AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0698490


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0698490 MtrunA17_Chr4g0065831 100.000 130 0 0 1 130 1 130 8.31e-94 266
Msa0698490 MtrunA17_Chr4g0051921 99.231 130 1 0 1 130 1 130 2.23e-93 265
Msa0698490 MtrunA17_Chr1g0205971 99.231 130 1 0 1 130 1 130 2.23e-93 265
Msa0698490 MtrunA17_Chr8g0389371 52.000 125 60 0 6 130 5 129 1.43e-45 144
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0698490 AT5G59850.1 99.231 130 1 0 1 130 1 130 1.84e-93 265
Msa0698490 AT1G07770.2 99.231 130 1 0 1 130 1 130 1.84e-93 265
Msa0698490 AT1G07770.3 99.231 130 1 0 1 130 1 130 1.84e-93 265
Msa0698490 AT1G07770.1 99.231 130 1 0 1 130 1 130 1.84e-93 265
Msa0698490 AT3G46040.1 97.692 130 3 0 1 130 1 130 4.20e-92 262
Msa0698490 AT2G39590.1 91.538 130 11 0 1 130 1 130 4.49e-87 249
Msa0698490 AT4G29430.1 54.400 125 57 0 6 130 5 129 3.10e-47 149
Msa0698490 AT2G19720.1 53.600 125 58 0 6 130 5 129 3.24e-45 144

Find 45 sgRNAs with CRISPR-Local

Find 294 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGTAAGCTAAATTGAATTT+TGG 0.179131 4_4:+68860945 Msa0698490:three_prime_UTR
CACTGTCTCAACGCAGAATT+AGG 0.187245 4_4:-68858920 None:intergenic
GAAATTTGTAACAGCAAATA+TGG 0.239649 4_4:+68859057 Msa0698490:intron
TTTACATGGATATTGTAATA+TGG 0.280818 4_4:+68860911 Msa0698490:three_prime_UTR
GGATTAACGAAAGAATAATT+TGG 0.282896 4_4:-68861031 None:intergenic
TGGGTAAACTATTGTGCTCT+TGG 0.338767 4_4:+68860965 Msa0698490:three_prime_UTR
CTTGTGGTTATAGGATATAT+TGG 0.379495 4_4:+68859288 Msa0698490:intron
GGGTTACGGAAGCCTCAAAA+TGG 0.386846 4_4:-68858899 None:intergenic
GACTACCTCTGCTGGTATCA+TGG 0.414748 4_4:+68860759 Msa0698490:CDS
AATCCATTTGTCATGATGAA+TGG 0.432930 4_4:+68861049 Msa0698490:three_prime_UTR
TATTGTAATATGGATTACTT+AGG 0.434075 4_4:+68860921 Msa0698490:three_prime_UTR
ATTAGTCCTCGTTTCGATGT+TGG 0.460967 4_4:+68859390 Msa0698490:CDS
GCACAAGCACACAATTTCTC+TGG 0.472256 4_4:+68858954 Msa0698490:five_prime_UTR
AGGCCATTCATCATGACAAA+TGG 0.479914 4_4:-68861052 None:intergenic
AAAATTGTTGTGGAATTGAA+TGG 0.479932 4_4:+68859345 Msa0698490:CDS
TACGTTGATGATCACAGGTC+TGG 0.486815 4_4:+68859321 Msa0698490:CDS
AATGTTGGTGGTAAAGTGTT+GGG 0.506719 4_4:+68860805 Msa0698490:CDS
ACTGTCTCAACGCAGAATTA+GGG 0.523684 4_4:-68858919 None:intergenic
AGATTGAAGGATGGACTGCT+AGG 0.524175 4_4:+68859421 Msa0698490:CDS
AGGATGGCCTAATCATAACT+TGG 0.529437 4_4:-68859144 None:intergenic
GGAAGCGCCAAGTTATGATT+AGG 0.530843 4_4:+68859137 Msa0698490:CDS
ATTGTCTTGACTACCTCTGC+TGG 0.534592 4_4:+68860751 Msa0698490:CDS
GAATGTTGGTGGTAAAGTGT+TGG 0.537027 4_4:+68860804 Msa0698490:CDS
TCGAATACGTTGATGATCAC+AGG 0.543527 4_4:+68859316 Msa0698490:CDS
TCAACGCAGAATTAGGGTTA+CGG 0.543710 4_4:-68858913 None:intergenic
TCAAACTTGGTATGCTCTAG+AGG 0.550935 4_4:-68861075 None:intergenic
GCTAGGAGAAAGAATGTTGG+TGG 0.567141 4_4:+68860793 Msa0698490:CDS
GATGTTGCAGAACTCAAACT+TGG 0.567526 4_4:-68861088 None:intergenic
TTGTAACAGCAAATATGGTG+AGG 0.575157 4_4:+68859062 Msa0698490:intron
TAGGCTTCTTCCCTCAAGAC+AGG 0.576488 4_4:+68859440 Msa0698490:CDS
TGTAACAGCAAATATGGTGA+GGG 0.583163 4_4:+68859063 Msa0698490:intron
GAGGCTAGGAGAAAGAATGT+TGG 0.584494 4_4:+68860790 Msa0698490:CDS
TCATGGATCATGAAGAGGCT+AGG 0.585008 4_4:+68860776 Msa0698490:CDS
ATGTACAATGCTGAGAAACG+TGG 0.619087 4_4:+68859115 Msa0698490:CDS
GTTGGTGTCAAAGAGATTGA+AGG 0.620427 4_4:+68859408 Msa0698490:CDS
CTTATCGTCATGCAAAAGCA+TGG 0.625917 4_4:+68859187 Msa0698490:CDS
CAGGTCTGGCAAAATTGTTG+TGG 0.629911 4_4:+68859335 Msa0698490:CDS
AATGGAAGATTGAATAAGTG+TGG 0.630140 4_4:+68859363 Msa0698490:CDS
AGAGAAATTGTGTGCTTGTG+CGG 0.632079 4_4:-68858952 None:intergenic
TGGTATCATGGATCATGAAG+AGG 0.639197 4_4:+68860771 Msa0698490:CDS
ATGATCCATGATACCAGCAG+AGG 0.644078 4_4:-68860764 None:intergenic
GTGTCAAAGAGATTGAAGGA+TGG 0.661917 4_4:+68859412 Msa0698490:CDS
AACTTGGTATGCTCTAGAGG+AGG 0.662737 4_4:-68861072 None:intergenic
TGTACAATGCTGAGAAACGT+GGG 0.665211 4_4:+68859116 Msa0698490:CDS
TTGACACCAACATCGAAACG+AGG 0.688564 4_4:-68859396 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CTAATTATTCTTTTATTTAT+TGG + chr4_4:68860314-68860333 Msa0698490:intron 10.0%
!!! CTAATTATTCTTTTATTTAT+TGG + chr4_4:68860314-68860333 Msa0698490:intron 10.0%
!! AAATTATAAAAACAGCTTAT+AGG + chr4_4:68859675-68859694 Msa0698490:intron 15.0%
!! ATAAAACACAAACTTAATTA+GGG - chr4_4:68859828-68859847 None:intergenic 15.0%
!! TATAAAACACAAACTTAATT+AGG - chr4_4:68859829-68859848 None:intergenic 15.0%
!!! ATTTTCTTATTATGCTTTTA+TGG + chr4_4:68860238-68860257 Msa0698490:intron 15.0%
!!! TTTTCTTATTATGCTTTTAT+GGG + chr4_4:68860239-68860258 Msa0698490:intron 15.0%
!! AAAGAAAAACTAATAGTTAA+AGG + chr4_4:68860535-68860554 Msa0698490:intron 15.0%
!! AAGAAAAACTAATAGTTAAA+GGG + chr4_4:68860536-68860555 Msa0698490:intron 15.0%
!!! ATTCAGTTTTTTTTTTTACA+TGG + chr4_4:68860897-68860916 Msa0698490:three_prime_UTR 15.0%
!! AAATTATAAAAACAGCTTAT+AGG + chr4_4:68859675-68859694 Msa0698490:intron 15.0%
!! ATAAAACACAAACTTAATTA+GGG - chr4_4:68859828-68859847 None:intergenic 15.0%
!! TATAAAACACAAACTTAATT+AGG - chr4_4:68859829-68859848 None:intergenic 15.0%
!!! ATTTTCTTATTATGCTTTTA+TGG + chr4_4:68860238-68860257 Msa0698490:intron 15.0%
!!! TTTTCTTATTATGCTTTTAT+GGG + chr4_4:68860239-68860258 Msa0698490:intron 15.0%
!! AAAGAAAAACTAATAGTTAA+AGG + chr4_4:68860535-68860554 Msa0698490:intron 15.0%
!! AAGAAAAACTAATAGTTAAA+GGG + chr4_4:68860536-68860555 Msa0698490:intron 15.0%
!!! ATTCAGTTTTTTTTTTTACA+TGG + chr4_4:68860897-68860916 Msa0698490:three_prime_UTR 15.0%
!! CAAAAGCAAATAAATTAGAA+AGG - chr4_4:68859963-68859982 None:intergenic 20.0%
!!! CTTTCTAATTTATTTGCTTT+TGG + chr4_4:68859961-68859980 Msa0698490:intron 20.0%
!!! TCATGAATCATTTTTAATGA+TGG + chr4_4:68860176-68860195 Msa0698490:intron 20.0%
!! TAAATTCAAACCGTTATTAA+TGG + chr4_4:68860205-68860224 Msa0698490:intron 20.0%
!!! TTTCTTATTATGCTTTTATG+GGG + chr4_4:68860240-68860259 Msa0698490:intron 20.0%
!! AAATAAAAGAATAATTAGCG+AGG - chr4_4:68860312-68860331 None:intergenic 20.0%
!! AAAATATTAAAAGATGGGAT+GGG - chr4_4:68860400-68860419 None:intergenic 20.0%
!! TAAAATATTAAAAGATGGGA+TGG - chr4_4:68860401-68860420 None:intergenic 20.0%
!! AATTGAATAATTGTTGCAAA+AGG - chr4_4:68860448-68860467 None:intergenic 20.0%
!! AGAAAAACTAATAGTTAAAG+GGG + chr4_4:68860537-68860556 Msa0698490:intron 20.0%
!! ACAAAGTATATAAAGATTGT+CGG - chr4_4:68860573-68860592 None:intergenic 20.0%
!! TTTACATGGATATTGTAATA+TGG + chr4_4:68860911-68860930 Msa0698490:three_prime_UTR 20.0%
!!! TATTGTAATATGGATTACTT+AGG + chr4_4:68860921-68860940 Msa0698490:three_prime_UTR 20.0%
!!! TTGTAAGCTAAATTGAATTT+TGG + chr4_4:68860945-68860964 Msa0698490:three_prime_UTR 20.0%
!!! TGTAAGCTAAATTGAATTTT+GGG + chr4_4:68860946-68860965 Msa0698490:three_prime_UTR 20.0%
!! CAAAAGCAAATAAATTAGAA+AGG - chr4_4:68859963-68859982 None:intergenic 20.0%
!!! CTTTCTAATTTATTTGCTTT+TGG + chr4_4:68859961-68859980 Msa0698490:intron 20.0%
!!! TCATGAATCATTTTTAATGA+TGG + chr4_4:68860176-68860195 Msa0698490:intron 20.0%
!! TAAATTCAAACCGTTATTAA+TGG + chr4_4:68860205-68860224 Msa0698490:intron 20.0%
!!! TTTCTTATTATGCTTTTATG+GGG + chr4_4:68860240-68860259 Msa0698490:intron 20.0%
!! AAATAAAAGAATAATTAGCG+AGG - chr4_4:68860312-68860331 None:intergenic 20.0%
!! AAAATATTAAAAGATGGGAT+GGG - chr4_4:68860400-68860419 None:intergenic 20.0%
!! TAAAATATTAAAAGATGGGA+TGG - chr4_4:68860401-68860420 None:intergenic 20.0%
!! AATTGAATAATTGTTGCAAA+AGG - chr4_4:68860448-68860467 None:intergenic 20.0%
!! AGAAAAACTAATAGTTAAAG+GGG + chr4_4:68860537-68860556 Msa0698490:intron 20.0%
!! ACAAAGTATATAAAGATTGT+CGG - chr4_4:68860573-68860592 None:intergenic 20.0%
!! TTTACATGGATATTGTAATA+TGG + chr4_4:68860911-68860930 Msa0698490:three_prime_UTR 20.0%
!!! TATTGTAATATGGATTACTT+AGG + chr4_4:68860921-68860940 Msa0698490:three_prime_UTR 20.0%
!!! TTGTAAGCTAAATTGAATTT+TGG + chr4_4:68860945-68860964 Msa0698490:three_prime_UTR 20.0%
!!! TGTAAGCTAAATTGAATTTT+GGG + chr4_4:68860946-68860965 Msa0698490:three_prime_UTR 20.0%
!! ATCGAATAAAAACCATTTTG+AGG + chr4_4:68858887-68858906 Msa0698490:five_prime_UTR 25.0%
! GAAATTTGTAACAGCAAATA+TGG + chr4_4:68859057-68859076 Msa0698490:intron 25.0%
!!! GAATTTGATAATCACTTTTG+AGG - chr4_4:68859167-68859186 None:intergenic 25.0%
! TGATATATTGTATACTCTTG+TGG + chr4_4:68859272-68859291 Msa0698490:intron 25.0%
! AAAATTGTTGTGGAATTGAA+TGG + chr4_4:68859345-68859364 Msa0698490:CDS 25.0%
! TCAAACTAGTATCATGTTTA+TGG - chr4_4:68859479-68859498 None:intergenic 25.0%
! AGAAAACTAACTTATGTCAA+TGG - chr4_4:68859571-68859590 None:intergenic 25.0%
!!! ATTGACATAAGTTAGTTTTC+TGG + chr4_4:68859570-68859589 Msa0698490:intron 25.0%
!!! TTGACATAAGTTAGTTTTCT+GGG + chr4_4:68859571-68859590 Msa0698490:intron 25.0%
!! GAACTTATGAAATTAGCTTA+TGG + chr4_4:68859604-68859623 Msa0698490:intron 25.0%
! TTGACTTATGCTTCATATAT+TGG + chr4_4:68860080-68860099 Msa0698490:intron 25.0%
! GTATAGTAAATAGATAGAGT+GGG - chr4_4:68860290-68860309 None:intergenic 25.0%
! TATACTTTGTAGTAAATCGA+TGG + chr4_4:68860583-68860602 Msa0698490:intron 25.0%
!! GTATCATATGATTTTTCTTG+TGG + chr4_4:68860688-68860707 Msa0698490:intron 25.0%
! GGATTAACGAAAGAATAATT+TGG - chr4_4:68861034-68861053 None:intergenic 25.0%
!! ATCGAATAAAAACCATTTTG+AGG + chr4_4:68858887-68858906 Msa0698490:five_prime_UTR 25.0%
! GAAATTTGTAACAGCAAATA+TGG + chr4_4:68859057-68859076 Msa0698490:intron 25.0%
!!! GAATTTGATAATCACTTTTG+AGG - chr4_4:68859167-68859186 None:intergenic 25.0%
! TGATATATTGTATACTCTTG+TGG + chr4_4:68859272-68859291 Msa0698490:intron 25.0%
! AAAATTGTTGTGGAATTGAA+TGG + chr4_4:68859345-68859364 Msa0698490:CDS 25.0%
! TCAAACTAGTATCATGTTTA+TGG - chr4_4:68859479-68859498 None:intergenic 25.0%
! AGAAAACTAACTTATGTCAA+TGG - chr4_4:68859571-68859590 None:intergenic 25.0%
!!! ATTGACATAAGTTAGTTTTC+TGG + chr4_4:68859570-68859589 Msa0698490:intron 25.0%
!!! TTGACATAAGTTAGTTTTCT+GGG + chr4_4:68859571-68859590 Msa0698490:intron 25.0%
!! GAACTTATGAAATTAGCTTA+TGG + chr4_4:68859604-68859623 Msa0698490:intron 25.0%
! TTGACTTATGCTTCATATAT+TGG + chr4_4:68860080-68860099 Msa0698490:intron 25.0%
! GTATAGTAAATAGATAGAGT+GGG - chr4_4:68860290-68860309 None:intergenic 25.0%
! TATACTTTGTAGTAAATCGA+TGG + chr4_4:68860583-68860602 Msa0698490:intron 25.0%
!! GTATCATATGATTTTTCTTG+TGG + chr4_4:68860688-68860707 Msa0698490:intron 25.0%
! GGATTAACGAAAGAATAATT+TGG - chr4_4:68861034-68861053 None:intergenic 25.0%
!! TTGATAATCACTTTTGAGGA+TGG - chr4_4:68859163-68859182 None:intergenic 30.0%
!! ATGTAGTTGACTCTATTTTG+TGG + chr4_4:68859228-68859247 Msa0698490:intron 30.0%
!! TGTAGTTGACTCTATTTTGT+GGG + chr4_4:68859229-68859248 Msa0698490:intron 30.0%
TTGTATACTCTTGTGGTTAT+AGG + chr4_4:68859279-68859298 Msa0698490:intron 30.0%
CTTGTGGTTATAGGATATAT+TGG + chr4_4:68859288-68859307 Msa0698490:intron 30.0%
AATGGAAGATTGAATAAGTG+TGG + chr4_4:68859363-68859382 Msa0698490:CDS 30.0%
! CAATATTCCCAAGCTTTTAT+CGG + chr4_4:68859627-68859646 Msa0698490:intron 30.0%
AAATAAGCCGATAAAAGCTT+GGG - chr4_4:68859637-68859656 None:intergenic 30.0%
AAAATAAGCCGATAAAAGCT+TGG - chr4_4:68859638-68859657 None:intergenic 30.0%
AAACTTAATTAGGGTCTGTT+TGG - chr4_4:68859819-68859838 None:intergenic 30.0%
TATAGTTCCTAACTTTCTTG+TGG + chr4_4:68859845-68859864 Msa0698490:intron 30.0%
!!! ATTTATTTGCTTTTGGTTCC+TGG + chr4_4:68859968-68859987 Msa0698490:intron 30.0%
!!! TCTAGTAGGCTTTTAAAACT+TGG + chr4_4:68860010-68860029 Msa0698490:intron 30.0%
!!! CTAGTAGGCTTTTAAAACTT+GGG + chr4_4:68860011-68860030 Msa0698490:intron 30.0%
TCATATATTGGAAATCACTG+TGG + chr4_4:68860092-68860111 Msa0698490:intron 30.0%
TTCAAACCGTTATTAATGGT+TGG + chr4_4:68860209-68860228 Msa0698490:intron 30.0%
TCAAACCGTTATTAATGGTT+GGG + chr4_4:68860210-68860229 Msa0698490:intron 30.0%
! TTATTATGCTTTTATGGGGT+GGG + chr4_4:68860244-68860263 Msa0698490:intron 30.0%
GGTATAGTAAATAGATAGAG+TGG - chr4_4:68860291-68860310 None:intergenic 30.0%
ACAAGCAACATAACATTCAA+CGG - chr4_4:68860666-68860685 None:intergenic 30.0%
ATTTGAGCAACCAATAGTTA+GGG - chr4_4:68860715-68860734 None:intergenic 30.0%
!!! AGTGTTGGGTTTTTTCTATT+AGG + chr4_4:68860819-68860838 Msa0698490:CDS 30.0%
!!! GTGTTGGGTTTTTTCTATTA+GGG + chr4_4:68860820-68860839 Msa0698490:CDS 30.0%
!!! ATTTTGAAACACAGAAGCTA+GGG - chr4_4:68860992-68861011 None:intergenic 30.0%
!!! AATTTTGAAACACAGAAGCT+AGG - chr4_4:68860993-68861012 None:intergenic 30.0%
AATCCATTTGTCATGATGAA+TGG + chr4_4:68861049-68861068 Msa0698490:three_prime_UTR 30.0%
!! TTGATAATCACTTTTGAGGA+TGG - chr4_4:68859163-68859182 None:intergenic 30.0%
!! ATGTAGTTGACTCTATTTTG+TGG + chr4_4:68859228-68859247 Msa0698490:intron 30.0%
!! TGTAGTTGACTCTATTTTGT+GGG + chr4_4:68859229-68859248 Msa0698490:intron 30.0%
TTGTATACTCTTGTGGTTAT+AGG + chr4_4:68859279-68859298 Msa0698490:intron 30.0%
CTTGTGGTTATAGGATATAT+TGG + chr4_4:68859288-68859307 Msa0698490:intron 30.0%
AATGGAAGATTGAATAAGTG+TGG + chr4_4:68859363-68859382 Msa0698490:CDS 30.0%
! CAATATTCCCAAGCTTTTAT+CGG + chr4_4:68859627-68859646 Msa0698490:intron 30.0%
AAATAAGCCGATAAAAGCTT+GGG - chr4_4:68859637-68859656 None:intergenic 30.0%
AAAATAAGCCGATAAAAGCT+TGG - chr4_4:68859638-68859657 None:intergenic 30.0%
AAACTTAATTAGGGTCTGTT+TGG - chr4_4:68859819-68859838 None:intergenic 30.0%
TATAGTTCCTAACTTTCTTG+TGG + chr4_4:68859845-68859864 Msa0698490:intron 30.0%
!!! ATTTATTTGCTTTTGGTTCC+TGG + chr4_4:68859968-68859987 Msa0698490:intron 30.0%
!!! TCTAGTAGGCTTTTAAAACT+TGG + chr4_4:68860010-68860029 Msa0698490:intron 30.0%
!!! CTAGTAGGCTTTTAAAACTT+GGG + chr4_4:68860011-68860030 Msa0698490:intron 30.0%
TCATATATTGGAAATCACTG+TGG + chr4_4:68860092-68860111 Msa0698490:intron 30.0%
TTCAAACCGTTATTAATGGT+TGG + chr4_4:68860209-68860228 Msa0698490:intron 30.0%
TCAAACCGTTATTAATGGTT+GGG + chr4_4:68860210-68860229 Msa0698490:intron 30.0%
! TTATTATGCTTTTATGGGGT+GGG + chr4_4:68860244-68860263 Msa0698490:intron 30.0%
GGTATAGTAAATAGATAGAG+TGG - chr4_4:68860291-68860310 None:intergenic 30.0%
ACAAGCAACATAACATTCAA+CGG - chr4_4:68860666-68860685 None:intergenic 30.0%
ATTTGAGCAACCAATAGTTA+GGG - chr4_4:68860715-68860734 None:intergenic 30.0%
!!! AGTGTTGGGTTTTTTCTATT+AGG + chr4_4:68860819-68860838 Msa0698490:CDS 30.0%
!!! GTGTTGGGTTTTTTCTATTA+GGG + chr4_4:68860820-68860839 Msa0698490:CDS 30.0%
!!! ATTTTGAAACACAGAAGCTA+GGG - chr4_4:68860992-68861011 None:intergenic 30.0%
!!! AATTTTGAAACACAGAAGCT+AGG - chr4_4:68860993-68861012 None:intergenic 30.0%
AATCCATTTGTCATGATGAA+TGG + chr4_4:68861049-68861068 Msa0698490:three_prime_UTR 30.0%
CAATTTCTCTGGTAAGATCT+AGG + chr4_4:68858965-68858984 Msa0698490:intron 35.0%
AGATCTAGGTTTCTTCGATT+TGG + chr4_4:68858979-68858998 Msa0698490:intron 35.0%
!! TAGGTTTCTTCGATTTGGAT+TGG + chr4_4:68858984-68859003 Msa0698490:intron 35.0%
TTGTAACAGCAAATATGGTG+AGG + chr4_4:68859062-68859081 Msa0698490:intron 35.0%
TGTAACAGCAAATATGGTGA+GGG + chr4_4:68859063-68859082 Msa0698490:intron 35.0%
TTAATTAGGGTCTGTTTGGA+TGG - chr4_4:68859815-68859834 None:intergenic 35.0%
AGAATGACCACAAGAAAGTT+AGG - chr4_4:68859855-68859874 None:intergenic 35.0%
TGTTTGATCTCGACATAACA+AGG - chr4_4:68859930-68859949 None:intergenic 35.0%
CTACTAGACCTAACATAAAG+GGG - chr4_4:68859998-68860017 None:intergenic 35.0%
CCTACTAGACCTAACATAAA+GGG - chr4_4:68859999-68860018 None:intergenic 35.0%
!!! TAGGCTTTTAAAACTTGGGT+TGG + chr4_4:68860015-68860034 Msa0698490:intron 35.0%
ATATTGGAAATCACTGTGGT+AGG + chr4_4:68860096-68860115 Msa0698490:intron 35.0%
CATAAGTGAGTGAGACATTT+GGG - chr4_4:68860128-68860147 None:intergenic 35.0%
CAAATGTCTCACTCACTTAT+GGG + chr4_4:68860127-68860146 Msa0698490:intron 35.0%
ATACGCCCAACCATTAATAA+CGG - chr4_4:68860218-68860237 None:intergenic 35.0%
! CTTATTATGCTTTTATGGGG+TGG + chr4_4:68860243-68860262 Msa0698490:intron 35.0%
TAGTAAATAGATAGAGTGGG+AGG - chr4_4:68860287-68860306 None:intergenic 35.0%
AGACAGAAACCTGTTCTATA+TGG + chr4_4:68860492-68860511 Msa0698490:intron 35.0%
GACAGAAACCTGTTCTATAT+GGG + chr4_4:68860493-68860512 Msa0698490:intron 35.0%
ACAGAAACCTGTTCTATATG+GGG + chr4_4:68860494-68860513 Msa0698490:intron 35.0%
CTGAAGTTGCTATCATCATA+TGG + chr4_4:68860636-68860655 Msa0698490:intron 35.0%
GATTTGAGCAACCAATAGTT+AGG - chr4_4:68860716-68860735 None:intergenic 35.0%
TTGCTCAAATCATGCAGTTT+GGG + chr4_4:68860725-68860744 Msa0698490:intron 35.0%
!! AATGTTGGTGGTAAAGTGTT+GGG + chr4_4:68860805-68860824 Msa0698490:CDS 35.0%
CAATTTCTCTGGTAAGATCT+AGG + chr4_4:68858965-68858984 Msa0698490:intron 35.0%
AGATCTAGGTTTCTTCGATT+TGG + chr4_4:68858979-68858998 Msa0698490:intron 35.0%
!! TAGGTTTCTTCGATTTGGAT+TGG + chr4_4:68858984-68859003 Msa0698490:intron 35.0%
TTGTAACAGCAAATATGGTG+AGG + chr4_4:68859062-68859081 Msa0698490:intron 35.0%
TGTAACAGCAAATATGGTGA+GGG + chr4_4:68859063-68859082 Msa0698490:intron 35.0%
TTAATTAGGGTCTGTTTGGA+TGG - chr4_4:68859815-68859834 None:intergenic 35.0%
AGAATGACCACAAGAAAGTT+AGG - chr4_4:68859855-68859874 None:intergenic 35.0%
TGTTTGATCTCGACATAACA+AGG - chr4_4:68859930-68859949 None:intergenic 35.0%
CTACTAGACCTAACATAAAG+GGG - chr4_4:68859998-68860017 None:intergenic 35.0%
CCTACTAGACCTAACATAAA+GGG - chr4_4:68859999-68860018 None:intergenic 35.0%
!!! TAGGCTTTTAAAACTTGGGT+TGG + chr4_4:68860015-68860034 Msa0698490:intron 35.0%
ATATTGGAAATCACTGTGGT+AGG + chr4_4:68860096-68860115 Msa0698490:intron 35.0%
CATAAGTGAGTGAGACATTT+GGG - chr4_4:68860128-68860147 None:intergenic 35.0%
CAAATGTCTCACTCACTTAT+GGG + chr4_4:68860127-68860146 Msa0698490:intron 35.0%
ATACGCCCAACCATTAATAA+CGG - chr4_4:68860218-68860237 None:intergenic 35.0%
! CTTATTATGCTTTTATGGGG+TGG + chr4_4:68860243-68860262 Msa0698490:intron 35.0%
TAGTAAATAGATAGAGTGGG+AGG - chr4_4:68860287-68860306 None:intergenic 35.0%
AGACAGAAACCTGTTCTATA+TGG + chr4_4:68860492-68860511 Msa0698490:intron 35.0%
GACAGAAACCTGTTCTATAT+GGG + chr4_4:68860493-68860512 Msa0698490:intron 35.0%
ACAGAAACCTGTTCTATATG+GGG + chr4_4:68860494-68860513 Msa0698490:intron 35.0%
CTGAAGTTGCTATCATCATA+TGG + chr4_4:68860636-68860655 Msa0698490:intron 35.0%
GATTTGAGCAACCAATAGTT+AGG - chr4_4:68860716-68860735 None:intergenic 35.0%
TTGCTCAAATCATGCAGTTT+GGG + chr4_4:68860725-68860744 Msa0698490:intron 35.0%
!! AATGTTGGTGGTAAAGTGTT+GGG + chr4_4:68860805-68860824 Msa0698490:CDS 35.0%
TCAACGCAGAATTAGGGTTA+CGG - chr4_4:68858916-68858935 None:intergenic 40.0%
ACTGTCTCAACGCAGAATTA+GGG - chr4_4:68858922-68858941 None:intergenic 40.0%
AGAGAAATTGTGTGCTTGTG+CGG - chr4_4:68858955-68858974 None:intergenic 40.0%
ATGTACAATGCTGAGAAACG+TGG + chr4_4:68859115-68859134 Msa0698490:CDS 40.0%
TGTACAATGCTGAGAAACGT+GGG + chr4_4:68859116-68859135 Msa0698490:CDS 40.0%
AGGATGGCCTAATCATAACT+TGG - chr4_4:68859147-68859166 None:intergenic 40.0%
! CATGCTTTTGCATGACGATA+AGG - chr4_4:68859189-68859208 None:intergenic 40.0%
CTTATCGTCATGCAAAAGCA+TGG + chr4_4:68859187-68859206 Msa0698490:CDS 40.0%
! TCATGCAAAAGCATGGTATG+TGG + chr4_4:68859194-68859213 Msa0698490:intron 40.0%
!! TCGAATACGTTGATGATCAC+AGG + chr4_4:68859316-68859335 Msa0698490:CDS 40.0%
ATTAGTCCTCGTTTCGATGT+TGG + chr4_4:68859390-68859409 Msa0698490:CDS 40.0%
!! GTTGGTGTCAAAGAGATTGA+AGG + chr4_4:68859408-68859427 Msa0698490:CDS 40.0%
GTGTCAAAGAGATTGAAGGA+TGG + chr4_4:68859412-68859431 Msa0698490:CDS 40.0%
!! TTTTAGCTGACCTGTCTTGA+GGG - chr4_4:68859453-68859472 None:intergenic 40.0%
!!! TTTTTAGCTGACCTGTCTTG+AGG - chr4_4:68859454-68859473 None:intergenic 40.0%
TTTGTGTACCACATTGACGT+TGG + chr4_4:68859875-68859894 Msa0698490:intron 40.0%
CTAACATAAAGGGGAATTCC+AGG - chr4_4:68859989-68860008 None:intergenic 40.0%
CTGGAATTCCCCTTTATGTT+AGG + chr4_4:68859987-68860006 Msa0698490:intron 40.0%
CCCTTTATGTTAGGTCTAGT+AGG + chr4_4:68859996-68860015 Msa0698490:intron 40.0%
GCCTACTAGACCTAACATAA+AGG - chr4_4:68860000-68860019 None:intergenic 40.0%
!! AACTTGGGTTGGAATTGTAG+AGG + chr4_4:68860026-68860045 Msa0698490:intron 40.0%
!! ACTTGGGTTGGAATTGTAGA+GGG + chr4_4:68860027-68860046 Msa0698490:intron 40.0%
TAAGTCAAGACAAACACTGC+CGG - chr4_4:68860068-68860087 None:intergenic 40.0%
CCATAAGTGAGTGAGACATT+TGG - chr4_4:68860129-68860148 None:intergenic 40.0%
CCAAATGTCTCACTCACTTA+TGG + chr4_4:68860126-68860145 Msa0698490:intron 40.0%
CACTCACTTATGGGACTATT+TGG + chr4_4:68860136-68860155 Msa0698490:intron 40.0%
GGTGGGAGTAGAATATTCAT+TGG + chr4_4:68860261-68860280 Msa0698490:intron 40.0%
CTGTATTCCCCATATAGAAC+AGG - chr4_4:68860504-68860523 None:intergenic 40.0%
TTCTTGTGGTCCCTAACTAT+TGG + chr4_4:68860702-68860721 Msa0698490:intron 40.0%
GTTGCTCAAATCATGCAGTT+TGG + chr4_4:68860724-68860743 Msa0698490:intron 40.0%
TGGTATCATGGATCATGAAG+AGG + chr4_4:68860771-68860790 Msa0698490:CDS 40.0%
!! GAATGTTGGTGGTAAAGTGT+TGG + chr4_4:68860804-68860823 Msa0698490:CDS 40.0%
TGGGTAAACTATTGTGCTCT+TGG + chr4_4:68860965-68860984 Msa0698490:three_prime_UTR 40.0%
AGGCCATTCATCATGACAAA+TGG - chr4_4:68861055-68861074 None:intergenic 40.0%
TCAAACTTGGTATGCTCTAG+AGG - chr4_4:68861078-68861097 None:intergenic 40.0%
TCAACGCAGAATTAGGGTTA+CGG - chr4_4:68858916-68858935 None:intergenic 40.0%
ACTGTCTCAACGCAGAATTA+GGG - chr4_4:68858922-68858941 None:intergenic 40.0%
AGAGAAATTGTGTGCTTGTG+CGG - chr4_4:68858955-68858974 None:intergenic 40.0%
ATGTACAATGCTGAGAAACG+TGG + chr4_4:68859115-68859134 Msa0698490:CDS 40.0%
TGTACAATGCTGAGAAACGT+GGG + chr4_4:68859116-68859135 Msa0698490:CDS 40.0%
AGGATGGCCTAATCATAACT+TGG - chr4_4:68859147-68859166 None:intergenic 40.0%
! CATGCTTTTGCATGACGATA+AGG - chr4_4:68859189-68859208 None:intergenic 40.0%
CTTATCGTCATGCAAAAGCA+TGG + chr4_4:68859187-68859206 Msa0698490:CDS 40.0%
! TCATGCAAAAGCATGGTATG+TGG + chr4_4:68859194-68859213 Msa0698490:intron 40.0%
!! TCGAATACGTTGATGATCAC+AGG + chr4_4:68859316-68859335 Msa0698490:CDS 40.0%
ATTAGTCCTCGTTTCGATGT+TGG + chr4_4:68859390-68859409 Msa0698490:CDS 40.0%
!! GTTGGTGTCAAAGAGATTGA+AGG + chr4_4:68859408-68859427 Msa0698490:CDS 40.0%
GTGTCAAAGAGATTGAAGGA+TGG + chr4_4:68859412-68859431 Msa0698490:CDS 40.0%
!! TTTTAGCTGACCTGTCTTGA+GGG - chr4_4:68859453-68859472 None:intergenic 40.0%
!!! TTTTTAGCTGACCTGTCTTG+AGG - chr4_4:68859454-68859473 None:intergenic 40.0%
TTTGTGTACCACATTGACGT+TGG + chr4_4:68859875-68859894 Msa0698490:intron 40.0%
CTAACATAAAGGGGAATTCC+AGG - chr4_4:68859989-68860008 None:intergenic 40.0%
CTGGAATTCCCCTTTATGTT+AGG + chr4_4:68859987-68860006 Msa0698490:intron 40.0%
CCCTTTATGTTAGGTCTAGT+AGG + chr4_4:68859996-68860015 Msa0698490:intron 40.0%
GCCTACTAGACCTAACATAA+AGG - chr4_4:68860000-68860019 None:intergenic 40.0%
!! AACTTGGGTTGGAATTGTAG+AGG + chr4_4:68860026-68860045 Msa0698490:intron 40.0%
!! ACTTGGGTTGGAATTGTAGA+GGG + chr4_4:68860027-68860046 Msa0698490:intron 40.0%
TAAGTCAAGACAAACACTGC+CGG - chr4_4:68860068-68860087 None:intergenic 40.0%
CCATAAGTGAGTGAGACATT+TGG - chr4_4:68860129-68860148 None:intergenic 40.0%
CCAAATGTCTCACTCACTTA+TGG + chr4_4:68860126-68860145 Msa0698490:intron 40.0%
CACTCACTTATGGGACTATT+TGG + chr4_4:68860136-68860155 Msa0698490:intron 40.0%
GGTGGGAGTAGAATATTCAT+TGG + chr4_4:68860261-68860280 Msa0698490:intron 40.0%
CTGTATTCCCCATATAGAAC+AGG - chr4_4:68860504-68860523 None:intergenic 40.0%
TTCTTGTGGTCCCTAACTAT+TGG + chr4_4:68860702-68860721 Msa0698490:intron 40.0%
GTTGCTCAAATCATGCAGTT+TGG + chr4_4:68860724-68860743 Msa0698490:intron 40.0%
TGGTATCATGGATCATGAAG+AGG + chr4_4:68860771-68860790 Msa0698490:CDS 40.0%
!! GAATGTTGGTGGTAAAGTGT+TGG + chr4_4:68860804-68860823 Msa0698490:CDS 40.0%
TGGGTAAACTATTGTGCTCT+TGG + chr4_4:68860965-68860984 Msa0698490:three_prime_UTR 40.0%
AGGCCATTCATCATGACAAA+TGG - chr4_4:68861055-68861074 None:intergenic 40.0%
TCAAACTTGGTATGCTCTAG+AGG - chr4_4:68861078-68861097 None:intergenic 40.0%
CACTGTCTCAACGCAGAATT+AGG - chr4_4:68858923-68858942 None:intergenic 45.0%
GCACAAGCACACAATTTCTC+TGG + chr4_4:68858954-68858973 Msa0698490:five_prime_UTR 45.0%
!! GGAAGCGCCAAGTTATGATT+AGG + chr4_4:68859137-68859156 Msa0698490:CDS 45.0%
! GCAAAAGCATGGTATGTGGT+TGG + chr4_4:68859198-68859217 Msa0698490:intron 45.0%
!! TACGTTGATGATCACAGGTC+TGG + chr4_4:68859321-68859340 Msa0698490:CDS 45.0%
CAGGTCTGGCAAAATTGTTG+TGG + chr4_4:68859335-68859354 Msa0698490:CDS 45.0%
TTGACACCAACATCGAAACG+AGG - chr4_4:68859399-68859418 None:intergenic 45.0%
!! AGATTGAAGGATGGACTGCT+AGG + chr4_4:68859421-68859440 Msa0698490:CDS 45.0%
TCAAGACTCCAACGTCAATG+TGG - chr4_4:68859886-68859905 None:intergenic 45.0%
!! CTTGGGTTGGAATTGTAGAG+GGG + chr4_4:68860028-68860047 Msa0698490:intron 45.0%
AGGGGTTAACCAGAACAATC+CGG + chr4_4:68860046-68860065 Msa0698490:intron 45.0%
ATTGTCTTGACTACCTCTGC+TGG + chr4_4:68860751-68860770 Msa0698490:CDS 45.0%
ATGATCCATGATACCAGCAG+AGG - chr4_4:68860767-68860786 None:intergenic 45.0%
TCATGGATCATGAAGAGGCT+AGG + chr4_4:68860776-68860795 Msa0698490:CDS 45.0%
GAGGCTAGGAGAAAGAATGT+TGG + chr4_4:68860790-68860809 Msa0698490:CDS 45.0%
GCTAGGAGAAAGAATGTTGG+TGG + chr4_4:68860793-68860812 Msa0698490:CDS 45.0%
!! AACTTGGTATGCTCTAGAGG+AGG - chr4_4:68861075-68861094 None:intergenic 45.0%
CACTGTCTCAACGCAGAATT+AGG - chr4_4:68858923-68858942 None:intergenic 45.0%
GCACAAGCACACAATTTCTC+TGG + chr4_4:68858954-68858973 Msa0698490:five_prime_UTR 45.0%
!! GGAAGCGCCAAGTTATGATT+AGG + chr4_4:68859137-68859156 Msa0698490:CDS 45.0%
! GCAAAAGCATGGTATGTGGT+TGG + chr4_4:68859198-68859217 Msa0698490:intron 45.0%
!! TACGTTGATGATCACAGGTC+TGG + chr4_4:68859321-68859340 Msa0698490:CDS 45.0%
CAGGTCTGGCAAAATTGTTG+TGG + chr4_4:68859335-68859354 Msa0698490:CDS 45.0%
TTGACACCAACATCGAAACG+AGG - chr4_4:68859399-68859418 None:intergenic 45.0%
!! AGATTGAAGGATGGACTGCT+AGG + chr4_4:68859421-68859440 Msa0698490:CDS 45.0%
TCAAGACTCCAACGTCAATG+TGG - chr4_4:68859886-68859905 None:intergenic 45.0%
!! CTTGGGTTGGAATTGTAGAG+GGG + chr4_4:68860028-68860047 Msa0698490:intron 45.0%
AGGGGTTAACCAGAACAATC+CGG + chr4_4:68860046-68860065 Msa0698490:intron 45.0%
ATTGTCTTGACTACCTCTGC+TGG + chr4_4:68860751-68860770 Msa0698490:CDS 45.0%
ATGATCCATGATACCAGCAG+AGG - chr4_4:68860767-68860786 None:intergenic 45.0%
TCATGGATCATGAAGAGGCT+AGG + chr4_4:68860776-68860795 Msa0698490:CDS 45.0%
GAGGCTAGGAGAAAGAATGT+TGG + chr4_4:68860790-68860809 Msa0698490:CDS 45.0%
GCTAGGAGAAAGAATGTTGG+TGG + chr4_4:68860793-68860812 Msa0698490:CDS 45.0%
!! AACTTGGTATGCTCTAGAGG+AGG - chr4_4:68861075-68861094 None:intergenic 45.0%
!! AAATTAAAATATTAAAAGAT+GGG - chr4_4:68860405-68860424 None:intergenic 5.0%
!! TAAATTAAAATATTAAAAGA+TGG - chr4_4:68860406-68860425 None:intergenic 5.0%
!! AAATTAAAATATTAAAAGAT+GGG - chr4_4:68860405-68860424 None:intergenic 5.0%
!! TAAATTAAAATATTAAAAGA+TGG - chr4_4:68860406-68860425 None:intergenic 5.0%
GGGTTACGGAAGCCTCAAAA+TGG - chr4_4:68858902-68858921 None:intergenic 50.0%
TAGGCTTCTTCCCTCAAGAC+AGG + chr4_4:68859440-68859459 Msa0698490:CDS 50.0%
CAAACACTGCCGGATTGTTC+TGG - chr4_4:68860058-68860077 None:intergenic 50.0%
GACTACCTCTGCTGGTATCA+TGG + chr4_4:68860759-68860778 Msa0698490:CDS 50.0%
GGGTTACGGAAGCCTCAAAA+TGG - chr4_4:68858902-68858921 None:intergenic 50.0%
TAGGCTTCTTCCCTCAAGAC+AGG + chr4_4:68859440-68859459 Msa0698490:CDS 50.0%
CAAACACTGCCGGATTGTTC+TGG - chr4_4:68860058-68860077 None:intergenic 50.0%
GACTACCTCTGCTGGTATCA+TGG + chr4_4:68860759-68860778 Msa0698490:CDS 50.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 68858882 68861106 68858882 ID=Msa0698490;Name=Msa0698490
chr4_4 mRNA 68858882 68861106 68858882 ID=Msa0698490-mRNA-1;Parent=Msa0698490;Name=Msa0698490-mRNA-1;_AED=0.08;_eAED=0.08;_QI=99|1|1|1|0.66|0.5|4|266|130
chr4_4 exon 68858882 68858975 68858882 ID=Msa0698490-mRNA-1:exon:20507;Parent=Msa0698490-mRNA-1
chr4_4 exon 68859071 68859208 68859071 ID=Msa0698490-mRNA-1:exon:20508;Parent=Msa0698490-mRNA-1
chr4_4 exon 68859301 68859461 68859301 ID=Msa0698490-mRNA-1:exon:20509;Parent=Msa0698490-mRNA-1
chr4_4 exon 68860742 68861106 68860742 ID=Msa0698490-mRNA-1:exon:20510;Parent=Msa0698490-mRNA-1
chr4_4 five_prime_UTR 68858882 68858975 68858882 ID=Msa0698490-mRNA-1:five_prime_utr;Parent=Msa0698490-mRNA-1
chr4_4 five_prime_UTR 68859071 68859075 68859071 ID=Msa0698490-mRNA-1:five_prime_utr;Parent=Msa0698490-mRNA-1
chr4_4 CDS 68859076 68859208 68859076 ID=Msa0698490-mRNA-1:cds;Parent=Msa0698490-mRNA-1
chr4_4 CDS 68859301 68859461 68859301 ID=Msa0698490-mRNA-1:cds;Parent=Msa0698490-mRNA-1
chr4_4 CDS 68860742 68860840 68860742 ID=Msa0698490-mRNA-1:cds;Parent=Msa0698490-mRNA-1
chr4_4 three_prime_UTR 68860841 68861106 68860841 ID=Msa0698490-mRNA-1:three_prime_utr;Parent=Msa0698490-mRNA-1
Gene Sequence

>Msa0698490

ATGGTGAGGGTTAGTGTTTTGAACGATGCACTGAAGAGCATGTACAATGCTGAGAAACGTGGGAAGCGCCAAGTTATGATTAGGCCATCCTCAAAAGTGATTATCAAATTCCTTATCGTCATGCAAAAGCATGGATATATTGGAGAGTTCGAATACGTTGATGATCACAGGTCTGGCAAAATTGTTGTGGAATTGAATGGAAGATTGAATAAGTGTGGTGTTATTAGTCCTCGTTTCGATGTTGGTGTCAAAGAGATTGAAGGATGGACTGCTAGGCTTCTTCCCTCAAGACAGTTTGGGTATATTGTCTTGACTACCTCTGCTGGTATCATGGATCATGAAGAGGCTAGGAGAAAGAATGTTGGTGGTAAAGTGTTGGGTTTTTTCTATTAG

Protein sequence

>Msa0698490

MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY*