AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0899980


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0899980 MtrunA17_Chr6g0485881 94.826 831 43 0 1 831 1 831 0.0 1603
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0899980 AT3G24630.1 41.463 205 102 7 1 198 10 203 3.57e-27 118
Msa0899980 AT3G24630.2 41.463 205 102 7 1 198 10 203 3.57e-27 118

Find 161 sgRNAs with CRISPR-Local

Find 244 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTAGTGTCTTCTCTCTTTC+TGG 0.005612 6_1:-95389121 None:intergenic
TTCTGAGACTAAACTTATTT+TGG 0.076991 6_1:+95391006 Msa0899980:CDS
GAAACTTCTCAAAATCTTTC+TGG 0.098907 6_1:+95387335 Msa0899980:five_prime_UTR
ATCCAATACAAGACTCTATT+TGG 0.158315 6_1:+95390817 Msa0899980:CDS
TCAATCTTTGGTAGGATCTT+AGG 0.207375 6_1:-95390782 None:intergenic
TTCAAGATTGCAAATCTCTT+TGG 0.228602 6_1:+95390925 Msa0899980:CDS
GGAACTTAAGAAAGTGATTA+AGG 0.234384 6_1:+95388766 Msa0899980:CDS
ATTGCAAAGGATTTGTTAAA+AGG 0.236779 6_1:+95388539 Msa0899980:CDS
TTTGAACACAATTCAGCTTA+TGG 0.266042 6_1:+95388722 Msa0899980:CDS
ATTCCATTAGTTTCAATCTT+TGG 0.272555 6_1:-95390794 None:intergenic
GAAAGTGATTAAGGAGAGTT+TGG 0.281612 6_1:+95388775 Msa0899980:CDS
GCAAATCTCTTTGGGAAGTT+TGG 0.283823 6_1:+95390934 Msa0899980:CDS
CCACACTCAACAACTCCTTT+TGG 0.288999 6_1:-95388272 None:intergenic
CCCTACACAAGTTAGCAATA+AGG 0.311630 6_1:-95390900 None:intergenic
GCAAGAAGCTTCGAATAGTA+TGG 0.317136 6_1:+95388604 Msa0899980:CDS
TTCACCTTGTATATATAATA+AGG 0.318783 6_1:+95391455 Msa0899980:three_prime_UTR
CTTCAGAAGTGCTTGTGCTT+TGG 0.319474 6_1:-95388814 None:intergenic
TGCAACAATAGGTTGATAAA+TGG 0.321009 6_1:+95391064 Msa0899980:CDS
CATCATCAACTGAAGAATTC+TGG 0.321444 6_1:-95390523 None:intergenic
TCTATGACAGAATATTTCTA+AGG 0.322183 6_1:+95388211 Msa0899980:intron
CCTACACAAGTTAGCAATAA+GGG 0.324395 6_1:-95390899 None:intergenic
ACAATAGGTTTAGCTGCTTC+AGG 0.328588 6_1:-95389877 None:intergenic
GATTGACTTGAGCTTGTAGA+AGG 0.330319 6_1:-95388863 None:intergenic
GGTGAAGATGCTGATATCTA+AGG 0.331132 6_1:-95391438 None:intergenic
TGAACCTTCCCTTGGTTTGA+AGG 0.332725 6_1:-95389389 None:intergenic
CAAGTCAATCTTCTGTTGTT+TGG 0.332774 6_1:+95388876 Msa0899980:CDS
GAGTTTCTCAATCTTGATAT+TGG 0.338989 6_1:+95390755 Msa0899980:CDS
CGAAGCCTGTGCTCTCTAAT+AGG 0.344717 6_1:-95389190 None:intergenic
AAACTTCTCAAAATCTTTCT+GGG 0.351606 6_1:+95387336 Msa0899980:five_prime_UTR
GATGAAATGCTCTTTCTAGA+TGG 0.352127 6_1:-95389754 None:intergenic
AGCTCAGAAGTGTCTTTGTC+TGG 0.357390 6_1:-95390686 None:intergenic
GTGTCACACAAAGTGGAAAA+TGG 0.360166 6_1:-95386976 None:intergenic
CTACCAAAGATTGAAACTAA+TGG 0.362800 6_1:+95390791 Msa0899980:CDS
GGATATACAGCCCTTAGTTA+TGG 0.365845 6_1:+95391226 Msa0899980:three_prime_UTR
TCAAGATTGCAAATCTCTTT+GGG 0.367770 6_1:+95390926 Msa0899980:CDS
CTCAAGATCAAGGCGAAATC+AGG 0.377524 6_1:+95389671 Msa0899980:CDS
CTTGAAACTACTCATTTCAA+TGG 0.383813 6_1:+95389151 Msa0899980:CDS
TCCATCTTCTTTGCAGCTTG+TGG 0.385624 6_1:+95388433 Msa0899980:CDS
CTTACATGATCTTGTCCTCT+TGG 0.386518 6_1:-95388078 None:intergenic
GTCTTTGTCTGGCTCGAAAT+CGG 0.387248 6_1:-95390675 None:intergenic
TTGTTGAGTGTGGAAGTATA+AGG 0.388074 6_1:+95388282 Msa0899980:CDS
CAATCTTGTTGCAAGGTTGA+TGG 0.390483 6_1:+95388958 Msa0899980:CDS
ACAGCCCTTAGTTATGGATC+TGG 0.405068 6_1:+95391232 Msa0899980:three_prime_UTR
GAAGAAATTCAGATCCAAAT+GGG 0.416339 6_1:-95387294 None:intergenic
CACAAGCACTTCTGAAGGAT+TGG 0.417407 6_1:+95388820 Msa0899980:CDS
ATGGTCAATAAATGATTTGC+TGG 0.418671 6_1:-95390726 None:intergenic
GTGGAAGTATAAGGAGATAT+AGG 0.425735 6_1:+95388291 Msa0899980:CDS
GAAAACTCTTCTCGAGGAAC+CGG 0.426957 6_1:-95389328 None:intergenic
GAACTATGCTTTCTTACCTT+CGG 0.429427 6_1:-95389085 None:intergenic
ACAGCAAGTGATGGTGTGTT+TGG 0.433244 6_1:-95387191 None:intergenic
GAGATATGAAGTGCAACAAT+AGG 0.438346 6_1:+95391053 Msa0899980:CDS
TGTTTGGTATGACAAACTTT+CGG 0.440918 6_1:+95388892 Msa0899980:CDS
ATCCAAATAGAGTCTTGTAT+TGG 0.447170 6_1:-95390819 None:intergenic
AGAAGAAATTCAGATCCAAA+TGG 0.448197 6_1:-95387295 None:intergenic
TCAATCCTCGACACACTTCG+CGG 0.449222 6_1:-95389718 None:intergenic
CAAGAAGAAGGAATGAGTTT+CGG 0.458989 6_1:+95390043 Msa0899980:CDS
TTTAGAAATCCAAAAGCAAA+AGG 0.462194 6_1:+95389352 Msa0899980:CDS
CAGAAAGAGAGAAGACACTA+AGG 0.462255 6_1:+95389122 Msa0899980:CDS
AATTGTAATGTTCTTTACCT+TGG 0.464078 6_1:-95389596 None:intergenic
ACAGATGGAAATGTTCTTGA+AGG 0.464421 6_1:-95388995 None:intergenic
TTGGTAGTTGAACCTTCCCT+TGG 0.465370 6_1:-95389397 None:intergenic
AATCTTGTTGCAAGGTTGAT+GGG 0.467441 6_1:+95388959 Msa0899980:CDS
GGATCATCACATGTCACAAA+TGG 0.467560 6_1:-95388251 None:intergenic
GGATAATATTTGTGCAATGT+TGG 0.470489 6_1:+95391027 Msa0899980:CDS
CATCAACCTTGCAACAAGAT+TGG 0.470581 6_1:-95388957 None:intergenic
CCCTTATTGCTAACTTGTGT+AGG 0.479938 6_1:+95390899 Msa0899980:CDS
CAAATCCTTTGCAATATCAT+CGG 0.484517 6_1:-95388531 None:intergenic
CTAACTGTGATGACTCTTGA+AGG 0.485315 6_1:-95390871 None:intergenic
ATTGATGCAAATGTGAATGA+TGG 0.489421 6_1:+95388671 Msa0899980:CDS
CAACATGAGAAAAGAGATGA+TGG 0.491361 6_1:+95389417 Msa0899980:CDS
GTCAAATTCTCACAAAATGA+AGG 0.492656 6_1:+95388313 Msa0899980:CDS
AAAGAAGAGAAGGTATCAAA+AGG 0.495584 6_1:+95388389 Msa0899980:CDS
TCCACAAGCTGCAAAGAAGA+TGG 0.500641 6_1:-95388434 None:intergenic
CCGATCAAGATCGGAAGGAC+TGG 0.502887 6_1:-95391363 None:intergenic
ATCTTCTTTGCAGCTTGTGG+AGG 0.504745 6_1:+95388436 Msa0899980:CDS
AACACAACATCATTTGTACT+TGG 0.505310 6_1:+95387075 Msa0899980:five_prime_UTR
TGCACGTAGTCAGCCACATC+AGG 0.507609 6_1:-95391391 None:intergenic
ACAACCCAGATCCATAACTA+AGG 0.507724 6_1:-95391237 None:intergenic
CAGCCCTTAGTTATGGATCT+GGG 0.510574 6_1:+95391233 Msa0899980:three_prime_UTR
CCTTATTGCTAACTTGTGTA+GGG 0.510663 6_1:+95390900 Msa0899980:CDS
CATTAGTTTCAATCTTTGGT+AGG 0.513835 6_1:-95390790 None:intergenic
ATGGAATGTGGAACTGTGGT+TGG 0.517006 6_1:+95391083 Msa0899980:CDS
CACAAAACCAAAGACACAAA+AGG 0.518586 6_1:+95389795 Msa0899980:CDS
CTGATTAGACTGTTTAGATG+TGG 0.518894 6_1:-95391284 None:intergenic
CGAGGTTTCATGAGTACAAT+CGG 0.522887 6_1:-95389268 None:intergenic
TCTCAGAAAACCGATACAAA+AGG 0.524589 6_1:+95389618 Msa0899980:CDS
ACCTCTAGTCTTATTTGCAT+AGG 0.528727 6_1:-95390149 None:intergenic
GAAAGTACAGATTTGAAGAT+CGG 0.534078 6_1:+95391306 Msa0899980:three_prime_UTR
TAGTCCTTATTATATATACA+AGG 0.535662 6_1:-95391459 None:intergenic
GTGGCAAAAGCTCAAGATCA+AGG 0.536217 6_1:+95389661 Msa0899980:CDS
TGAGACAATGAAATCTATGA+AGG 0.536852 6_1:-95387138 None:intergenic
TAAGACAAAGAGCCGAAAGC+CGG 0.536947 6_1:+95388337 Msa0899980:CDS
GTAGTCCTATTAGAGAGCAC+AGG 0.539680 6_1:+95389185 Msa0899980:CDS
TTTGCAGATAATTGCGAGGA+GGG 0.540057 6_1:+95390500 Msa0899980:intron
TGGAACTGTGGTTGGAGGCA+TGG 0.542412 6_1:+95391091 Msa0899980:CDS
CAGATGGAAATGTTCTTGAA+GGG 0.547681 6_1:-95388994 None:intergenic
TCCTTCCGATCTTGATCGGA+CGG 0.552448 6_1:+95391367 Msa0899980:three_prime_UTR
CAGCTTGTGGAGGTATCTAG+AGG 0.555974 6_1:+95388446 Msa0899980:CDS
AGGTGTGGTGAGGTGAATGA+AGG 0.556999 6_1:-95387007 None:intergenic
CCAGTCCTTCCGATCTTGAT+CGG 0.559187 6_1:+95391363 Msa0899980:three_prime_UTR
CAAAGCACAAGCACTTCTGA+AGG 0.559925 6_1:+95388815 Msa0899980:CDS
GTCTCTAGAGATGCTTCGTA+AGG 0.563353 6_1:+95388580 Msa0899980:CDS
TATGGATCTGGGTTGTGTGC+GGG 0.564068 6_1:+95391244 Msa0899980:three_prime_UTR
ACGAGCTTCCTCAGCAAGGA+TGG 0.565299 6_1:-95390579 None:intergenic
CAGGACCGTCCGATCAAGAT+CGG 0.569220 6_1:-95391372 None:intergenic
AAAGTACCAATCTTGTTGCA+AGG 0.570805 6_1:+95388951 Msa0899980:CDS
CAACTCTTCTATCCTTCCTG+TGG 0.571879 6_1:-95391491 None:intergenic
TAAACAAGACAAAGAAGAGA+AGG 0.573687 6_1:+95388379 Msa0899980:CDS
GTGAAGATGCTGATATCTAA+GGG 0.579426 6_1:-95391437 None:intergenic
AGATGGAAATGTTCTTGAAG+GGG 0.581235 6_1:-95388993 None:intergenic
CAAGAAGCTTCGAATAGTAT+GGG 0.582027 6_1:+95388605 Msa0899980:CDS
ATGATTGAGTCGTGGTCTAG+AGG 0.582241 6_1:+95388488 Msa0899980:CDS
ATATGATGTGAAAGAAATCA+AGG 0.588240 6_1:+95389504 Msa0899980:CDS
ATTGACTTGAGCTTGTAGAA+GGG 0.591382 6_1:-95388862 None:intergenic
ACAAAAGGTTAACAGTTCAA+AGG 0.591951 6_1:+95389810 Msa0899980:CDS
AAAACCTTCAAACCAAGGGA+AGG 0.592501 6_1:+95389385 Msa0899980:CDS
ATTGCTGACACCGTCTGTAT+CGG 0.594229 6_1:+95390647 Msa0899980:CDS
GAAACAAGTTTCACTGACGC+TGG 0.594603 6_1:-95390609 None:intergenic
TTGATCGGACGGTCCTGATG+TGG 0.597073 6_1:+95391378 Msa0899980:three_prime_UTR
GGTGTGTCAATCTCGAACAC+AGG 0.598187 6_1:-95389064 None:intergenic
CTAAAGGAAAACTCTTCTCG+AGG 0.598786 6_1:-95389334 None:intergenic
AGAGACAGTGTCACACAAAG+TGG 0.600354 6_1:-95386983 None:intergenic
ATAGGTTGATAAATGGAATG+TGG 0.600587 6_1:+95391071 Msa0899980:CDS
ACCGTCCGATCAAGATCGGA+AGG 0.601177 6_1:-95391368 None:intergenic
TCTAGAGGTGTGAGGTACGA+TGG 0.603601 6_1:+95388503 Msa0899980:CDS
TTATGGATCTGGGTTGTGTG+CGG 0.610047 6_1:+95391243 Msa0899980:three_prime_UTR
CTCTTCAAGTAGTTGTAGAG+AGG 0.610288 6_1:+95388745 Msa0899980:CDS
GAATGTGGAACTGTGGTTGG+AGG 0.612560 6_1:+95391086 Msa0899980:CDS
AGAAAGAGAGAAGACACTAA+GGG 0.612920 6_1:+95389123 Msa0899980:CDS
GATTGAGAAACTCATCTGCA+TGG 0.613355 6_1:-95390745 None:intergenic
CAACCCAGATCCATAACTAA+GGG 0.615587 6_1:-95391236 None:intergenic
AAAATCCGATGATATTGCAA+AGG 0.617942 6_1:+95388526 Msa0899980:CDS
CAAGGCTGTTGAAAGCAAGA+AGG 0.619477 6_1:+95389522 Msa0899980:CDS
TCGATTGAAGAGAAGACAAG+AGG 0.624969 6_1:+95388628 Msa0899980:CDS
CAGAAAACCGATACAAAAGG+AGG 0.626337 6_1:+95389621 Msa0899980:CDS
GTGACATGTGATGATCCAAA+AGG 0.628008 6_1:+95388257 Msa0899980:CDS
AAGAAATTCAGATCCAAATG+GGG 0.629451 6_1:-95387293 None:intergenic
CCAAAAGGAGTTGTTGAGTG+TGG 0.631426 6_1:+95388272 Msa0899980:CDS
AGAAATTCAGATCCAAATGG+GGG 0.635002 6_1:-95387292 None:intergenic
ACCTATGCAAATAAGACTAG+AGG 0.635482 6_1:+95390148 Msa0899980:CDS
CTACACAAGTTAGCAATAAG+GGG 0.636387 6_1:-95390898 None:intergenic
GAAAGCCGCGAAGTGTGTCG+AGG 0.637298 6_1:+95389713 Msa0899980:CDS
CGATTGTACTCATGAAACCT+CGG 0.638305 6_1:+95389269 Msa0899980:CDS
AAATGATACCATCCTTGCTG+AGG 0.642227 6_1:+95390571 Msa0899980:CDS
AGGACTAAGAAATTGACCAC+AGG 0.651037 6_1:+95391475 Msa0899980:three_prime_UTR
GGTTTCAAAAGCTAAAATTG+TGG 0.654649 6_1:+95389642 Msa0899980:CDS
TGTCACGAGCTTCCTCAGCA+AGG 0.661150 6_1:-95390583 None:intergenic
ACATACAAAGAGGTGTGGTG+AGG 0.663808 6_1:-95387017 None:intergenic
ATCGGTTTCACCGATACAGA+CGG 0.665581 6_1:-95390657 None:intergenic
ATAAATGGAATGTGGAACTG+TGG 0.666233 6_1:+95391079 Msa0899980:CDS
ATCATGTGAATGAAGTTGCG+TGG 0.666706 6_1:+95386951 Msa0899980:five_prime_UTR
CTAAGAAATTGACCACAGGA+AGG 0.671875 6_1:+95391479 Msa0899980:three_prime_UTR
GACAAAGTGTAAGATCCAAG+AGG 0.685196 6_1:+95388063 Msa0899980:five_prime_UTR
TGAACAACATGATTGAGTCG+TGG 0.687574 6_1:+95388480 Msa0899980:CDS
GAAATTCAGATCCAAATGGG+GGG 0.696483 6_1:-95387291 None:intergenic
TAAGGGATTTGAAACGTGTG+CGG 0.700220 6_1:-95391420 None:intergenic
GTTCGAGATTGACACACCGA+AGG 0.719145 6_1:+95389069 Msa0899980:CDS
AGTCGTGGTCTAGAGGTGTG+AGG 0.724136 6_1:+95388495 Msa0899980:CDS
GGTTTCATGAGTACAATCGG+TGG 0.732087 6_1:-95389265 None:intergenic
ACAAGTTTCACTGACGCTGG+TGG 0.738203 6_1:-95390606 None:intergenic
AGTAACAGAAGATCTCATCG+TGG 0.778770 6_1:+95390111 Msa0899980:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GAAATTTCATAAAATAACTT+AGG - chr6_1:95388193-95388212 None:intergenic 15.0%
!!! TTATATATTTTGAGACATTT+TGG + chr6_1:95391205-95391224 Msa0899980:three_prime_UTR 15.0%
!! AGCTGAAAGAAAAAAAATAA+AGG + chr6_1:95387482-95387501 Msa0899980:five_prime_UTR 20.0%
!! GCTGAAAGAAAAAAAATAAA+GGG + chr6_1:95387483-95387502 Msa0899980:five_prime_UTR 20.0%
!!! TTTTGGTTTCATCAATTTTA+AGG + chr6_1:95387585-95387604 Msa0899980:intron 20.0%
!!! CTTTTTGTTTGTTTCTTTAT+AGG + chr6_1:95387951-95387970 Msa0899980:intron 20.0%
!! ATAGAGACTGATTAATATAA+TGG + chr6_1:95387995-95388014 Msa0899980:intron 20.0%
!!! TCATTTTTTTTTTGTCTCTA+TGG + chr6_1:95389911-95389930 Msa0899980:intron 20.0%
!!! TAAATTTCTAAAATTGTCAC+TGG + chr6_1:95390171-95390190 Msa0899980:intron 20.0%
!! TTATACTATTTATCCAAACA+GGG - chr6_1:95390208-95390227 None:intergenic 20.0%
!! ATTATACTATTTATCCAAAC+AGG - chr6_1:95390209-95390228 None:intergenic 20.0%
!! CATATAAGTTCTTATGTATA+TGG + chr6_1:95390255-95390274 Msa0899980:intron 20.0%
!! TTCACCTTGTATATATAATA+AGG + chr6_1:95391455-95391474 Msa0899980:three_prime_UTR 20.0%
!! TAGTCCTTATTATATATACA+AGG - chr6_1:95391462-95391481 None:intergenic 20.0%
! TGAAAAATGGGCAAAAAAAT+GGG - chr6_1:95387108-95387127 None:intergenic 25.0%
! GGATTATGAAAGTGAAAAAT+GGG - chr6_1:95387120-95387139 None:intergenic 25.0%
! AGGATTATGAAAGTGAAAAA+TGG - chr6_1:95387121-95387140 None:intergenic 25.0%
! AAACTTCTCAAAATCTTTCT+GGG + chr6_1:95387336-95387355 Msa0899980:five_prime_UTR 25.0%
!! TTTTTCATGAATTTCTCAAG+TGG + chr6_1:95387408-95387427 Msa0899980:five_prime_UTR 25.0%
!! TTTTCATGAATTTCTCAAGT+GGG + chr6_1:95387409-95387428 Msa0899980:five_prime_UTR 25.0%
!! GCTTCTTTTTATGTGATTTT+TGG + chr6_1:95387539-95387558 Msa0899980:intron 25.0%
! CCAAAAACACACTTAAAAAA+TGG - chr6_1:95387571-95387590 None:intergenic 25.0%
!!! CCATTTTTTAAGTGTGTTTT+TGG + chr6_1:95387568-95387587 Msa0899980:intron 25.0%
!! ATCAGTTTTTGACGAATATT+AGG + chr6_1:95387658-95387677 Msa0899980:intron 25.0%
!! TTTGTTTGTTTCTTTATAGG+TGG + chr6_1:95387954-95387973 Msa0899980:intron 25.0%
!! TTGTTTGTTTCTTTATAGGT+GGG + chr6_1:95387955-95387974 Msa0899980:intron 25.0%
!!! TATAATGGTTTTTGTTTCAG+TGG + chr6_1:95388010-95388029 Msa0899980:intron 25.0%
!!! ATAATGGTTTTTGTTTCAGT+GGG + chr6_1:95388011-95388030 Msa0899980:intron 25.0%
!! TCTATGACAGAATATTTCTA+AGG + chr6_1:95388211-95388230 Msa0899980:intron 25.0%
!!! ATTGCAAAGGATTTGTTAAA+AGG + chr6_1:95388539-95388558 Msa0899980:CDS 25.0%
!!! TTTTGCTTTTGGATTTCTAA+AGG - chr6_1:95389353-95389372 None:intergenic 25.0%
! TTTAGAAATCCAAAAGCAAA+AGG + chr6_1:95389352-95389371 Msa0899980:CDS 25.0%
! ATCCAAAAAGTTTATCAAAG+AGG + chr6_1:95389450-95389469 Msa0899980:CDS 25.0%
! ATATGATGTGAAAGAAATCA+AGG + chr6_1:95389504-95389523 Msa0899980:CDS 25.0%
! AATTGTAATGTTCTTTACCT+TGG - chr6_1:95389599-95389618 None:intergenic 25.0%
! ATGACAGTAAAACTTACAAT+AGG - chr6_1:95389895-95389914 None:intergenic 25.0%
! TATCTTGCATAAAAGAGTTT+AGG + chr6_1:95389960-95389979 Msa0899980:intron 25.0%
! AATGAATTGAAACTCATTGA+AGG - chr6_1:95389994-95390013 None:intergenic 25.0%
! GAAAAATTAAAGCAAGAAGA+AGG + chr6_1:95390031-95390050 Msa0899980:CDS 25.0%
! TGCTTCTAATAATCTAACAA+GGG - chr6_1:95390428-95390447 None:intergenic 25.0%
! TATCATCACACTGAATAAAT+TGG + chr6_1:95390452-95390471 Msa0899980:intron 25.0%
!! ATTCCATTAGTTTCAATCTT+TGG - chr6_1:95390797-95390816 None:intergenic 25.0%
!!! TTCTGAGACTAAACTTATTT+TGG + chr6_1:95391006-95391025 Msa0899980:CDS 25.0%
!! GAAGTAGAAAACATGATTTT+AGG + chr6_1:95391148-95391167 Msa0899980:CDS 25.0%
AAAAAACATACAAAGAGGTG+TGG - chr6_1:95387025-95387044 None:intergenic 30.0%
!!! ACACCTCTTTGTATGTTTTT+TGG + chr6_1:95387024-95387043 Msa0899980:five_prime_UTR 30.0%
GTTCCAAAAAACATACAAAG+AGG - chr6_1:95387030-95387049 None:intergenic 30.0%
AACACAACATCATTTGTACT+TGG + chr6_1:95387075-95387094 Msa0899980:five_prime_UTR 30.0%
GTGAAAAATGGGCAAAAAAA+TGG - chr6_1:95387109-95387128 None:intergenic 30.0%
TGAGACAATGAAATCTATGA+AGG - chr6_1:95387141-95387160 None:intergenic 30.0%
CTTAAAAAAACAGCAAGTGA+TGG - chr6_1:95387203-95387222 None:intergenic 30.0%
AAGAAATTCAGATCCAAATG+GGG - chr6_1:95387296-95387315 None:intergenic 30.0%
GAAGAAATTCAGATCCAAAT+GGG - chr6_1:95387297-95387316 None:intergenic 30.0%
AGAAGAAATTCAGATCCAAA+TGG - chr6_1:95387298-95387317 None:intergenic 30.0%
GAAACTTCTCAAAATCTTTC+TGG + chr6_1:95387335-95387354 Msa0899980:five_prime_UTR 30.0%
!! TGCTGCTTTAAGAATCTATT+TGG + chr6_1:95387763-95387782 Msa0899980:intron 30.0%
GTCAAATTCTCACAAAATGA+AGG + chr6_1:95388313-95388332 Msa0899980:CDS 30.0%
! TTTGTCTCTAAATTTTCAGC+CGG - chr6_1:95388359-95388378 None:intergenic 30.0%
TAAACAAGACAAAGAAGAGA+AGG + chr6_1:95388379-95388398 Msa0899980:CDS 30.0%
!! AAAGAAGAGAAGGTATCAAA+AGG + chr6_1:95388389-95388408 Msa0899980:CDS 30.0%
AAAATCCGATGATATTGCAA+AGG + chr6_1:95388526-95388545 Msa0899980:CDS 30.0%
CAAATCCTTTGCAATATCAT+CGG - chr6_1:95388534-95388553 None:intergenic 30.0%
ATTGATGCAAATGTGAATGA+TGG + chr6_1:95388671-95388690 Msa0899980:CDS 30.0%
TTTGAACACAATTCAGCTTA+TGG + chr6_1:95388722-95388741 Msa0899980:CDS 30.0%
GGAACTTAAGAAAGTGATTA+AGG + chr6_1:95388766-95388785 Msa0899980:CDS 30.0%
TGTTTGGTATGACAAACTTT+CGG + chr6_1:95388892-95388911 Msa0899980:CDS 30.0%
! TTTTCCTTCCTTGAAAAAGT+TGG - chr6_1:95388932-95388951 None:intergenic 30.0%
ATCTGTTATGCAAAAACAGT+CGG + chr6_1:95389012-95389031 Msa0899980:CDS 30.0%
CTTGAAACTACTCATTTCAA+TGG + chr6_1:95389151-95389170 Msa0899980:CDS 30.0%
TTCAAAAACCTTCAAACCAA+GGG + chr6_1:95389381-95389400 Msa0899980:CDS 30.0%
! CTCCTCTTTGATAAACTTTT+TGG - chr6_1:95389455-95389474 None:intergenic 30.0%
!! TTTGAAACCTCCTTTTGTAT+CGG - chr6_1:95389631-95389650 None:intergenic 30.0%
GGTTTCAAAAGCTAAAATTG+TGG + chr6_1:95389642-95389661 Msa0899980:CDS 30.0%
ACAAAAGGTTAACAGTTCAA+AGG + chr6_1:95389810-95389829 Msa0899980:CDS 30.0%
AATTCATTATTCTTGTGCAC+AGG + chr6_1:95390006-95390025 Msa0899980:intron 30.0%
GTGCTTCTAATAATCTAACA+AGG - chr6_1:95390429-95390448 None:intergenic 30.0%
! ATGGTCAATAAATGATTTGC+TGG - chr6_1:95390729-95390748 None:intergenic 30.0%
GAGTTTCTCAATCTTGATAT+TGG + chr6_1:95390755-95390774 Msa0899980:CDS 30.0%
! CATTAGTTTCAATCTTTGGT+AGG - chr6_1:95390793-95390812 None:intergenic 30.0%
CTACCAAAGATTGAAACTAA+TGG + chr6_1:95390791-95390810 Msa0899980:CDS 30.0%
ATCCAATACAAGACTCTATT+TGG + chr6_1:95390817-95390836 Msa0899980:CDS 30.0%
! ATCCAAATAGAGTCTTGTAT+TGG - chr6_1:95390822-95390841 None:intergenic 30.0%
TTCAAGATTGCAAATCTCTT+TGG + chr6_1:95390925-95390944 Msa0899980:CDS 30.0%
TCAAGATTGCAAATCTCTTT+GGG + chr6_1:95390926-95390945 Msa0899980:CDS 30.0%
GGATAATATTTGTGCAATGT+TGG + chr6_1:95391027-95391046 Msa0899980:CDS 30.0%
!! TGCAACAATAGGTTGATAAA+TGG + chr6_1:95391064-95391083 Msa0899980:CDS 30.0%
!! ATAGGTTGATAAATGGAATG+TGG + chr6_1:95391071-95391090 Msa0899980:CDS 30.0%
! GTAGAAAACATGATTTTAGG+TGG + chr6_1:95391151-95391170 Msa0899980:CDS 30.0%
!!! GATTTTAGGTGGATTAATTG+AGG + chr6_1:95391162-95391181 Msa0899980:CDS 30.0%
! GAAAGTACAGATTTGAAGAT+CGG + chr6_1:95391306-95391325 Msa0899980:three_prime_UTR 30.0%
! AATGGGCAAAAAAATGGGTT+TGG - chr6_1:95387103-95387122 None:intergenic 35.0%
!!! TGATGGTGTGTTTGGTTTTT+TGG - chr6_1:95387186-95387205 None:intergenic 35.0%
GGTGTAGAAATAAAAAGGGA+GGG - chr6_1:95387273-95387292 None:intergenic 35.0%
AGAAATTCAGATCCAAATGG+GGG - chr6_1:95387295-95387314 None:intergenic 35.0%
!!! TTGCTTCTCATGGTTTTTTG+AGG + chr6_1:95387438-95387457 Msa0899980:five_prime_UTR 35.0%
!!! TTCTCATGGTTTTTTGAGGT+TGG + chr6_1:95387442-95387461 Msa0899980:five_prime_UTR 35.0%
! TTGTTGAGTGTGGAAGTATA+AGG + chr6_1:95388282-95388301 Msa0899980:CDS 35.0%
! GTGGAAGTATAAGGAGATAT+AGG + chr6_1:95388291-95388310 Msa0899980:CDS 35.0%
CAAGAAGCTTCGAATAGTAT+GGG + chr6_1:95388605-95388624 Msa0899980:CDS 35.0%
GAAAGTGATTAAGGAGAGTT+TGG + chr6_1:95388775-95388794 Msa0899980:CDS 35.0%
!! ATTGACTTGAGCTTGTAGAA+GGG - chr6_1:95388865-95388884 None:intergenic 35.0%
CAAGTCAATCTTCTGTTGTT+TGG + chr6_1:95388876-95388895 Msa0899980:CDS 35.0%
!!! CATGTTCACCAACTTTTTCA+AGG + chr6_1:95388921-95388940 Msa0899980:CDS 35.0%
!!! TTCACCAACTTTTTCAAGGA+AGG + chr6_1:95388925-95388944 Msa0899980:CDS 35.0%
! AAAGTACCAATCTTGTTGCA+AGG + chr6_1:95388951-95388970 Msa0899980:CDS 35.0%
! AATCTTGTTGCAAGGTTGAT+GGG + chr6_1:95388959-95388978 Msa0899980:CDS 35.0%
AGATGGAAATGTTCTTGAAG+GGG - chr6_1:95388996-95389015 None:intergenic 35.0%
CAGATGGAAATGTTCTTGAA+GGG - chr6_1:95388997-95389016 None:intergenic 35.0%
ACAGATGGAAATGTTCTTGA+AGG - chr6_1:95388998-95389017 None:intergenic 35.0%
!!! GACTGTTTTTGCATAACAGA+TGG - chr6_1:95389013-95389032 None:intergenic 35.0%
GAACTATGCTTTCTTACCTT+CGG - chr6_1:95389088-95389107 None:intergenic 35.0%
AGAAAGAGAGAAGACACTAA+GGG + chr6_1:95389123-95389142 Msa0899980:CDS 35.0%
!! CTTGGTTTGAAGGTTTTTGA+AGG - chr6_1:95389382-95389401 None:intergenic 35.0%
CTTCAAAAACCTTCAAACCA+AGG + chr6_1:95389380-95389399 Msa0899980:CDS 35.0%
! CATCATCTCTTTTCTCATGT+TGG - chr6_1:95389419-95389438 None:intergenic 35.0%
CAACATGAGAAAAGAGATGA+TGG + chr6_1:95389417-95389436 Msa0899980:CDS 35.0%
!! AACAGTTGATGAAAAAGCCA+AGG + chr6_1:95389579-95389598 Msa0899980:CDS 35.0%
TCTCAGAAAACCGATACAAA+AGG + chr6_1:95389618-95389637 Msa0899980:CDS 35.0%
GATGAAATGCTCTTTCTAGA+TGG - chr6_1:95389757-95389776 None:intergenic 35.0%
!!! TTGTGTCTTTGGTTTTGTGA+TGG - chr6_1:95389794-95389813 None:intergenic 35.0%
CACAAAACCAAAGACACAAA+AGG + chr6_1:95389795-95389814 Msa0899980:CDS 35.0%
! CTGTTAACCTTTTGTGTCTT+TGG - chr6_1:95389805-95389824 None:intergenic 35.0%
CAAGAAGAAGGAATGAGTTT+CGG + chr6_1:95390043-95390062 Msa0899980:CDS 35.0%
ACCTATGCAAATAAGACTAG+AGG + chr6_1:95390148-95390167 Msa0899980:CDS 35.0%
!! ACCTCTAGTCTTATTTGCAT+AGG - chr6_1:95390152-95390171 None:intergenic 35.0%
AATTGTCACTGGATACACTT+TGG + chr6_1:95390182-95390201 Msa0899980:intron 35.0%
! TAATCTAACAAGGGCATGTT+TGG - chr6_1:95390419-95390438 None:intergenic 35.0%
CATCATCAACTGAAGAATTC+TGG - chr6_1:95390526-95390545 None:intergenic 35.0%
TCAATCTTTGGTAGGATCTT+AGG - chr6_1:95390785-95390804 None:intergenic 35.0%
CTACACAAGTTAGCAATAAG+GGG - chr6_1:95390901-95390920 None:intergenic 35.0%
CCTACACAAGTTAGCAATAA+GGG - chr6_1:95390902-95390921 None:intergenic 35.0%
! CCTTATTGCTAACTTGTGTA+GGG + chr6_1:95390900-95390919 Msa0899980:CDS 35.0%
GAGATATGAAGTGCAACAAT+AGG + chr6_1:95391053-95391072 Msa0899980:CDS 35.0%
ATAAATGGAATGTGGAACTG+TGG + chr6_1:95391079-95391098 Msa0899980:CDS 35.0%
CTGATTAGACTGTTTAGATG+TGG - chr6_1:95391287-95391306 None:intergenic 35.0%
GTGAAGATGCTGATATCTAA+GGG - chr6_1:95391440-95391459 None:intergenic 35.0%
ATCATGTGAATGAAGTTGCG+TGG + chr6_1:95386951-95386970 Msa0899980:five_prime_UTR 40.0%
GTGTCACACAAAGTGGAAAA+TGG - chr6_1:95386979-95386998 None:intergenic 40.0%
GGGTGTAGAAATAAAAAGGG+AGG - chr6_1:95387274-95387293 None:intergenic 40.0%
! GGGGGGTGTAGAAATAAAAA+GGG - chr6_1:95387277-95387296 None:intergenic 40.0%
! TGGGGGGTGTAGAAATAAAA+AGG - chr6_1:95387278-95387297 None:intergenic 40.0%
!! TTATTTCTACACCCCCCATT+TGG + chr6_1:95387280-95387299 Msa0899980:five_prime_UTR 40.0%
GAAATTCAGATCCAAATGGG+GGG - chr6_1:95387294-95387313 None:intergenic 40.0%
!!! TGGGTCATTTTTGCTTCTCA+TGG + chr6_1:95387428-95387447 Msa0899980:five_prime_UTR 40.0%
GCAGCATGCAAAGAAAGAAT+AGG - chr6_1:95387749-95387768 None:intergenic 40.0%
GACAAAGTGTAAGATCCAAG+AGG + chr6_1:95388063-95388082 Msa0899980:five_prime_UTR 40.0%
CTTACATGATCTTGTCCTCT+TGG - chr6_1:95388081-95388100 None:intergenic 40.0%
GGATCATCACATGTCACAAA+TGG - chr6_1:95388254-95388273 None:intergenic 40.0%
GTGACATGTGATGATCCAAA+AGG + chr6_1:95388257-95388276 Msa0899980:CDS 40.0%
!! CTAAATTTTCAGCCGGCTTT+CGG - chr6_1:95388352-95388371 None:intergenic 40.0%
TGAACAACATGATTGAGTCG+TGG + chr6_1:95388480-95388499 Msa0899980:CDS 40.0%
GCAAGAAGCTTCGAATAGTA+TGG + chr6_1:95388604-95388623 Msa0899980:CDS 40.0%
TCGATTGAAGAGAAGACAAG+AGG + chr6_1:95388628-95388647 Msa0899980:CDS 40.0%
CTCTTCAAGTAGTTGTAGAG+AGG + chr6_1:95388745-95388764 Msa0899980:CDS 40.0%
!! GATTGACTTGAGCTTGTAGA+AGG - chr6_1:95388866-95388885 None:intergenic 40.0%
CATCAACCTTGCAACAAGAT+TGG - chr6_1:95388960-95388979 None:intergenic 40.0%
CAATCTTGTTGCAAGGTTGA+TGG + chr6_1:95388958-95388977 Msa0899980:CDS 40.0%
CTTAGTGTCTTCTCTCTTTC+TGG - chr6_1:95389124-95389143 None:intergenic 40.0%
CAGAAAGAGAGAAGACACTA+AGG + chr6_1:95389122-95389141 Msa0899980:CDS 40.0%
CGAGGTTTCATGAGTACAAT+CGG - chr6_1:95389271-95389290 None:intergenic 40.0%
CGATTGTACTCATGAAACCT+CGG + chr6_1:95389269-95389288 Msa0899980:CDS 40.0%
CTAAAGGAAAACTCTTCTCG+AGG - chr6_1:95389337-95389356 None:intergenic 40.0%
! GAAGGAACTCCTTTTGCTTT+TGG - chr6_1:95389364-95389383 None:intergenic 40.0%
AAAACCTTCAAACCAAGGGA+AGG + chr6_1:95389385-95389404 Msa0899980:CDS 40.0%
CAGAAAACCGATACAAAAGG+AGG + chr6_1:95389621-95389640 Msa0899980:CDS 40.0%
ACAATAGGTTTAGCTGCTTC+AGG - chr6_1:95389880-95389899 None:intergenic 40.0%
AGTAACAGAAGATCTCATCG+TGG + chr6_1:95390111-95390130 Msa0899980:CDS 40.0%
GTCGATGAGCATCTCATAAA+CGG + chr6_1:95390350-95390369 Msa0899980:intron 40.0%
CCTCGCAATTATCTGCAAAA+GGG - chr6_1:95390499-95390518 None:intergenic 40.0%
TCCTCGCAATTATCTGCAAA+AGG - chr6_1:95390500-95390519 None:intergenic 40.0%
! TTTTGCAGATAATTGCGAGG+AGG + chr6_1:95390499-95390518 Msa0899980:intron 40.0%
TTTGCAGATAATTGCGAGGA+GGG + chr6_1:95390500-95390519 Msa0899980:intron 40.0%
AAATGATACCATCCTTGCTG+AGG + chr6_1:95390571-95390590 Msa0899980:CDS 40.0%
GATTGAGAAACTCATCTGCA+TGG - chr6_1:95390748-95390767 None:intergenic 40.0%
CTAACTGTGATGACTCTTGA+AGG - chr6_1:95390874-95390893 None:intergenic 40.0%
! CCCTTATTGCTAACTTGTGT+AGG + chr6_1:95390899-95390918 Msa0899980:CDS 40.0%
CCCTACACAAGTTAGCAATA+AGG - chr6_1:95390903-95390922 None:intergenic 40.0%
! GCAAATCTCTTTGGGAAGTT+TGG + chr6_1:95390934-95390953 Msa0899980:CDS 40.0%
GGATATACAGCCCTTAGTTA+TGG + chr6_1:95391226-95391245 Msa0899980:three_prime_UTR 40.0%
CAACCCAGATCCATAACTAA+GGG - chr6_1:95391239-95391258 None:intergenic 40.0%
ACAACCCAGATCCATAACTA+AGG - chr6_1:95391240-95391259 None:intergenic 40.0%
! TAAGGGATTTGAAACGTGTG+CGG - chr6_1:95391423-95391442 None:intergenic 40.0%
GGTGAAGATGCTGATATCTA+AGG - chr6_1:95391441-95391460 None:intergenic 40.0%
AGGACTAAGAAATTGACCAC+AGG + chr6_1:95391475-95391494 Msa0899980:three_prime_UTR 40.0%
CTAAGAAATTGACCACAGGA+AGG + chr6_1:95391479-95391498 Msa0899980:three_prime_UTR 40.0%
AGAGACAGTGTCACACAAAG+TGG - chr6_1:95386986-95387005 None:intergenic 45.0%
! ACATACAAAGAGGTGTGGTG+AGG - chr6_1:95387020-95387039 None:intergenic 45.0%
! ACAGCAAGTGATGGTGTGTT+TGG - chr6_1:95387194-95387213 None:intergenic 45.0%
! CCACACTCAACAACTCCTTT+TGG - chr6_1:95388275-95388294 None:intergenic 45.0%
CCAAAAGGAGTTGTTGAGTG+TGG + chr6_1:95388272-95388291 Msa0899980:CDS 45.0%
TAAGACAAAGAGCCGAAAGC+CGG + chr6_1:95388337-95388356 Msa0899980:CDS 45.0%
TCCATCTTCTTTGCAGCTTG+TGG + chr6_1:95388433-95388452 Msa0899980:CDS 45.0%
TCCACAAGCTGCAAAGAAGA+TGG - chr6_1:95388437-95388456 None:intergenic 45.0%
ATCTTCTTTGCAGCTTGTGG+AGG + chr6_1:95388436-95388455 Msa0899980:CDS 45.0%
ATGATTGAGTCGTGGTCTAG+AGG + chr6_1:95388488-95388507 Msa0899980:CDS 45.0%
! GTCTCTAGAGATGCTTCGTA+AGG + chr6_1:95388580-95388599 Msa0899980:CDS 45.0%
!! CTTCAGAAGTGCTTGTGCTT+TGG - chr6_1:95388817-95388836 None:intergenic 45.0%
CAAAGCACAAGCACTTCTGA+AGG + chr6_1:95388815-95388834 Msa0899980:CDS 45.0%
! CACAAGCACTTCTGAAGGAT+TGG + chr6_1:95388820-95388839 Msa0899980:CDS 45.0%
! GTAGTCCTATTAGAGAGCAC+AGG + chr6_1:95389185-95389204 Msa0899980:CDS 45.0%
GGTTTCATGAGTACAATCGG+TGG - chr6_1:95389268-95389287 None:intergenic 45.0%
GAAAACTCTTCTCGAGGAAC+CGG - chr6_1:95389331-95389350 None:intergenic 45.0%
! TGAACCTTCCCTTGGTTTGA+AGG - chr6_1:95389392-95389411 None:intergenic 45.0%
! TTGGTAGTTGAACCTTCCCT+TGG - chr6_1:95389400-95389419 None:intergenic 45.0%
CAAGGCTGTTGAAAGCAAGA+AGG + chr6_1:95389522-95389541 Msa0899980:CDS 45.0%
GTGGCAAAAGCTCAAGATCA+AGG + chr6_1:95389661-95389680 Msa0899980:CDS 45.0%
CTCAAGATCAAGGCGAAATC+AGG + chr6_1:95389671-95389690 Msa0899980:CDS 45.0%
! CCCTTTTGCAGATAATTGCG+AGG + chr6_1:95390496-95390515 Msa0899980:intron 45.0%
GAAACAAGTTTCACTGACGC+TGG - chr6_1:95390612-95390631 None:intergenic 45.0%
ATTGCTGACACCGTCTGTAT+CGG + chr6_1:95390647-95390666 Msa0899980:CDS 45.0%
! ATCGGTTTCACCGATACAGA+CGG - chr6_1:95390660-95390679 None:intergenic 45.0%
! GTCTTTGTCTGGCTCGAAAT+CGG - chr6_1:95390678-95390697 None:intergenic 45.0%
!! AGCTCAGAAGTGTCTTTGTC+TGG - chr6_1:95390689-95390708 None:intergenic 45.0%
ATGGAATGTGGAACTGTGGT+TGG + chr6_1:95391083-95391102 Msa0899980:CDS 45.0%
ACAGCCCTTAGTTATGGATC+TGG + chr6_1:95391232-95391251 Msa0899980:three_prime_UTR 45.0%
CAGCCCTTAGTTATGGATCT+GGG + chr6_1:95391233-95391252 Msa0899980:three_prime_UTR 45.0%
TTATGGATCTGGGTTGTGTG+CGG + chr6_1:95391243-95391262 Msa0899980:three_prime_UTR 45.0%
AGGTGTGGTGAGGTGAATGA+AGG - chr6_1:95387010-95387029 None:intergenic 50.0%
!! CAGCTTGTGGAGGTATCTAG+AGG + chr6_1:95388446-95388465 Msa0899980:CDS 50.0%
! TCTAGAGGTGTGAGGTACGA+TGG + chr6_1:95388503-95388522 Msa0899980:CDS 50.0%
GGTGTGTCAATCTCGAACAC+AGG - chr6_1:95389067-95389086 None:intergenic 50.0%
GTTCGAGATTGACACACCGA+AGG + chr6_1:95389069-95389088 Msa0899980:CDS 50.0%
CGAAGCCTGTGCTCTCTAAT+AGG - chr6_1:95389193-95389212 None:intergenic 50.0%
GTTCGTAGAAACGTACGAGC+CGG + chr6_1:95389309-95389328 Msa0899980:CDS 50.0%
! GAAGCGCGTCAACGAGTTTT+TGG + chr6_1:95389480-95389499 Msa0899980:CDS 50.0%
TCAATCCTCGACACACTTCG+CGG - chr6_1:95389721-95389740 None:intergenic 50.0%
GGATACACTTTGGCCCTGTT+TGG + chr6_1:95390192-95390211 Msa0899980:intron 50.0%
ACAAGTTTCACTGACGCTGG+TGG - chr6_1:95390609-95390628 None:intergenic 50.0%
GAATGTGGAACTGTGGTTGG+AGG + chr6_1:95391086-95391105 Msa0899980:CDS 50.0%
TATGGATCTGGGTTGTGTGC+GGG + chr6_1:95391244-95391263 Msa0899980:three_prime_UTR 50.0%
CCAGTCCTTCCGATCTTGAT+CGG + chr6_1:95391363-95391382 Msa0899980:three_prime_UTR 50.0%
TCCTTCCGATCTTGATCGGA+CGG + chr6_1:95391367-95391386 Msa0899980:three_prime_UTR 50.0%
! AGTCGTGGTCTAGAGGTGTG+AGG + chr6_1:95388495-95388514 Msa0899980:CDS 55.0%
ACGAGCTTCCTCAGCAAGGA+TGG - chr6_1:95390582-95390601 None:intergenic 55.0%
TGTCACGAGCTTCCTCAGCA+AGG - chr6_1:95390586-95390605 None:intergenic 55.0%
TGGAACTGTGGTTGGAGGCA+TGG + chr6_1:95391091-95391110 Msa0899980:CDS 55.0%
CCGATCAAGATCGGAAGGAC+TGG - chr6_1:95391366-95391385 None:intergenic 55.0%
ACCGTCCGATCAAGATCGGA+AGG - chr6_1:95391371-95391390 None:intergenic 55.0%
CAGGACCGTCCGATCAAGAT+CGG - chr6_1:95391375-95391394 None:intergenic 55.0%
TTGATCGGACGGTCCTGATG+TGG + chr6_1:95391378-95391397 Msa0899980:three_prime_UTR 55.0%
TGCACGTAGTCAGCCACATC+AGG - chr6_1:95391394-95391413 None:intergenic 55.0%
GAAAGCCGCGAAGTGTGTCG+AGG + chr6_1:95389713-95389732 Msa0899980:CDS 60.0%
ACCTCGGCGCGCTTCGTATC+AGG + chr6_1:95389285-95389304 Msa0899980:CDS 65.0%
TCCTGATACGAAGCGCGCCG+AGG - chr6_1:95389289-95389308 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr6_1 gene 95386933 95391508 95386933 ID=Msa0899980;Name=Msa0899980
chr6_1 mRNA 95386933 95391508 95386933 ID=Msa0899980-mRNA-1;Parent=Msa0899980;Name=Msa0899980-mRNA-1;_AED=0.01;_eAED=0.01;_QI=659|1|1|1|0.5|0.4|5|304|831
chr6_1 exon 95386933 95387504 95386933 ID=Msa0899980-mRNA-1:exon:16448;Parent=Msa0899980-mRNA-1
chr6_1 exon 95388030 95388095 95388030 ID=Msa0899980-mRNA-1:exon:16449;Parent=Msa0899980-mRNA-1
chr6_1 exon 95388221 95389897 95388221 ID=Msa0899980-mRNA-1:exon:16450;Parent=Msa0899980-mRNA-1
chr6_1 exon 95390028 95390169 95390028 ID=Msa0899980-mRNA-1:exon:16451;Parent=Msa0899980-mRNA-1
chr6_1 exon 95390507 95391508 95390507 ID=Msa0899980-mRNA-1:exon:16452;Parent=Msa0899980-mRNA-1
chr6_1 five_prime_UTR 95386933 95387504 95386933 ID=Msa0899980-mRNA-1:five_prime_utr;Parent=Msa0899980-mRNA-1
chr6_1 five_prime_UTR 95388030 95388095 95388030 ID=Msa0899980-mRNA-1:five_prime_utr;Parent=Msa0899980-mRNA-1
chr6_1 five_prime_UTR 95388221 95388241 95388221 ID=Msa0899980-mRNA-1:five_prime_utr;Parent=Msa0899980-mRNA-1
chr6_1 CDS 95388242 95389897 95388242 ID=Msa0899980-mRNA-1:cds;Parent=Msa0899980-mRNA-1
chr6_1 CDS 95390028 95390169 95390028 ID=Msa0899980-mRNA-1:cds;Parent=Msa0899980-mRNA-1
chr6_1 CDS 95390507 95391204 95390507 ID=Msa0899980-mRNA-1:cds;Parent=Msa0899980-mRNA-1
chr6_1 three_prime_UTR 95391205 95391508 95391205 ID=Msa0899980-mRNA-1:three_prime_utr;Parent=Msa0899980-mRNA-1
Gene Sequence

>Msa0899980

ATGTATAAACCATTTGTGACATGTGATGATCCAAAAGGAGTTGTTGAGTGTGGAAGTATAAGGAGATATAGGTCAAATTCTCACAAAATGAAGGATAAGACAAAGAGCCGAAAGCCGGCTGAAAATTTAGAGACAAATAAACAAGACAAAGAAGAGAAGGTATCAAAAGGTTCGACAGAAAGAGATTTTGATCCATCTTCTTTGCAGCTTGTGGAGGTATCTAGAGGTGCTGCAAAGTTGAACAACATGATTGAGTCGTGGTCTAGAGGTGTGAGGTACGATGGAAAATCCGATGATATTGCAAAGGATTTGTTAAAAGGCGCTCTTGATTTGCAAGAGTCTCTAGAGATGCTTCGTAAGGTGCAAGAAGCTTCGAATAGTATGGGTCGATTGAAGAGAAGACAAGAGGAGAAACATGAAAGAAGTAAAATTGATGCAAATGTGAATGATGGAAATAGATCAACACATTCTAATCAATTTTTTGAACACAATTCAGCTTATGGCTCTTCAAGTAGTTGTAGAGAGGAACTTAAGAAAGTGATTAAGGAGAGTTTGGTTCGACAAAATCTATTCCAAAGCACAAGCACTTCTGAAGGATTGGATTCAGCTTCAGCAGCATTCCCTTCTACAAGCTCAAGTCAATCTTCTGTTGTTTGGTATGACAAACTTTCGGATTCTTCATGTTCACCAACTTTTTCAAGGAAGGAAAAAAGTACCAATCTTGTTGCAAGGTTGATGGGATTAGAACAATCCCCTTCAAGAACATTTCCATCTGTTATGCAAAAACAGTCGGAGAATCAAAAGATTGTGAATCAGAAGAGACCTGTGTTCGAGATTGACACACCGAAGGTAAGAAAGCATAGTTCAATATTTGAGAATCCAGAAAGAGAGAAGACACTAAGGGAAATTCTTGAAACTACTCATTTCAATGGATTGTTAAAGAGTAGTCCTATTAGAGAGCACAGGCTTCGTAATCATGTCAATCATTCAAATGATCTTCATTATGAACAGTTTGATGATTTACCACCGATTGTACTCATGAAACCTCGGCGCGCTTCGTATCAGGAGTTCGTAGAAACGTACGAGCCGGTTCCTCGAGAAGAGTTTTCCTTTAGAAATCCAAAAGCAAAAGGAGTTCCTTCAAAAACCTTCAAACCAAGGGAAGGTTCAACTACCAACATGAGAAAAGAGATGATGGAAGAAAATCTATCCAAAAAGTTTATCAAAGAGGAGAGATCGAAGCGCGTCAACGAGTTTTTGGAATATGATGTGAAAGAAATCAAGGCTGTTGAAAGCAAGAAGGTTCAAAAAGCTAGTCATAGATCACAAGCAAGTGAAACAGTTGATGAAAAAGCCAAGGTAAAGAACATTACAATTCTCAGAAAACCGATACAAAAGGAGGTTTCAAAAGCTAAAATTGTGGCAAAAGCTCAAGATCAAGGCGAAATCAGGTCTAGTAGTGAAAAGTTGAGAAAGCCGCGAAGTGTGTCGAGGATTGAGAAGAATGAGATTCCATCTAGAAAGAGCATTTCATCAAATTCAAATACTACCATCACAAAACCAAAGACACAAAAGGTTAACAGTTCAAAGGAATTGAGAAAGAGTCAGATGAAGAAGCAAATATCTGTTGATTTGCCTGAAGCAGCTAAACCTATTGATGAAAAATTAAAGCAAGAAGAAGGAATGAGTTTCGGTGTTTCTTGTAAAGATGATTGTGCTGAGATTAAAATAATCACTACAGTAACAGAAGATCTCATCGTGGAAGATGAAGTAGACACCTATGCAAATAAGACTAGAGATAATTGCGAGGAGGGCCAGAATTCTTCAGTTGATGATGTTTTGATGTTAAATTGTGAGCATGAAAATGATACCATCCTTGCTGAGGAAGCTCGTGACACCACCAGCGTCAGTGAAACTTGTTTCAATCAAGACAAAGACATTGCTGACACCGTCTGTATCGGTGAAACCGATTTCGAGCCAGACAAAGACACTTCTGAGCTGAAATATTTGCTTCTAACCAGCAAATCATTTATTGACCATGCAGATGAGTTTCTCAATCTTGATATTGGTTATCCTAAGATCCTACCAAAGATTGAAACTAATGGAATATCCAATACAAGACTCTATTTGGATTGCGCGAACGAACTCGCTGAGAGAAAAAGCCTTCAAGAGTCATCACAGTTAGTTCACCCCTTATTGCTAACTTGTGTAGGGAATTCAAGATTGCAAATCTCTTTGGGAAGTTTGGTTGAAGAAATCAACAATGCAATTGACAGTCTTACATCTTACAGTGAAAATTCTGAGACTAAACTTATTTTGGATAATATTTGTGCAATGTTGGAGAGAGATATGAAGTGCAACAATAGGTTGATAAATGGAATGTGGAACTGTGGTTGGAGGCATGGATTTTCTTGTGATGAAGCTGAACAAGCTGTTAATGAAGTAGAAAACATGATTTTAGGTGGATTAATTGAGGAGATTATTGTAAATTTATGA

Protein sequence

>Msa0899980

MYKPFVTCDDPKGVVECGSIRRYRSNSHKMKDKTKSRKPAENLETNKQDKEEKVSKGSTERDFDPSSLQLVEVSRGAAKLNNMIESWSRGVRYDGKSDDIAKDLLKGALDLQESLEMLRKVQEASNSMGRLKRRQEEKHERSKIDANVNDGNRSTHSNQFFEHNSAYGSSSSCREELKKVIKESLVRQNLFQSTSTSEGLDSASAAFPSTSSSQSSVVWYDKLSDSSCSPTFSRKEKSTNLVARLMGLEQSPSRTFPSVMQKQSENQKIVNQKRPVFEIDTPKVRKHSSIFENPEREKTLREILETTHFNGLLKSSPIREHRLRNHVNHSNDLHYEQFDDLPPIVLMKPRRASYQEFVETYEPVPREEFSFRNPKAKGVPSKTFKPREGSTTNMRKEMMEENLSKKFIKEERSKRVNEFLEYDVKEIKAVESKKVQKASHRSQASETVDEKAKVKNITILRKPIQKEVSKAKIVAKAQDQGEIRSSSEKLRKPRSVSRIEKNEIPSRKSISSNSNTTITKPKTQKVNSSKELRKSQMKKQISVDLPEAAKPIDEKLKQEEGMSFGVSCKDDCAEIKIITTVTEDLIVEDEVDTYANKTRDNCEEGQNSSVDDVLMLNCEHENDTILAEEARDTTSVSETCFNQDKDIADTVCIGETDFEPDKDTSELKYLLLTSKSFIDHADEFLNLDIGYPKILPKIETNGISNTRLYLDCANELAERKSLQESSQLVHPLLLTCVGNSRLQISLGSLVEEINNAIDSLTSYSENSETKLILDNICAMLERDMKCNNRLINGMWNCGWRHGFSCDEAEQAVNEVENMILGGLIEEIIVNL*