AlfalfaGEDB | Msa0438590

M. sativa cultivar zhongmu-4 / Msa0438590

KEGG: K11647
GO: GO:0000182 GO:0000228 GO:0000785 GO:0000790 GO:0001085 GO:0001102 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005975 GO:0005984 GO:0005985 GO:0005987 GO:0006066 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006281 GO:0006302 GO:0006310 GO:0006325 GO:0006338 GO:0006355 GO:0006357 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007154 GO:0008094 GO:0008134 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009059 GO:0009267 GO:0009311 GO:0009313 GO:0009605 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0009991 GO:0010453 GO:0010455 GO:0010468 GO:0010556 GO:0010557 GO:0010570 GO:0010604 GO:0010628 GO:0010810 GO:0010811 GO:0016043 GO:0016052 GO:0016462 GO:0016514 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019219 GO:0019222 GO:0030155 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031490 GO:0031491 GO:0031492 GO:0031494 GO:0031496 GO:0031667 GO:0031668 GO:0031669 GO:0031974 GO:0031981 GO:0032991 GO:0033554 GO:0033613 GO:0034198 GO:0034641 GO:0034645 GO:0034728 GO:0036003 GO:0040008 GO:0042148 GO:0042393 GO:0042594 GO:0042623 GO:0042766 GO:0043044 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0043618 GO:0043620 GO:0043900 GO:0043902 GO:0043933 GO:0044107 GO:0044109 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044260 GO:0044262 GO:0044275 GO:0044281 GO:0044282 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0044877 GO:0045595 GO:0045597 GO:0045785 GO:0045893 GO:0045927 GO:0045935 GO:0045944 GO:0046164 GO:0046352 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051276 GO:0051716 GO:0060255 GO:0061412 GO:0065007 GO:0070013 GO:0070577 GO:0070603 GO:0070784 GO:0070786 GO:0071496 GO:0071704 GO:0071824 GO:0071840 GO:0080090 GO:0090033 GO:0090304 GO:0097159 GO:0140030 GO:0140033 GO:1900187 GO:1900189 GO:1900190 GO:1900192 GO:1900428 GO:1900430 GO:1901360 GO:1901363 GO:1901575 GO:1901576 GO:1901615 GO:1901616 GO:1902494 GO:1902680 GO:1903506 GO:1903508 GO:1904949 GO:1990837 GO:1990928 GO:2000112 GO:2000217 GO:2000219 GO:2000241 GO:2000243 GO:2001141
PFAM: -

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0438590	XP_003610678.1	97.778	135	3	0	3	137	41	175	4.50e-86	281

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0438590	sp\|F4J9M5\|CHR12_ARATH	62.698	126	47	0	11	136	82	207	1.38e-47	167

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0438590	G7K2A2	97.778	135	3	0	3	137	41	175	2.15e-86	281

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0004880	Msa0438590	0.801996	6.917417e-49	-8.615850e-47
Msa0017510	Msa0438590	0.814338	1.620876e-51	-8.615850e-47
Msa0022750	Msa0438590	-0.807057	6.086921e-50	-8.615850e-47
Msa0026430	Msa0438590	0.813346	2.681198e-51	-8.615850e-47
Msa0032370	Msa0438590	0.807420	5.098105e-50	-8.615850e-47
Msa0043560	Msa0438590	0.813505	2.474772e-51	-8.615850e-47
Msa0046100	Msa0438590	0.823541	1.310426e-53	-8.615850e-47
Msa0048000	Msa0438590	0.810874	9.279917e-51	-8.615850e-47
Msa0054530	Msa0438590	0.801681	8.028717e-49	-8.615850e-47
Msa0061340	Msa0438590	0.804225	2.392396e-49	-8.615850e-47
Msa0094850	Msa0438590	0.804503	2.094119e-49	-8.615850e-47
Msa0102270	Msa0438590	0.821568	3.768191e-53	-8.615850e-47
Msa0105070	Msa0438590	0.813812	2.117181e-51	-8.615850e-47
Msa0122590	Msa0438590	0.803398	3.552799e-49	-8.615850e-47
Msa0123300	Msa0438590	0.812463	4.186917e-51	-8.615850e-47
Msa0143380	Msa0438590	0.804881	1.746070e-49	-8.615850e-47
Msa0146260	Msa0438590	0.810468	1.135721e-50	-8.615850e-47
Msa0157290	Msa0438590	0.815332	9.762105e-52	-8.615850e-47
Msa0197930	Msa0438590	0.811490	6.819608e-51	-8.615850e-47
Msa0205840	Msa0438590	0.805510	1.289076e-49	-8.615850e-47
Msa0205850	Msa0438590	0.816150	6.414688e-52	-8.615850e-47
Msa0212990	Msa0438590	0.802677	5.008754e-49	-8.615850e-47
Msa0215320	Msa0438590	-0.803776	2.965663e-49	-8.615850e-47
Msa0227470	Msa0438590	0.821015	5.055009e-53	-8.615850e-47
Msa0237310	Msa0438590	0.809323	2.002502e-50	-8.615850e-47
Msa0369850	Msa0438590	0.811428	7.037521e-51	-8.615850e-47
Msa0387250	Msa0438590	0.841206	5.467657e-58	-8.615850e-47
Msa0388960	Msa0438590	0.822255	2.612730e-53	-8.615850e-47
Msa0395790	Msa0438590	0.804149	2.481485e-49	-8.615850e-47
Msa0398240	Msa0438590	0.800760	1.238741e-48	-8.615850e-47
Msa0407890	Msa0438590	0.814183	1.754044e-51	-8.615850e-47
Msa0410650	Msa0438590	0.803026	4.242342e-49	-8.615850e-47
Msa0438590	Msa0439970	0.815745	7.896401e-52	-8.615850e-47
Msa0438590	Msa0452920	0.804329	2.276601e-49	-8.615850e-47
Msa0438590	Msa0467430	0.819388	1.192381e-52	-8.615850e-47
Msa0438590	Msa0484780	0.830574	2.720226e-55	-8.615850e-47
Msa0438590	Msa0495320	0.849404	3.304669e-60	-8.615850e-47
Msa0438590	Msa0495330	0.826995	1.997734e-54	-8.615850e-47
Msa0438590	Msa0503060	0.802896	4.513198e-49	-8.615850e-47
Msa0438590	Msa0512900	0.809005	2.342765e-50	-8.615850e-47
Msa0438590	Msa0523460	0.810749	9.871951e-51	-8.615850e-47
Msa0438590	Msa0527550	0.802690	4.976570e-49	-8.615850e-47
Msa0438590	Msa0574890	0.805431	1.339411e-49	-8.615850e-47
Msa0438590	Msa0587940	0.802643	5.090341e-49	-8.615850e-47
Msa0438590	Msa0626220	0.800042	1.735342e-48	-8.615850e-47
Msa0438590	Msa0626280	0.808291	3.329496e-50	-8.615850e-47
Msa0438590	Msa0657750	0.832971	6.969702e-56	-8.615850e-47
Msa0438590	Msa0682550	0.846420	2.196745e-59	-8.615850e-47
Msa0438590	Msa0683510	0.809899	1.506016e-50	-8.615850e-47
Msa0438590	Msa0688070	0.806898	6.578091e-50	-8.615850e-47
Msa0438590	Msa0690520	0.801770	7.699231e-49	-8.615850e-47
Msa0438590	Msa0693380	0.809429	1.900269e-50	-8.615850e-47
Msa0438590	Msa0702350	0.819199	1.316526e-52	-8.615850e-47
Msa0438590	Msa0702570	0.817982	2.486224e-52	-8.615850e-47
Msa0438590	Msa0702680	0.804905	1.726181e-49	-8.615850e-47
Msa0438590	Msa0740640	0.815944	7.131948e-52	-8.615850e-47
Msa0438590	Msa0749290	0.806561	7.749126e-50	-8.615850e-47
Msa0438590	Msa0756540	0.817095	3.938029e-52	-8.615850e-47
Msa0438590	Msa0766580	0.815479	9.053342e-52	-8.615850e-47
Msa0438590	Msa0767220	0.817000	4.138162e-52	-8.615850e-47
Msa0438590	Msa0816710	0.807390	5.175181e-50	-8.615850e-47
Msa0438590	Msa0824660	0.807260	5.512267e-50	-8.615850e-47
Msa0438590	Msa0828920	0.832766	7.839233e-56	-8.615850e-47
Msa0438590	Msa0868440	0.805207	1.492219e-49	-8.615850e-47
Msa0438590	Msa0870530	0.813693	2.249686e-51	-8.615850e-47
Msa0438590	Msa0880140	0.811403	7.125307e-51	-8.615850e-47
Msa0438590	Msa0896750	0.801005	1.103952e-48	-8.615850e-47
Msa0438590	Msa0903700	0.801373	9.283459e-49	-8.615850e-47
Msa0438590	Msa0908050	0.848530	5.781035e-60	-8.615850e-47
Msa0438590	Msa0922410	0.808989	2.361246e-50	-8.615850e-47
Msa0438590	Msa0924310	0.820299	7.382819e-53	-8.615850e-47
Msa0438590	Msa0933230	0.802603	5.188267e-49	-8.615850e-47
Msa0438590	Msa0942190	0.865167	7.187591e-65	-8.615850e-47
Msa0438590	Msa0969520	0.814027	1.898768e-51	-8.615850e-47
Msa0438590	Msa0990350	0.814572	1.439289e-51	-8.615850e-47
Msa0438590	Msa1036410	0.823927	1.064373e-53	-8.615850e-47
Msa0438590	Msa1037910	0.801030	1.091410e-48	-8.615850e-47
Msa0438590	Msa1082500	0.820317	7.311818e-53	-8.615850e-47
Msa0438590	Msa1085200	0.801322	9.511883e-49	-8.615850e-47
Msa0438590	Msa1087980	0.800537	1.375562e-48	-8.615850e-47
Msa0438590	Msa1129970	0.804642	1.958193e-49	-8.615850e-47
Msa0438590	Msa1137570	0.817246	3.643469e-52	-8.615850e-47
Msa0438590	Msa1144750	0.814043	1.883161e-51	-8.615850e-47
Msa0438590	Msa1172670	0.805739	1.154022e-49	-8.615850e-47
Msa0438590	Msa1179940	0.813653	2.294960e-51	-8.615850e-47
Msa0438590	Msa1179970	0.818029	2.425559e-52	-8.615850e-47
Msa0438590	Msa1193290	0.804047	2.606118e-49	-8.615850e-47
Msa0438590	Msa1197060	0.818185	2.236997e-52	-8.615850e-47
Msa0438590	Msa1199570	0.805492	1.300620e-49	-8.615850e-47
Msa0438590	Msa1199830	-0.802159	6.404835e-49	-8.615850e-47
Msa0438590	Msa1224480	0.803719	3.048858e-49	-8.615850e-47
Msa0438590	Msa1224830	0.824834	6.512567e-54	-8.615850e-47
Msa0438590	Msa1236100	0.819299	1.249599e-52	-8.615850e-47
Msa0438590	Msa1283860	0.806113	9.632241e-50	-8.615850e-47
Msa0438590	Msa1306850	0.834399	3.065355e-56	-8.615850e-47
Msa0438590	Msa1313150	0.817696	2.884563e-52	-8.615850e-47
Msa0438590	Msa1314340	0.819743	9.895703e-53	-8.615850e-47
Msa0438590	Msa1328710	0.801336	9.447945e-49	-8.615850e-47
Msa0438590	Msa1333730	0.814130	1.801840e-51	-8.615850e-47
Msa0438590	Msa1348360	0.821310	4.322201e-53	-8.615850e-47
Msa0438590	Msa1353470	0.801244	9.867318e-49	-8.615850e-47
Msa0438590	Msa1374040	0.806570	7.714922e-50	-8.615850e-47
Msa0438590	Msa1404540	0.803568	3.275701e-49	-8.615850e-47
Msa0438590	Msa1418260	0.806731	7.133239e-50	-8.615850e-47
Msa0438590	Msa1423880	0.810253	1.263515e-50	-8.615850e-47
Msa0438590	Msa1424680	0.813981	1.943479e-51	-8.615850e-47
Msa0438590	Msa1452120	0.806396	8.395761e-50	-8.615850e-47
Msa0438590	Msa1457430	0.814202	1.737350e-51	-8.615850e-47
Msa0438590	Msa1460020	0.801372	9.289951e-49	-8.615850e-47
Msa0438590	Msa1466590	0.815106	1.095480e-51	-8.615850e-47
Msa0245940	Msa0438590	0.808256	3.387376e-50	-8.615850e-47
Msa0248970	Msa0438590	0.801889	7.275836e-49	-8.615850e-47
Msa0249100	Msa0438590	0.809431	1.898841e-50	-8.615850e-47
Msa0260810	Msa0438590	0.811552	6.613570e-51	-8.615850e-47
Msa0274360	Msa0438590	0.803059	4.177177e-49	-8.615850e-47
Msa0274730	Msa0438590	0.810305	1.231287e-50	-8.615850e-47
Msa0284520	Msa0438590	0.817054	4.023751e-52	-8.615850e-47
Msa0287650	Msa0438590	0.806954	6.398807e-50	-8.615850e-47
Msa0298240	Msa0438590	0.810946	8.949463e-51	-8.615850e-47
Msa0305700	Msa0438590	0.809352	1.974485e-50	-8.615850e-47
Msa0311700	Msa0438590	0.807166	5.773074e-50	-8.615850e-47
Msa0315530	Msa0438590	0.810028	1.413225e-50	-8.615850e-47
Msa0316800	Msa0438590	0.803376	3.590126e-49	-8.615850e-47
Msa0323610	Msa0438590	0.804720	1.886407e-49	-8.615850e-47
Msa0330340	Msa0438590	0.812224	4.722261e-51	-8.615850e-47
Msa0333920	Msa0438590	0.801163	1.024819e-48	-8.615850e-47
Msa0334040	Msa0438590	0.806869	6.671406e-50	-8.615850e-47
Msa0351380	Msa0438590	0.814473	1.513044e-51	-8.615850e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0438590	MtrunA17_Chr5g0394201	97.778	135	3	0	3	137	41	175	4.14e-90	281
Msa0438590	MtrunA17_Chr1g0205891	64.706	136	48	0	2	137	45	180	3.57e-58	193

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0438590	AT3G06010.1	62.698	126	47	0	11	136	82	207	1.40e-48	167
Msa0438590	AT5G19310.1	58.824	136	55	1	2	136	60	195	3.30e-46	160

Find 38 sgRNAs with CRISPR-Local

Find 147 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAGTGCTTGCTCGAGCTTTA+TGG	0.164806	3_3:+2840125	Msa0438590:CDS
CTTGCAGCTAGCGGAGTTAC+AGG	0.263370	3_3:+2840592	Msa0438590:intron
GAATAGGTTTGCGTTGGAAC+TGG	0.295028	3_3:+2840084	Msa0438590:intron
CGGTTGCGGCGTCCTCCTTA+TGG	0.340101	3_3:+2840704	Msa0438590:CDS
CGGAAGTGAGCTCTGAATAT+TGG	0.365998	3_3:+2840627	Msa0438590:CDS
AATAGGTTTGCGTTGGAACT+GGG	0.388386	3_3:+2840085	Msa0438590:intron
TGGATGCTGATGATCAAATA+AGG	0.389131	3_3:+2840747	Msa0438590:CDS
GGAGCAATTAGGTCGTTGTT+TGG	0.394871	3_3:-2839727	None:intergenic
CAGTCAAACAATTGCTTGTC+GGG	0.399541	3_3:-2840671	None:intergenic
CGGCGTCCTCCTTATGGCAT+TGG	0.427791	3_3:+2840710	Msa0438590:CDS
ATGATCAAATAAGGAAGAAA+CGG	0.445030	3_3:+2840756	Msa0438590:CDS
AATCGATTAACTCAGCTTGA+AGG	0.454595	3_3:+2839804	Msa0438590:CDS
CGACAAGCAATTGTTTGACT+GGG	0.459694	3_3:+2840673	Msa0438590:CDS
CCGACAAGCAATTGTTTGAC+TGG	0.462855	3_3:+2840672	Msa0438590:CDS
TTCGAACTAGAGGAGCAATT+AGG	0.472631	3_3:-2839738	None:intergenic
TGATCAAATAAGGAAGAAAC+GGG	0.473142	3_3:+2840757	Msa0438590:CDS
CCAGTCAAACAATTGCTTGT+CGG	0.474883	3_3:-2840672	None:intergenic
TCATCAGCATCCATGGCAAA+TGG	0.492970	3_3:-2840737	None:intergenic
GCTCGAGCTTTATGGACTAA+AGG	0.500156	3_3:+2840133	Msa0438590:CDS
ACTGGGGCATGATGCGGTTG+CGG	0.514724	3_3:+2840690	Msa0438590:CDS
ATTGTTCAATTTCGAACTAG+AGG	0.524877	3_3:-2839748	None:intergenic
TATTTGATCATCAGCATCCA+TGG	0.530290	3_3:-2840744	None:intergenic
CGAGCAAGCACTTCGTCTGT+AGG	0.535925	3_3:-2840115	None:intergenic
AATGGATCTCCAATGCCATA+AGG	0.538089	3_3:-2840719	None:intergenic
TAGGTTTGCGTTGGAACTGG+GGG	0.539278	3_3:+2840087	Msa0438590:intron
TTGCAGCTAGCGGAGTTACA+GGG	0.545600	3_3:+2840593	Msa0438590:intron
TGAAAGCTCGTACTCAAGCT+CGG	0.578753	3_3:+2839775	Msa0438590:CDS
ATAGGTTTGCGTTGGAACTG+GGG	0.588261	3_3:+2840086	Msa0438590:intron
CATTGGAGATCCATTTGCCA+TGG	0.590311	3_3:+2840727	Msa0438590:CDS
AATAAGGAAGAAACGGGATG+CGG	0.610864	3_3:+2840763	Msa0438590:CDS
GCTAGCGGAGTTACAGGGGA+AGG	0.614964	3_3:+2840598	Msa0438590:intron
AAGGAAGAAACGGGATGCGG+AGG	0.618078	3_3:+2840766	Msa0438590:CDS
TGCAGCTAGCGGAGTTACAG+GGG	0.625984	3_3:+2840594	Msa0438590:intron
TGTTTGACTGGGGCATGATG+CGG	0.643991	3_3:+2840684	Msa0438590:CDS
GACAAGCAATTGTTTGACTG+GGG	0.650016	3_3:+2840674	Msa0438590:CDS
AGGTTTGCGTTGGAACTGGG+GGG	0.658941	3_3:+2840088	Msa0438590:intron
GGATCTCCAATGCCATAAGG+AGG	0.669764	3_3:-2840716	None:intergenic
GTTACAGGGGAAGGTTCGAA+CGG	0.670933	3_3:+2840607	Msa0438590:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!!	GTTTTTGATTATAAATTGAT+TGG	+	chr3_3:2840025-2840044	Msa0438590:intron	15.0%
!!	AAAAATAATAGTTTCATCAA+GGG	-	chr3_3:2840491-2840510	None:intergenic	15.0%
!!	TAAAAATAATAGTTTCATCA+AGG	-	chr3_3:2840492-2840511	None:intergenic	15.0%
!!!	GTTTTTGATTATAAATTGAT+TGG	+	chr3_3:2840025-2840044	Msa0438590:intron	15.0%
!!	AAAAATAATAGTTTCATCAA+GGG	-	chr3_3:2840491-2840510	None:intergenic	15.0%
!!	TAAAAATAATAGTTTCATCA+AGG	-	chr3_3:2840492-2840511	None:intergenic	15.0%
!!!	GTTGATTATTGTTTTTGAAT+AGG	+	chr3_3:2840068-2840087	Msa0438590:intron	20.0%
!!!	GTTGATTATTGTTTTTGAAT+AGG	+	chr3_3:2840068-2840087	Msa0438590:intron	20.0%
!	ATAATTGAATGTAATCACAC+CGG	+	chr3_3:2839982-2840001	Msa0438590:intron	25.0%
!!!	CTTTGAAACTACATAATTTG+TGG	+	chr3_3:2840266-2840285	Msa0438590:intron	25.0%
!	TGATATACGAAAAGCAATAA+AGG	-	chr3_3:2840455-2840474	None:intergenic	25.0%
!	ATGATCAAATAAGGAAGAAA+CGG	+	chr3_3:2840756-2840775	Msa0438590:CDS	25.0%
!	ATAATTGAATGTAATCACAC+CGG	+	chr3_3:2839982-2840001	Msa0438590:intron	25.0%
!!!	CTTTGAAACTACATAATTTG+TGG	+	chr3_3:2840266-2840285	Msa0438590:intron	25.0%
!	TGATATACGAAAAGCAATAA+AGG	-	chr3_3:2840455-2840474	None:intergenic	25.0%
!	ATGATCAAATAAGGAAGAAA+CGG	+	chr3_3:2840756-2840775	Msa0438590:CDS	25.0%
	ATTGTTCAATTTCGAACTAG+AGG	-	chr3_3:2839751-2839770	None:intergenic	30.0%
!!	TTGTTCATTGTTTTGTGTCT+TGG	+	chr3_3:2840176-2840195	Msa0438590:intron	30.0%
!!	TGTTCATTGTTTTGTGTCTT+GGG	+	chr3_3:2840177-2840196	Msa0438590:intron	30.0%
!	TGCTAAGTATGTGTTTGTTT+TGG	+	chr3_3:2840215-2840234	Msa0438590:intron	30.0%
!!!	TAAGTATGTGTTTGTTTTGG+CGG	+	chr3_3:2840218-2840237	Msa0438590:intron	30.0%
!	ACACGTTTCTTGTCATTTAT+CGG	-	chr3_3:2840549-2840568	None:intergenic	30.0%
	TGATCAAATAAGGAAGAAAC+GGG	+	chr3_3:2840757-2840776	Msa0438590:CDS	30.0%
	ATTGTTCAATTTCGAACTAG+AGG	-	chr3_3:2839751-2839770	None:intergenic	30.0%
!!	TTGTTCATTGTTTTGTGTCT+TGG	+	chr3_3:2840176-2840195	Msa0438590:intron	30.0%
!!	TGTTCATTGTTTTGTGTCTT+GGG	+	chr3_3:2840177-2840196	Msa0438590:intron	30.0%
!	TGCTAAGTATGTGTTTGTTT+TGG	+	chr3_3:2840215-2840234	Msa0438590:intron	30.0%
!!!	TAAGTATGTGTTTGTTTTGG+CGG	+	chr3_3:2840218-2840237	Msa0438590:intron	30.0%
!	ACACGTTTCTTGTCATTTAT+CGG	-	chr3_3:2840549-2840568	None:intergenic	30.0%
	TGATCAAATAAGGAAGAAAC+GGG	+	chr3_3:2840757-2840776	Msa0438590:CDS	30.0%
	AATCGATTAACTCAGCTTGA+AGG	+	chr3_3:2839804-2839823	Msa0438590:CDS	35.0%
	AACACAAGTTACACAACACA+AGG	-	chr3_3:2839877-2839896	None:intergenic	35.0%
!	GTTTTTGAATAGGTTTGCGT+TGG	+	chr3_3:2840078-2840097	Msa0438590:intron	35.0%
	TGCTAAACATGTGGCTAAAT+TGG	+	chr3_3:2840350-2840369	Msa0438590:intron	35.0%
!!!	GTTTTAATTGACATGCAAGC+AGG	-	chr3_3:2840527-2840546	None:intergenic	35.0%
!!!	ACTTTTTTTCTTGCAGCTAG+CGG	+	chr3_3:2840583-2840602	Msa0438590:intron	35.0%
	TATTTGATCATCAGCATCCA+TGG	-	chr3_3:2840747-2840766	None:intergenic	35.0%
	TGGATGCTGATGATCAAATA+AGG	+	chr3_3:2840747-2840766	Msa0438590:CDS	35.0%
	AATCGATTAACTCAGCTTGA+AGG	+	chr3_3:2839804-2839823	Msa0438590:CDS	35.0%
	AACACAAGTTACACAACACA+AGG	-	chr3_3:2839877-2839896	None:intergenic	35.0%
!	GTTTTTGAATAGGTTTGCGT+TGG	+	chr3_3:2840078-2840097	Msa0438590:intron	35.0%
	TGCTAAACATGTGGCTAAAT+TGG	+	chr3_3:2840350-2840369	Msa0438590:intron	35.0%
!!!	GTTTTAATTGACATGCAAGC+AGG	-	chr3_3:2840527-2840546	None:intergenic	35.0%
!!!	ACTTTTTTTCTTGCAGCTAG+CGG	+	chr3_3:2840583-2840602	Msa0438590:intron	35.0%
	TATTTGATCATCAGCATCCA+TGG	-	chr3_3:2840747-2840766	None:intergenic	35.0%
	TGGATGCTGATGATCAAATA+AGG	+	chr3_3:2840747-2840766	Msa0438590:CDS	35.0%
	TTCGAACTAGAGGAGCAATT+AGG	-	chr3_3:2839741-2839760	None:intergenic	40.0%
	AATAGGTTTGCGTTGGAACT+GGG	+	chr3_3:2840085-2840104	Msa0438590:intron	40.0%
!!!	TATGTGTTTGTTTTGGCGGT+GGG	+	chr3_3:2840222-2840241	Msa0438590:intron	40.0%
	CAAATGGTCTGCTAAACATG+TGG	+	chr3_3:2840341-2840360	Msa0438590:intron	40.0%
	CATTCACATACGACAAGCAT+GGG	-	chr3_3:2840422-2840441	None:intergenic	40.0%
	TCATTCACATACGACAAGCA+TGG	-	chr3_3:2840423-2840442	None:intergenic	40.0%
	AAAAAAAGTCCTTGCCGACA+AGG	-	chr3_3:2840572-2840591	None:intergenic	40.0%
	CAGTCAAACAATTGCTTGTC+GGG	-	chr3_3:2840674-2840693	None:intergenic	40.0%
	CCAGTCAAACAATTGCTTGT+CGG	-	chr3_3:2840675-2840694	None:intergenic	40.0%
	CGACAAGCAATTGTTTGACT+GGG	+	chr3_3:2840673-2840692	Msa0438590:CDS	40.0%
	GACAAGCAATTGTTTGACTG+GGG	+	chr3_3:2840674-2840693	Msa0438590:CDS	40.0%
	AATGGATCTCCAATGCCATA+AGG	-	chr3_3:2840722-2840741	None:intergenic	40.0%
	AATAAGGAAGAAACGGGATG+CGG	+	chr3_3:2840763-2840782	Msa0438590:CDS	40.0%
	TTCGAACTAGAGGAGCAATT+AGG	-	chr3_3:2839741-2839760	None:intergenic	40.0%
	AATAGGTTTGCGTTGGAACT+GGG	+	chr3_3:2840085-2840104	Msa0438590:intron	40.0%
!!!	TATGTGTTTGTTTTGGCGGT+GGG	+	chr3_3:2840222-2840241	Msa0438590:intron	40.0%
	CAAATGGTCTGCTAAACATG+TGG	+	chr3_3:2840341-2840360	Msa0438590:intron	40.0%
	CATTCACATACGACAAGCAT+GGG	-	chr3_3:2840422-2840441	None:intergenic	40.0%
	TCATTCACATACGACAAGCA+TGG	-	chr3_3:2840423-2840442	None:intergenic	40.0%
	AAAAAAAGTCCTTGCCGACA+AGG	-	chr3_3:2840572-2840591	None:intergenic	40.0%
	CAGTCAAACAATTGCTTGTC+GGG	-	chr3_3:2840674-2840693	None:intergenic	40.0%
	CCAGTCAAACAATTGCTTGT+CGG	-	chr3_3:2840675-2840694	None:intergenic	40.0%
	CGACAAGCAATTGTTTGACT+GGG	+	chr3_3:2840673-2840692	Msa0438590:CDS	40.0%
	GACAAGCAATTGTTTGACTG+GGG	+	chr3_3:2840674-2840693	Msa0438590:CDS	40.0%
	AATGGATCTCCAATGCCATA+AGG	-	chr3_3:2840722-2840741	None:intergenic	40.0%
	AATAAGGAAGAAACGGGATG+CGG	+	chr3_3:2840763-2840782	Msa0438590:CDS	40.0%
	GGAGCAATTAGGTCGTTGTT+TGG	-	chr3_3:2839730-2839749	None:intergenic	45.0%
	TGAAAGCTCGTACTCAAGCT+CGG	+	chr3_3:2839775-2839794	Msa0438590:CDS	45.0%
	GAATAGGTTTGCGTTGGAAC+TGG	+	chr3_3:2840084-2840103	Msa0438590:intron	45.0%
	ATAGGTTTGCGTTGGAACTG+GGG	+	chr3_3:2840086-2840105	Msa0438590:intron	45.0%
	AAGTGCTTGCTCGAGCTTTA+TGG	+	chr3_3:2840125-2840144	Msa0438590:CDS	45.0%
!	GCTCGAGCTTTATGGACTAA+AGG	+	chr3_3:2840133-2840152	Msa0438590:CDS	45.0%
!!!	GTATGTGTTTGTTTTGGCGG+TGG	+	chr3_3:2840221-2840240	Msa0438590:intron	45.0%
	TGAAATGCTATGACGTCGTG+TGG	+	chr3_3:2840306-2840325	Msa0438590:intron	45.0%
	GACAAGAAACGTGTCCTTGT+CGG	+	chr3_3:2840555-2840574	Msa0438590:intron	45.0%
!!	CGGAAGTGAGCTCTGAATAT+TGG	+	chr3_3:2840627-2840646	Msa0438590:CDS	45.0%
	CCGACAAGCAATTGTTTGAC+TGG	+	chr3_3:2840672-2840691	Msa0438590:CDS	45.0%
	CATTGGAGATCCATTTGCCA+TGG	+	chr3_3:2840727-2840746	Msa0438590:CDS	45.0%
	TCATCAGCATCCATGGCAAA+TGG	-	chr3_3:2840740-2840759	None:intergenic	45.0%
	GGAGCAATTAGGTCGTTGTT+TGG	-	chr3_3:2839730-2839749	None:intergenic	45.0%
	TGAAAGCTCGTACTCAAGCT+CGG	+	chr3_3:2839775-2839794	Msa0438590:CDS	45.0%
	GAATAGGTTTGCGTTGGAAC+TGG	+	chr3_3:2840084-2840103	Msa0438590:intron	45.0%
	ATAGGTTTGCGTTGGAACTG+GGG	+	chr3_3:2840086-2840105	Msa0438590:intron	45.0%
	AAGTGCTTGCTCGAGCTTTA+TGG	+	chr3_3:2840125-2840144	Msa0438590:CDS	45.0%
!	GCTCGAGCTTTATGGACTAA+AGG	+	chr3_3:2840133-2840152	Msa0438590:CDS	45.0%
!!!	GTATGTGTTTGTTTTGGCGG+TGG	+	chr3_3:2840221-2840240	Msa0438590:intron	45.0%
	TGAAATGCTATGACGTCGTG+TGG	+	chr3_3:2840306-2840325	Msa0438590:intron	45.0%
	GACAAGAAACGTGTCCTTGT+CGG	+	chr3_3:2840555-2840574	Msa0438590:intron	45.0%
!!	CGGAAGTGAGCTCTGAATAT+TGG	+	chr3_3:2840627-2840646	Msa0438590:CDS	45.0%
	CCGACAAGCAATTGTTTGAC+TGG	+	chr3_3:2840672-2840691	Msa0438590:CDS	45.0%
	CATTGGAGATCCATTTGCCA+TGG	+	chr3_3:2840727-2840746	Msa0438590:CDS	45.0%
	TCATCAGCATCCATGGCAAA+TGG	-	chr3_3:2840740-2840759	None:intergenic	45.0%
	ATCACACCGGACACATGTCT+CGG	+	chr3_3:2839995-2840014	Msa0438590:intron	50.0%
	AATCTCCCGAGACATGTGTC+CGG	-	chr3_3:2840004-2840023	None:intergenic	50.0%
	TAGGTTTGCGTTGGAACTGG+GGG	+	chr3_3:2840087-2840106	Msa0438590:intron	50.0%
	AATGCTATGACGTCGTGTGG+TGG	+	chr3_3:2840309-2840328	Msa0438590:intron	50.0%
	ATGCTATGACGTCGTGTGGT+GGG	+	chr3_3:2840310-2840329	Msa0438590:intron	50.0%
	GACATGCAAGCAGGCAGATA+TGG	-	chr3_3:2840518-2840537	None:intergenic	50.0%
	TTGCAGCTAGCGGAGTTACA+GGG	+	chr3_3:2840593-2840612	Msa0438590:intron	50.0%
	GTTACAGGGGAAGGTTCGAA+CGG	+	chr3_3:2840607-2840626	Msa0438590:CDS	50.0%
	TGTTTGACTGGGGCATGATG+CGG	+	chr3_3:2840684-2840703	Msa0438590:CDS	50.0%
	GGATCTCCAATGCCATAAGG+AGG	-	chr3_3:2840719-2840738	None:intergenic	50.0%
	ATCACACCGGACACATGTCT+CGG	+	chr3_3:2839995-2840014	Msa0438590:intron	50.0%
	AATCTCCCGAGACATGTGTC+CGG	-	chr3_3:2840004-2840023	None:intergenic	50.0%
	TAGGTTTGCGTTGGAACTGG+GGG	+	chr3_3:2840087-2840106	Msa0438590:intron	50.0%
	AATGCTATGACGTCGTGTGG+TGG	+	chr3_3:2840309-2840328	Msa0438590:intron	50.0%
	ATGCTATGACGTCGTGTGGT+GGG	+	chr3_3:2840310-2840329	Msa0438590:intron	50.0%
	GACATGCAAGCAGGCAGATA+TGG	-	chr3_3:2840518-2840537	None:intergenic	50.0%
	TTGCAGCTAGCGGAGTTACA+GGG	+	chr3_3:2840593-2840612	Msa0438590:intron	50.0%
	GTTACAGGGGAAGGTTCGAA+CGG	+	chr3_3:2840607-2840626	Msa0438590:CDS	50.0%
	TGTTTGACTGGGGCATGATG+CGG	+	chr3_3:2840684-2840703	Msa0438590:CDS	50.0%
	GGATCTCCAATGCCATAAGG+AGG	-	chr3_3:2840719-2840738	None:intergenic	50.0%
	TCACACCGGACACATGTCTC+GGG	+	chr3_3:2839996-2840015	Msa0438590:intron	55.0%
	GGACACATGTCTCGGGAGAT+TGG	+	chr3_3:2840003-2840022	Msa0438590:intron	55.0%
	AGGTTTGCGTTGGAACTGGG+GGG	+	chr3_3:2840088-2840107	Msa0438590:intron	55.0%
	CGAGCAAGCACTTCGTCTGT+AGG	-	chr3_3:2840118-2840137	None:intergenic	55.0%
	GAAACGTGTCCTTGTCGGCA+AGG	+	chr3_3:2840560-2840579	Msa0438590:intron	55.0%
	CTTGCAGCTAGCGGAGTTAC+AGG	+	chr3_3:2840592-2840611	Msa0438590:intron	55.0%
	TGCAGCTAGCGGAGTTACAG+GGG	+	chr3_3:2840594-2840613	Msa0438590:intron	55.0%
	AAGGAAGAAACGGGATGCGG+AGG	+	chr3_3:2840766-2840785	Msa0438590:CDS	55.0%
	TCACACCGGACACATGTCTC+GGG	+	chr3_3:2839996-2840015	Msa0438590:intron	55.0%
	GGACACATGTCTCGGGAGAT+TGG	+	chr3_3:2840003-2840022	Msa0438590:intron	55.0%
	AGGTTTGCGTTGGAACTGGG+GGG	+	chr3_3:2840088-2840107	Msa0438590:intron	55.0%
	CGAGCAAGCACTTCGTCTGT+AGG	-	chr3_3:2840118-2840137	None:intergenic	55.0%
	GAAACGTGTCCTTGTCGGCA+AGG	+	chr3_3:2840560-2840579	Msa0438590:intron	55.0%
	CTTGCAGCTAGCGGAGTTAC+AGG	+	chr3_3:2840592-2840611	Msa0438590:intron	55.0%
	TGCAGCTAGCGGAGTTACAG+GGG	+	chr3_3:2840594-2840613	Msa0438590:intron	55.0%
!	ACGTCGTGTGGTGGGAGTGT+GGG	+	chr3_3:2840318-2840337	Msa0438590:intron	60.0%
!	GTGGTGGGAGTGTGGGCAAA+TGG	+	chr3_3:2840325-2840344	Msa0438590:intron	60.0%
	GCTAGCGGAGTTACAGGGGA+AGG	+	chr3_3:2840598-2840617	Msa0438590:intron	60.0%
	ACTGGGGCATGATGCGGTTG+CGG	+	chr3_3:2840690-2840709	Msa0438590:CDS	60.0%
	CGGCGTCCTCCTTATGGCAT+TGG	+	chr3_3:2840710-2840729	Msa0438590:CDS	60.0%
!	ACGTCGTGTGGTGGGAGTGT+GGG	+	chr3_3:2840318-2840337	Msa0438590:intron	60.0%
!	GTGGTGGGAGTGTGGGCAAA+TGG	+	chr3_3:2840325-2840344	Msa0438590:intron	60.0%
	GCTAGCGGAGTTACAGGGGA+AGG	+	chr3_3:2840598-2840617	Msa0438590:intron	60.0%
	ACTGGGGCATGATGCGGTTG+CGG	+	chr3_3:2840690-2840709	Msa0438590:CDS	60.0%
	CGGCGTCCTCCTTATGGCAT+TGG	+	chr3_3:2840710-2840729	Msa0438590:CDS	60.0%
!	GACGTCGTGTGGTGGGAGTG+TGG	+	chr3_3:2840317-2840336	Msa0438590:intron	65.0%
	CGGTTGCGGCGTCCTCCTTA+TGG	+	chr3_3:2840704-2840723	Msa0438590:CDS	65.0%
!	GACGTCGTGTGGTGGGAGTG+TGG	+	chr3_3:2840317-2840336	Msa0438590:intron	65.0%
	CGGTTGCGGCGTCCTCCTTA+TGG	+	chr3_3:2840704-2840723	Msa0438590:CDS	65.0%

Chromosome	Type	Strat	End	Strand	Name
chr3_3	gene	2839669	2840787	2839669	ID=Msa0438590;Name=Msa0438590
chr3_3	mRNA	2839669	2840787	2839669	ID=Msa0438590-mRNA-1;Parent=Msa0438590;Name=Msa0438590-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0\|1\|0.33\|1\|1\|1\|3\|0\|137
chr3_3	exon	2839669	2839825	2839669	ID=Msa0438590-mRNA-1:exon:720;Parent=Msa0438590-mRNA-1
chr3_3	exon	2840090	2840154	2840090	ID=Msa0438590-mRNA-1:exon:721;Parent=Msa0438590-mRNA-1
chr3_3	exon	2840599	2840787	2840599	ID=Msa0438590-mRNA-1:exon:722;Parent=Msa0438590-mRNA-1
chr3_3	CDS	2839669	2839825	2839669	ID=Msa0438590-mRNA-1:cds;Parent=Msa0438590-mRNA-1
chr3_3	CDS	2840090	2840154	2840090	ID=Msa0438590-mRNA-1:cds;Parent=Msa0438590-mRNA-1
chr3_3	CDS	2840599	2840787	2840599	ID=Msa0438590-mRNA-1:cds;Parent=Msa0438590-mRNA-1

Gene Sequence

>Msa0438590

GAGGGAAATTCTACACAGGATGATGATAGTTTATTGACTGAGCTTCAAGATGCAATTTCCAAACAACGACCTAATTGCTCCTCTAGTTCGAAATTGAACAATGCTATGAAAGCTCGTACTCAAGCTCGGTTTCAGAATCGATTAACTCAGCTTGAAGGTTTGCGTTGGAACTGGGGGGACAACCTACAGACGAAGTGCTTGCTCGAGCTTTATGGACTAAAGCTAGCGGAGTTACAGGGGAAGGTTCGAACGGAAGTGAGCTCTGAATATTGGCTTAATGTTAACTGTGCATATCCCGACAAGCAATTGTTTGACTGGGGCATGATGCGGTTGCGGCGTCCTCCTTATGGCATTGGAGATCCATTTGCCATGGATGCTGATGATCAAATAAGGAAGAAACGGGATGCGGAG

Protein sequence

>Msa0438590

EGNSTQDDDSLLTELQDAISKQRPNCSSSSKLNNAMKARTQARFQNRLTQLEGLRWNWGDNLQTKCLLELYGLKLAELQGKVRTEVSSEYWLNVNCAYPDKQLFDWGMMRLRRPPYGIGDPFAMDADDQIRKKRDAE