AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0615440


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0615440 MtrunA17_Chr4g0065831 100.000 130 0 0 1 130 1 130 8.31e-94 266
Msa0615440 MtrunA17_Chr4g0051921 99.231 130 1 0 1 130 1 130 2.23e-93 265
Msa0615440 MtrunA17_Chr1g0205971 99.231 130 1 0 1 130 1 130 2.23e-93 265
Msa0615440 MtrunA17_Chr8g0389371 52.000 125 60 0 6 130 5 129 1.43e-45 144
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0615440 AT5G59850.1 99.231 130 1 0 1 130 1 130 1.84e-93 265
Msa0615440 AT1G07770.2 99.231 130 1 0 1 130 1 130 1.84e-93 265
Msa0615440 AT1G07770.3 99.231 130 1 0 1 130 1 130 1.84e-93 265
Msa0615440 AT1G07770.1 99.231 130 1 0 1 130 1 130 1.84e-93 265
Msa0615440 AT3G46040.1 97.692 130 3 0 1 130 1 130 4.20e-92 262
Msa0615440 AT2G39590.1 91.538 130 11 0 1 130 1 130 4.49e-87 249
Msa0615440 AT4G29430.1 54.400 125 57 0 6 130 5 129 3.10e-47 149
Msa0615440 AT2G19720.1 53.600 125 58 0 6 130 5 129 3.24e-45 144

Find 45 sgRNAs with CRISPR-Local

Find 296 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGTAAGCTAAATTGAATTT+TGG 0.179131 4_2:+64930493 Msa0615440:three_prime_UTR
CACTGTCTCAACGCAGAATT+AGG 0.187245 4_2:-64928442 None:intergenic
GAAATTTGTAACAGCAAATA+TGG 0.239649 4_2:+64928579 Msa0615440:intron
TTTACATGGATATTGTAATA+TGG 0.280818 4_2:+64930459 Msa0615440:three_prime_UTR
GGATTAACGAAAGAATAATT+TGG 0.282896 4_2:-64930579 None:intergenic
TGGGTAAACTATTGTGCTCT+TGG 0.338767 4_2:+64930513 Msa0615440:three_prime_UTR
CTTGTGGTTATAGGATATAT+TGG 0.379495 4_2:+64928817 Msa0615440:intron
GGGTTACGGAAGCCTCAAAA+TGG 0.386846 4_2:-64928421 None:intergenic
GACTACCTCTGCTGGTATCA+TGG 0.414748 4_2:+64930307 Msa0615440:CDS
AATCCATTTGTCATGATGAA+TGG 0.432930 4_2:+64930597 Msa0615440:three_prime_UTR
TATTGTAATATGGATTACTT+AGG 0.434075 4_2:+64930469 Msa0615440:three_prime_UTR
ATTAGTCCTCGTTTCGATGT+TGG 0.460967 4_2:+64928919 Msa0615440:CDS
GCACAAGCACACAATTTCTC+TGG 0.472256 4_2:+64928476 Msa0615440:five_prime_UTR
AGGCCATTCATCATGACAAA+TGG 0.479914 4_2:-64930600 None:intergenic
AAAATTGTTGTGGAATTGAA+TGG 0.479932 4_2:+64928874 Msa0615440:CDS
TACGTTGATGATCACAGGTC+TGG 0.486815 4_2:+64928850 Msa0615440:CDS
AATGTTGGTGGTAAAGTGTT+GGG 0.506719 4_2:+64930353 Msa0615440:CDS
ACTGTCTCAACGCAGAATTA+GGG 0.523684 4_2:-64928441 None:intergenic
AGATTGAAGGATGGACTGCT+AGG 0.524175 4_2:+64928950 Msa0615440:CDS
AGGATGGCCTAATCATAACT+TGG 0.529437 4_2:-64928666 None:intergenic
GGAAGCGCCAAGTTATGATT+AGG 0.530843 4_2:+64928659 Msa0615440:CDS
ATTGTCTTGACTACCTCTGC+TGG 0.534592 4_2:+64930299 Msa0615440:CDS
GAATGTTGGTGGTAAAGTGT+TGG 0.537027 4_2:+64930352 Msa0615440:CDS
TCGAATACGTTGATGATCAC+AGG 0.543527 4_2:+64928845 Msa0615440:CDS
TCAACGCAGAATTAGGGTTA+CGG 0.543710 4_2:-64928435 None:intergenic
TCATACTTGGTATGCTCTAG+AGG 0.550935 4_2:-64930623 None:intergenic
GATGTTGCAGAACTCATACT+TGG 0.557426 4_2:-64930636 None:intergenic
GCTAGGAGAAAGAATGTTGG+TGG 0.567141 4_2:+64930341 Msa0615440:CDS
TTGTAACAGCAAATATGGTG+AGG 0.575157 4_2:+64928584 Msa0615440:intron
TAGGCTTCTTCCCTCAAGAC+AGG 0.576488 4_2:+64928969 Msa0615440:CDS
TGTAACAGCAAATATGGTGA+GGG 0.583163 4_2:+64928585 Msa0615440:intron
GAGGCTAGGAGAAAGAATGT+TGG 0.584494 4_2:+64930338 Msa0615440:CDS
TCATGGATCATGAAGAGGCT+AGG 0.585008 4_2:+64930324 Msa0615440:CDS
ATGTACAATGCTGAGAAACG+TGG 0.619087 4_2:+64928637 Msa0615440:CDS
GTTGGTGTCAAAGAGATTGA+AGG 0.620427 4_2:+64928937 Msa0615440:CDS
CTTATCGTCATGCAAAAGCA+TGG 0.625917 4_2:+64928709 Msa0615440:CDS
CAGGTCTGGCAAAATTGTTG+TGG 0.629911 4_2:+64928864 Msa0615440:CDS
AATGGAAGATTGAATAAGTG+TGG 0.630140 4_2:+64928892 Msa0615440:CDS
AGAGAAATTGTGTGCTTGTG+CGG 0.632079 4_2:-64928474 None:intergenic
TGGTATCATGGATCATGAAG+AGG 0.639197 4_2:+64930319 Msa0615440:CDS
ATGATCCATGATACCAGCAG+AGG 0.644078 4_2:-64930312 None:intergenic
GTGTCAAAGAGATTGAAGGA+TGG 0.661917 4_2:+64928941 Msa0615440:CDS
TGTACAATGCTGAGAAACGT+GGG 0.665211 4_2:+64928638 Msa0615440:CDS
TACTTGGTATGCTCTAGAGG+AGG 0.667925 4_2:-64930620 None:intergenic
TTGACACCAACATCGAAACG+AGG 0.688564 4_2:-64928925 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CTAATTATTCTTTTATTTAT+TGG + chr4_2:64929862-64929881 Msa0615440:intron 10.0%
!!! CTAATTATTCTTTTATTTAT+TGG + chr4_2:64929862-64929881 Msa0615440:intron 10.0%
!! AAATTATAAAAACAGCTTAT+AGG + chr4_2:64929204-64929223 Msa0615440:intron 15.0%
!! ATAAAACACAAACTTAATTA+GGG - chr4_2:64929357-64929376 None:intergenic 15.0%
!! TATAAAACACAAACTTAATT+AGG - chr4_2:64929358-64929377 None:intergenic 15.0%
!! TAAATTCAAACCATTATTAA+TGG + chr4_2:64929753-64929772 Msa0615440:intron 15.0%
!!! ATTTTCTTATTATGCTTTTA+TGG + chr4_2:64929786-64929805 Msa0615440:intron 15.0%
!!! TTTTCTTATTATGCTTTTAT+GGG + chr4_2:64929787-64929806 Msa0615440:intron 15.0%
!! AAAGAAAAACTAATAGTTAA+AGG + chr4_2:64930083-64930102 Msa0615440:intron 15.0%
!! AAGAAAAACTAATAGTTAAA+GGG + chr4_2:64930084-64930103 Msa0615440:intron 15.0%
!!! ATTCAGTTTTTTTTTTTACA+TGG + chr4_2:64930445-64930464 Msa0615440:three_prime_UTR 15.0%
!! AAATTATAAAAACAGCTTAT+AGG + chr4_2:64929204-64929223 Msa0615440:intron 15.0%
!! ATAAAACACAAACTTAATTA+GGG - chr4_2:64929357-64929376 None:intergenic 15.0%
!! TATAAAACACAAACTTAATT+AGG - chr4_2:64929358-64929377 None:intergenic 15.0%
!! TAAATTCAAACCATTATTAA+TGG + chr4_2:64929753-64929772 Msa0615440:intron 15.0%
!!! ATTTTCTTATTATGCTTTTA+TGG + chr4_2:64929786-64929805 Msa0615440:intron 15.0%
!!! TTTTCTTATTATGCTTTTAT+GGG + chr4_2:64929787-64929806 Msa0615440:intron 15.0%
!! AAAGAAAAACTAATAGTTAA+AGG + chr4_2:64930083-64930102 Msa0615440:intron 15.0%
!! AAGAAAAACTAATAGTTAAA+GGG + chr4_2:64930084-64930103 Msa0615440:intron 15.0%
!!! ATTCAGTTTTTTTTTTTACA+TGG + chr4_2:64930445-64930464 Msa0615440:three_prime_UTR 15.0%
!!! TTTTTTCCTTTCTAATCTAT+TGG + chr4_2:64929502-64929521 Msa0615440:intron 20.0%
!!! TCATGAATCATTTTTAATGA+TGG + chr4_2:64929724-64929743 Msa0615440:intron 20.0%
!!! TTTCTTATTATGCTTTTATG+GGG + chr4_2:64929788-64929807 Msa0615440:intron 20.0%
!! AAATAAAAGAATAATTAGCG+AGG - chr4_2:64929860-64929879 None:intergenic 20.0%
!! AAAATATTAAAAGATGGGAT+GGG - chr4_2:64929948-64929967 None:intergenic 20.0%
!! TAAAATATTAAAAGATGGGA+TGG - chr4_2:64929949-64929968 None:intergenic 20.0%
!! AATTGAATAATTGTTGCAAA+AGG - chr4_2:64929996-64930015 None:intergenic 20.0%
!! AGAAAAACTAATAGTTAAAG+GGG + chr4_2:64930085-64930104 Msa0615440:intron 20.0%
!! ACAAAGTATATAAAGATTGT+CGG - chr4_2:64930121-64930140 None:intergenic 20.0%
!! TTTACATGGATATTGTAATA+TGG + chr4_2:64930459-64930478 Msa0615440:three_prime_UTR 20.0%
!!! TATTGTAATATGGATTACTT+AGG + chr4_2:64930469-64930488 Msa0615440:three_prime_UTR 20.0%
!!! TTGTAAGCTAAATTGAATTT+TGG + chr4_2:64930493-64930512 Msa0615440:three_prime_UTR 20.0%
!!! TGTAAGCTAAATTGAATTTT+GGG + chr4_2:64930494-64930513 Msa0615440:three_prime_UTR 20.0%
!!! TTTTTTCCTTTCTAATCTAT+TGG + chr4_2:64929502-64929521 Msa0615440:intron 20.0%
!!! TCATGAATCATTTTTAATGA+TGG + chr4_2:64929724-64929743 Msa0615440:intron 20.0%
!!! TTTCTTATTATGCTTTTATG+GGG + chr4_2:64929788-64929807 Msa0615440:intron 20.0%
!! AAATAAAAGAATAATTAGCG+AGG - chr4_2:64929860-64929879 None:intergenic 20.0%
!! AAAATATTAAAAGATGGGAT+GGG - chr4_2:64929948-64929967 None:intergenic 20.0%
!! TAAAATATTAAAAGATGGGA+TGG - chr4_2:64929949-64929968 None:intergenic 20.0%
!! AATTGAATAATTGTTGCAAA+AGG - chr4_2:64929996-64930015 None:intergenic 20.0%
!! AGAAAAACTAATAGTTAAAG+GGG + chr4_2:64930085-64930104 Msa0615440:intron 20.0%
!! ACAAAGTATATAAAGATTGT+CGG - chr4_2:64930121-64930140 None:intergenic 20.0%
!! TTTACATGGATATTGTAATA+TGG + chr4_2:64930459-64930478 Msa0615440:three_prime_UTR 20.0%
!!! TATTGTAATATGGATTACTT+AGG + chr4_2:64930469-64930488 Msa0615440:three_prime_UTR 20.0%
!!! TTGTAAGCTAAATTGAATTT+TGG + chr4_2:64930493-64930512 Msa0615440:three_prime_UTR 20.0%
!!! TGTAAGCTAAATTGAATTTT+GGG + chr4_2:64930494-64930513 Msa0615440:three_prime_UTR 20.0%
!! ATCGAATAAAAACCATTTTG+AGG + chr4_2:64928409-64928428 Msa0615440:five_prime_UTR 25.0%
! GAAATTTGTAACAGCAAATA+TGG + chr4_2:64928579-64928598 Msa0615440:intron 25.0%
!!! GAATTTGATAATCACTTTTG+AGG - chr4_2:64928689-64928708 None:intergenic 25.0%
! TGATATATTGTATACTCTTG+TGG + chr4_2:64928801-64928820 Msa0615440:intron 25.0%
! AAAATTGTTGTGGAATTGAA+TGG + chr4_2:64928874-64928893 Msa0615440:CDS 25.0%
! TCAAACTAGTATCATGTTTA+TGG - chr4_2:64929008-64929027 None:intergenic 25.0%
! AGAAAACTAACTTATGTCAA+TGG - chr4_2:64929100-64929119 None:intergenic 25.0%
!!! ATTGACATAAGTTAGTTTTC+TGG + chr4_2:64929099-64929118 Msa0615440:intron 25.0%
!!! TTGACATAAGTTAGTTTTCT+GGG + chr4_2:64929100-64929119 Msa0615440:intron 25.0%
!! GAACTTATGAAATTAGCTTA+TGG + chr4_2:64929133-64929152 Msa0615440:intron 25.0%
! TTGACTTATGCTTCATATAT+TGG + chr4_2:64929628-64929647 Msa0615440:intron 25.0%
! TTCAAACCATTATTAATGGT+TGG + chr4_2:64929757-64929776 Msa0615440:intron 25.0%
! TCAAACCATTATTAATGGTT+GGG + chr4_2:64929758-64929777 Msa0615440:intron 25.0%
! GTATAGTAAATAGATAGAGT+GGG - chr4_2:64929838-64929857 None:intergenic 25.0%
! TATACTTTGTAGTAAATCGA+TGG + chr4_2:64930131-64930150 Msa0615440:intron 25.0%
!! GTATCATATGATTTTTCTTG+TGG + chr4_2:64930236-64930255 Msa0615440:intron 25.0%
! GGATTAACGAAAGAATAATT+TGG - chr4_2:64930582-64930601 None:intergenic 25.0%
!! ATCGAATAAAAACCATTTTG+AGG + chr4_2:64928409-64928428 Msa0615440:five_prime_UTR 25.0%
! GAAATTTGTAACAGCAAATA+TGG + chr4_2:64928579-64928598 Msa0615440:intron 25.0%
!!! GAATTTGATAATCACTTTTG+AGG - chr4_2:64928689-64928708 None:intergenic 25.0%
! TGATATATTGTATACTCTTG+TGG + chr4_2:64928801-64928820 Msa0615440:intron 25.0%
! AAAATTGTTGTGGAATTGAA+TGG + chr4_2:64928874-64928893 Msa0615440:CDS 25.0%
! TCAAACTAGTATCATGTTTA+TGG - chr4_2:64929008-64929027 None:intergenic 25.0%
! AGAAAACTAACTTATGTCAA+TGG - chr4_2:64929100-64929119 None:intergenic 25.0%
!!! ATTGACATAAGTTAGTTTTC+TGG + chr4_2:64929099-64929118 Msa0615440:intron 25.0%
!!! TTGACATAAGTTAGTTTTCT+GGG + chr4_2:64929100-64929119 Msa0615440:intron 25.0%
!! GAACTTATGAAATTAGCTTA+TGG + chr4_2:64929133-64929152 Msa0615440:intron 25.0%
! TTGACTTATGCTTCATATAT+TGG + chr4_2:64929628-64929647 Msa0615440:intron 25.0%
! TTCAAACCATTATTAATGGT+TGG + chr4_2:64929757-64929776 Msa0615440:intron 25.0%
! TCAAACCATTATTAATGGTT+GGG + chr4_2:64929758-64929777 Msa0615440:intron 25.0%
! GTATAGTAAATAGATAGAGT+GGG - chr4_2:64929838-64929857 None:intergenic 25.0%
! TATACTTTGTAGTAAATCGA+TGG + chr4_2:64930131-64930150 Msa0615440:intron 25.0%
!! GTATCATATGATTTTTCTTG+TGG + chr4_2:64930236-64930255 Msa0615440:intron 25.0%
! GGATTAACGAAAGAATAATT+TGG - chr4_2:64930582-64930601 None:intergenic 25.0%
!! TTGATAATCACTTTTGAGGA+TGG - chr4_2:64928685-64928704 None:intergenic 30.0%
!! ATGTAGTTGACTCTATTTTG+TGG + chr4_2:64928754-64928773 Msa0615440:intron 30.0%
!! TGTAGTTGACTCTATTTTGT+GGG + chr4_2:64928755-64928774 Msa0615440:intron 30.0%
TTGTATACTCTTGTGGTTAT+AGG + chr4_2:64928808-64928827 Msa0615440:intron 30.0%
CTTGTGGTTATAGGATATAT+TGG + chr4_2:64928817-64928836 Msa0615440:intron 30.0%
AATGGAAGATTGAATAAGTG+TGG + chr4_2:64928892-64928911 Msa0615440:CDS 30.0%
! CAATATTCCCAAGCTTTTAT+CGG + chr4_2:64929156-64929175 Msa0615440:intron 30.0%
AAATAAGCCGATAAAAGCTT+GGG - chr4_2:64929166-64929185 None:intergenic 30.0%
AAAATAAGCCGATAAAAGCT+TGG - chr4_2:64929167-64929186 None:intergenic 30.0%
AAACTTAATTAGGGTCTGTT+TGG - chr4_2:64929348-64929367 None:intergenic 30.0%
TATAGTTCCTAACTTTCTTG+TGG + chr4_2:64929374-64929393 Msa0615440:intron 30.0%
CAAAAGCCAATAGATTAGAA+AGG - chr4_2:64929511-64929530 None:intergenic 30.0%
!!! CTTTCTAATCTATTGGCTTT+TGG + chr4_2:64929509-64929528 Msa0615440:intron 30.0%
!!! TCTAGTAGGCTTTTAAAACT+TGG + chr4_2:64929558-64929577 Msa0615440:intron 30.0%
!!! CTAGTAGGCTTTTAAAACTT+GGG + chr4_2:64929559-64929578 Msa0615440:intron 30.0%
TCATATATTGGAAATCACTG+TGG + chr4_2:64929640-64929659 Msa0615440:intron 30.0%
! TTATTATGCTTTTATGGGGT+GGG + chr4_2:64929792-64929811 Msa0615440:intron 30.0%
GGTATAGTAAATAGATAGAG+TGG - chr4_2:64929839-64929858 None:intergenic 30.0%
ACAAGCAACATAACATTCAA+CGG - chr4_2:64930214-64930233 None:intergenic 30.0%
ATTTGAGCAACCAATAGTTA+GGG - chr4_2:64930263-64930282 None:intergenic 30.0%
!!! AGTGTTGGGTTTTTTCTATT+AGG + chr4_2:64930367-64930386 Msa0615440:CDS 30.0%
!!! GTGTTGGGTTTTTTCTATTA+GGG + chr4_2:64930368-64930387 Msa0615440:CDS 30.0%
!!! ATTTTGAAACACAGAAGCTA+GGG - chr4_2:64930540-64930559 None:intergenic 30.0%
!!! AATTTTGAAACACAGAAGCT+AGG - chr4_2:64930541-64930560 None:intergenic 30.0%
AATCCATTTGTCATGATGAA+TGG + chr4_2:64930597-64930616 Msa0615440:three_prime_UTR 30.0%
!! TTGATAATCACTTTTGAGGA+TGG - chr4_2:64928685-64928704 None:intergenic 30.0%
!! ATGTAGTTGACTCTATTTTG+TGG + chr4_2:64928754-64928773 Msa0615440:intron 30.0%
!! TGTAGTTGACTCTATTTTGT+GGG + chr4_2:64928755-64928774 Msa0615440:intron 30.0%
TTGTATACTCTTGTGGTTAT+AGG + chr4_2:64928808-64928827 Msa0615440:intron 30.0%
CTTGTGGTTATAGGATATAT+TGG + chr4_2:64928817-64928836 Msa0615440:intron 30.0%
AATGGAAGATTGAATAAGTG+TGG + chr4_2:64928892-64928911 Msa0615440:CDS 30.0%
! CAATATTCCCAAGCTTTTAT+CGG + chr4_2:64929156-64929175 Msa0615440:intron 30.0%
AAATAAGCCGATAAAAGCTT+GGG - chr4_2:64929166-64929185 None:intergenic 30.0%
AAAATAAGCCGATAAAAGCT+TGG - chr4_2:64929167-64929186 None:intergenic 30.0%
AAACTTAATTAGGGTCTGTT+TGG - chr4_2:64929348-64929367 None:intergenic 30.0%
TATAGTTCCTAACTTTCTTG+TGG + chr4_2:64929374-64929393 Msa0615440:intron 30.0%
CAAAAGCCAATAGATTAGAA+AGG - chr4_2:64929511-64929530 None:intergenic 30.0%
!!! CTTTCTAATCTATTGGCTTT+TGG + chr4_2:64929509-64929528 Msa0615440:intron 30.0%
!!! TCTAGTAGGCTTTTAAAACT+TGG + chr4_2:64929558-64929577 Msa0615440:intron 30.0%
!!! CTAGTAGGCTTTTAAAACTT+GGG + chr4_2:64929559-64929578 Msa0615440:intron 30.0%
TCATATATTGGAAATCACTG+TGG + chr4_2:64929640-64929659 Msa0615440:intron 30.0%
! TTATTATGCTTTTATGGGGT+GGG + chr4_2:64929792-64929811 Msa0615440:intron 30.0%
GGTATAGTAAATAGATAGAG+TGG - chr4_2:64929839-64929858 None:intergenic 30.0%
ACAAGCAACATAACATTCAA+CGG - chr4_2:64930214-64930233 None:intergenic 30.0%
ATTTGAGCAACCAATAGTTA+GGG - chr4_2:64930263-64930282 None:intergenic 30.0%
!!! AGTGTTGGGTTTTTTCTATT+AGG + chr4_2:64930367-64930386 Msa0615440:CDS 30.0%
!!! GTGTTGGGTTTTTTCTATTA+GGG + chr4_2:64930368-64930387 Msa0615440:CDS 30.0%
!!! ATTTTGAAACACAGAAGCTA+GGG - chr4_2:64930540-64930559 None:intergenic 30.0%
!!! AATTTTGAAACACAGAAGCT+AGG - chr4_2:64930541-64930560 None:intergenic 30.0%
AATCCATTTGTCATGATGAA+TGG + chr4_2:64930597-64930616 Msa0615440:three_prime_UTR 30.0%
CAATTTCTCTGGTAAGATCT+AGG + chr4_2:64928487-64928506 Msa0615440:intron 35.0%
AGATCTAGGTTTCTTCGATT+TGG + chr4_2:64928501-64928520 Msa0615440:intron 35.0%
!! TAGGTTTCTTCGATTTGGAT+TGG + chr4_2:64928506-64928525 Msa0615440:intron 35.0%
TTGTAACAGCAAATATGGTG+AGG + chr4_2:64928584-64928603 Msa0615440:intron 35.0%
TGTAACAGCAAATATGGTGA+GGG + chr4_2:64928585-64928604 Msa0615440:intron 35.0%
TTAATTAGGGTCTGTTTGGA+TGG - chr4_2:64929344-64929363 None:intergenic 35.0%
AGAATGACCACAAGAAAGTT+AGG - chr4_2:64929384-64929403 None:intergenic 35.0%
TGTTTGATCTCGACATAACA+AGG - chr4_2:64929478-64929497 None:intergenic 35.0%
CTACTAGACCTAACATAAAG+GGG - chr4_2:64929546-64929565 None:intergenic 35.0%
CCTACTAGACCTAACATAAA+GGG - chr4_2:64929547-64929566 None:intergenic 35.0%
!!! TAGGCTTTTAAAACTTGGGT+TGG + chr4_2:64929563-64929582 Msa0615440:intron 35.0%
ATATTGGAAATCACTGTGGT+AGG + chr4_2:64929644-64929663 Msa0615440:intron 35.0%
ATACGCCCAACCATTAATAA+TGG - chr4_2:64929766-64929785 None:intergenic 35.0%
! CTTATTATGCTTTTATGGGG+TGG + chr4_2:64929791-64929810 Msa0615440:intron 35.0%
TAGTAAATAGATAGAGTGGG+AGG - chr4_2:64929835-64929854 None:intergenic 35.0%
AGACAGAAACCTGTTCTATA+TGG + chr4_2:64930040-64930059 Msa0615440:intron 35.0%
GACAGAAACCTGTTCTATAT+GGG + chr4_2:64930041-64930060 Msa0615440:intron 35.0%
ACAGAAACCTGTTCTATATG+GGG + chr4_2:64930042-64930061 Msa0615440:intron 35.0%
CTGAAGTTGCTATCATCATA+TGG + chr4_2:64930184-64930203 Msa0615440:intron 35.0%
GATTTGAGCAACCAATAGTT+AGG - chr4_2:64930264-64930283 None:intergenic 35.0%
TTGCTCAAATCATGCAGTTT+GGG + chr4_2:64930273-64930292 Msa0615440:intron 35.0%
!! AATGTTGGTGGTAAAGTGTT+GGG + chr4_2:64930353-64930372 Msa0615440:CDS 35.0%
CAATTTCTCTGGTAAGATCT+AGG + chr4_2:64928487-64928506 Msa0615440:intron 35.0%
AGATCTAGGTTTCTTCGATT+TGG + chr4_2:64928501-64928520 Msa0615440:intron 35.0%
!! TAGGTTTCTTCGATTTGGAT+TGG + chr4_2:64928506-64928525 Msa0615440:intron 35.0%
TTGTAACAGCAAATATGGTG+AGG + chr4_2:64928584-64928603 Msa0615440:intron 35.0%
TGTAACAGCAAATATGGTGA+GGG + chr4_2:64928585-64928604 Msa0615440:intron 35.0%
TTAATTAGGGTCTGTTTGGA+TGG - chr4_2:64929344-64929363 None:intergenic 35.0%
AGAATGACCACAAGAAAGTT+AGG - chr4_2:64929384-64929403 None:intergenic 35.0%
TGTTTGATCTCGACATAACA+AGG - chr4_2:64929478-64929497 None:intergenic 35.0%
CTACTAGACCTAACATAAAG+GGG - chr4_2:64929546-64929565 None:intergenic 35.0%
CCTACTAGACCTAACATAAA+GGG - chr4_2:64929547-64929566 None:intergenic 35.0%
!!! TAGGCTTTTAAAACTTGGGT+TGG + chr4_2:64929563-64929582 Msa0615440:intron 35.0%
ATATTGGAAATCACTGTGGT+AGG + chr4_2:64929644-64929663 Msa0615440:intron 35.0%
ATACGCCCAACCATTAATAA+TGG - chr4_2:64929766-64929785 None:intergenic 35.0%
! CTTATTATGCTTTTATGGGG+TGG + chr4_2:64929791-64929810 Msa0615440:intron 35.0%
TAGTAAATAGATAGAGTGGG+AGG - chr4_2:64929835-64929854 None:intergenic 35.0%
AGACAGAAACCTGTTCTATA+TGG + chr4_2:64930040-64930059 Msa0615440:intron 35.0%
GACAGAAACCTGTTCTATAT+GGG + chr4_2:64930041-64930060 Msa0615440:intron 35.0%
ACAGAAACCTGTTCTATATG+GGG + chr4_2:64930042-64930061 Msa0615440:intron 35.0%
CTGAAGTTGCTATCATCATA+TGG + chr4_2:64930184-64930203 Msa0615440:intron 35.0%
GATTTGAGCAACCAATAGTT+AGG - chr4_2:64930264-64930283 None:intergenic 35.0%
TTGCTCAAATCATGCAGTTT+GGG + chr4_2:64930273-64930292 Msa0615440:intron 35.0%
!! AATGTTGGTGGTAAAGTGTT+GGG + chr4_2:64930353-64930372 Msa0615440:CDS 35.0%
TCAACGCAGAATTAGGGTTA+CGG - chr4_2:64928438-64928457 None:intergenic 40.0%
ACTGTCTCAACGCAGAATTA+GGG - chr4_2:64928444-64928463 None:intergenic 40.0%
AGAGAAATTGTGTGCTTGTG+CGG - chr4_2:64928477-64928496 None:intergenic 40.0%
ATGTACAATGCTGAGAAACG+TGG + chr4_2:64928637-64928656 Msa0615440:CDS 40.0%
TGTACAATGCTGAGAAACGT+GGG + chr4_2:64928638-64928657 Msa0615440:CDS 40.0%
AGGATGGCCTAATCATAACT+TGG - chr4_2:64928669-64928688 None:intergenic 40.0%
! CATGCTTTTGCATGACGATA+AGG - chr4_2:64928711-64928730 None:intergenic 40.0%
CTTATCGTCATGCAAAAGCA+TGG + chr4_2:64928709-64928728 Msa0615440:CDS 40.0%
! TCATGCAAAAGCATGGTATG+TGG + chr4_2:64928716-64928735 Msa0615440:intron 40.0%
!! TCGAATACGTTGATGATCAC+AGG + chr4_2:64928845-64928864 Msa0615440:CDS 40.0%
ATTAGTCCTCGTTTCGATGT+TGG + chr4_2:64928919-64928938 Msa0615440:CDS 40.0%
!! GTTGGTGTCAAAGAGATTGA+AGG + chr4_2:64928937-64928956 Msa0615440:CDS 40.0%
GTGTCAAAGAGATTGAAGGA+TGG + chr4_2:64928941-64928960 Msa0615440:CDS 40.0%
!! TTTTAGCTGACCTGTCTTGA+GGG - chr4_2:64928982-64929001 None:intergenic 40.0%
!!! TTTTTAGCTGACCTGTCTTG+AGG - chr4_2:64928983-64929002 None:intergenic 40.0%
TTTGTGTACCACATTGACGT+TGG + chr4_2:64929404-64929423 Msa0615440:intron 40.0%
!!! ATCTATTGGCTTTTGGTTCC+TGG + chr4_2:64929516-64929535 Msa0615440:intron 40.0%
CTAACATAAAGGGGAATTCC+AGG - chr4_2:64929537-64929556 None:intergenic 40.0%
CTGGAATTCCCCTTTATGTT+AGG + chr4_2:64929535-64929554 Msa0615440:intron 40.0%
CCCTTTATGTTAGGTCTAGT+AGG + chr4_2:64929544-64929563 Msa0615440:intron 40.0%
GCCTACTAGACCTAACATAA+AGG - chr4_2:64929548-64929567 None:intergenic 40.0%
!! AACTTGGGTTGGAATTGTAG+AGG + chr4_2:64929574-64929593 Msa0615440:intron 40.0%
!! ACTTGGGTTGGAATTGTAGA+GGG + chr4_2:64929575-64929594 Msa0615440:intron 40.0%
TAAGTCAAGACAAACACTGC+CGG - chr4_2:64929616-64929635 None:intergenic 40.0%
CGTAAGTGAGTGAGACATTT+GGG - chr4_2:64929676-64929695 None:intergenic 40.0%
CCAAATGTCTCACTCACTTA+CGG + chr4_2:64929674-64929693 Msa0615440:intron 40.0%
CAAATGTCTCACTCACTTAC+GGG + chr4_2:64929675-64929694 Msa0615440:intron 40.0%
GGTGGGAGTAGAATATTCAT+TGG + chr4_2:64929809-64929828 Msa0615440:intron 40.0%
CTGTATTCCCCATATAGAAC+AGG - chr4_2:64930052-64930071 None:intergenic 40.0%
TTCTTGTGGTCCCTAACTAT+TGG + chr4_2:64930250-64930269 Msa0615440:intron 40.0%
GTTGCTCAAATCATGCAGTT+TGG + chr4_2:64930272-64930291 Msa0615440:intron 40.0%
TGGTATCATGGATCATGAAG+AGG + chr4_2:64930319-64930338 Msa0615440:CDS 40.0%
!! GAATGTTGGTGGTAAAGTGT+TGG + chr4_2:64930352-64930371 Msa0615440:CDS 40.0%
TGGGTAAACTATTGTGCTCT+TGG + chr4_2:64930513-64930532 Msa0615440:three_prime_UTR 40.0%
AGGCCATTCATCATGACAAA+TGG - chr4_2:64930603-64930622 None:intergenic 40.0%
TCATACTTGGTATGCTCTAG+AGG - chr4_2:64930626-64930645 None:intergenic 40.0%
TCAACGCAGAATTAGGGTTA+CGG - chr4_2:64928438-64928457 None:intergenic 40.0%
ACTGTCTCAACGCAGAATTA+GGG - chr4_2:64928444-64928463 None:intergenic 40.0%
AGAGAAATTGTGTGCTTGTG+CGG - chr4_2:64928477-64928496 None:intergenic 40.0%
ATGTACAATGCTGAGAAACG+TGG + chr4_2:64928637-64928656 Msa0615440:CDS 40.0%
TGTACAATGCTGAGAAACGT+GGG + chr4_2:64928638-64928657 Msa0615440:CDS 40.0%
AGGATGGCCTAATCATAACT+TGG - chr4_2:64928669-64928688 None:intergenic 40.0%
! CATGCTTTTGCATGACGATA+AGG - chr4_2:64928711-64928730 None:intergenic 40.0%
CTTATCGTCATGCAAAAGCA+TGG + chr4_2:64928709-64928728 Msa0615440:CDS 40.0%
! TCATGCAAAAGCATGGTATG+TGG + chr4_2:64928716-64928735 Msa0615440:intron 40.0%
!! TCGAATACGTTGATGATCAC+AGG + chr4_2:64928845-64928864 Msa0615440:CDS 40.0%
ATTAGTCCTCGTTTCGATGT+TGG + chr4_2:64928919-64928938 Msa0615440:CDS 40.0%
!! GTTGGTGTCAAAGAGATTGA+AGG + chr4_2:64928937-64928956 Msa0615440:CDS 40.0%
GTGTCAAAGAGATTGAAGGA+TGG + chr4_2:64928941-64928960 Msa0615440:CDS 40.0%
!! TTTTAGCTGACCTGTCTTGA+GGG - chr4_2:64928982-64929001 None:intergenic 40.0%
!!! TTTTTAGCTGACCTGTCTTG+AGG - chr4_2:64928983-64929002 None:intergenic 40.0%
TTTGTGTACCACATTGACGT+TGG + chr4_2:64929404-64929423 Msa0615440:intron 40.0%
!!! ATCTATTGGCTTTTGGTTCC+TGG + chr4_2:64929516-64929535 Msa0615440:intron 40.0%
CTAACATAAAGGGGAATTCC+AGG - chr4_2:64929537-64929556 None:intergenic 40.0%
CTGGAATTCCCCTTTATGTT+AGG + chr4_2:64929535-64929554 Msa0615440:intron 40.0%
CCCTTTATGTTAGGTCTAGT+AGG + chr4_2:64929544-64929563 Msa0615440:intron 40.0%
GCCTACTAGACCTAACATAA+AGG - chr4_2:64929548-64929567 None:intergenic 40.0%
!! AACTTGGGTTGGAATTGTAG+AGG + chr4_2:64929574-64929593 Msa0615440:intron 40.0%
!! ACTTGGGTTGGAATTGTAGA+GGG + chr4_2:64929575-64929594 Msa0615440:intron 40.0%
TAAGTCAAGACAAACACTGC+CGG - chr4_2:64929616-64929635 None:intergenic 40.0%
CGTAAGTGAGTGAGACATTT+GGG - chr4_2:64929676-64929695 None:intergenic 40.0%
CCAAATGTCTCACTCACTTA+CGG + chr4_2:64929674-64929693 Msa0615440:intron 40.0%
CAAATGTCTCACTCACTTAC+GGG + chr4_2:64929675-64929694 Msa0615440:intron 40.0%
GGTGGGAGTAGAATATTCAT+TGG + chr4_2:64929809-64929828 Msa0615440:intron 40.0%
CTGTATTCCCCATATAGAAC+AGG - chr4_2:64930052-64930071 None:intergenic 40.0%
TTCTTGTGGTCCCTAACTAT+TGG + chr4_2:64930250-64930269 Msa0615440:intron 40.0%
GTTGCTCAAATCATGCAGTT+TGG + chr4_2:64930272-64930291 Msa0615440:intron 40.0%
TGGTATCATGGATCATGAAG+AGG + chr4_2:64930319-64930338 Msa0615440:CDS 40.0%
!! GAATGTTGGTGGTAAAGTGT+TGG + chr4_2:64930352-64930371 Msa0615440:CDS 40.0%
TGGGTAAACTATTGTGCTCT+TGG + chr4_2:64930513-64930532 Msa0615440:three_prime_UTR 40.0%
AGGCCATTCATCATGACAAA+TGG - chr4_2:64930603-64930622 None:intergenic 40.0%
TCATACTTGGTATGCTCTAG+AGG - chr4_2:64930626-64930645 None:intergenic 40.0%
CACTGTCTCAACGCAGAATT+AGG - chr4_2:64928445-64928464 None:intergenic 45.0%
GCACAAGCACACAATTTCTC+TGG + chr4_2:64928476-64928495 Msa0615440:five_prime_UTR 45.0%
!! GGAAGCGCCAAGTTATGATT+AGG + chr4_2:64928659-64928678 Msa0615440:CDS 45.0%
! GCAAAAGCATGGTATGTGGT+TGG + chr4_2:64928720-64928739 Msa0615440:intron 45.0%
!! TACGTTGATGATCACAGGTC+TGG + chr4_2:64928850-64928869 Msa0615440:CDS 45.0%
CAGGTCTGGCAAAATTGTTG+TGG + chr4_2:64928864-64928883 Msa0615440:CDS 45.0%
TTGACACCAACATCGAAACG+AGG - chr4_2:64928928-64928947 None:intergenic 45.0%
!! AGATTGAAGGATGGACTGCT+AGG + chr4_2:64928950-64928969 Msa0615440:CDS 45.0%
TCAAGACTCCAACGTCAATG+TGG - chr4_2:64929415-64929434 None:intergenic 45.0%
!! CTTGGGTTGGAATTGTAGAG+GGG + chr4_2:64929576-64929595 Msa0615440:intron 45.0%
AGGGGTTAACCAGAACAATC+CGG + chr4_2:64929594-64929613 Msa0615440:intron 45.0%
CCGTAAGTGAGTGAGACATT+TGG - chr4_2:64929677-64929696 None:intergenic 45.0%
CACTCACTTACGGGACTATT+TGG + chr4_2:64929684-64929703 Msa0615440:intron 45.0%
ATTGTCTTGACTACCTCTGC+TGG + chr4_2:64930299-64930318 Msa0615440:CDS 45.0%
ATGATCCATGATACCAGCAG+AGG - chr4_2:64930315-64930334 None:intergenic 45.0%
TCATGGATCATGAAGAGGCT+AGG + chr4_2:64930324-64930343 Msa0615440:CDS 45.0%
GAGGCTAGGAGAAAGAATGT+TGG + chr4_2:64930338-64930357 Msa0615440:CDS 45.0%
GCTAGGAGAAAGAATGTTGG+TGG + chr4_2:64930341-64930360 Msa0615440:CDS 45.0%
!! TACTTGGTATGCTCTAGAGG+AGG - chr4_2:64930623-64930642 None:intergenic 45.0%
CACTGTCTCAACGCAGAATT+AGG - chr4_2:64928445-64928464 None:intergenic 45.0%
GCACAAGCACACAATTTCTC+TGG + chr4_2:64928476-64928495 Msa0615440:five_prime_UTR 45.0%
!! GGAAGCGCCAAGTTATGATT+AGG + chr4_2:64928659-64928678 Msa0615440:CDS 45.0%
! GCAAAAGCATGGTATGTGGT+TGG + chr4_2:64928720-64928739 Msa0615440:intron 45.0%
!! TACGTTGATGATCACAGGTC+TGG + chr4_2:64928850-64928869 Msa0615440:CDS 45.0%
CAGGTCTGGCAAAATTGTTG+TGG + chr4_2:64928864-64928883 Msa0615440:CDS 45.0%
TTGACACCAACATCGAAACG+AGG - chr4_2:64928928-64928947 None:intergenic 45.0%
!! AGATTGAAGGATGGACTGCT+AGG + chr4_2:64928950-64928969 Msa0615440:CDS 45.0%
TCAAGACTCCAACGTCAATG+TGG - chr4_2:64929415-64929434 None:intergenic 45.0%
!! CTTGGGTTGGAATTGTAGAG+GGG + chr4_2:64929576-64929595 Msa0615440:intron 45.0%
AGGGGTTAACCAGAACAATC+CGG + chr4_2:64929594-64929613 Msa0615440:intron 45.0%
CCGTAAGTGAGTGAGACATT+TGG - chr4_2:64929677-64929696 None:intergenic 45.0%
CACTCACTTACGGGACTATT+TGG + chr4_2:64929684-64929703 Msa0615440:intron 45.0%
ATTGTCTTGACTACCTCTGC+TGG + chr4_2:64930299-64930318 Msa0615440:CDS 45.0%
ATGATCCATGATACCAGCAG+AGG - chr4_2:64930315-64930334 None:intergenic 45.0%
TCATGGATCATGAAGAGGCT+AGG + chr4_2:64930324-64930343 Msa0615440:CDS 45.0%
GAGGCTAGGAGAAAGAATGT+TGG + chr4_2:64930338-64930357 Msa0615440:CDS 45.0%
GCTAGGAGAAAGAATGTTGG+TGG + chr4_2:64930341-64930360 Msa0615440:CDS 45.0%
!! TACTTGGTATGCTCTAGAGG+AGG - chr4_2:64930623-64930642 None:intergenic 45.0%
!! AAATTAAAATATTAAAAGAT+GGG - chr4_2:64929953-64929972 None:intergenic 5.0%
!! TAAATTAAAATATTAAAAGA+TGG - chr4_2:64929954-64929973 None:intergenic 5.0%
!! AAATTAAAATATTAAAAGAT+GGG - chr4_2:64929953-64929972 None:intergenic 5.0%
!! TAAATTAAAATATTAAAAGA+TGG - chr4_2:64929954-64929973 None:intergenic 5.0%
GGGTTACGGAAGCCTCAAAA+TGG - chr4_2:64928424-64928443 None:intergenic 50.0%
TAGGCTTCTTCCCTCAAGAC+AGG + chr4_2:64928969-64928988 Msa0615440:CDS 50.0%
CAAACACTGCCGGATTGTTC+TGG - chr4_2:64929606-64929625 None:intergenic 50.0%
GACTACCTCTGCTGGTATCA+TGG + chr4_2:64930307-64930326 Msa0615440:CDS 50.0%
GGGTTACGGAAGCCTCAAAA+TGG - chr4_2:64928424-64928443 None:intergenic 50.0%
TAGGCTTCTTCCCTCAAGAC+AGG + chr4_2:64928969-64928988 Msa0615440:CDS 50.0%
CAAACACTGCCGGATTGTTC+TGG - chr4_2:64929606-64929625 None:intergenic 50.0%
GACTACCTCTGCTGGTATCA+TGG + chr4_2:64930307-64930326 Msa0615440:CDS 50.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 64928404 64930654 64928404 ID=Msa0615440;Name=Msa0615440
chr4_2 mRNA 64928404 64930654 64928404 ID=Msa0615440-mRNA-1;Parent=Msa0615440;Name=Msa0615440-mRNA-1;_AED=0.12;_eAED=0.12;_QI=99|1|1|1|0.66|0.5|4|266|130
chr4_2 exon 64928404 64928497 64928404 ID=Msa0615440-mRNA-1:exon:18265;Parent=Msa0615440-mRNA-1
chr4_2 exon 64928593 64928730 64928593 ID=Msa0615440-mRNA-1:exon:18266;Parent=Msa0615440-mRNA-1
chr4_2 exon 64928830 64928990 64928830 ID=Msa0615440-mRNA-1:exon:18267;Parent=Msa0615440-mRNA-1
chr4_2 exon 64930290 64930654 64930290 ID=Msa0615440-mRNA-1:exon:18268;Parent=Msa0615440-mRNA-1
chr4_2 five_prime_UTR 64928404 64928497 64928404 ID=Msa0615440-mRNA-1:five_prime_utr;Parent=Msa0615440-mRNA-1
chr4_2 five_prime_UTR 64928593 64928597 64928593 ID=Msa0615440-mRNA-1:five_prime_utr;Parent=Msa0615440-mRNA-1
chr4_2 CDS 64928598 64928730 64928598 ID=Msa0615440-mRNA-1:cds;Parent=Msa0615440-mRNA-1
chr4_2 CDS 64928830 64928990 64928830 ID=Msa0615440-mRNA-1:cds;Parent=Msa0615440-mRNA-1
chr4_2 CDS 64930290 64930388 64930290 ID=Msa0615440-mRNA-1:cds;Parent=Msa0615440-mRNA-1
chr4_2 three_prime_UTR 64930389 64930654 64930389 ID=Msa0615440-mRNA-1:three_prime_utr;Parent=Msa0615440-mRNA-1
Gene Sequence

>Msa0615440

ATGGTGAGGGTTAGTGTTTTGAACGATGCACTGAAGAGCATGTACAATGCTGAGAAACGTGGGAAGCGCCAAGTTATGATTAGGCCATCCTCAAAAGTGATTATCAAATTCCTTATCGTCATGCAAAAGCATGGATATATTGGAGAGTTCGAATACGTTGATGATCACAGGTCTGGCAAAATTGTTGTGGAATTGAATGGAAGATTGAATAAGTGTGGTGTTATTAGTCCTCGTTTCGATGTTGGTGTCAAAGAGATTGAAGGATGGACTGCTAGGCTTCTTCCCTCAAGACAGTTTGGGTATATTGTCTTGACTACCTCTGCTGGTATCATGGATCATGAAGAGGCTAGGAGAAAGAATGTTGGTGGTAAAGTGTTGGGTTTTTTCTATTAG

Protein sequence

>Msa0615440

MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY*