AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1452120


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1452120 MtrunA17_Chr7g0245151 85.106 94 6 2 62 155 85 170 2.37e-44 154
Msa1452120 MtrunA17_Chr7g0245161 39.130 138 36 4 61 155 189 321 6.49e-16 74.3
Msa1452120 MtrunA17_Chr7g0245161 45.038 131 35 3 35 128 1 131 1.46e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 40 sgRNAs with CRISPR-Local

Find 196 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACAAGAATAATGTCGATATT+AGG 0.174392 tig0033666:+32767 Msa1452120:CDS
GGGTTGGAGAAACAGTTATT+AGG 0.235636 tig0033666:+32788 Msa1452120:CDS
CAAGAATAATGTCGATATTA+GGG 0.330282 tig0033666:+32768 Msa1452120:CDS
GGTTGGAGAAACAGTTATTA+GGG 0.339456 tig0033666:+32789 Msa1452120:CDS
CTGTTATAGGTTAGTTGCTA+TGG 0.345406 tig0033666:+33903 Msa1452120:intron
ATTGGGATTGTGATTGGAAT+TGG 0.345975 tig0033666:+32986 Msa1452120:CDS
TTCACATTCAGATCTTTGTT+TGG 0.349137 tig0033666:-33021 None:intergenic
TTACAAAGAGACATTGATAA+TGG 0.358434 tig0033666:-33934 None:intergenic
TCACATTCAGATCTTTGTTT+GGG 0.388978 tig0033666:-33020 None:intergenic
TTGGGATTGTGATTGGAATT+GGG 0.403296 tig0033666:+32987 Msa1452120:CDS
GATCTGAATGTGAATTTCAA+TGG 0.423691 tig0033666:+33030 Msa1452120:CDS
GTGAGGATTGGGATTGTGAT+TGG 0.445103 tig0033666:+32980 Msa1452120:CDS
TTCAATCAGAGATCAAAATC+AGG 0.463274 tig0033666:+32897 Msa1452120:CDS
TACAAAGAGACATTGATAAT+GGG 0.464184 tig0033666:-33933 None:intergenic
TCCGGAGAGCTTGTTGGTGT+TGG 0.488455 tig0033666:-32552 None:intergenic
AAATGCTTACCAAGAGAATC+CGG 0.489543 tig0033666:-32570 None:intergenic
TTCAATGGACATCTGCCAAA+TGG 0.490536 tig0033666:+33045 Msa1452120:CDS
AGGCTGTGGTGAATTCAAAC+GGG 0.497124 tig0033666:+32863 Msa1452120:CDS
ACAAGCTCTCCGGATTCTCT+TGG 0.499430 tig0033666:+32561 Msa1452120:CDS
GAGGCTGTGGTGAATTCAAA+CGG 0.504223 tig0033666:+32862 Msa1452120:CDS
GCAAAGTGTGAGTGAGGATT+GGG 0.505991 tig0033666:+32969 Msa1452120:CDS
TGCTAATATTTCAGAGGCTG+TGG 0.515777 tig0033666:+32849 Msa1452120:CDS
GATCAAAATCAGGTGAATAA+CGG 0.517027 tig0033666:+32907 Msa1452120:CDS
AATGAAACGGTGAAGGGTGT+TGG 0.517766 tig0033666:-32524 None:intergenic
GGCAAAGTGTGAGTGAGGAT+TGG 0.518868 tig0033666:+32968 Msa1452120:CDS
AATAATGTCGATATTAGGGT+TGG 0.529892 tig0033666:+32772 Msa1452120:CDS
AGAGACATTGATAATGGGTA+AGG 0.534466 tig0033666:-33928 None:intergenic
GGATGGAGGATGATAAGAAA+AGG 0.537485 tig0033666:+32713 Msa1452120:CDS
AGAGAATCCGGAGAGCTTGT+TGG 0.542121 tig0033666:-32558 None:intergenic
GCCAACACCAACAAGCTCTC+CGG 0.547208 tig0033666:+32551 Msa1452120:CDS
TCAGGTGAATAACGGTAAAG+AGG 0.548266 tig0033666:+32915 Msa1452120:CDS
TCTTCTAGTGAACGATGCTA+AGG 0.556390 tig0033666:+32819 Msa1452120:CDS
GTGGTGAATTCAAACGGGGA+TGG 0.590057 tig0033666:+32868 Msa1452120:CDS
TCATGGGCAAAGTGTGAGTG+AGG 0.627639 tig0033666:+32963 Msa1452120:CDS
CGAGCATGCTAATATTTCAG+AGG 0.635843 tig0033666:+32843 Msa1452120:CDS
GCGACGAATGAAACGGTGAA+GGG 0.636953 tig0033666:-32530 None:intergenic
GGTGTTGGCGACGAATGAAA+CGG 0.656759 tig0033666:-32537 None:intergenic
GGCGACGAATGAAACGGTGA+AGG 0.665943 tig0033666:-32531 None:intergenic
TGATTGGAATTGGGATGCAG+AGG 0.672333 tig0033666:+32996 Msa1452120:CDS
GGCTGTGGTGAATTCAAACG+GGG 0.712928 tig0033666:+32864 Msa1452120:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AACTATATACAAAATGAATT+AGG - tig0033666:33546-33565 None:intergenic 15.0%
!!! TTTTGTATATAGTTTTTTCT+AGG + tig0033666:33552-33571 Msa1452120:intron 15.0%
!! AACTATATACAAAATGAATT+AGG - tig0033666:33546-33565 None:intergenic 15.0%
!!! TTTTGTATATAGTTTTTTCT+AGG + tig0033666:33552-33571 Msa1452120:intron 15.0%
!! TTATACTTGAAGTTAGAAAT+TGG + tig0033666:33312-33331 Msa1452120:intron 20.0%
!! AAAAGGTAATTTCATTAGTT+TGG - tig0033666:33718-33737 None:intergenic 20.0%
!! TGATAGGATTATAGAATAAA+GGG + tig0033666:33747-33766 Msa1452120:intron 20.0%
!!! TTTGTTGTATTTTCTGTTAT+AGG + tig0033666:33890-33909 Msa1452120:intron 20.0%
!! TTATACTTGAAGTTAGAAAT+TGG + tig0033666:33312-33331 Msa1452120:intron 20.0%
!! AAAAGGTAATTTCATTAGTT+TGG - tig0033666:33718-33737 None:intergenic 20.0%
!! TGATAGGATTATAGAATAAA+GGG + tig0033666:33747-33766 Msa1452120:intron 20.0%
!!! TTTGTTGTATTTTCTGTTAT+AGG + tig0033666:33890-33909 Msa1452120:intron 20.0%
!!! TGTTTTTGTTTGTGTTTGAA+TGG + tig0033666:32644-32663 Msa1452120:intron 25.0%
!!! TTGGATTAGAAATTTTTGCA+GGG + tig0033666:32688-32707 Msa1452120:intron 25.0%
! ACAAGAATAATGTCGATATT+AGG + tig0033666:32767-32786 Msa1452120:CDS 25.0%
! CAAGAATAATGTCGATATTA+GGG + tig0033666:32768-32787 Msa1452120:CDS 25.0%
!!! CATACACATTTTTTACCATT+TGG - tig0033666:33063-33082 None:intergenic 25.0%
! TCAAGTATAATCAATTCTTG+AGG - tig0033666:33302-33321 None:intergenic 25.0%
! AATTGATTATGGCTAAAAGT+GGG - tig0033666:33432-33451 None:intergenic 25.0%
!!! GATTTTGAGTGAATTGATTA+TGG - tig0033666:33443-33462 None:intergenic 25.0%
!! TAATGAAATTACCTTTTGAC+AGG + tig0033666:33721-33740 Msa1452120:intron 25.0%
! GTGATAGGATTATAGAATAA+AGG + tig0033666:33746-33765 Msa1452120:intron 25.0%
! AGTTATCTATTTAGTTAGCA+AGG + tig0033666:33816-33835 Msa1452120:intron 25.0%
!! TACAAAGAGACATTGATAAT+GGG - tig0033666:33936-33955 None:intergenic 25.0%
! TTACAAAGAGACATTGATAA+TGG - tig0033666:33937-33956 None:intergenic 25.0%
!!! TGTTTTTGTTTGTGTTTGAA+TGG + tig0033666:32644-32663 Msa1452120:intron 25.0%
!!! TTGGATTAGAAATTTTTGCA+GGG + tig0033666:32688-32707 Msa1452120:intron 25.0%
! ACAAGAATAATGTCGATATT+AGG + tig0033666:32767-32786 Msa1452120:CDS 25.0%
! CAAGAATAATGTCGATATTA+GGG + tig0033666:32768-32787 Msa1452120:CDS 25.0%
!!! CATACACATTTTTTACCATT+TGG - tig0033666:33063-33082 None:intergenic 25.0%
! TCAAGTATAATCAATTCTTG+AGG - tig0033666:33302-33321 None:intergenic 25.0%
! AATTGATTATGGCTAAAAGT+GGG - tig0033666:33432-33451 None:intergenic 25.0%
!!! GATTTTGAGTGAATTGATTA+TGG - tig0033666:33443-33462 None:intergenic 25.0%
!! TAATGAAATTACCTTTTGAC+AGG + tig0033666:33721-33740 Msa1452120:intron 25.0%
! GTGATAGGATTATAGAATAA+AGG + tig0033666:33746-33765 Msa1452120:intron 25.0%
! AGTTATCTATTTAGTTAGCA+AGG + tig0033666:33816-33835 Msa1452120:intron 25.0%
!! TACAAAGAGACATTGATAAT+GGG - tig0033666:33936-33955 None:intergenic 25.0%
! TTACAAAGAGACATTGATAA+TGG - tig0033666:33937-33956 None:intergenic 25.0%
!! GTTGGATTAGAAATTTTTGC+AGG + tig0033666:32687-32706 Msa1452120:intron 30.0%
! ATTAGAAATTTTTGCAGGGT+GGG + tig0033666:32692-32711 Msa1452120:intron 30.0%
AATAATGTCGATATTAGGGT+TGG + tig0033666:32772-32791 Msa1452120:CDS 30.0%
TTCAATCAGAGATCAAAATC+AGG + tig0033666:32897-32916 Msa1452120:CDS 30.0%
GATCAAAATCAGGTGAATAA+CGG + tig0033666:32907-32926 Msa1452120:CDS 30.0%
! TCACATTCAGATCTTTGTTT+GGG - tig0033666:33023-33042 None:intergenic 30.0%
TTCACATTCAGATCTTTGTT+TGG - tig0033666:33024-33043 None:intergenic 30.0%
GATCTGAATGTGAATTTCAA+TGG + tig0033666:33030-33049 Msa1452120:CDS 30.0%
AAAACTGCGAAAGTCTATAT+TGG - tig0033666:33097-33116 None:intergenic 30.0%
!! TGACTTCAAATGTTGATTCA+TGG + tig0033666:33150-33169 Msa1452120:intron 30.0%
!! TTCAAATGTTGATTCATGGA+GGG + tig0033666:33154-33173 Msa1452120:intron 30.0%
!! TACACCTCTAGAATCAAATT+CGG - tig0033666:33232-33251 None:intergenic 30.0%
! AGAATTGACTCTTACATGTT+TGG + tig0033666:33251-33270 Msa1452120:intron 30.0%
AAGGTAAAGTGATTTATGGT+TGG - tig0033666:33406-33425 None:intergenic 30.0%
GTTGAAGGTAAAGTGATTTA+TGG - tig0033666:33410-33429 None:intergenic 30.0%
GAATTGATTATGGCTAAAAG+TGG - tig0033666:33433-33452 None:intergenic 30.0%
! TGAACTTGTTTGCATAACAA+GGG - tig0033666:33626-33645 None:intergenic 30.0%
! ATGAACTTGTTTGCATAACA+AGG - tig0033666:33627-33646 None:intergenic 30.0%
AAGGTAGTTAGCTAAAGTTA+AGG + tig0033666:33835-33854 Msa1452120:intron 30.0%
!! GTTGGATTAGAAATTTTTGC+AGG + tig0033666:32687-32706 Msa1452120:intron 30.0%
! ATTAGAAATTTTTGCAGGGT+GGG + tig0033666:32692-32711 Msa1452120:intron 30.0%
AATAATGTCGATATTAGGGT+TGG + tig0033666:32772-32791 Msa1452120:CDS 30.0%
TTCAATCAGAGATCAAAATC+AGG + tig0033666:32897-32916 Msa1452120:CDS 30.0%
GATCAAAATCAGGTGAATAA+CGG + tig0033666:32907-32926 Msa1452120:CDS 30.0%
! TCACATTCAGATCTTTGTTT+GGG - tig0033666:33023-33042 None:intergenic 30.0%
TTCACATTCAGATCTTTGTT+TGG - tig0033666:33024-33043 None:intergenic 30.0%
GATCTGAATGTGAATTTCAA+TGG + tig0033666:33030-33049 Msa1452120:CDS 30.0%
AAAACTGCGAAAGTCTATAT+TGG - tig0033666:33097-33116 None:intergenic 30.0%
!! TGACTTCAAATGTTGATTCA+TGG + tig0033666:33150-33169 Msa1452120:intron 30.0%
!! TTCAAATGTTGATTCATGGA+GGG + tig0033666:33154-33173 Msa1452120:intron 30.0%
!! TACACCTCTAGAATCAAATT+CGG - tig0033666:33232-33251 None:intergenic 30.0%
! AGAATTGACTCTTACATGTT+TGG + tig0033666:33251-33270 Msa1452120:intron 30.0%
AAGGTAAAGTGATTTATGGT+TGG - tig0033666:33406-33425 None:intergenic 30.0%
GTTGAAGGTAAAGTGATTTA+TGG - tig0033666:33410-33429 None:intergenic 30.0%
GAATTGATTATGGCTAAAAG+TGG - tig0033666:33433-33452 None:intergenic 30.0%
! TGAACTTGTTTGCATAACAA+GGG - tig0033666:33626-33645 None:intergenic 30.0%
! ATGAACTTGTTTGCATAACA+AGG - tig0033666:33627-33646 None:intergenic 30.0%
AAGGTAGTTAGCTAAAGTTA+AGG + tig0033666:33835-33854 Msa1452120:intron 30.0%
AAATGCTTACCAAGAGAATC+CGG - tig0033666:32573-32592 None:intergenic 35.0%
TGTTTGTGTTTGAATGGTGA+AGG + tig0033666:32650-32669 Msa1452120:intron 35.0%
! AAGGAGTGCATATTTGAAGT+TGG + tig0033666:32669-32688 Msa1452120:intron 35.0%
! GATTAGAAATTTTTGCAGGG+TGG + tig0033666:32691-32710 Msa1452120:intron 35.0%
GGTTGGAGAAACAGTTATTA+GGG + tig0033666:32789-32808 Msa1452120:CDS 35.0%
!! AGTTTTTGAGGACAACTCAT+GGG + tig0033666:32947-32966 Msa1452120:CDS 35.0%
ATTGGGATTGTGATTGGAAT+TGG + tig0033666:32986-33005 Msa1452120:CDS 35.0%
TTGGGATTGTGATTGGAATT+GGG + tig0033666:32987-33006 Msa1452120:CDS 35.0%
!! CTTCAAATGTTGATTCATGG+AGG + tig0033666:33153-33172 Msa1452120:intron 35.0%
!! TCTCTGGTTTCACTTTTAGA+GGG + tig0033666:33205-33224 Msa1452120:intron 35.0%
AAAGTGATTATGTGCACGTT+AGG - tig0033666:33485-33504 None:intergenic 35.0%
CTTATTGTGCAAGCTATGTA+TGG + tig0033666:33584-33603 Msa1452120:intron 35.0%
GCTATGTATGGCCAAAAAAT+TGG + tig0033666:33596-33615 Msa1452120:intron 35.0%
CAAACAAGTTCATACAAGCT+TGG + tig0033666:33634-33653 Msa1452120:intron 35.0%
ACAAGAGACAGAGAGAATAA+GGG - tig0033666:33664-33683 None:intergenic 35.0%
AACAAGAGACAGAGAGAATA+AGG - tig0033666:33665-33684 None:intergenic 35.0%
!! TTGTTTGAGTTGAGTGTTTG+TGG + tig0033666:33680-33699 Msa1452120:intron 35.0%
! CTGTTATAGGTTAGTTGCTA+TGG + tig0033666:33903-33922 Msa1452120:intron 35.0%
!! AGAGACATTGATAATGGGTA+AGG - tig0033666:33931-33950 None:intergenic 35.0%
AAATGCTTACCAAGAGAATC+CGG - tig0033666:32573-32592 None:intergenic 35.0%
TGTTTGTGTTTGAATGGTGA+AGG + tig0033666:32650-32669 Msa1452120:intron 35.0%
! AAGGAGTGCATATTTGAAGT+TGG + tig0033666:32669-32688 Msa1452120:intron 35.0%
! GATTAGAAATTTTTGCAGGG+TGG + tig0033666:32691-32710 Msa1452120:intron 35.0%
GGTTGGAGAAACAGTTATTA+GGG + tig0033666:32789-32808 Msa1452120:CDS 35.0%
!! AGTTTTTGAGGACAACTCAT+GGG + tig0033666:32947-32966 Msa1452120:CDS 35.0%
ATTGGGATTGTGATTGGAAT+TGG + tig0033666:32986-33005 Msa1452120:CDS 35.0%
TTGGGATTGTGATTGGAATT+GGG + tig0033666:32987-33006 Msa1452120:CDS 35.0%
!! CTTCAAATGTTGATTCATGG+AGG + tig0033666:33153-33172 Msa1452120:intron 35.0%
!! TCTCTGGTTTCACTTTTAGA+GGG + tig0033666:33205-33224 Msa1452120:intron 35.0%
AAAGTGATTATGTGCACGTT+AGG - tig0033666:33485-33504 None:intergenic 35.0%
CTTATTGTGCAAGCTATGTA+TGG + tig0033666:33584-33603 Msa1452120:intron 35.0%
GCTATGTATGGCCAAAAAAT+TGG + tig0033666:33596-33615 Msa1452120:intron 35.0%
CAAACAAGTTCATACAAGCT+TGG + tig0033666:33634-33653 Msa1452120:intron 35.0%
ACAAGAGACAGAGAGAATAA+GGG - tig0033666:33664-33683 None:intergenic 35.0%
AACAAGAGACAGAGAGAATA+AGG - tig0033666:33665-33684 None:intergenic 35.0%
!! TTGTTTGAGTTGAGTGTTTG+TGG + tig0033666:33680-33699 Msa1452120:intron 35.0%
! CTGTTATAGGTTAGTTGCTA+TGG + tig0033666:33903-33922 Msa1452120:intron 35.0%
!! AGAGACATTGATAATGGGTA+AGG - tig0033666:33931-33950 None:intergenic 35.0%
GGATGGAGGATGATAAGAAA+AGG + tig0033666:32713-32732 Msa1452120:CDS 40.0%
GGGTTGGAGAAACAGTTATT+AGG + tig0033666:32788-32807 Msa1452120:CDS 40.0%
TCTTCTAGTGAACGATGCTA+AGG + tig0033666:32819-32838 Msa1452120:CDS 40.0%
CGAGCATGCTAATATTTCAG+AGG + tig0033666:32843-32862 Msa1452120:CDS 40.0%
TGCTAATATTTCAGAGGCTG+TGG + tig0033666:32849-32868 Msa1452120:CDS 40.0%
TCAGGTGAATAACGGTAAAG+AGG + tig0033666:32915-32934 Msa1452120:CDS 40.0%
! AGGATTCTGCTGAGTTTTTG+AGG + tig0033666:32935-32954 Msa1452120:CDS 40.0%
!! GAGTTTTTGAGGACAACTCA+TGG + tig0033666:32946-32965 Msa1452120:CDS 40.0%
TTCAATGGACATCTGCCAAA+TGG + tig0033666:33045-33064 Msa1452120:CDS 40.0%
! CGAAAGTCTATATTGGTTGG+AGG - tig0033666:33090-33109 None:intergenic 40.0%
CTGCGAAAGTCTATATTGGT+TGG - tig0033666:33093-33112 None:intergenic 40.0%
CAGAGACATACACATAGCTA+GGG - tig0033666:33191-33210 None:intergenic 40.0%
!! GTCTCTGGTTTCACTTTTAG+AGG + tig0033666:33204-33223 Msa1452120:intron 40.0%
!! CTCTGGTTTCACTTTTAGAG+GGG + tig0033666:33206-33225 Msa1452120:intron 40.0%
!! TATGGCTAAAAGTGGGTTGA+AGG - tig0033666:33425-33444 None:intergenic 40.0%
!!! ACAAGGGAGGTCCAATTTTT+TGG - tig0033666:33610-33629 None:intergenic 40.0%
ACTTGTTTGCATAACAAGGG+AGG - tig0033666:33623-33642 None:intergenic 40.0%
! ACCTTTTGACAGGATGTGAT+AGG + tig0033666:33731-33750 Msa1452120:intron 40.0%
TCCTATCACATCCTGTCAAA+AGG - tig0033666:33735-33754 None:intergenic 40.0%
GGATGGAGGATGATAAGAAA+AGG + tig0033666:32713-32732 Msa1452120:CDS 40.0%
GGGTTGGAGAAACAGTTATT+AGG + tig0033666:32788-32807 Msa1452120:CDS 40.0%
TCTTCTAGTGAACGATGCTA+AGG + tig0033666:32819-32838 Msa1452120:CDS 40.0%
CGAGCATGCTAATATTTCAG+AGG + tig0033666:32843-32862 Msa1452120:CDS 40.0%
TGCTAATATTTCAGAGGCTG+TGG + tig0033666:32849-32868 Msa1452120:CDS 40.0%
TCAGGTGAATAACGGTAAAG+AGG + tig0033666:32915-32934 Msa1452120:CDS 40.0%
! AGGATTCTGCTGAGTTTTTG+AGG + tig0033666:32935-32954 Msa1452120:CDS 40.0%
!! GAGTTTTTGAGGACAACTCA+TGG + tig0033666:32946-32965 Msa1452120:CDS 40.0%
TTCAATGGACATCTGCCAAA+TGG + tig0033666:33045-33064 Msa1452120:CDS 40.0%
! CGAAAGTCTATATTGGTTGG+AGG - tig0033666:33090-33109 None:intergenic 40.0%
CTGCGAAAGTCTATATTGGT+TGG - tig0033666:33093-33112 None:intergenic 40.0%
CAGAGACATACACATAGCTA+GGG - tig0033666:33191-33210 None:intergenic 40.0%
!! GTCTCTGGTTTCACTTTTAG+AGG + tig0033666:33204-33223 Msa1452120:intron 40.0%
!! CTCTGGTTTCACTTTTAGAG+GGG + tig0033666:33206-33225 Msa1452120:intron 40.0%
!! TATGGCTAAAAGTGGGTTGA+AGG - tig0033666:33425-33444 None:intergenic 40.0%
!!! ACAAGGGAGGTCCAATTTTT+TGG - tig0033666:33610-33629 None:intergenic 40.0%
ACTTGTTTGCATAACAAGGG+AGG - tig0033666:33623-33642 None:intergenic 40.0%
! ACCTTTTGACAGGATGTGAT+AGG + tig0033666:33731-33750 Msa1452120:intron 40.0%
TCCTATCACATCCTGTCAAA+AGG - tig0033666:33735-33754 None:intergenic 40.0%
! AATGAAACGGTGAAGGGTGT+TGG - tig0033666:32527-32546 None:intergenic 45.0%
! GAAATTTTTGCAGGGTGGGA+TGG + tig0033666:32696-32715 Msa1452120:intron 45.0%
GAGGCTGTGGTGAATTCAAA+CGG + tig0033666:32862-32881 Msa1452120:CDS 45.0%
AGGCTGTGGTGAATTCAAAC+GGG + tig0033666:32863-32882 Msa1452120:CDS 45.0%
GCAAAGTGTGAGTGAGGATT+GGG + tig0033666:32969-32988 Msa1452120:CDS 45.0%
GTGAGGATTGGGATTGTGAT+TGG + tig0033666:32980-32999 Msa1452120:CDS 45.0%
TGATTGGAATTGGGATGCAG+AGG + tig0033666:32996-33015 Msa1452120:CDS 45.0%
CCAGAGACATACACATAGCT+AGG - tig0033666:33192-33211 None:intergenic 45.0%
CCTAGCTATGTGTATGTCTC+TGG + tig0033666:33189-33208 Msa1452120:intron 45.0%
! AATGAAACGGTGAAGGGTGT+TGG - tig0033666:32527-32546 None:intergenic 45.0%
! GAAATTTTTGCAGGGTGGGA+TGG + tig0033666:32696-32715 Msa1452120:intron 45.0%
GAGGCTGTGGTGAATTCAAA+CGG + tig0033666:32862-32881 Msa1452120:CDS 45.0%
AGGCTGTGGTGAATTCAAAC+GGG + tig0033666:32863-32882 Msa1452120:CDS 45.0%
GCAAAGTGTGAGTGAGGATT+GGG + tig0033666:32969-32988 Msa1452120:CDS 45.0%
GTGAGGATTGGGATTGTGAT+TGG + tig0033666:32980-32999 Msa1452120:CDS 45.0%
TGATTGGAATTGGGATGCAG+AGG + tig0033666:32996-33015 Msa1452120:CDS 45.0%
CCAGAGACATACACATAGCT+AGG - tig0033666:33192-33211 None:intergenic 45.0%
CCTAGCTATGTGTATGTCTC+TGG + tig0033666:33189-33208 Msa1452120:intron 45.0%
GCGACGAATGAAACGGTGAA+GGG - tig0033666:32533-32552 None:intergenic 50.0%
!! GGTGTTGGCGACGAATGAAA+CGG - tig0033666:32540-32559 None:intergenic 50.0%
AGAGAATCCGGAGAGCTTGT+TGG - tig0033666:32561-32580 None:intergenic 50.0%
ACAAGCTCTCCGGATTCTCT+TGG + tig0033666:32561-32580 Msa1452120:CDS 50.0%
! ATTTTTGCAGGGTGGGATGG+AGG + tig0033666:32699-32718 Msa1452120:intron 50.0%
GGCTGTGGTGAATTCAAACG+GGG + tig0033666:32864-32883 Msa1452120:CDS 50.0%
GTGGTGAATTCAAACGGGGA+TGG + tig0033666:32868-32887 Msa1452120:CDS 50.0%
TCATGGGCAAAGTGTGAGTG+AGG + tig0033666:32963-32982 Msa1452120:CDS 50.0%
GGCAAAGTGTGAGTGAGGAT+TGG + tig0033666:32968-32987 Msa1452120:CDS 50.0%
GGGGCCGAATTTGATTCTAG+AGG + tig0033666:33225-33244 Msa1452120:intron 50.0%
GCGACGAATGAAACGGTGAA+GGG - tig0033666:32533-32552 None:intergenic 50.0%
!! GGTGTTGGCGACGAATGAAA+CGG - tig0033666:32540-32559 None:intergenic 50.0%
AGAGAATCCGGAGAGCTTGT+TGG - tig0033666:32561-32580 None:intergenic 50.0%
ACAAGCTCTCCGGATTCTCT+TGG + tig0033666:32561-32580 Msa1452120:CDS 50.0%
! ATTTTTGCAGGGTGGGATGG+AGG + tig0033666:32699-32718 Msa1452120:intron 50.0%
GGCTGTGGTGAATTCAAACG+GGG + tig0033666:32864-32883 Msa1452120:CDS 50.0%
GTGGTGAATTCAAACGGGGA+TGG + tig0033666:32868-32887 Msa1452120:CDS 50.0%
TCATGGGCAAAGTGTGAGTG+AGG + tig0033666:32963-32982 Msa1452120:CDS 50.0%
GGCAAAGTGTGAGTGAGGAT+TGG + tig0033666:32968-32987 Msa1452120:CDS 50.0%
GGGGCCGAATTTGATTCTAG+AGG + tig0033666:33225-33244 Msa1452120:intron 50.0%
GGCGACGAATGAAACGGTGA+AGG - tig0033666:32534-32553 None:intergenic 55.0%
GCCAACACCAACAAGCTCTC+CGG + tig0033666:32551-32570 Msa1452120:CDS 55.0%
!! TCCGGAGAGCTTGTTGGTGT+TGG - tig0033666:32555-32574 None:intergenic 55.0%
GGCGACGAATGAAACGGTGA+AGG - tig0033666:32534-32553 None:intergenic 55.0%
GCCAACACCAACAAGCTCTC+CGG + tig0033666:32551-32570 Msa1452120:CDS 55.0%
!! TCCGGAGAGCTTGTTGGTGT+TGG - tig0033666:32555-32574 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
tig0033666 gene 32487 33956 32487 ID=Msa1452120;Name=Msa1452120
tig0033666 mRNA 32487 33956 32487 ID=Msa1452120-mRNA-1;Parent=Msa1452120;Name=Msa1452120-mRNA-1;_AED=0.20;_eAED=0.20;_QI=0|0.5|0|0.66|0.5|0.33|3|0|169
tig0033666 exon 32487 32582 32487 ID=Msa1452120-mRNA-1:exon:18395;Parent=Msa1452120-mRNA-1
tig0033666 exon 32709 33077 32709 ID=Msa1452120-mRNA-1:exon:18396;Parent=Msa1452120-mRNA-1
tig0033666 exon 33912 33956 33912 ID=Msa1452120-mRNA-1:exon:18397;Parent=Msa1452120-mRNA-1
tig0033666 CDS 32487 32582 32487 ID=Msa1452120-mRNA-1:cds;Parent=Msa1452120-mRNA-1
tig0033666 CDS 32709 33077 32709 ID=Msa1452120-mRNA-1:cds;Parent=Msa1452120-mRNA-1
tig0033666 CDS 33912 33956 33912 ID=Msa1452120-mRNA-1:cds;Parent=Msa1452120-mRNA-1
Gene Sequence

>Msa1452120

TTTTTTTTAACAAAATCTCTTCACACTCACTATAACTCCAACACCCTTCACCGTTTCATTCGTCGCCAACACCAACAAGCTCTCCGGATTCTCTTGGGTGGGATGGAGGATGATAAGAAAAGGAGAAAAAACAAGAAGAAAAAGAACAAGCAAAACAAGAATAATGTCGATATTAGGGTTGGAGAAACAGTTATTAGGGATCATAATCTTCTAGTGAACGATGCTAAGGACGAGCATGCTAATATTTCAGAGGCTGTGGTGAATTCAAACGGGGATGGAGAAAGTTCAATCAGAGATCAAAATCAGGTGAATAACGGTAAAGAGGATTCTGCTGAGTTTTTGAGGACAACTCATGGGCAAAGTGTGAGTGAGGATTGGGATTGTGATTGGAATTGGGATGCAGAGGTCCCAAACAAAGATCTGAATGTGAATTTCAATGGACATCTGCCAAATGGTAAAAAATGTGTTAGTTGCTATGGATCCTTACCCATTATCAATGTCTCTTTGTAA

Protein sequence

>Msa1452120

FFLTKSLHTHYNSNTLHRFIRRQHQQALRILLGGMEDDKKRRKNKKKKNKQNKNNVDIRVGETVIRDHNLLVNDAKDEHANISEAVVNSNGDGESSIRDQNQVNNGKEDSAEFLRTTHGQSVSEDWDCDWNWDAEVPNKDLNVNFNGHLPNGKKCVSCYGSLPIINVSL*