTACG+AGG	0.708517	3_1:+92626851	None:intergenic
AGTAAGTGAGGAATAAACCA+TGG	0.627845	3_1:-92626597	Msa0388230:exon
AGTACCTGACTCCAGCTGCC+TGG	0.508337	3_1:+92626132	None:intergenic
ATAGTTTGATTCAGGAGAAA+AGG	0.443837	3_1:-92626746	Msa0388230:intron
ATCCCTTGAAGCTTTGCCCA+TGG	0.475121	3_1:+92626580	None:intergenic
ATTGAAGAAGCCATGAACTT+AGG	0.519813	3_1:+92626876	None:intergenic
ATTTAATTTGCATCATAAAC+CGG	0.346350	3_1:+92626931	None:intergenic
CAAAGCTTCAAGGGATAAGA+GGG	0.579751	3_1:-92626573	Msa0388230:intron

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TAGAACACAAAAACGAATAC+AGG	+	chr3_1:92625295-92625314	None:intergenic	30.0%
TGTGATTCTGTGAAATTTGT+TGG	-	chr3_1:92625321-92625340	Msa0388230:intron	30.0%
TTTGTTGGATAGTTTGATTC+AGG	-	chr3_1:92625336-92625355	Msa0388230:intron	30.0%
ATAGTTTGATTCAGGAGAAA+AGG	-	chr3_1:92625344-92625363	Msa0388230:intron	30.0%
AGAGATAGTAGTTAATGTCT+CGG	-	chr3_1:92625829-92625848	Msa0388230:intron	30.0%
CAATTACCAAACACAAACTA+TGG	-	chr3_1:92626040-92626059	Msa0388230:intron	30.0%
ATCTTGGTTTAGATTTCTTC+TGG	-	chr3_1:92626153-92626172	Msa0388230:CDS	30.0%
AAGATAAGTTTAAGAGGAAG+GGG	+	chr3_1:92626256-92626275	None:intergenic	30.0%
TAACTGATATCACAACACAA+AGG	+	chr3_1:92626301-92626320	None:intergenic	30.0%
GGATTTGAATTTAAACCTAG+AGG	-	chr3_1:92626390-92626409	Msa0388230:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_1	gene	92625159	92626953	92625159	ID=Msa0388230;Name=Msa0388230
chr3_1	mRNA	92625159	92626953	92625159	ID=Msa0388230-mRNA-1;Parent=Msa0388230;Name=Msa0388230-mRNA-1;_AED=0.00;_eAED=0.00;_QI=229\|1\|1\|1\|0.75\|0.8\|5\|7\|74
chr3_1	exon	92625159	92625219	92625159	ID=Msa0388230-mRNA-1:exon:26054;Parent=Msa0388230-mRNA-1
chr3_1	exon	92626137	92626186	92626137	ID=Msa0388230-mRNA-1:exon:26053;Parent=Msa0388230-mRNA-1
chr3_1	exon	92626393	92626486	92626393	ID=Msa0388230-mRNA-1:exon:26052;Parent=Msa0388230-mRNA-1
chr3_1	exon	92626574	92626622	92626574	ID=Msa0388230-mRNA-1:exon:26051;Parent=Msa0388230-mRNA-1
chr3_1	exon	92626747	92626953	92626747	ID=Msa0388230-mRNA-1:exon:26050;Parent=Msa0388230-mRNA-1
chr3_1	five_prime_UTR	92626747	92626953	92626747	ID=Msa0388230-mRNA-1:five_prime_utr;Parent=Msa0388230-mRNA-1
chr3_1	five_prime_UTR	92626601	92626622	92626601	ID=Msa0388230-mRNA-1:five_prime_utr;Parent=Msa0388230-mRNA-1
chr3_1	CDS	92626574	92626600	92626574	ID=Msa0388230-mRNA-1:cds;Parent=Msa0388230-mRNA-1
chr3_1	CDS	92626393	92626486	92626393	ID=Msa0388230-mRNA-1:cds;Parent=Msa0388230-mRNA-1
chr3_1	CDS	92626137	92626186	92626137	ID=Msa0388230-mRNA-1:cds;Parent=Msa0388230-mRNA-1
chr3_1	CDS	92625166	92625219	92625166	ID=Msa0388230-mRNA-1:cds;Parent=Msa0388230-mRNA-1
chr3_1	three_prime_UTR	92625159	92625165	92625159	ID=Msa0388230-mRNA-1:three_prime_utr;Parent=Msa0388230-mRNA-1

Gene Sequence	>Msa0388230 ATGGGCAAAGCTTCAAGGGATAAGAGGGATATATATTACCGAAAAGCGAAAGAAGAAGGTTGGCGTGCTCGAAGTGCTTTTAAACTTCTTCAGATAGATGAAGAATTTAACATTTTTGAAGGGGTGAAACGTGTTGTAGATTTATGTGCTGCTCCAGGCAGCTGGAGTCAGGTTTTGAGTCGTAAACTGTACCTTCCAGCCAAGCTTGCACCTGATGCAAAGTAA
Protein sequence	>Msa0388230 MGKASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLAPDAK*