Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0487550 | KEH32786.1 | 82.400 | 125 | 22 | 0 | 386 | 510 | 460 | 584 | 2.12e-60 | 221 |
| Msa0487550 | KEH32786.1 | 95.673 | 416 | 8 | 2 | 1 | 408 | 1 | 414 | 0.0 | 781 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0487550 | sp|O23212|U2A2A_ARATH | 65.396 | 341 | 102 | 8 | 80 | 408 | 27 | 363 | 2.05e-111 | 346 |
| Msa0487550 | sp|O23212|U2A2A_ARATH | 60.606 | 165 | 63 | 1 | 386 | 550 | 409 | 571 | 3.60e-62 | 217 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0487550 | A0A072UTX0 | 82.400 | 125 | 22 | 0 | 386 | 510 | 460 | 584 | 1.01e-60 | 221 |
| Msa0487550 | A0A072UTX0 | 95.673 | 416 | 8 | 2 | 1 | 408 | 1 | 414 | 0.0 | 781 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0027600 | Msa0487550 | 0.801468 | 8.877313e-49 | -8.615850e-47 |
| Msa0034110 | Msa0487550 | 0.828611 | 8.167380e-55 | -8.615850e-47 |
| Msa0068680 | Msa0487550 | 0.804833 | 1.786478e-49 | -8.615850e-47 |
| Msa0074700 | Msa0487550 | 0.807168 | 5.765582e-50 | -8.615850e-47 |
| Msa0075360 | Msa0487550 | 0.822112 | 2.819919e-53 | -8.615850e-47 |
| Msa0079070 | Msa0487550 | 0.812137 | 4.932284e-51 | -8.615850e-47 |
| Msa0091460 | Msa0487550 | 0.811584 | 6.507821e-51 | -8.615850e-47 |
| Msa0102200 | Msa0487550 | 0.828141 | 1.060303e-54 | -8.615850e-47 |
| Msa0114060 | Msa0487550 | 0.818772 | 1.646607e-52 | -8.615850e-47 |
| Msa0115540 | Msa0487550 | 0.826654 | 2.409031e-54 | -8.615850e-47 |
| Msa0127650 | Msa0487550 | 0.804918 | 1.715395e-49 | -8.615850e-47 |
| Msa0159930 | Msa0487550 | 0.803497 | 3.388766e-49 | -8.615850e-47 |
| Msa0174110 | Msa0487550 | 0.811102 | 8.282130e-51 | -8.615850e-47 |
| Msa0188900 | Msa0487550 | 0.835014 | 2.147339e-56 | -8.615850e-47 |
| Msa0231370 | Msa0487550 | 0.821401 | 4.116753e-53 | -8.615850e-47 |
| Msa0376350 | Msa0487550 | 0.806429 | 8.261759e-50 | -8.615850e-47 |
| Msa0392400 | Msa0487550 | 0.962116 | 1.703821e-120 | -8.615850e-47 |
| Msa0392440 | Msa0487550 | 0.937319 | 4.200392e-98 | -8.615850e-47 |
| Msa0424790 | Msa0487550 | 0.807457 | 5.008545e-50 | -8.615850e-47 |
| Msa0440750 | Msa0487550 | 0.816587 | 5.121948e-52 | -8.615850e-47 |
| Msa0260780 | Msa0487550 | 0.809452 | 1.879379e-50 | -8.615850e-47 |
| Msa0345970 | Msa0487550 | 0.809366 | 1.960614e-50 | -8.615850e-47 |
| Msa0487550 | Msa0487610 | 0.984165 | 8.996887e-160 | -8.615850e-47 |
| Msa0487550 | Msa0516170 | 0.805754 | 1.145885e-49 | -8.615850e-47 |
| Msa0487550 | Msa0602390 | 0.802260 | 6.103555e-49 | -8.615850e-47 |
| Msa0487550 | Msa0602460 | 0.802707 | 4.937522e-49 | -8.615850e-47 |
| Msa0487550 | Msa0616160 | 0.826131 | 3.210441e-54 | -8.615850e-47 |
| Msa0487550 | Msa0681270 | 0.804487 | 2.110006e-49 | -8.615850e-47 |
| Msa0487550 | Msa0709400 | 0.807350 | 5.277332e-50 | -8.615850e-47 |
| Msa0487550 | Msa0790600 | 0.805749 | 1.148680e-49 | -8.615850e-47 |
| Msa0487550 | Msa0806790 | 0.815155 | 1.068799e-51 | -8.615850e-47 |
| Msa0487550 | Msa0820120 | 0.817022 | 4.089739e-52 | -8.615850e-47 |
| Msa0487550 | Msa0824960 | 0.806369 | 8.507812e-50 | -8.615850e-47 |
| Msa0487550 | Msa0880950 | 0.801367 | 9.309401e-49 | -8.615850e-47 |
| Msa0487550 | Msa0909740 | 0.824548 | 7.606217e-54 | -8.615850e-47 |
| Msa0487550 | Msa0945970 | 0.818860 | 1.572238e-52 | -8.615850e-47 |
| Msa0487550 | Msa1018100 | 0.800680 | 1.286693e-48 | -8.615850e-47 |
| Msa0487550 | Msa1124960 | 0.810624 | 1.050653e-50 | -8.615850e-47 |
| Msa0487550 | Msa1204530 | 0.802852 | 4.608171e-49 | -8.615850e-47 |
| Msa0487550 | Msa1225130 | 0.803100 | 4.094927e-49 | -8.615850e-47 |
| Msa0487550 | Msa1279400 | 0.820077 | 8.296635e-53 | -8.615850e-47 |
| Msa0487550 | Msa1331000 | 0.819553 | 1.093577e-52 | -8.615850e-47 |
| Msa0487550 | Msa1399550 | 0.807968 | 3.900098e-50 | -8.615850e-47 |
| Msa0487550 | Msa1409700 | 0.801153 | 1.029776e-48 | -8.615850e-47 |
| Msa0487550 | Msa1452240 | 0.811150 | 8.083045e-51 | -8.615850e-47 |
| Msa0487550 | Msa1453910 | 0.802210 | 6.251026e-49 | -8.615850e-47 |
| Msa0487550 | Msa1460050 | 0.819840 | 9.403081e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0487550 | MtrunA17_Chr3g0077591 | 100.000 | 160 | 0 | 0 | 249 | 408 | 1 | 160 | 4.38e-111 | 335 |
| Msa0487550 | MtrunA17_Chr3g0077591 | 88.024 | 167 | 20 | 0 | 386 | 552 | 206 | 372 | 6.04e-102 | 312 |
| Msa0487550 | MtrunA17_Chr4g0013971 | 86.471 | 170 | 23 | 0 | 239 | 408 | 48 | 217 | 1.97e-100 | 310 |
| Msa0487550 | MtrunA17_Chr4g0013971 | 73.054 | 167 | 43 | 1 | 386 | 552 | 263 | 427 | 2.73e-81 | 260 |
| Msa0487550 | MtrunA17_Chr2g0281891 | 56.766 | 303 | 113 | 6 | 108 | 408 | 16 | 302 | 4.99e-87 | 278 |
| Msa0487550 | MtrunA17_Chr2g0281891 | 48.538 | 171 | 74 | 2 | 392 | 551 | 354 | 521 | 1.04e-44 | 165 |
| Msa0487550 | MtrunA17_Chr3g0077601 | 86.755 | 151 | 10 | 2 | 1 | 143 | 1 | 149 | 1.64e-47 | 166 |
| Msa0487550 | MtrunA17_Chr1g0166661 | 23.478 | 345 | 187 | 11 | 217 | 501 | 515 | 842 | 3.15e-14 | 76.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0487550 | AT4G36690.2 | 65.396 | 341 | 102 | 8 | 80 | 408 | 27 | 363 | 1.46e-113 | 348 |
| Msa0487550 | AT4G36690.2 | 43.609 | 133 | 68 | 2 | 386 | 513 | 409 | 539 | 1.42e-26 | 114 |
| Msa0487550 | AT4G36690.3 | 65.396 | 341 | 102 | 8 | 80 | 408 | 27 | 363 | 3.39e-113 | 348 |
| Msa0487550 | AT4G36690.3 | 52.525 | 99 | 45 | 1 | 386 | 484 | 409 | 505 | 1.36e-25 | 111 |
| Msa0487550 | AT4G36690.1 | 65.396 | 341 | 102 | 8 | 80 | 408 | 27 | 363 | 2.09e-112 | 346 |
| Msa0487550 | AT4G36690.1 | 60.606 | 165 | 63 | 1 | 386 | 550 | 409 | 571 | 3.66e-63 | 217 |
| Msa0487550 | AT4G36690.4 | 61.398 | 329 | 93 | 10 | 86 | 408 | 41 | 341 | 1.79e-111 | 343 |
| Msa0487550 | AT4G36690.4 | 60.606 | 165 | 63 | 1 | 386 | 550 | 387 | 549 | 2.43e-63 | 217 |
| Msa0487550 | AT1G60900.1 | 80.189 | 212 | 38 | 2 | 199 | 408 | 170 | 379 | 6.98e-97 | 306 |
| Msa0487550 | AT1G60900.1 | 65.000 | 160 | 54 | 1 | 392 | 551 | 431 | 588 | 1.19e-65 | 224 |
| Msa0487550 | AT1G60830.2 | 70.909 | 110 | 32 | 0 | 442 | 551 | 1 | 110 | 6.63e-52 | 173 |
| Msa0487550 | AT1G60830.1 | 70.909 | 110 | 32 | 0 | 442 | 551 | 1 | 110 | 6.63e-52 | 173 |
| Msa0487550 | AT2G33435.1 | 25.114 | 219 | 143 | 4 | 184 | 384 | 763 | 978 | 8.48e-15 | 78.6 |
| Msa0487550 | AT5G16780.3 | 40.833 | 120 | 68 | 2 | 51 | 169 | 28 | 145 | 8.77e-12 | 68.6 |
| Msa0487550 | AT5G16780.1 | 40.833 | 120 | 68 | 2 | 51 | 169 | 28 | 145 | 8.77e-12 | 68.6 |
| Msa0487550 | AT5G16780.2 | 40.833 | 120 | 68 | 2 | 51 | 169 | 28 | 145 | 8.77e-12 | 68.6 |
Find 195 sgRNAs with CRISPR-Local
Find 473 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACAATATCTGCAGGTAATT+TGG | 0.109716 | 3_4:+6561995 | Msa0487550:intron |
| ATGCAGGGATTATTATATTT+TGG | 0.152376 | 3_4:+6562808 | Msa0487550:three_prime_UTR |
| AAAGAGAGAGACAGAGAAAA+TGG | 0.193147 | 3_4:+6556404 | Msa0487550:exon |
| GGAGAGAAAAGGAGAGAAAA+AGG | 0.195497 | 3_4:+6557795 | Msa0487550:CDS |
| ATCCAAAGCCATTGCATTGC+TGG | 0.249411 | 3_4:-6560983 | None:intergenic |
| GTAGGCAGGGGAAACATATT+TGG | 0.249719 | 3_4:-6560209 | None:intergenic |
| GGACTGAATGGAAGAAAATT+TGG | 0.262626 | 3_4:+6562675 | Msa0487550:CDS |
| CGACAGGAATGCTCCAAATT+TGG | 0.265569 | 3_4:+6561780 | Msa0487550:CDS |
| TATGATCTTCTTCTTGTTGT+TGG | 0.275831 | 3_4:-6556461 | None:intergenic |
| GGACTATCACCTGGCTCTGC+TGG | 0.288932 | 3_4:+6561219 | Msa0487550:CDS |
| CTAATTGTGTTCTTGTTACT+TGG | 0.313146 | 3_4:+6562761 | Msa0487550:exon |
| TGACAAGAAGTTTGCCTTTG+TGG | 0.314678 | 3_4:+6560939 | Msa0487550:CDS |
| GGTTAGGTTGGCTTGGCCCT+AGG | 0.315523 | 3_4:-6561173 | None:intergenic |
| CTAAGCCCAGATTAAGGTTT+GGG | 0.324353 | 3_4:-6561194 | None:intergenic |
| AACTTTCTTCAGTCAGGTTA+TGG | 0.329007 | 3_4:+6560855 | Msa0487550:CDS |
| GTCCAACTAAGCCCAGATTA+AGG | 0.333587 | 3_4:-6561200 | None:intergenic |
| GACTATCACCTGGCTCTGCT+GGG | 0.339084 | 3_4:+6561220 | Msa0487550:CDS |
| GTACTTGCAGGTCAGATCTC+TGG | 0.343612 | 3_4:+6560158 | Msa0487550:intron |
| ACCTAACCCAAACCTTAATC+TGG | 0.348497 | 3_4:+6561188 | Msa0487550:CDS |
| GGGGCAAGTCCTGCTATTCC+TGG | 0.350763 | 3_4:+6560179 | Msa0487550:CDS |
| GGTTCTACCAAAGCCCGTTC+TGG | 0.352285 | 3_4:+6562654 | Msa0487550:CDS |
| AGAGAAAAGGAGCGGGAGAA+TGG | 0.360404 | 3_4:+6557773 | Msa0487550:CDS |
| ATGCTCTCTTGTTCAGGTTT+AGG | 0.362273 | 3_4:-6561513 | None:intergenic |
| GCAGGGACAGGGTCAGAGAT+AGG | 0.363846 | 3_4:+6557891 | Msa0487550:CDS |
| TACTTGCAGGTCAGATCTCT+GGG | 0.364212 | 3_4:+6560159 | Msa0487550:intron |
| GAGAAAAGGAGCGGGAGAAT+GGG | 0.371959 | 3_4:+6557774 | Msa0487550:CDS |
| TTGGGTGCTACTGGTGTTGC+AGG | 0.372909 | 3_4:+6559443 | Msa0487550:CDS |
| TGTTCAGGTTTAGGCTGCAT+TGG | 0.376618 | 3_4:-6561504 | None:intergenic |
| TCTCCCTGTCTTGCCAGTTC+AGG | 0.382609 | 3_4:+6560338 | Msa0487550:CDS |
| AAAGGGATAAGGGAAGAGAC+AGG | 0.384703 | 3_4:+6557813 | Msa0487550:CDS |
| CCCTGAGCAAATTTGTTCTC+TGG | 0.391081 | 3_4:-6562726 | None:intergenic |
| ATTAAAATGCTCTCTTGTTC+AGG | 0.391630 | 3_4:-6561519 | None:intergenic |
| GTTCAGGTTTAGGCTGCATT+GGG | 0.392860 | 3_4:-6561503 | None:intergenic |
| AACATATTTGGAAACATTCC+AGG | 0.392880 | 3_4:-6560197 | None:intergenic |
| TTGGAGTATGCTGATGTTGA+TGG | 0.396211 | 3_4:+6562633 | Msa0487550:CDS |
| AGCCAGCAATGCAATGGCTT+TGG | 0.400570 | 3_4:+6560981 | Msa0487550:CDS |
| TCAGAGATAGGGAGAGAAGC+AGG | 0.402248 | 3_4:+6557903 | Msa0487550:CDS |
| TGTTCTAATACAATAATACT+TGG | 0.404534 | 3_4:+6562902 | Msa0487550:three_prime_UTR |
| TCATCATCTTTGAGCTCATC+AGG | 0.405363 | 3_4:-6561729 | None:intergenic |
| GTTTCCCCTGCCTACAAATC+AGG | 0.406555 | 3_4:+6560217 | Msa0487550:CDS |
| ACAGAGAGAGTGAGAGAAGC+AGG | 0.408072 | 3_4:+6557873 | Msa0487550:CDS |
| TCAACAGGTGGTGGTGGTGG+TGG | 0.412949 | 3_4:-6556510 | None:intergenic |
| TTTATTCAAGATTTATATGC+AGG | 0.413958 | 3_4:+6562792 | Msa0487550:three_prime_UTR |
| AGTCAGGTTATGGCTACAAT+TGG | 0.415102 | 3_4:+6560865 | Msa0487550:CDS |
| CCGTCTCTAGCTGCTGCCCT+AGG | 0.416793 | 3_4:+6561156 | Msa0487550:CDS |
| AGTTGCAACTTTCTTCAGTC+AGG | 0.418446 | 3_4:+6560849 | Msa0487550:CDS |
| TCACCATCAGGCCGTGGGCG+AGG | 0.421457 | 3_4:-6562032 | None:intergenic |
| TCCAGAGAACAAATTTGCTC+AGG | 0.424734 | 3_4:+6562725 | Msa0487550:CDS |
| ATAGGGAGAGAAGCAGGGAC+AGG | 0.428035 | 3_4:+6557909 | Msa0487550:CDS |
| TCTTCCATTCAGTCCAGAAC+GGG | 0.431470 | 3_4:-6562667 | None:intergenic |
| ACTAAGCCCAGATTAAGGTT+TGG | 0.432382 | 3_4:-6561195 | None:intergenic |
| GTTAGGTTGGCTTGGCCCTA+GGG | 0.433054 | 3_4:-6561172 | None:intergenic |
| ACCTTTGTTGCCACCAATGC+TGG | 0.434466 | 3_4:-6561681 | None:intergenic |
| AACCTTAATCTGGGCTTAGT+TGG | 0.436600 | 3_4:+6561198 | Msa0487550:CDS |
| GCGGGAGAATGGGAGAGAAA+AGG | 0.437926 | 3_4:+6557784 | Msa0487550:CDS |
| ATAGGGATAGGGAGAAAAGC+AGG | 0.441332 | 3_4:+6557849 | Msa0487550:CDS |
| ACAGGGAACGCGATCGGGAT+GGG | 0.441548 | 3_4:+6557957 | Msa0487550:CDS |
| GTGAGATCTTCTTCATCAAC+AGG | 0.443011 | 3_4:-6556525 | None:intergenic |
| ATAGCCTGAACTGGCAAGAC+AGG | 0.443744 | 3_4:-6560342 | None:intergenic |
| GTGAGAGAAAGGAAAGGGTA+AGG | 0.445978 | 3_4:+6558041 | Msa0487550:CDS |
| CAAAGACAGGGAACGCGATC+GGG | 0.446135 | 3_4:+6557952 | Msa0487550:CDS |
| AAAATACCTGATTTGTAGGC+AGG | 0.446527 | 3_4:-6560223 | None:intergenic |
| CCCAGATTAAGGTTTGGGTT+AGG | 0.447397 | 3_4:-6561189 | None:intergenic |
| AGGTTTGGGTTAGGTTGGCT+TGG | 0.448251 | 3_4:-6561180 | None:intergenic |
| TGCATTGCTGGCTTCTTCAA+CGG | 0.451937 | 3_4:-6560971 | None:intergenic |
| TCATCAACAGGTGGTGGTGG+TGG | 0.453350 | 3_4:-6556513 | None:intergenic |
| AAGAGAGAGACAGAGAAAAT+GGG | 0.457112 | 3_4:+6556405 | Msa0487550:exon |
| ATTCAGTCCAGAACGGGCTT+TGG | 0.457567 | 3_4:-6562661 | None:intergenic |
| ATCCCTCGCCCACGGCCTGA+TGG | 0.463255 | 3_4:+6562029 | Msa0487550:CDS |
| AAATACGTTGGATTTGGAAT+CGG | 0.463999 | 3_4:-6556547 | None:intergenic |
| ATAGAAGCAGGGATAGGGAT+AGG | 0.464430 | 3_4:+6557837 | Msa0487550:CDS |
| AGGGTGCACCAGTGAAGGTC+AGG | 0.465241 | 3_4:+6561115 | Msa0487550:intron |
| CAGGGAACGCGATCGGGATG+GGG | 0.465625 | 3_4:+6557958 | Msa0487550:CDS |
| AAGCAAACCTTTCCAACTCC+AGG | 0.469840 | 3_4:-6562062 | None:intergenic |
| CCTGATGGTGAACTGTGCCC+TGG | 0.472461 | 3_4:+6562044 | Msa0487550:CDS |
| GCAAAGACAGGGAACGCGAT+CGG | 0.473825 | 3_4:+6557951 | Msa0487550:CDS |
| CACAGTTCACCATCAGGCCG+TGG | 0.474395 | 3_4:-6562038 | None:intergenic |
| GATTAAGGTTTGGGTTAGGT+TGG | 0.474494 | 3_4:-6561185 | None:intergenic |
| AGAGTGAGAGAAGCAGGGAC+AGG | 0.475476 | 3_4:+6557879 | Msa0487550:CDS |
| ACGCGATCGGGATGGGGAGA+AGG | 0.475708 | 3_4:+6557964 | Msa0487550:CDS |
| CACCATCAGGCCGTGGGCGA+GGG | 0.476970 | 3_4:-6562031 | None:intergenic |
| ATCGGGATGGGGAGAAGGAA+AGG | 0.478929 | 3_4:+6557969 | Msa0487550:CDS |
| ATCCTCCAGAAGTAGAGAAA+AGG | 0.482000 | 3_4:+6557760 | Msa0487550:CDS |
| GGAGGAAACACCGCTGGTCC+AGG | 0.482975 | 3_4:+6560886 | Msa0487550:CDS |
| ACAGGGATAGAAGCAGGGAT+AGG | 0.486106 | 3_4:+6557831 | Msa0487550:CDS |
| GAAGAGACAGGGATAGAAGC+AGG | 0.487067 | 3_4:+6557825 | Msa0487550:CDS |
| TCTTCATCAACAGGTGGTGG+TGG | 0.488161 | 3_4:-6556516 | None:intergenic |
| CCAGGGCACAGTTCACCATC+AGG | 0.489395 | 3_4:-6562044 | None:intergenic |
| GTAGGTCTCCTGACCTTCAC+TGG | 0.489485 | 3_4:-6561123 | None:intergenic |
| ATGGGGAGAAGGAAAGGGAG+AGG | 0.489505 | 3_4:+6557975 | Msa0487550:CDS |
| TAGAAGCAGGGATAGGGATA+GGG | 0.492088 | 3_4:+6557838 | Msa0487550:CDS |
| ACAGCAGCAGATTGCTCTGC+AGG | 0.492821 | 3_4:+6561548 | Msa0487550:CDS |
| CTCTATGATGGTCACGGTCA+CGG | 0.497953 | 3_4:-6558000 | None:intergenic |
| CACCCAATATCGCAGAAGTA+GGG | 0.498077 | 3_4:-6559427 | None:intergenic |
| ATAGTGAGAAAAGCAAAGAC+AGG | 0.498726 | 3_4:+6557939 | Msa0487550:CDS |
| GTTCTCGTTCACGCTCCAAA+AGG | 0.501480 | 3_4:+6558409 | Msa0487550:CDS |
| TCTGCGATATTGGGTGCTAC+TGG | 0.502664 | 3_4:+6559434 | Msa0487550:CDS |
| GGAAACATTCCAGGAATAGC+AGG | 0.503610 | 3_4:-6560188 | None:intergenic |
| ATTAGAACAAATCCTCCATC+AGG | 0.508317 | 3_4:-6562888 | None:intergenic |
| TGTTGTGTCATAGCCTGAAC+TGG | 0.509316 | 3_4:-6560351 | None:intergenic |
| CAGGGACAGGGTCAGAGATA+GGG | 0.509318 | 3_4:+6557892 | Msa0487550:CDS |
| CAGGTTATGGCTACAATTGG+AGG | 0.509339 | 3_4:+6560868 | Msa0487550:CDS |
| TAGGGAGAGAAGCAGGGACA+GGG | 0.509753 | 3_4:+6557910 | Msa0487550:CDS |
| CAGGGATCGTAGTGAGAGAA+AGG | 0.516139 | 3_4:+6558030 | Msa0487550:CDS |
| CAGGGATAGAAGCAGGGATA+GGG | 0.516826 | 3_4:+6557832 | Msa0487550:CDS |
| AGTTTGCCTTTGTGGAAATG+AGG | 0.516873 | 3_4:+6560947 | Msa0487550:CDS |
| GCACCCAATATCGCAGAAGT+AGG | 0.517661 | 3_4:-6559428 | None:intergenic |
| TCGGGATGGGGAGAAGGAAA+GGG | 0.521356 | 3_4:+6557970 | Msa0487550:CDS |
| TTTGCTCAGGGCGATTATGA+AGG | 0.523159 | 3_4:+6562738 | Msa0487550:CDS |
| GGCTTAGTTGGACTATCACC+TGG | 0.524073 | 3_4:+6561210 | Msa0487550:CDS |
| TATGTTACAACCAGCATTGG+TGG | 0.524223 | 3_4:+6561671 | Msa0487550:CDS |
| CTCTCCTACAGCTAATGAGC+AGG | 0.525438 | 3_4:+6560520 | Msa0487550:CDS |
| AGTTCAGGCTATGACACAAC+AGG | 0.528917 | 3_4:+6560353 | Msa0487550:CDS |
| GGTGAACTGTGCCCTGGAGT+TGG | 0.530525 | 3_4:+6562050 | Msa0487550:CDS |
| GGATTTCTAATGAATTATTG+TGG | 0.530896 | 3_4:+6562829 | Msa0487550:three_prime_UTR |
| AAAGCCCGTTCTGGACTGAA+TGG | 0.531994 | 3_4:+6562663 | Msa0487550:CDS |
| ATGATCGAGAGGATAGGCAT+AGG | 0.534779 | 3_4:+6558322 | Msa0487550:CDS |
| GATTCTTGATGATATGCGAC+AGG | 0.535785 | 3_4:+6561764 | Msa0487550:CDS |
| TCGTAGTGAGAGAAAGGAAA+GGG | 0.539193 | 3_4:+6558036 | Msa0487550:CDS |
| ACTTATGTTACAACCAGCAT+TGG | 0.539237 | 3_4:+6561668 | Msa0487550:CDS |
| AATTCAGGGTGCACCAGTGA+AGG | 0.539964 | 3_4:+6561110 | Msa0487550:intron |
| CGTCTCTAGCTGCTGCCCTA+GGG | 0.541292 | 3_4:+6561157 | Msa0487550:CDS |
| GACAGGGAACGCGATCGGGA+TGG | 0.543148 | 3_4:+6557956 | Msa0487550:CDS |
| CCCTGTGGCGATCTCTATGA+TGG | 0.547978 | 3_4:-6558012 | None:intergenic |
| AGGGAGAGAAGCAGGGACAG+GGG | 0.548129 | 3_4:+6557911 | Msa0487550:CDS |
| ACTATCACCTGGCTCTGCTG+GGG | 0.549414 | 3_4:+6561221 | Msa0487550:CDS |
| CTCGATCTAGATCAAGGTCA+AGG | 0.550814 | 3_4:+6558358 | Msa0487550:CDS |
| GGGGACTTGATGGTCCTGAT+CGG | 0.551785 | 3_4:+6561241 | Msa0487550:CDS |
| CAGAAGTAGAGAAAAGGAGC+GGG | 0.551899 | 3_4:+6557766 | Msa0487550:CDS |
| CTATCACCTGGCTCTGCTGG+GGG | 0.554838 | 3_4:+6561222 | Msa0487550:CDS |
| AAATACCTGATTTGTAGGCA+GGG | 0.555176 | 3_4:-6560222 | None:intergenic |
| TGAGAGAAAGGAAAGGGTAA+GGG | 0.556831 | 3_4:+6558042 | Msa0487550:CDS |
| CAAAGGCAAACTTCTTGTCA+TGG | 0.559361 | 3_4:-6560936 | None:intergenic |
| ACATTCACAACTGCATCACC+TGG | 0.561956 | 3_4:-6560904 | None:intergenic |
| GGCTACACGACATGCTAGAC+GGG | 0.562074 | 3_4:+6560481 | Msa0487550:intron |
| CCTAACCCAAACCTTAATCT+GGG | 0.564603 | 3_4:+6561189 | Msa0487550:CDS |
| TTCTTCCATTCAGTCCAGAA+CGG | 0.564603 | 3_4:-6562668 | None:intergenic |
| TGGGGAGAAGGAAAGGGAGA+GGG | 0.564967 | 3_4:+6557976 | Msa0487550:CDS |
| TGTTTGTTGGTATAGACGAA+GGG | 0.568551 | 3_4:+6558296 | Msa0487550:intron |
| AGCAATGCAATGGCTTTGGA+TGG | 0.568787 | 3_4:+6560985 | Msa0487550:CDS |
| ACAGAAGCCGAGGCTATGAC+AGG | 0.570049 | 3_4:+6558086 | Msa0487550:CDS |
| GCCGGTCTCGATCTAGATCA+AGG | 0.570517 | 3_4:+6558352 | Msa0487550:CDS |
| ACCAGCATTGGTGGCAACAA+AGG | 0.576598 | 3_4:+6561680 | Msa0487550:CDS |
| AAGACAGGGAGAGCACTAAA+CGG | 0.578187 | 3_4:-6560327 | None:intergenic |
| TGATGAGCTCAAAGATGATG+AGG | 0.579099 | 3_4:+6561731 | Msa0487550:CDS |
| AATACCTGATTTGTAGGCAG+GGG | 0.580602 | 3_4:-6560221 | None:intergenic |
| ATGTGGTGATCCCTCGCCCA+CGG | 0.581857 | 3_4:+6562021 | Msa0487550:CDS |
| CTGAATGGAAGAAAATTTGG+TGG | 0.582325 | 3_4:+6562678 | Msa0487550:CDS |
| CCAGAGAACAAATTTGCTCA+GGG | 0.582597 | 3_4:+6562726 | Msa0487550:CDS |
| TGCAGGTAATTTGGTTAATG+TGG | 0.583315 | 3_4:+6562004 | Msa0487550:intron |
| ACCTTGATCTAGATCGAGAC+CGG | 0.584536 | 3_4:-6558353 | None:intergenic |
| GAGTGAGAGAAGCAGGGACA+GGG | 0.585097 | 3_4:+6557880 | Msa0487550:CDS |
| TCTTCTTCATCAACAGGTGG+TGG | 0.585996 | 3_4:-6556519 | None:intergenic |
| GGGAGTATGATCGAGAGGAT+AGG | 0.586837 | 3_4:+6558316 | Msa0487550:CDS |
| GGCGATCTCTATGATGGTCA+CGG | 0.587032 | 3_4:-6558006 | None:intergenic |
| TTATTCAAGATTTATATGCA+GGG | 0.587387 | 3_4:+6562793 | Msa0487550:three_prime_UTR |
| ATCGTAGTGAGAGAAAGGAA+AGG | 0.592512 | 3_4:+6558035 | Msa0487550:CDS |
| CCTAGGGCAGCAGCTAGAGA+CGG | 0.592863 | 3_4:-6561156 | None:intergenic |
| ACCATCATAGAGATCGCCAC+AGG | 0.594034 | 3_4:+6558011 | Msa0487550:CDS |
| CTCGATCTGAGCATAGATCA+AGG | 0.594382 | 3_4:+6558382 | Msa0487550:CDS |
| AACTGCATCACCTGGACCAG+CGG | 0.595274 | 3_4:-6560896 | None:intergenic |
| TGAAGAAGCCAGCAATGCAA+TGG | 0.598626 | 3_4:+6560975 | Msa0487550:CDS |
| AAGGGATAAGGGAAGAGACA+GGG | 0.599153 | 3_4:+6557814 | Msa0487550:CDS |
| ACTTACAGCAAAAGGACTAG+TGG | 0.602947 | 3_4:+6559389 | Msa0487550:intron |
| ATTACCTGCTCATTAGCTGT+AGG | 0.603989 | 3_4:-6560524 | None:intergenic |
| GCTAGACGGGTGTATGTTGG+TGG | 0.606173 | 3_4:+6560494 | Msa0487550:CDS |
| ACCCAATATCGCAGAAGTAG+GGG | 0.606263 | 3_4:-6559426 | None:intergenic |
| CAGAGATAGGGAGAGAAGCA+GGG | 0.607054 | 3_4:+6557904 | Msa0487550:CDS |
| ACAGTTCACCATCAGGCCGT+GGG | 0.609862 | 3_4:-6562037 | None:intergenic |
| AGGCTACACGACATGCTAGA+CGG | 0.614733 | 3_4:+6560480 | Msa0487550:intron |
| ACAATTGGAGGAAACACCGC+TGG | 0.618666 | 3_4:+6560880 | Msa0487550:CDS |
| AGCAAACCTTTCCAACTCCA+GGG | 0.618687 | 3_4:-6562061 | None:intergenic |
| CCCAATATCGCAGAAGTAGG+GGG | 0.619164 | 3_4:-6559425 | None:intergenic |
| GAGAGGATAGGCATAGGAGT+AGG | 0.619167 | 3_4:+6558328 | Msa0487550:CDS |
| TCAGCTGGAATAGCACCTGA+TGG | 0.621294 | 3_4:+6562873 | Msa0487550:three_prime_UTR |
| CAGAGAGAGTGAGAGAAGCA+GGG | 0.625664 | 3_4:+6557874 | Msa0487550:CDS |
| ACTGTGCCCTGGAGTTGGAA+AGG | 0.629409 | 3_4:+6562055 | Msa0487550:CDS |
| CATGCTAGACGGGTGTATGT+TGG | 0.630630 | 3_4:+6560491 | Msa0487550:CDS |
| AAGAGACAGGGATAGAAGCA+GGG | 0.631073 | 3_4:+6557826 | Msa0487550:CDS |
| GCTCATTAGCTGTAGGAGAG+AGG | 0.632892 | 3_4:-6560517 | None:intergenic |
| TCGATCTAGATCAAGGTCAA+GGG | 0.634343 | 3_4:+6558359 | Msa0487550:CDS |
| TAGGGATAGGGAGAAAAGCA+GGG | 0.634757 | 3_4:+6557850 | Msa0487550:CDS |
| GCTGGAATAGCACCTGATGG+AGG | 0.636746 | 3_4:+6562876 | Msa0487550:three_prime_UTR |
| ACGAAGGGAGTATGATCGAG+AGG | 0.637703 | 3_4:+6558311 | Msa0487550:CDS |
| TAGCCTGAACTGGCAAGACA+GGG | 0.642494 | 3_4:-6560341 | None:intergenic |
| TAGTGAGAAAAGCAAAGACA+GGG | 0.650122 | 3_4:+6557940 | Msa0487550:CDS |
| AACGGACCTCATTTCCACAA+AGG | 0.654413 | 3_4:-6560953 | None:intergenic |
| GATGATTATCACAGAAGCCG+AGG | 0.655256 | 3_4:+6558076 | Msa0487550:CDS |
| CCAGAAGTAGAGAAAAGGAG+CGG | 0.658550 | 3_4:+6557765 | Msa0487550:CDS |
| AGATCTTCTTCATCAACAGG+TGG | 0.670030 | 3_4:-6556522 | None:intergenic |
| AGAGACGGATTATAATCAGT+AGG | 0.689160 | 3_4:-6561141 | None:intergenic |
| TTCTCTCACTACGATCCCTG+TGG | 0.694836 | 3_4:-6558027 | None:intergenic |
| CCATCATAGAGATCGCCACA+GGG | 0.695430 | 3_4:+6558012 | Msa0487550:CDS |
| ATAGGCATAGGAGTAGGCGC+CGG | 0.701001 | 3_4:+6558334 | Msa0487550:CDS |
| ACTTGCAGGTCAGATCTCTG+GGG | 0.748107 | 3_4:+6560160 | Msa0487550:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATTGAAATTCAATTATAA+CGG | + | chr3_4:6556632-6556651 | Msa0487550:intron | 10.0% |
| !!! | GATTAAAATTTTGAAATTTT+AGG | - | chr3_4:6556817-6556836 | None:intergenic | 10.0% |
| !!! | ATTTTAAGATTTTTCATTTT+AGG | + | chr3_4:6557138-6557157 | Msa0487550:intron | 10.0% |
| !! | GTTAGATAATAAATAAATAT+TGG | - | chr3_4:6558274-6558293 | None:intergenic | 10.0% |
| !!! | ATTTTGAAAAGAAAAAAAAA+TGG | + | chr3_4:6562458-6562477 | Msa0487550:intron | 10.0% |
| !!! | TTTTGAAAAGAAAAAAAAAT+GGG | + | chr3_4:6562459-6562478 | Msa0487550:intron | 10.0% |
| !!! | TGAATATTTTTTTTTGTTTT+TGG | + | chr3_4:6562547-6562566 | Msa0487550:intron | 10.0% |
| !!! | GAATATTTTTTTTTGTTTTT+GGG | + | chr3_4:6562548-6562567 | Msa0487550:intron | 10.0% |
| !! | TGATTGAAATTGAAAAATAA+AGG | - | chr3_4:6556589-6556608 | None:intergenic | 15.0% |
| !!! | TTTTTCAATTTCAATCAATT+AGG | + | chr3_4:6556592-6556611 | Msa0487550:intron | 15.0% |
| !!! | TTTTCAATTTCAATCAATTA+GGG | + | chr3_4:6556593-6556612 | Msa0487550:intron | 15.0% |
| !! | ATTCAATTGTATGATTATTT+AGG | + | chr3_4:6556703-6556722 | Msa0487550:intron | 15.0% |
| !! | TTCAATTGTATGATTATTTA+GGG | + | chr3_4:6556704-6556723 | Msa0487550:intron | 15.0% |
| !! | AATTGTATGATTGATTAATT+AGG | + | chr3_4:6556741-6556760 | Msa0487550:intron | 15.0% |
| !! | ATTGTATGATTGATTAATTA+GGG | + | chr3_4:6556742-6556761 | Msa0487550:intron | 15.0% |
| !!! | TATTAAAGTTTTGCAATTTT+AGG | + | chr3_4:6556925-6556944 | Msa0487550:intron | 15.0% |
| !! | TTCAAAATTTCTTATGTAAA+GGG | - | chr3_4:6557491-6557510 | None:intergenic | 15.0% |
| !! | ATTCAAAATTTCTTATGTAA+AGG | - | chr3_4:6557492-6557511 | None:intergenic | 15.0% |
| !! | AAGAAGAAAAAAAAAACAAT+AGG | - | chr3_4:6557580-6557599 | None:intergenic | 15.0% |
| !!! | TTAATGTTTTGTTTGTTTTT+TGG | + | chr3_4:6557702-6557721 | Msa0487550:intron | 15.0% |
| !! | TGAATAGAAATTATAACAAT+TGG | - | chr3_4:6558238-6558257 | None:intergenic | 15.0% |
| !!! | TCCATAAGATTTTTTTATTT+AGG | + | chr3_4:6558447-6558466 | Msa0487550:intron | 15.0% |
| !! | ACCTAAATAAAAAAATCTTA+TGG | - | chr3_4:6558451-6558470 | None:intergenic | 15.0% |
| !! | ATAAATATACATTCAACTAT+TGG | + | chr3_4:6558849-6558868 | Msa0487550:intron | 15.0% |
| !!! | TAATTTAACCTTTTAATGTA+AGG | + | chr3_4:6559126-6559145 | Msa0487550:intron | 15.0% |
| !!! | ATTTGAAATAATGAATATAC+AGG | - | chr3_4:6559196-6559215 | None:intergenic | 15.0% |
| !! | TTCATTATTTCAAATTTCAT+AGG | + | chr3_4:6559201-6559220 | Msa0487550:intron | 15.0% |
| !! | AAAATTCATATCAAATTACA+TGG | + | chr3_4:6559556-6559575 | Msa0487550:intron | 15.0% |
| !!! | TGTAATTTCATTTTTAATTC+AGG | + | chr3_4:6561095-6561114 | Msa0487550:intron | 15.0% |
| !!! | GTAATTTCATTTTTAATTCA+GGG | + | chr3_4:6561096-6561115 | Msa0487550:intron | 15.0% |
| !! | CGATTATATATAATAAATTG+TGG | + | chr3_4:6562576-6562595 | Msa0487550:intron | 15.0% |
| !! | GAAATTGAAAAATAAAGGAA+CGG | - | chr3_4:6556584-6556603 | None:intergenic | 20.0% |
| !! | TCAATTGTATGATTATTTAG+GGG | + | chr3_4:6556705-6556724 | Msa0487550:intron | 20.0% |
| !!! | TTTAGAATATTGATAACCTA+AGG | + | chr3_4:6556953-6556972 | Msa0487550:intron | 20.0% |
| !! | TCATATAACTTTACAATTTC+TGG | + | chr3_4:6556977-6556996 | Msa0487550:intron | 20.0% |
| !! | CCAAAATTTCTATTTGAAAA+GGG | - | chr3_4:6557213-6557232 | None:intergenic | 20.0% |
| !! | ACCAAAATTTCTATTTGAAA+AGG | - | chr3_4:6557214-6557233 | None:intergenic | 20.0% |
| !! | TATCACAATTGTTTCAATTT+CGG | + | chr3_4:6557240-6557259 | Msa0487550:intron | 20.0% |
| !!! | TTCATTAAAATCGAACTTTT+TGG | - | chr3_4:6557422-6557441 | None:intergenic | 20.0% |
| !!! | TTATTTTTGTTAGTGAATAG+AGG | + | chr3_4:6557447-6557466 | Msa0487550:intron | 20.0% |
| !!! | TATTTTTGTTAGTGAATAGA+GGG | + | chr3_4:6557448-6557467 | Msa0487550:intron | 20.0% |
| !!! | TGATGATGCATATAAAATTT+AGG | - | chr3_4:6557640-6557659 | None:intergenic | 20.0% |
| !! | TATTATCTAACATTGTTTGT+TGG | + | chr3_4:6558283-6558302 | Msa0487550:intron | 20.0% |
| !!! | AGAACTTGAAATTTTACAAA+TGG | - | chr3_4:6558507-6558526 | None:intergenic | 20.0% |
| !!! | CACTGTTCATTATAAAATTT+TGG | + | chr3_4:6559055-6559074 | Msa0487550:intron | 20.0% |
| !! | GTAATATTCCTTACATTAAA+AGG | - | chr3_4:6559137-6559156 | None:intergenic | 20.0% |
| !! | ATTATTTCAAATTTCATAGG+TGG | + | chr3_4:6559204-6559223 | Msa0487550:intron | 20.0% |
| !! | ATCCAACACAAATAAAAAAT+GGG | - | chr3_4:6559276-6559295 | None:intergenic | 20.0% |
| !! | AAAATTATAATATAGCAGTG+AGG | + | chr3_4:6560006-6560025 | Msa0487550:intron | 20.0% |
| !!! | CATTTTTGTTTGTCTTTTTA+AGG | + | chr3_4:6560299-6560318 | Msa0487550:intron | 20.0% |
| !! | TGAGTTTCAGTAAAATAATA+AGG | - | chr3_4:6561285-6561304 | None:intergenic | 20.0% |
| !! | AACACAAAAATTACCAAATT+TGG | - | chr3_4:6561796-6561815 | None:intergenic | 20.0% |
| !! | TAAAAGACTGAAAATTATGA+AGG | - | chr3_4:6561918-6561937 | None:intergenic | 20.0% |
| !! | TAGAGAATTTCCAAAATAAT+AGG | - | chr3_4:6562094-6562113 | None:intergenic | 20.0% |
| !! | AATGAGTTAAACACATAAAT+TGG | - | chr3_4:6562335-6562354 | None:intergenic | 20.0% |
| !! | TTTATTCAAGATTTATATGC+AGG | + | chr3_4:6562792-6562811 | Msa0487550:three_prime_UTR | 20.0% |
| !! | TTATTCAAGATTTATATGCA+GGG | + | chr3_4:6562793-6562812 | Msa0487550:three_prime_UTR | 20.0% |
| !! | TGTTCTAATACAATAATACT+TGG | + | chr3_4:6562902-6562921 | Msa0487550:three_prime_UTR | 20.0% |
| ! | TTTAATCAAATTTGACCCTT+TGG | + | chr3_4:6556830-6556849 | Msa0487550:intron | 25.0% |
| ! | TTAATCAAATTTGACCCTTT+GGG | + | chr3_4:6556831-6556850 | Msa0487550:intron | 25.0% |
| !!! | TGCATTAAGTTGGTATTATT+AGG | + | chr3_4:6556874-6556893 | Msa0487550:intron | 25.0% |
| !!! | GCATTAAGTTGGTATTATTA+GGG | + | chr3_4:6556875-6556894 | Msa0487550:intron | 25.0% |
| ! | TGTAAAGTTATATGAACCTT+AGG | - | chr3_4:6556972-6556991 | None:intergenic | 25.0% |
| !!! | ACTTTACAATTTCTGGTAAT+TGG | + | chr3_4:6556984-6557003 | Msa0487550:intron | 25.0% |
| !!! | CTTTACAATTTCTGGTAATT+GGG | + | chr3_4:6556985-6557004 | Msa0487550:intron | 25.0% |
| !! | CCCTTTTCAAATAGAAATTT+TGG | + | chr3_4:6557210-6557229 | Msa0487550:intron | 25.0% |
| !!! | AGAGAAAAAATGTCACTTTT+GGG | - | chr3_4:6557302-6557321 | None:intergenic | 25.0% |
| !!! | TAGAGAAAAAATGTCACTTT+TGG | - | chr3_4:6557303-6557322 | None:intergenic | 25.0% |
| ! | AGCAAAAAAATATCACTTGT+GGG | + | chr3_4:6557335-6557354 | Msa0487550:intron | 25.0% |
| !!! | AAAGTTCGATTTTAATGAAG+AGG | + | chr3_4:6557423-6557442 | Msa0487550:intron | 25.0% |
| !! | AGAAATTTTGAATTGCTAGA+TGG | + | chr3_4:6557499-6557518 | Msa0487550:intron | 25.0% |
| ! | TATCATCAAATTGGAAGATA+TGG | + | chr3_4:6557664-6557683 | Msa0487550:intron | 25.0% |
| ! | ATCATCAAATTGGAAGATAT+GGG | + | chr3_4:6557665-6557684 | Msa0487550:intron | 25.0% |
| !!! | GTAAAAGTTATTTTCTGGTT+TGG | + | chr3_4:6558108-6558127 | Msa0487550:intron | 25.0% |
| ! | AAAATCTTATGGATCTTTCT+GGG | - | chr3_4:6558440-6558459 | None:intergenic | 25.0% |
| ! | AAAAATCTTATGGATCTTTC+TGG | - | chr3_4:6558441-6558460 | None:intergenic | 25.0% |
| ! | TTCGTTCAACAAATAGTTAA+AGG | + | chr3_4:6558529-6558548 | Msa0487550:intron | 25.0% |
| ! | ACATGAGAACTGTAATAAAA+TGG | - | chr3_4:6558631-6558650 | None:intergenic | 25.0% |
| !! | ATATCCTTGATAATTTGATC+TGG | + | chr3_4:6558654-6558673 | Msa0487550:intron | 25.0% |
| !!! | TATAAAATTTTGGAACTCCA+TGG | + | chr3_4:6559065-6559084 | Msa0487550:intron | 25.0% |
| !! | GAAGTATCTCTTAAAACTAA+AGG | + | chr3_4:6559093-6559112 | Msa0487550:intron | 25.0% |
| ! | TTATCAGTTGTTCATACTTT+AGG | - | chr3_4:6559170-6559189 | None:intergenic | 25.0% |
| ! | TAAAGTATGAACAACTGATA+AGG | + | chr3_4:6559169-6559188 | Msa0487550:intron | 25.0% |
| ! | AAAGTATGAACAACTGATAA+GGG | + | chr3_4:6559170-6559189 | Msa0487550:intron | 25.0% |
| ! | CATCCAACACAAATAAAAAA+TGG | - | chr3_4:6559277-6559296 | None:intergenic | 25.0% |
| ! | AAAAAAGGGGGAAAAAAAAA+AGG | - | chr3_4:6559514-6559533 | None:intergenic | 25.0% |
| !! | TGATATGAATTTTCCATACT+AGG | - | chr3_4:6559549-6559568 | None:intergenic | 25.0% |
| ! | TTTACTTAGTGATACAATTC+TGG | + | chr3_4:6559674-6559693 | Msa0487550:intron | 25.0% |
| ! | ATAGAATTGCAAAAGATGAA+AGG | + | chr3_4:6560089-6560108 | Msa0487550:intron | 25.0% |
| !! | AAGAAAAATACCTGATTTGT+AGG | - | chr3_4:6560230-6560249 | None:intergenic | 25.0% |
| ! | TGTTTGGTACATCAAAAAAA+GGG | - | chr3_4:6560457-6560476 | None:intergenic | 25.0% |
| ! | ATGTTTGGTACATCAAAAAA+AGG | - | chr3_4:6560458-6560477 | None:intergenic | 25.0% |
| !! | CTTCAACATTTTATGAAACA+TGG | - | chr3_4:6560648-6560667 | None:intergenic | 25.0% |
| !!! | TTTGGATGGAATTATTTTTG+AGG | + | chr3_4:6560999-6561018 | Msa0487550:CDS | 25.0% |
| !!! | TATCTTTTGACTATAACTGA+TGG | + | chr3_4:6561022-6561041 | Msa0487550:intron | 25.0% |
| ! | ACTCATGCACAAAAAATTTA+AGG | - | chr3_4:6561608-6561627 | None:intergenic | 25.0% |
| ! | TTTATTTACACAATATCTGC+AGG | + | chr3_4:6561987-6562006 | Msa0487550:intron | 25.0% |
| !!! | GCTTTTTTGACCTATTATTT+TGG | + | chr3_4:6562081-6562100 | Msa0487550:intron | 25.0% |
| ! | CAAAATAAATAATGCAGCAT+TGG | - | chr3_4:6562444-6562463 | None:intergenic | 25.0% |
| ! | CTTATGGAAAATGATACTTA+TGG | + | chr3_4:6562496-6562515 | Msa0487550:intron | 25.0% |
| !!! | TTCTTTTTTGCAGGTATTTT+TGG | + | chr3_4:6562614-6562633 | Msa0487550:intron | 25.0% |
| !! | ATGCAGGGATTATTATATTT+TGG | + | chr3_4:6562808-6562827 | Msa0487550:three_prime_UTR | 25.0% |
| ! | GGATTTCTAATGAATTATTG+TGG | + | chr3_4:6562829-6562848 | Msa0487550:three_prime_UTR | 25.0% |
| !!! | ACATAAATGTTTTATTCAGC+TGG | + | chr3_4:6562858-6562877 | Msa0487550:three_prime_UTR | 25.0% |
| ! | TATGATCTTCTTCTTGTTGT+TGG | - | chr3_4:6556464-6556483 | None:intergenic | 30.0% |
| ! | AAATACGTTGGATTTGGAAT+CGG | - | chr3_4:6556550-6556569 | None:intergenic | 30.0% |
| TAGGAAAAATACGTTGGATT+TGG | - | chr3_4:6556556-6556575 | None:intergenic | 30.0% | |
| GTGAATTAGGAAAAATACGT+TGG | - | chr3_4:6556562-6556581 | None:intergenic | 30.0% | |
| AAATAAAGGAACGGTGAATT+AGG | - | chr3_4:6556575-6556594 | None:intergenic | 30.0% | |
| GGGTAAATACTTGAATTGAT+CGG | + | chr3_4:6556762-6556781 | Msa0487550:intron | 30.0% | |
| TAATCAAATTTGACCCTTTG+GGG | + | chr3_4:6556832-6556851 | Msa0487550:intron | 30.0% | |
| TTGAGAAAAAAACGATGAAG+AGG | - | chr3_4:6557056-6557075 | None:intergenic | 30.0% | |
| !!! | GAGAAAAAATGTCACTTTTG+GGG | - | chr3_4:6557301-6557320 | None:intergenic | 30.0% |
| GAGCAAAAAAATATCACTTG+TGG | + | chr3_4:6557334-6557353 | Msa0487550:intron | 30.0% | |
| GCAAAAAAATATCACTTGTG+GGG | + | chr3_4:6557336-6557355 | Msa0487550:intron | 30.0% | |
| CATCACTGTTATCATCAAAT+TGG | + | chr3_4:6557655-6557674 | Msa0487550:intron | 30.0% | |
| !! | GACAGGTAAAAGTTATTTTC+TGG | + | chr3_4:6558103-6558122 | Msa0487550:intron | 30.0% |
| TCATCTATTGATCTTATGTG+AGG | + | chr3_4:6558166-6558185 | Msa0487550:intron | 30.0% | |
| TAACATATAATGCATGTGCT+GGG | + | chr3_4:6558477-6558496 | Msa0487550:intron | 30.0% | |
| TTGACCAGATCAAATTATCA+AGG | - | chr3_4:6558661-6558680 | None:intergenic | 30.0% | |
| ! | CAACGTAACTAATTTAGAGT+GGG | - | chr3_4:6558795-6558814 | None:intergenic | 30.0% |
| TCAACGTAACTAATTTAGAG+TGG | - | chr3_4:6558796-6558815 | None:intergenic | 30.0% | |
| ATTTCAAATTTCATAGGTGG+TGG | + | chr3_4:6559207-6559226 | Msa0487550:intron | 30.0% | |
| CAACACAAATAAAAAATGGG+TGG | - | chr3_4:6559273-6559292 | None:intergenic | 30.0% | |
| !!! | CACCCATTTTTTATTTGTGT+TGG | + | chr3_4:6559271-6559290 | Msa0487550:intron | 30.0% |
| TATTTGTGTTGGATGCTATT+AGG | + | chr3_4:6559282-6559301 | Msa0487550:intron | 30.0% | |
| TTTGATCTACTTACAGCAAA+AGG | + | chr3_4:6559381-6559400 | Msa0487550:intron | 30.0% | |
| !!! | TTTTTTTCCCCCTTTTTTGT+TGG | + | chr3_4:6559516-6559535 | Msa0487550:intron | 30.0% |
| AGATAAGTTTCAGTTACTAC+TGG | + | chr3_4:6559599-6559618 | Msa0487550:intron | 30.0% | |
| GATAAGTTTCAGTTACTACT+GGG | + | chr3_4:6559600-6559619 | Msa0487550:intron | 30.0% | |
| AAGACAAAATTACACACCAA+GGG | - | chr3_4:6559650-6559669 | None:intergenic | 30.0% | |
| AAAGACAAAATTACACACCA+AGG | - | chr3_4:6559651-6559670 | None:intergenic | 30.0% | |
| !! | GATACAATTCTGGAACTAAA+TGG | + | chr3_4:6559684-6559703 | Msa0487550:intron | 30.0% |
| !!! | TTGGTTTTTTGTCTTGTGTT+TGG | + | chr3_4:6559711-6559730 | Msa0487550:intron | 30.0% |
| ATTGCAAAAGATGAAAGGTA+TGG | + | chr3_4:6560094-6560113 | Msa0487550:intron | 30.0% | |
| ! | TTGCAAAAGATGAAAGGTAT+GGG | + | chr3_4:6560095-6560114 | Msa0487550:intron | 30.0% |
| AACATATTTGGAAACATTCC+AGG | - | chr3_4:6560200-6560219 | None:intergenic | 30.0% | |
| ! | TTTCTTTTTGTTCCCAATTC+TGG | + | chr3_4:6560244-6560263 | Msa0487550:intron | 30.0% |
| TAGGGAAATCAATGCTAAAA+GGG | - | chr3_4:6560427-6560446 | None:intergenic | 30.0% | |
| TTAGGGAAATCAATGCTAAA+AGG | - | chr3_4:6560428-6560447 | None:intergenic | 30.0% | |
| CAAAAAAAGGGACAAAGTTA+GGG | - | chr3_4:6560445-6560464 | None:intergenic | 30.0% | |
| TCAAAAAAAGGGACAAAGTT+AGG | - | chr3_4:6560446-6560465 | None:intergenic | 30.0% | |
| ! | TTTTGATGTACCAAACATGT+AGG | + | chr3_4:6560460-6560479 | Msa0487550:intron | 30.0% |
| TCAAAATGATCTTTCCATGT+TGG | + | chr3_4:6560557-6560576 | Msa0487550:intron | 30.0% | |
| GACAAATAGGCAATTTAGAA+GGG | - | chr3_4:6560616-6560635 | None:intergenic | 30.0% | |
| TGACAAATAGGCAATTTAGA+AGG | - | chr3_4:6560617-6560636 | None:intergenic | 30.0% | |
| ATGGAAACTACATGACAAAT+AGG | - | chr3_4:6560629-6560648 | None:intergenic | 30.0% | |
| ! | GATTCTTGTGATTTGAGTTT+AGG | + | chr3_4:6560712-6560731 | Msa0487550:intron | 30.0% |
| ! | TTTGAGTTTAGGAAGCAATT+AGG | + | chr3_4:6560723-6560742 | Msa0487550:intron | 30.0% |
| !!! | AGTTTTGTTTGTGCTACTTT+TGG | + | chr3_4:6560788-6560807 | Msa0487550:intron | 30.0% |
| TAGTGAAAGATAGAGAAACA+GGG | + | chr3_4:6561352-6561371 | Msa0487550:intron | 30.0% | |
| AGCTCTCAATGGAATAAAAA+TGG | + | chr3_4:6561437-6561456 | Msa0487550:intron | 30.0% | |
| GCTCTCAATGGAATAAAAAT+GGG | + | chr3_4:6561438-6561457 | Msa0487550:intron | 30.0% | |
| ATTAAAATGCTCTCTTGTTC+AGG | - | chr3_4:6561522-6561541 | None:intergenic | 30.0% | |
| !! | GTATGGTGGGATTATTATTT+TGG | + | chr3_4:6561570-6561589 | Msa0487550:intron | 30.0% |
| GGAGAATGTAAGATTACAAA+AGG | - | chr3_4:6561861-6561880 | None:intergenic | 30.0% | |
| GATGTGACAACACAAATAAT+TGG | + | chr3_4:6562359-6562378 | Msa0487550:intron | 30.0% | |
| AGGAGTTTAATTCATATGCA+CGG | - | chr3_4:6562412-6562431 | None:intergenic | 30.0% | |
| GGAATGTCAGAAATTACTTA+TGG | + | chr3_4:6562480-6562499 | Msa0487550:intron | 30.0% | |
| ATACCTGCAAAAAAGAAAAC+AGG | - | chr3_4:6562611-6562630 | None:intergenic | 30.0% | |
| CTAATTGTGTTCTTGTTACT+TGG | + | chr3_4:6562761-6562780 | Msa0487550:exon | 30.0% | |
| AAAGAGAGAGACAGAGAAAA+TGG | + | chr3_4:6556404-6556423 | Msa0487550:exon | 35.0% | |
| AAGAGAGAGACAGAGAAAAT+GGG | + | chr3_4:6556405-6556424 | Msa0487550:exon | 35.0% | |
| ACGGCAAATTAGATATGTGT+TGG | + | chr3_4:6556651-6556670 | Msa0487550:intron | 35.0% | |
| GCACCAAATGTGATATTTGA+AGG | + | chr3_4:6557395-6557414 | Msa0487550:intron | 35.0% | |
| GGTCCTTCAAATATCACATT+TGG | - | chr3_4:6557401-6557420 | None:intergenic | 35.0% | |
| TTTGAATTGCTAGATGGTTG+TGG | + | chr3_4:6557505-6557524 | Msa0487550:intron | 35.0% | |
| ! | CTTTTACGTGCAATGTGATA+TGG | + | chr3_4:6557534-6557553 | Msa0487550:intron | 35.0% |
| !!! | TTGTTTGTTTTTTGGCAGCA+TGG | + | chr3_4:6557710-6557729 | Msa0487550:intron | 35.0% |
| GAGAGAAAAGGAGAGAAAAA+GGG | + | chr3_4:6557796-6557815 | Msa0487550:CDS | 35.0% | |
| AAAGGAGAGAAAAAGGGATA+AGG | + | chr3_4:6557802-6557821 | Msa0487550:CDS | 35.0% | |
| AAGGAGAGAAAAAGGGATAA+GGG | + | chr3_4:6557803-6557822 | Msa0487550:CDS | 35.0% | |
| ATAGTGAGAAAAGCAAAGAC+AGG | + | chr3_4:6557939-6557958 | Msa0487550:CDS | 35.0% | |
| TAGTGAGAAAAGCAAAGACA+GGG | + | chr3_4:6557940-6557959 | Msa0487550:CDS | 35.0% | |
| ! | TTGTTTGTTGGTATAGACGA+AGG | + | chr3_4:6558295-6558314 | Msa0487550:intron | 35.0% |
| ! | TGTTTGTTGGTATAGACGAA+GGG | + | chr3_4:6558296-6558315 | Msa0487550:intron | 35.0% |
| CTAACATATAATGCATGTGC+TGG | + | chr3_4:6558476-6558495 | Msa0487550:intron | 35.0% | |
| TAATGTTGTGTGAATGCATG+TGG | + | chr3_4:6558573-6558592 | Msa0487550:intron | 35.0% | |
| TTGAGTCTTAACAGTGCTAT+TGG | + | chr3_4:6558904-6558923 | Msa0487550:intron | 35.0% | |
| ACACATACCAAGTTCTCAAA+AGG | - | chr3_4:6558930-6558949 | None:intergenic | 35.0% | |
| GTTCGAAGAACATTTACTGT+CGG | - | chr3_4:6558968-6558987 | None:intergenic | 35.0% | |
| CAAACATACTCAACACACAT+TGG | - | chr3_4:6559016-6559035 | None:intergenic | 35.0% | |
| CAATGTGTGTTGAGTATGTT+TGG | + | chr3_4:6559014-6559033 | Msa0487550:intron | 35.0% | |
| !!! | AAGGACTAGTGGTTTTGATA+TGG | + | chr3_4:6559400-6559419 | Msa0487550:CDS | 35.0% |
| ATCAACACCAACAAAAAAGG+GGG | - | chr3_4:6559526-6559545 | None:intergenic | 35.0% | |
| GATCAACACCAACAAAAAAG+GGG | - | chr3_4:6559527-6559546 | None:intergenic | 35.0% | |
| GGATCAACACCAACAAAAAA+GGG | - | chr3_4:6559528-6559547 | None:intergenic | 35.0% | |
| AGGATCAACACCAACAAAAA+AGG | - | chr3_4:6559529-6559548 | None:intergenic | 35.0% | |
| CATGGTCTTTACTGTTTACT+TGG | + | chr3_4:6559574-6559593 | Msa0487550:intron | 35.0% | |
| GGTATATAGCTCTTGAATAC+TGG | + | chr3_4:6559621-6559640 | Msa0487550:intron | 35.0% | |
| !! | TCTTGTCTTATGCTCTAAGA+AGG | + | chr3_4:6559756-6559775 | Msa0487550:intron | 35.0% |
| GACATAAAAGCTACAGATGT+CGG | - | chr3_4:6559826-6559845 | None:intergenic | 35.0% | |
| ! | ATCTGTAGCTTTTATGTCCA+AGG | + | chr3_4:6559828-6559847 | Msa0487550:intron | 35.0% |
| CTGGAAACTATTACCTACTT+CGG | + | chr3_4:6559895-6559914 | Msa0487550:intron | 35.0% | |
| ! | AAATACCTGATTTGTAGGCA+GGG | - | chr3_4:6560225-6560244 | None:intergenic | 35.0% |
| ! | AAAATACCTGATTTGTAGGC+AGG | - | chr3_4:6560226-6560245 | None:intergenic | 35.0% |
| TATGACACAACAGGTAAAAG+AGG | + | chr3_4:6560362-6560381 | Msa0487550:intron | 35.0% | |
| GAAATCAATGCTAAAAGGGA+AGG | - | chr3_4:6560423-6560442 | None:intergenic | 35.0% | |
| TTCTCATTCATGAACCAACA+TGG | - | chr3_4:6560574-6560593 | None:intergenic | 35.0% | |
| !! | TGTTGGTTCATGAATGAGAA+TGG | + | chr3_4:6560574-6560593 | Msa0487550:intron | 35.0% |
| !!! | AGCTTTTTAGAGTATGTTGC+TGG | + | chr3_4:6560666-6560685 | Msa0487550:intron | 35.0% |
| TAGTTAAGTGAAGAACACGT+TGG | + | chr3_4:6560749-6560768 | Msa0487550:intron | 35.0% | |
| AACTTTCTTCAGTCAGGTTA+TGG | + | chr3_4:6560855-6560874 | Msa0487550:CDS | 35.0% | |
| !! | AGAGACGGATTATAATCAGT+AGG | - | chr3_4:6561144-6561163 | None:intergenic | 35.0% |
| !! | AGAGAGCTTTTAGAGACTTT+TGG | + | chr3_4:6561309-6561328 | Msa0487550:intron | 35.0% |
| CTAGTGAAAGATAGAGAAAC+AGG | + | chr3_4:6561351-6561370 | Msa0487550:intron | 35.0% | |
| TAGAGAAACAGGGAATTCAA+AGG | + | chr3_4:6561362-6561381 | Msa0487550:intron | 35.0% | |
| AGAGAAACAGGGAATTCAAA+GGG | + | chr3_4:6561363-6561382 | Msa0487550:intron | 35.0% | |
| ACTTATGTTACAACCAGCAT+TGG | + | chr3_4:6561668-6561687 | Msa0487550:CDS | 35.0% | |
| AACTTAGGCCTGATTCTTTA+GGG | - | chr3_4:6561883-6561902 | None:intergenic | 35.0% | |
| AAACTTAGGCCTGATTCTTT+AGG | - | chr3_4:6561884-6561903 | None:intergenic | 35.0% | |
| CACAATATCTGCAGGTAATT+TGG | + | chr3_4:6561995-6562014 | Msa0487550:intron | 35.0% | |
| TGCAGGTAATTTGGTTAATG+TGG | + | chr3_4:6562004-6562023 | Msa0487550:intron | 35.0% | |
| ! | ATTCTCTACTCTTTTGTCTC+TGG | + | chr3_4:6562106-6562125 | Msa0487550:intron | 35.0% |
| GTTTGTCCTTCAGGAAATAA+TGG | + | chr3_4:6562164-6562183 | Msa0487550:intron | 35.0% | |
| ATAAATTGGCATACTCGCTT+CGG | - | chr3_4:6562321-6562340 | None:intergenic | 35.0% | |
| !! | AATAATGCAGCATTGGCAAT+AGG | - | chr3_4:6562437-6562456 | None:intergenic | 35.0% |
| !! | GAACCTGTTTTCTTTTTTGC+AGG | + | chr3_4:6562605-6562624 | Msa0487550:intron | 35.0% |
| GGACTGAATGGAAGAAAATT+TGG | + | chr3_4:6562675-6562694 | Msa0487550:CDS | 35.0% | |
| CTGAATGGAAGAAAATTTGG+TGG | + | chr3_4:6562678-6562697 | Msa0487550:CDS | 35.0% | |
| ATTAGAACAAATCCTCCATC+AGG | - | chr3_4:6562891-6562910 | None:intergenic | 35.0% | |
| AGATCTTCTTCATCAACAGG+TGG | - | chr3_4:6556525-6556544 | None:intergenic | 40.0% | |
| GTGAGATCTTCTTCATCAAC+AGG | - | chr3_4:6556528-6556547 | None:intergenic | 40.0% | |
| GAATTGATCGGTGAAATCGT+AGG | + | chr3_4:6556774-6556793 | Msa0487550:intron | 40.0% | |
| GTCCAAACAAAAACCCCAAA+GGG | - | chr3_4:6556848-6556867 | None:intergenic | 40.0% | |
| GGACGAGAATTGCATTAAGT+TGG | + | chr3_4:6556864-6556883 | Msa0487550:intron | 40.0% | |
| ! | CTGGTAATTGGGTACTGTAT+TGG | + | chr3_4:6556996-6557015 | Msa0487550:intron | 40.0% |
| AACGATGAAGAGGATTCATC+AGG | - | chr3_4:6557046-6557065 | None:intergenic | 40.0% | |
| ! | TTCACATTTGAGACAACGCT+GGG | - | chr3_4:6557272-6557291 | None:intergenic | 40.0% |
| ! | ATTCACATTTGAGACAACGC+TGG | - | chr3_4:6557273-6557292 | None:intergenic | 40.0% |
| ATCCTCCAGAAGTAGAGAAA+AGG | + | chr3_4:6557760-6557779 | Msa0487550:CDS | 40.0% | |
| GGAGAGAAAAGGAGAGAAAA+AGG | + | chr3_4:6557795-6557814 | Msa0487550:CDS | 40.0% | |
| ATCGTAGTGAGAGAAAGGAA+AGG | + | chr3_4:6558035-6558054 | Msa0487550:CDS | 40.0% | |
| TCGTAGTGAGAGAAAGGAAA+GGG | + | chr3_4:6558036-6558055 | Msa0487550:CDS | 40.0% | |
| TGAGAGAAAGGAAAGGGTAA+GGG | + | chr3_4:6558042-6558061 | Msa0487550:CDS | 40.0% | |
| ! | ACTTTTACCTGTCATAGCCT+CGG | - | chr3_4:6558096-6558115 | None:intergenic | 40.0% |
| TCGATCTAGATCAAGGTCAA+GGG | + | chr3_4:6558359-6558378 | Msa0487550:CDS | 40.0% | |
| !!! | TCTTTCTGGGACTTACCTTT+TGG | - | chr3_4:6558427-6558446 | None:intergenic | 40.0% |
| ATAGTTAAAGGATATGCGCG+AGG | + | chr3_4:6558541-6558560 | Msa0487550:intron | 40.0% | |
| TAGTTAAAGGATATGCGCGA+GGG | + | chr3_4:6558542-6558561 | Msa0487550:intron | 40.0% | |
| TTGTGTGAATGCATGTGGAA+GGG | + | chr3_4:6558578-6558597 | Msa0487550:intron | 40.0% | |
| !!! | CTATTGGCCTTTTGAGAACT+TGG | + | chr3_4:6558920-6558939 | Msa0487550:intron | 40.0% |
| !!! | ATTTTGGAACTCCATGGACT+TGG | + | chr3_4:6559071-6559090 | Msa0487550:intron | 40.0% |
| AAGAGATACTTCCAAGTCCA+TGG | - | chr3_4:6559085-6559104 | None:intergenic | 40.0% | |
| !! | CAAATTTCATAGGTGGTGGA+AGG | + | chr3_4:6559211-6559230 | Msa0487550:intron | 40.0% |
| ACTTACAGCAAAAGGACTAG+TGG | + | chr3_4:6559389-6559408 | Msa0487550:intron | 40.0% | |
| !! | TGTTGGTGTTGATCCTAGTA+TGG | + | chr3_4:6559533-6559552 | Msa0487550:intron | 40.0% |
| !! | TCTTGAATACTGGTTTCCCT+TGG | + | chr3_4:6559631-6559650 | Msa0487550:intron | 40.0% |
| ! | TCTGGAACTAAATGGTGCTT+TGG | + | chr3_4:6559692-6559711 | Msa0487550:intron | 40.0% |
| !! | ATGCTCTAAGAAGGCAATGT+TGG | + | chr3_4:6559765-6559784 | Msa0487550:intron | 40.0% |
| !! | TGCTCTAAGAAGGCAATGTT+GGG | + | chr3_4:6559766-6559785 | Msa0487550:intron | 40.0% |
| ! | TGTAGCTTTTATGTCCAAGG+AGG | + | chr3_4:6559831-6559850 | Msa0487550:intron | 40.0% |
| ! | GGAATCAATGCACCTGTTTT+TGG | + | chr3_4:6559852-6559871 | Msa0487550:intron | 40.0% |
| !!! | ATCAATGCACCTGTTTTTGG+TGG | + | chr3_4:6559855-6559874 | Msa0487550:intron | 40.0% |
| !!! | TCAATGCACCTGTTTTTGGT+GGG | + | chr3_4:6559856-6559875 | Msa0487550:intron | 40.0% |
| ATTCGTAAGTCTACCGAAGT+AGG | - | chr3_4:6559911-6559930 | None:intergenic | 40.0% | |
| ! | AATACCTGATTTGTAGGCAG+GGG | - | chr3_4:6560224-6560243 | None:intergenic | 40.0% |
| ATTACCTGCTCATTAGCTGT+AGG | - | chr3_4:6560527-6560546 | None:intergenic | 40.0% | |
| AGTTGCAACTTTCTTCAGTC+AGG | + | chr3_4:6560849-6560868 | Msa0487550:CDS | 40.0% | |
| AGTCAGGTTATGGCTACAAT+TGG | + | chr3_4:6560865-6560884 | Msa0487550:CDS | 40.0% | |
| CAAAGGCAAACTTCTTGTCA+TGG | - | chr3_4:6560939-6560958 | None:intergenic | 40.0% | |
| TGACAAGAAGTTTGCCTTTG+TGG | + | chr3_4:6560939-6560958 | Msa0487550:CDS | 40.0% | |
| AGTTTGCCTTTGTGGAAATG+AGG | + | chr3_4:6560947-6560966 | Msa0487550:CDS | 40.0% | |
| ! | GATTAAGGTTTGGGTTAGGT+TGG | - | chr3_4:6561188-6561207 | None:intergenic | 40.0% |
| ACCTAACCCAAACCTTAATC+TGG | + | chr3_4:6561188-6561207 | Msa0487550:CDS | 40.0% | |
| CCTAACCCAAACCTTAATCT+GGG | + | chr3_4:6561189-6561208 | Msa0487550:CDS | 40.0% | |
| CTAAGCCCAGATTAAGGTTT+GGG | - | chr3_4:6561197-6561216 | None:intergenic | 40.0% | |
| ACTAAGCCCAGATTAAGGTT+TGG | - | chr3_4:6561198-6561217 | None:intergenic | 40.0% | |
| AACCTTAATCTGGGCTTAGT+TGG | + | chr3_4:6561198-6561217 | Msa0487550:CDS | 40.0% | |
| ! | TAGAGACTTTTGGTCCTCTT+CGG | + | chr3_4:6561319-6561338 | Msa0487550:intron | 40.0% |
| ! | ATGCTCTCTTGTTCAGGTTT+AGG | - | chr3_4:6561516-6561535 | None:intergenic | 40.0% |
| ! | TATGTTACAACCAGCATTGG+TGG | + | chr3_4:6561671-6561690 | Msa0487550:CDS | 40.0% |
| TCATCATCTTTGAGCTCATC+AGG | - | chr3_4:6561732-6561751 | None:intergenic | 40.0% | |
| TGATGAGCTCAAAGATGATG+AGG | + | chr3_4:6561731-6561750 | Msa0487550:CDS | 40.0% | |
| ! | GATTCTTGATGATATGCGAC+AGG | + | chr3_4:6561764-6561783 | Msa0487550:CDS | 40.0% |
| ACATTCTCCCCTAAAGAATC+AGG | + | chr3_4:6561872-6561891 | Msa0487550:intron | 40.0% | |
| ACTTAGGCCTGATTCTTTAG+GGG | - | chr3_4:6561882-6561901 | None:intergenic | 40.0% | |
| !! | AGGCTTTGAGTCTGAAACTT+AGG | - | chr3_4:6561898-6561917 | None:intergenic | 40.0% |
| TTTGTCTGTGTTTGTCCTTC+AGG | + | chr3_4:6562155-6562174 | Msa0487550:intron | 40.0% | |
| ATCACGCCATTATTTCCTGA+AGG | - | chr3_4:6562173-6562192 | None:intergenic | 40.0% | |
| TTGGAGTATGCTGATGTTGA+TGG | + | chr3_4:6562633-6562652 | Msa0487550:CDS | 40.0% | |
| TTCTTCCATTCAGTCCAGAA+CGG | - | chr3_4:6562671-6562690 | None:intergenic | 40.0% | |
| ! | TCCAGAGAACAAATTTGCTC+AGG | + | chr3_4:6562725-6562744 | Msa0487550:CDS | 40.0% |
| ! | CCAGAGAACAAATTTGCTCA+GGG | + | chr3_4:6562726-6562745 | Msa0487550:CDS | 40.0% |
| TCTTCTTCATCAACAGGTGG+TGG | - | chr3_4:6556522-6556541 | None:intergenic | 45.0% | |
| !!! | GACCCTTTGGGGTTTTTGTT+TGG | + | chr3_4:6556843-6556862 | Msa0487550:intron | 45.0% |
| CGTCCAAACAAAAACCCCAA+AGG | - | chr3_4:6556849-6556868 | None:intergenic | 45.0% | |
| GCCAAAATTCACCACCATCT+GGG | + | chr3_4:6557358-6557377 | Msa0487550:intron | 45.0% | |
| !! | ACCCAGATGGTGGTGAATTT+TGG | - | chr3_4:6557362-6557381 | None:intergenic | 45.0% |
| AAATTCACCACCATCTGGGT+TGG | + | chr3_4:6557362-6557381 | Msa0487550:intron | 45.0% | |
| AATTCACCACCATCTGGGTT+GGG | + | chr3_4:6557363-6557382 | Msa0487550:intron | 45.0% | |
| AACTTTGATCCCAACCCAGA+TGG | - | chr3_4:6557375-6557394 | None:intergenic | 45.0% | |
| ! | CTCCTTTTCTCTACTTCTGG+AGG | - | chr3_4:6557765-6557784 | None:intergenic | 45.0% |
| CCAGAAGTAGAGAAAAGGAG+CGG | + | chr3_4:6557765-6557784 | Msa0487550:CDS | 45.0% | |
| CAGAAGTAGAGAAAAGGAGC+GGG | + | chr3_4:6557766-6557785 | Msa0487550:CDS | 45.0% | |
| AAAGGGATAAGGGAAGAGAC+AGG | + | chr3_4:6557813-6557832 | Msa0487550:CDS | 45.0% | |
| AAGGGATAAGGGAAGAGACA+GGG | + | chr3_4:6557814-6557833 | Msa0487550:CDS | 45.0% | |
| AAGAGACAGGGATAGAAGCA+GGG | + | chr3_4:6557826-6557845 | Msa0487550:CDS | 45.0% | |
| ATAGAAGCAGGGATAGGGAT+AGG | + | chr3_4:6557837-6557856 | Msa0487550:CDS | 45.0% | |
| TAGAAGCAGGGATAGGGATA+GGG | + | chr3_4:6557838-6557857 | Msa0487550:CDS | 45.0% | |
| ATAGGGATAGGGAGAAAAGC+AGG | + | chr3_4:6557849-6557868 | Msa0487550:CDS | 45.0% | |
| TAGGGATAGGGAGAAAAGCA+GGG | + | chr3_4:6557850-6557869 | Msa0487550:CDS | 45.0% | |
| GTGAGAGAAAGGAAAGGGTA+AGG | + | chr3_4:6558041-6558060 | Msa0487550:CDS | 45.0% | |
| GATGATTATCACAGAAGCCG+AGG | + | chr3_4:6558076-6558095 | Msa0487550:CDS | 45.0% | |
| ATGATCGAGAGGATAGGCAT+AGG | + | chr3_4:6558322-6558341 | Msa0487550:CDS | 45.0% | |
| ACCTTGATCTAGATCGAGAC+CGG | - | chr3_4:6558356-6558375 | None:intergenic | 45.0% | |
| CTCGATCTAGATCAAGGTCA+AGG | + | chr3_4:6558358-6558377 | Msa0487550:CDS | 45.0% | |
| CTCGATCTGAGCATAGATCA+AGG | + | chr3_4:6558382-6558401 | Msa0487550:CDS | 45.0% | |
| AGTTAAAGGATATGCGCGAG+GGG | + | chr3_4:6558543-6558562 | Msa0487550:intron | 45.0% | |
| GTTGTGTGAATGCATGTGGA+AGG | + | chr3_4:6558577-6558596 | Msa0487550:intron | 45.0% | |
| GTTACAATCACTGAGCAGCA+AGG | - | chr3_4:6559240-6559259 | None:intergenic | 45.0% | |
| !!! | GAACGTTGCTTTTCATGCAG+AGG | - | chr3_4:6559345-6559364 | None:intergenic | 45.0% |
| ACCCAATATCGCAGAAGTAG+GGG | - | chr3_4:6559429-6559448 | None:intergenic | 45.0% | |
| CACCCAATATCGCAGAAGTA+GGG | - | chr3_4:6559430-6559449 | None:intergenic | 45.0% | |
| GAACAAGACCCACCAAAAAC+AGG | - | chr3_4:6559867-6559886 | None:intergenic | 45.0% | |
| !! | GGGTCTTGTTCATCTTCAAC+TGG | + | chr3_4:6559876-6559895 | Msa0487550:intron | 45.0% |
| ! | CAACTGACTTCTGCTACAAC+TGG | - | chr3_4:6560054-6560073 | None:intergenic | 45.0% |
| ! | ATATGCCTTGCTGTACTTGC+AGG | + | chr3_4:6560146-6560165 | Msa0487550:intron | 45.0% |
| TACTTGCAGGTCAGATCTCT+GGG | + | chr3_4:6560159-6560178 | Msa0487550:intron | 45.0% | |
| GGAAACATTCCAGGAATAGC+AGG | - | chr3_4:6560191-6560210 | None:intergenic | 45.0% | |
| GTAGGCAGGGGAAACATATT+TGG | - | chr3_4:6560212-6560231 | None:intergenic | 45.0% | |
| TGTCCAGCAGAACCAGAATT+GGG | - | chr3_4:6560259-6560278 | None:intergenic | 45.0% | |
| TTGTCCAGCAGAACCAGAAT+TGG | - | chr3_4:6560260-6560279 | None:intergenic | 45.0% | |
| !! | AAGACAGGGAGAGCACTAAA+CGG | - | chr3_4:6560330-6560349 | None:intergenic | 45.0% |
| TGTTGTGTCATAGCCTGAAC+TGG | - | chr3_4:6560354-6560373 | None:intergenic | 45.0% | |
| AGTTCAGGCTATGACACAAC+AGG | + | chr3_4:6560353-6560372 | Msa0487550:CDS | 45.0% | |
| TGTCGTGTAGCCTACATGTT+TGG | - | chr3_4:6560473-6560492 | None:intergenic | 45.0% | |
| CAGGTTATGGCTACAATTGG+AGG | + | chr3_4:6560868-6560887 | Msa0487550:CDS | 45.0% | |
| ACATTCACAACTGCATCACC+TGG | - | chr3_4:6560907-6560926 | None:intergenic | 45.0% | |
| AACGGACCTCATTTCCACAA+AGG | - | chr3_4:6560956-6560975 | None:intergenic | 45.0% | |
| !! | TGCATTGCTGGCTTCTTCAA+CGG | - | chr3_4:6560974-6560993 | None:intergenic | 45.0% |
| TGAAGAAGCCAGCAATGCAA+TGG | + | chr3_4:6560975-6560994 | Msa0487550:CDS | 45.0% | |
| ATCCAAAGCCATTGCATTGC+TGG | - | chr3_4:6560986-6561005 | None:intergenic | 45.0% | |
| !! | AGCAATGCAATGGCTTTGGA+TGG | + | chr3_4:6560985-6561004 | Msa0487550:CDS | 45.0% |
| ! | CCCAGATTAAGGTTTGGGTT+AGG | - | chr3_4:6561192-6561211 | None:intergenic | 45.0% |
| GTCCAACTAAGCCCAGATTA+AGG | - | chr3_4:6561203-6561222 | None:intergenic | 45.0% | |
| ! | GGTCCTGATCGGATTTTTGT+TGG | + | chr3_4:6561252-6561271 | Msa0487550:CDS | 45.0% |
| CCACCAACAAAAATCCGATC+AGG | - | chr3_4:6561258-6561277 | None:intergenic | 45.0% | |
| ! | CCTGATCGGATTTTTGTTGG+TGG | + | chr3_4:6561255-6561274 | Msa0487550:intron | 45.0% |
| ! | AGAGACTTTTGGTCCTCTTC+GGG | + | chr3_4:6561320-6561339 | Msa0487550:intron | 45.0% |
| ACTAGATCAAAACCCCGAAG+AGG | - | chr3_4:6561336-6561355 | None:intergenic | 45.0% | |
| TATTCCATTGAGAGCTGCAC+AGG | - | chr3_4:6561433-6561452 | None:intergenic | 45.0% | |
| ! | GTTCAGGTTTAGGCTGCATT+GGG | - | chr3_4:6561506-6561525 | None:intergenic | 45.0% |
| ! | TGTTCAGGTTTAGGCTGCAT+TGG | - | chr3_4:6561507-6561526 | None:intergenic | 45.0% |
| CGACAGGAATGCTCCAAATT+TGG | + | chr3_4:6561780-6561799 | Msa0487550:CDS | 45.0% | |
| AGCAAACCTTTCCAACTCCA+GGG | - | chr3_4:6562064-6562083 | None:intergenic | 45.0% | |
| AAGCAAACCTTTCCAACTCC+AGG | - | chr3_4:6562065-6562084 | None:intergenic | 45.0% | |
| !! | TGCAGCATTGGCAATAGGAA+AGG | - | chr3_4:6562432-6562451 | None:intergenic | 45.0% |
| TCTTCCATTCAGTCCAGAAC+GGG | - | chr3_4:6562670-6562689 | None:intergenic | 45.0% | |
| ! | CCCTGAGCAAATTTGTTCTC+TGG | - | chr3_4:6562729-6562748 | None:intergenic | 45.0% |
| TTTGCTCAGGGCGATTATGA+AGG | + | chr3_4:6562738-6562757 | Msa0487550:CDS | 45.0% | |
| !!! | ATTAAAATTTTGAAATTTTA+GGG | - | chr3_4:6556816-6556835 | None:intergenic | 5.0% |
| !!! | CTTAAAATTTTAAAATTATT+AGG | - | chr3_4:6558753-6558772 | None:intergenic | 5.0% |
| ! | TCTTCATCAACAGGTGGTGG+TGG | - | chr3_4:6556519-6556538 | None:intergenic | 50.0% |
| GGCCAAAATTCACCACCATC+TGG | + | chr3_4:6557357-6557376 | Msa0487550:intron | 50.0% | |
| TTTGATCCCAACCCAGATGG+TGG | - | chr3_4:6557372-6557391 | None:intergenic | 50.0% | |
| ! | CCGCTCCTTTTCTCTACTTC+TGG | - | chr3_4:6557768-6557787 | None:intergenic | 50.0% |
| AGAGAAAAGGAGCGGGAGAA+TGG | + | chr3_4:6557773-6557792 | Msa0487550:CDS | 50.0% | |
| GAGAAAAGGAGCGGGAGAAT+GGG | + | chr3_4:6557774-6557793 | Msa0487550:CDS | 50.0% | |
| GAAGAGACAGGGATAGAAGC+AGG | + | chr3_4:6557825-6557844 | Msa0487550:CDS | 50.0% | |
| ACAGGGATAGAAGCAGGGAT+AGG | + | chr3_4:6557831-6557850 | Msa0487550:CDS | 50.0% | |
| CAGGGATAGAAGCAGGGATA+GGG | + | chr3_4:6557832-6557851 | Msa0487550:CDS | 50.0% | |
| ACAGAGAGAGTGAGAGAAGC+AGG | + | chr3_4:6557873-6557892 | Msa0487550:CDS | 50.0% | |
| CAGAGAGAGTGAGAGAAGCA+GGG | + | chr3_4:6557874-6557893 | Msa0487550:CDS | 50.0% | |
| TCAGAGATAGGGAGAGAAGC+AGG | + | chr3_4:6557903-6557922 | Msa0487550:CDS | 50.0% | |
| CAGAGATAGGGAGAGAAGCA+GGG | + | chr3_4:6557904-6557923 | Msa0487550:CDS | 50.0% | |
| CTCTATGATGGTCACGGTCA+CGG | - | chr3_4:6558003-6558022 | None:intergenic | 50.0% | |
| GGCGATCTCTATGATGGTCA+CGG | - | chr3_4:6558009-6558028 | None:intergenic | 50.0% | |
| ACCATCATAGAGATCGCCAC+AGG | + | chr3_4:6558011-6558030 | Msa0487550:CDS | 50.0% | |
| CCATCATAGAGATCGCCACA+GGG | + | chr3_4:6558012-6558031 | Msa0487550:CDS | 50.0% | |
| TTCTCTCACTACGATCCCTG+TGG | - | chr3_4:6558030-6558049 | None:intergenic | 50.0% | |
| CAGGGATCGTAGTGAGAGAA+AGG | + | chr3_4:6558030-6558049 | Msa0487550:CDS | 50.0% | |
| ! | ACGAAGGGAGTATGATCGAG+AGG | + | chr3_4:6558311-6558330 | Msa0487550:CDS | 50.0% |
| ! | GGGAGTATGATCGAGAGGAT+AGG | + | chr3_4:6558316-6558335 | Msa0487550:CDS | 50.0% |
| GAGAGGATAGGCATAGGAGT+AGG | + | chr3_4:6558328-6558347 | Msa0487550:CDS | 50.0% | |
| GTTCTCGTTCACGCTCCAAA+AGG | + | chr3_4:6558409-6558428 | Msa0487550:CDS | 50.0% | |
| !! | CGACTGGAACAACTTGTTGC+AGG | - | chr3_4:6558990-6559009 | None:intergenic | 50.0% |
| CAACACACATTGGACTCGAC+TGG | - | chr3_4:6559006-6559025 | None:intergenic | 50.0% | |
| TCCCCCTACTTCTGCGATAT+TGG | + | chr3_4:6559424-6559443 | Msa0487550:CDS | 50.0% | |
| CCCAATATCGCAGAAGTAGG+GGG | - | chr3_4:6559428-6559447 | None:intergenic | 50.0% | |
| CCCCCTACTTCTGCGATATT+GGG | + | chr3_4:6559425-6559444 | Msa0487550:CDS | 50.0% | |
| GCACCCAATATCGCAGAAGT+AGG | - | chr3_4:6559431-6559450 | None:intergenic | 50.0% | |
| ! | TCTGCGATATTGGGTGCTAC+TGG | + | chr3_4:6559434-6559453 | Msa0487550:CDS | 50.0% |
| !! | CAGGTGCATTGATTCCTCCT+TGG | - | chr3_4:6559848-6559867 | None:intergenic | 50.0% |
| TCTGACCTGCAAGTACAGCA+AGG | - | chr3_4:6560154-6560173 | None:intergenic | 50.0% | |
| GTACTTGCAGGTCAGATCTC+TGG | + | chr3_4:6560158-6560177 | Msa0487550:intron | 50.0% | |
| ACTTGCAGGTCAGATCTCTG+GGG | + | chr3_4:6560160-6560179 | Msa0487550:intron | 50.0% | |
| GTTTCCCCTGCCTACAAATC+AGG | + | chr3_4:6560217-6560236 | Msa0487550:CDS | 50.0% | |
| !! | GTTCCCAATTCTGGTTCTGC+TGG | + | chr3_4:6560253-6560272 | Msa0487550:intron | 50.0% |
| AGGCTACACGACATGCTAGA+CGG | + | chr3_4:6560480-6560499 | Msa0487550:intron | 50.0% | |
| CATGCTAGACGGGTGTATGT+TGG | + | chr3_4:6560491-6560510 | Msa0487550:CDS | 50.0% | |
| GCTCATTAGCTGTAGGAGAG+AGG | - | chr3_4:6560520-6560539 | None:intergenic | 50.0% | |
| CTCTCCTACAGCTAATGAGC+AGG | + | chr3_4:6560520-6560539 | Msa0487550:CDS | 50.0% | |
| ACAATTGGAGGAAACACCGC+TGG | + | chr3_4:6560880-6560899 | Msa0487550:CDS | 50.0% | |
| AGCCAGCAATGCAATGGCTT+TGG | + | chr3_4:6560981-6561000 | Msa0487550:CDS | 50.0% | |
| AATTCAGGGTGCACCAGTGA+AGG | + | chr3_4:6561110-6561129 | Msa0487550:intron | 50.0% | |
| !! | AGGTTTGGGTTAGGTTGGCT+TGG | - | chr3_4:6561183-6561202 | None:intergenic | 50.0% |
| GGCTTAGTTGGACTATCACC+TGG | + | chr3_4:6561210-6561229 | Msa0487550:CDS | 50.0% | |
| ! | GAGACTTTTGGTCCTCTTCG+GGG | + | chr3_4:6561321-6561340 | Msa0487550:intron | 50.0% |
| ATTGCCTGTGCAGCTCTCAA+TGG | + | chr3_4:6561426-6561445 | Msa0487550:intron | 50.0% | |
| AGCAGATTGCTCTGCAGGTA+TGG | + | chr3_4:6561553-6561572 | Msa0487550:intron | 50.0% | |
| AGATTGCTCTGCAGGTATGG+TGG | + | chr3_4:6561556-6561575 | Msa0487550:intron | 50.0% | |
| GATTGCTCTGCAGGTATGGT+GGG | + | chr3_4:6561557-6561576 | Msa0487550:intron | 50.0% | |
| !! | ACCAGCATTGGTGGCAACAA+AGG | + | chr3_4:6561680-6561699 | Msa0487550:CDS | 50.0% |
| ACCTTTGTTGCCACCAATGC+TGG | - | chr3_4:6561684-6561703 | None:intergenic | 50.0% | |
| ! | ATTCAGTCCAGAACGGGCTT+TGG | - | chr3_4:6562664-6562683 | None:intergenic | 50.0% |
| ! | AAAGCCCGTTCTGGACTGAA+TGG | + | chr3_4:6562663-6562682 | Msa0487550:CDS | 50.0% |
| TCAGCTGGAATAGCACCTGA+TGG | + | chr3_4:6562873-6562892 | Msa0487550:three_prime_UTR | 50.0% | |
| !! | TCATCAACAGGTGGTGGTGG+TGG | - | chr3_4:6556516-6556535 | None:intergenic | 55.0% |
| GCGGGAGAATGGGAGAGAAA+AGG | + | chr3_4:6557784-6557803 | Msa0487550:CDS | 55.0% | |
| AGAGTGAGAGAAGCAGGGAC+AGG | + | chr3_4:6557879-6557898 | Msa0487550:CDS | 55.0% | |
| GAGTGAGAGAAGCAGGGACA+GGG | + | chr3_4:6557880-6557899 | Msa0487550:CDS | 55.0% | |
| CAGGGACAGGGTCAGAGATA+GGG | + | chr3_4:6557892-6557911 | Msa0487550:CDS | 55.0% | |
| ATAGGGAGAGAAGCAGGGAC+AGG | + | chr3_4:6557909-6557928 | Msa0487550:CDS | 55.0% | |
| TAGGGAGAGAAGCAGGGACA+GGG | + | chr3_4:6557910-6557929 | Msa0487550:CDS | 55.0% | |
| GCAAAGACAGGGAACGCGAT+CGG | + | chr3_4:6557951-6557970 | Msa0487550:CDS | 55.0% | |
| CAAAGACAGGGAACGCGATC+GGG | + | chr3_4:6557952-6557971 | Msa0487550:CDS | 55.0% | |
| ATCGGGATGGGGAGAAGGAA+AGG | + | chr3_4:6557969-6557988 | Msa0487550:CDS | 55.0% | |
| TCGGGATGGGGAGAAGGAAA+GGG | + | chr3_4:6557970-6557989 | Msa0487550:CDS | 55.0% | |
| ATGGGGAGAAGGAAAGGGAG+AGG | + | chr3_4:6557975-6557994 | Msa0487550:CDS | 55.0% | |
| TGGGGAGAAGGAAAGGGAGA+GGG | + | chr3_4:6557976-6557995 | Msa0487550:CDS | 55.0% | |
| CCCTGTGGCGATCTCTATGA+TGG | - | chr3_4:6558015-6558034 | None:intergenic | 55.0% | |
| ACAGAAGCCGAGGCTATGAC+AGG | + | chr3_4:6558086-6558105 | Msa0487550:CDS | 55.0% | |
| ATAGGCATAGGAGTAGGCGC+CGG | + | chr3_4:6558334-6558353 | Msa0487550:CDS | 55.0% | |
| GCCGGTCTCGATCTAGATCA+AGG | + | chr3_4:6558352-6558371 | Msa0487550:CDS | 55.0% | |
| !! | TTGGGTGCTACTGGTGTTGC+AGG | + | chr3_4:6559443-6559462 | Msa0487550:CDS | 55.0% |
| ! | TAGCCCCACTGTGCTGACAA+TGG | + | chr3_4:6559793-6559812 | Msa0487550:intron | 55.0% |
| ! | AGCCCCACTGTGCTGACAAT+GGG | + | chr3_4:6559794-6559813 | Msa0487550:intron | 55.0% |
| ACGCCCATTGTCAGCACAGT+GGG | - | chr3_4:6559800-6559819 | None:intergenic | 55.0% | |
| GGCTACACGACATGCTAGAC+GGG | + | chr3_4:6560481-6560500 | Msa0487550:intron | 55.0% | |
| GCTAGACGGGTGTATGTTGG+TGG | + | chr3_4:6560494-6560513 | Msa0487550:CDS | 55.0% | |
| AACTGCATCACCTGGACCAG+CGG | - | chr3_4:6560899-6560918 | None:intergenic | 55.0% | |
| GTAGGTCTCCTGACCTTCAC+TGG | - | chr3_4:6561126-6561145 | None:intergenic | 55.0% | |
| !! | GTTAGGTTGGCTTGGCCCTA+GGG | - | chr3_4:6561175-6561194 | None:intergenic | 55.0% |
| !! | GACTATCACCTGGCTCTGCT+GGG | + | chr3_4:6561220-6561239 | Msa0487550:CDS | 55.0% |
| !! | ACTATCACCTGGCTCTGCTG+GGG | + | chr3_4:6561221-6561240 | Msa0487550:CDS | 55.0% |
| ! | GGGGACTTGATGGTCCTGAT+CGG | + | chr3_4:6561241-6561260 | Msa0487550:CDS | 55.0% |
| ACAGCAGCAGATTGCTCTGC+AGG | + | chr3_4:6561548-6561567 | Msa0487550:CDS | 55.0% | |
| ACAGTTCACCATCAGGCCGT+GGG | - | chr3_4:6562040-6562059 | None:intergenic | 55.0% | |
| ACTGTGCCCTGGAGTTGGAA+AGG | + | chr3_4:6562055-6562074 | Msa0487550:CDS | 55.0% | |
| GGTTCTACCAAAGCCCGTTC+TGG | + | chr3_4:6562654-6562673 | Msa0487550:CDS | 55.0% | |
| GCTGGAATAGCACCTGATGG+AGG | + | chr3_4:6562876-6562895 | Msa0487550:three_prime_UTR | 55.0% | |
| !! | TCAACAGGTGGTGGTGGTGG+TGG | - | chr3_4:6556513-6556532 | None:intergenic | 60.0% |
| GCAGGGACAGGGTCAGAGAT+AGG | + | chr3_4:6557891-6557910 | Msa0487550:CDS | 60.0% | |
| AGGGAGAGAAGCAGGGACAG+GGG | + | chr3_4:6557911-6557930 | Msa0487550:CDS | 60.0% | |
| ACAGGGAACGCGATCGGGAT+GGG | + | chr3_4:6557957-6557976 | Msa0487550:CDS | 60.0% | |
| AAGGATATGCGCGAGGGGAC+TGG | + | chr3_4:6558548-6558567 | Msa0487550:intron | 60.0% | |
| CGCCCATTGTCAGCACAGTG+GGG | - | chr3_4:6559799-6559818 | None:intergenic | 60.0% | |
| CACGCCCATTGTCAGCACAG+TGG | - | chr3_4:6559801-6559820 | None:intergenic | 60.0% | |
| GGGGCAAGTCCTGCTATTCC+TGG | + | chr3_4:6560179-6560198 | Msa0487550:CDS | 60.0% | |
| AGGGTGCACCAGTGAAGGTC+AGG | + | chr3_4:6561115-6561134 | Msa0487550:intron | 60.0% | |
| CCTAGGGCAGCAGCTAGAGA+CGG | - | chr3_4:6561159-6561178 | None:intergenic | 60.0% | |
| CGTCTCTAGCTGCTGCCCTA+GGG | + | chr3_4:6561157-6561176 | Msa0487550:CDS | 60.0% | |
| !! | GGTTAGGTTGGCTTGGCCCT+AGG | - | chr3_4:6561176-6561195 | None:intergenic | 60.0% |
| !! | GGACTATCACCTGGCTCTGC+TGG | + | chr3_4:6561219-6561238 | Msa0487550:CDS | 60.0% |
| !! | CTATCACCTGGCTCTGCTGG+GGG | + | chr3_4:6561222-6561241 | Msa0487550:CDS | 60.0% |
| ATGTGGTGATCCCTCGCCCA+CGG | + | chr3_4:6562021-6562040 | Msa0487550:CDS | 60.0% | |
| CACAGTTCACCATCAGGCCG+TGG | - | chr3_4:6562041-6562060 | None:intergenic | 60.0% | |
| CCAGGGCACAGTTCACCATC+AGG | - | chr3_4:6562047-6562066 | None:intergenic | 60.0% | |
| ! | CCTGATGGTGAACTGTGCCC+TGG | + | chr3_4:6562044-6562063 | Msa0487550:CDS | 60.0% |
| GGTGAACTGTGCCCTGGAGT+TGG | + | chr3_4:6562050-6562069 | Msa0487550:CDS | 60.0% | |
| !! | GGTGGTGGTGGTGGTGGTTG+TGG | - | chr3_4:6556504-6556523 | None:intergenic | 65.0% |
| !! | ACAGGTGGTGGTGGTGGTGG+TGG | - | chr3_4:6556510-6556529 | None:intergenic | 65.0% |
| GACAGGGAACGCGATCGGGA+TGG | + | chr3_4:6557956-6557975 | Msa0487550:CDS | 65.0% | |
| CAGGGAACGCGATCGGGATG+GGG | + | chr3_4:6557958-6557977 | Msa0487550:CDS | 65.0% | |
| ACGCGATCGGGATGGGGAGA+AGG | + | chr3_4:6557964-6557983 | Msa0487550:CDS | 65.0% | |
| GGAGGAAACACCGCTGGTCC+AGG | + | chr3_4:6560886-6560905 | Msa0487550:CDS | 65.0% | |
| CCGTCTCTAGCTGCTGCCCT+AGG | + | chr3_4:6561156-6561175 | Msa0487550:CDS | 65.0% | |
| TCAAGTCCCCCAGCAGAGCC+AGG | - | chr3_4:6561231-6561250 | None:intergenic | 65.0% | |
| GGCTCTGCTGGGGGACTTGA+TGG | + | chr3_4:6561231-6561250 | Msa0487550:CDS | 65.0% | |
| ATCCCTCGCCCACGGCCTGA+TGG | + | chr3_4:6562029-6562048 | Msa0487550:CDS | 70.0% | |
| CACCATCAGGCCGTGGGCGA+GGG | - | chr3_4:6562034-6562053 | None:intergenic | 70.0% | |
| TCACCATCAGGCCGTGGGCG+AGG | - | chr3_4:6562035-6562054 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 6556351 | 6562967 | 6556351 | ID=Msa0487550;Name=Msa0487550 |
| chr3_4 | mRNA | 6556351 | 6562967 | 6556351 | ID=Msa0487550-mRNA-1;Parent=Msa0487550;Name=Msa0487550-mRNA-1;_AED=0.24;_eAED=0.24;_QI=72|0.91|0.84|1|1|1|13|203|552 |
| chr3_4 | exon | 6556351 | 6556563 | 6556351 | ID=Msa0487550-mRNA-1:exon:2267;Parent=Msa0487550-mRNA-1 |
| chr3_4 | exon | 6557728 | 6558107 | 6557728 | ID=Msa0487550-mRNA-1:exon:2268;Parent=Msa0487550-mRNA-1 |
| chr3_4 | exon | 6558311 | 6558430 | 6558311 | ID=Msa0487550-mRNA-1:exon:2269;Parent=Msa0487550-mRNA-1 |
| chr3_4 | exon | 6559397 | 6559464 | 6559397 | ID=Msa0487550-mRNA-1:exon:2270;Parent=Msa0487550-mRNA-1 |
| chr3_4 | exon | 6560168 | 6560238 | 6560168 | ID=Msa0487550-mRNA-1:exon:2271;Parent=Msa0487550-mRNA-1 |
| chr3_4 | exon | 6560321 | 6560374 | 6560321 | ID=Msa0487550-mRNA-1:exon:2272;Parent=Msa0487550-mRNA-1 |
| chr3_4 | exon | 6560482 | 6560541 | 6560482 | ID=Msa0487550-mRNA-1:exon:2273;Parent=Msa0487550-mRNA-1 |
| chr3_4 | exon | 6560847 | 6561020 | 6560847 | ID=Msa0487550-mRNA-1:exon:2274;Parent=Msa0487550-mRNA-1 |
| chr3_4 | exon | 6561117 | 6561273 | 6561117 | ID=Msa0487550-mRNA-1:exon:2275;Parent=Msa0487550-mRNA-1 |
| chr3_4 | exon | 6561478 | 6561569 | 6561478 | ID=Msa0487550-mRNA-1:exon:2276;Parent=Msa0487550-mRNA-1 |
| chr3_4 | exon | 6561666 | 6561801 | 6561666 | ID=Msa0487550-mRNA-1:exon:2277;Parent=Msa0487550-mRNA-1 |
| chr3_4 | exon | 6562009 | 6562076 | 6562009 | ID=Msa0487550-mRNA-1:exon:2278;Parent=Msa0487550-mRNA-1 |
| chr3_4 | exon | 6562627 | 6562967 | 6562627 | ID=Msa0487550-mRNA-1:exon:2279;Parent=Msa0487550-mRNA-1 |
| chr3_4 | five_prime_UTR | 6556351 | 6556422 | 6556351 | ID=Msa0487550-mRNA-1:five_prime_utr;Parent=Msa0487550-mRNA-1 |
| chr3_4 | CDS | 6556423 | 6556563 | 6556423 | ID=Msa0487550-mRNA-1:cds;Parent=Msa0487550-mRNA-1 |
| chr3_4 | CDS | 6557728 | 6558107 | 6557728 | ID=Msa0487550-mRNA-1:cds;Parent=Msa0487550-mRNA-1 |
| chr3_4 | CDS | 6558311 | 6558430 | 6558311 | ID=Msa0487550-mRNA-1:cds;Parent=Msa0487550-mRNA-1 |
| chr3_4 | CDS | 6559397 | 6559464 | 6559397 | ID=Msa0487550-mRNA-1:cds;Parent=Msa0487550-mRNA-1 |
| chr3_4 | CDS | 6560168 | 6560238 | 6560168 | ID=Msa0487550-mRNA-1:cds;Parent=Msa0487550-mRNA-1 |
| chr3_4 | CDS | 6560321 | 6560374 | 6560321 | ID=Msa0487550-mRNA-1:cds;Parent=Msa0487550-mRNA-1 |
| chr3_4 | CDS | 6560482 | 6560541 | 6560482 | ID=Msa0487550-mRNA-1:cds;Parent=Msa0487550-mRNA-1 |
| chr3_4 | CDS | 6560847 | 6561020 | 6560847 | ID=Msa0487550-mRNA-1:cds;Parent=Msa0487550-mRNA-1 |
| chr3_4 | CDS | 6561117 | 6561273 | 6561117 | ID=Msa0487550-mRNA-1:cds;Parent=Msa0487550-mRNA-1 |
| chr3_4 | CDS | 6561478 | 6561569 | 6561478 | ID=Msa0487550-mRNA-1:cds;Parent=Msa0487550-mRNA-1 |
| chr3_4 | CDS | 6561666 | 6561801 | 6561666 | ID=Msa0487550-mRNA-1:cds;Parent=Msa0487550-mRNA-1 |
| chr3_4 | CDS | 6562009 | 6562076 | 6562009 | ID=Msa0487550-mRNA-1:cds;Parent=Msa0487550-mRNA-1 |
| chr3_4 | CDS | 6562627 | 6562764 | 6562627 | ID=Msa0487550-mRNA-1:cds;Parent=Msa0487550-mRNA-1 |
| chr3_4 | three_prime_UTR | 6562765 | 6562967 | 6562765 | ID=Msa0487550-mRNA-1:three_prime_utr;Parent=Msa0487550-mRNA-1 |
| Gene Sequence |
| Protein sequence |
