AlfalfaGEDB | Msa0102200

M. sativa cultivar zhongmu-4 / Msa0102200

KEGG: K12818
GO: -
PFAM: PF00575.26

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0102200	KEH40209.1	98.052	1078	13	3	1	1071	147	1223	0.0	2164

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0102200	sp\|Q38953\|DEAH5_ARATH	90.654	963	88	2	111	1071	206	1168	0.0	1797

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0102200	A0A396JH75	98.052	1078	13	3	1	1071	147	1223	0.0	2164

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0031340	Msa0102200	0.814860	1.242492e-51	-8.615850e-47
Msa0034110	Msa0102200	0.812942	3.289278e-51	-8.615850e-47
Msa0036140	Msa0102200	0.819138	1.359169e-52	-8.615850e-47
Msa0044260	Msa0102200	0.806824	6.816882e-50	-8.615850e-47
Msa0051020	Msa0102200	0.804063	2.585449e-49	-8.615850e-47
Msa0068680	Msa0102200	0.817000	4.137976e-52	-8.615850e-47
Msa0080090	Msa0102200	0.817393	3.376138e-52	-8.615850e-47
Msa0084080	Msa0102200	0.804905	1.725824e-49	-8.615850e-47
Msa0101270	Msa0102200	0.800971	1.121884e-48	-8.615850e-47
Msa0102200	Msa0114060	0.829429	5.172899e-55	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa0102200	MtrunA17_Chr1g0156271	98.052	1078	13	3	1	1071	147	1223	2164
Msa0102200	MtrunA17_Chr1g0211961	96.236	983	36	1	90	1071	206	1188	1934
Msa0102200	MtrunA17_Chr3g0086391	57.845	631	264	2	410	1038	404	1034	794
Msa0102200	MtrunA17_Chr3g0100131	47.199	839	389	11	240	1050	420	1232	782
Msa0102200	MtrunA17_Chr2g0329131	47.579	826	379	11	253	1050	412	1211	779
Msa0102200	MtrunA17_Chr1g0194381	52.584	658	294	5	411	1051	50	706	726
Msa0102200	MtrunA17_Chr3g0099251	49.776	671	292	6	407	1033	44	713	686
Msa0102200	MtrunA17_Chr4g0044491	48.926	652	294	4	411	1051	51	674	657
Msa0102200	MtrunA17_Chr2g0283271	47.939	655	318	5	411	1042	46	700	634
Msa0102200	MtrunA17_Chr7g0259941	46.501	686	308	6	411	1038	41	725	630

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa0102200	AT3G26560.1	90.654	963	88	2	111	1071	206	1168	1797
Msa0102200	AT1G32490.2	56.641	655	281	3	395	1046	370	1024	815
Msa0102200	AT1G32490.1	56.641	655	281	3	395	1046	380	1034	815
Msa0102200	AT2G35340.1	55.659	645	284	2	404	1046	390	1034	793
Msa0102200	AT2G35340.2	55.659	645	284	2	404	1046	252	896	791
Msa0102200	AT5G13010.1	48.399	812	367	10	253	1038	399	1184	780
Msa0102200	AT4G16680.2	56.811	646	270	4	412	1052	129	770	775
Msa0102200	AT3G62310.1	52.030	665	296	7	411	1057	54	713	717
Msa0102200	AT2G47250.1	51.095	685	305	9	391	1057	45	717	716
Msa0102200	AT4G18465.1	47.766	649	315	6	410	1035	40	687	624

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Find 414 sgRNAs with CRISPR-Local

Find 566 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACAAAATTAGAACTATT+AGG	0.223070	1_3:-8918646	Msa0102200:three_prime_UTR
AAAACATGCTGCCTAAACAC+AGG	0.667357	1_3:+8918831	None:intergenic
AAAAGGGGAATGGTAGAGAT+AGG	0.363152	1_3:-8924497	Msa0102200:CDS
AAAATCTAACACCAGGTCCA+GGG	0.615518	1_3:-8919063	Msa0102200:three_prime_UTR
AAAATTAGAACTATTAGGGT+TGG	0.484498	1_3:-8918641	Msa0102200:three_prime_UTR
AAACAAAATTAGAACTATTA+GGG	0.332052	1_3:-8918645	Msa0102200:three_prime_UTR
AAACAAAGAGCTGGACGTGC+AGG	0.444145	1_3:-8922443	Msa0102200:CDS
AAACAGCAAGCAGCGTAAGA+TGG	0.556576	1_3:+8921973	None:intergenic
AAACCAAAATCTTATAAAGA+AGG	0.443153	1_3:+8918426	None:intergenic
AAACGAAGGGAATCACAGAG+AGG	0.726374	1_3:-8918707	Msa0102200:three_prime_UTR

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GAGATAGATATGATAAAAGG+GGG	-	chr1_3:8917896-8917915	Msa0102200:three_prime_UTR	30.0%
GGTATGAAAGAGATGATAAA+AGG	-	chr1_3:8918028-8918047	Msa0102200:three_prime_UTR	30.0%
ATGAAAGAGATGATAAAAGG+GGG	-	chr1_3:8918076-8918095	Msa0102200:three_prime_UTR	30.0%
GGATTCTTAAAGATCTTAAC+AGG	+	chr1_3:8918834-8918853	None:intergenic	30.0%
AACAAGATAATTATAGGCTC+AGG	+	chr1_3:8920988-8921007	None:intergenic	30.0%
GTTTGTAATTTGGTTAGTGA+AGG	-	chr1_3:8921005-8921024	Msa0102200:intron	30.0%
AATAATCTACAGCTACACAA+AGG	+	chr1_3:8921108-8921127	None:intergenic	30.0%
AAACTTCACAAAGATTAGGA+AGG	-	chr1_3:8921612-8921631	Msa0102200:intron	30.0%
TGACAACAAAGGAATATATG+CGG	-	chr1_3:8921785-8921804	Msa0102200:intron	30.0%
AGAGCCAATAACATTAGATT+TGG	-	chr1_3:8922615-8922634	Msa0102200:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_3	gene	8917889	8924676	8917889	ID=Msa0102200;Name=Msa0102200
chr1_3	mRNA	8917889	8924676	8917889	ID=Msa0102200-mRNA-1;Parent=Msa0102200;Name=Msa0102200-mRNA-1;_AED=0.11;_eAED=0.11;_QI=0\|1\|1\|1\|0.5\|0.66\|3\|1900\|1071
chr1_3	exon	8917889	8919722	8917889	ID=Msa0102200-mRNA-1:exon:3543;Parent=Msa0102200-mRNA-1
chr1_3	exon	8920524	8920983	8920524	ID=Msa0102200-mRNA-1:exon:3542;Parent=Msa0102200-mRNA-1
chr1_3	exon	8921855	8924676	8921855	ID=Msa0102200-mRNA-1:exon:3541;Parent=Msa0102200-mRNA-1
chr1_3	CDS	8921855	8924676	8921855	ID=Msa0102200-mRNA-1:cds;Parent=Msa0102200-mRNA-1
chr1_3	CDS	8920590	8920983	8920590	ID=Msa0102200-mRNA-1:cds;Parent=Msa0102200-mRNA-1
chr1_3	three_prime_UTR	8920524	8920589	8920524	ID=Msa0102200-mRNA-1:three_prime_utr;Parent=Msa0102200-mRNA-1
chr1_3	three_prime_UTR	8917889	8919722	8917889	ID=Msa0102200-mRNA-1:three_prime_utr;Parent=Msa0102200-mRNA-1

Gene Sequence

>Msa0102200

AGACATAGAGATAGATATGATAAAAGGGGGAATGATAGAGATAGAGATAGACGCGAAAGAGACGATAAAAGGGGGAGTGATAGAGATCGTGATAGGCGCGAAAGAGATAATACAAGGGGCAATGCTAGAGATAGAGATAGGTATGAAAGAGATGATAAAAAGGGGAATGGTAGAGATAGGGATAGGTATGAAAGAGATGATAAAAGGGGGAATGGTAGGGATCGTTATGAGAGGCAAAGGAGAGATGAGTATGAGGAAGATGGAAGTGGGAGGGAGGAGAATGGTGGTGATGAGAAAGGGAGGGGAGGAAGAGATACGAGGCGTGGTGGTGGTGGTTCTGGTGAGCCGGAGTTGTATATGGTTTATAAAGGAAGAATTTCGAGGGTGATGGATACAGGGTGTTTTGTTTCGTTGGATGAGTTTAGAGGGAAAGAGGGTTTGGTTCATGTTTCTCAGATGGCTACTAGGAAGATTGTGAATGCTAAGGAGGTTGTTAAGAGGGATCAACAGGTTTATGTGAAGGTGATTTCGGTTTCTGGGTCGAAGTTGAGTTTGTCTATGAGGGATGTTGATCAGCACAGTGGGAAGGATTTACTTCCGTTGAAGAAGAGTTCGGAGGAAGAGGCTTTTAGGACGAATCCACAAGATTCAAAGGATGGGCCGGTGGCGAGGACCGGGCTTTCTGGGATTAGGATTGTGGAGGAGGATGATATGGGTTCTTCGCGTAGGCCGTTGAAGAGAATGAGCTCTCCTGAGAGATGGGAAGCGAAACAGTTGATTGCTTCGGGGGTTTTGAGTGTTTCAGAGTATCCGACTTATGATGATGAGGGAGATGGAGTGATGTACCAAGAAGAAGGTGCTGAGGAAGAGCTTGAGATAGAGATGAATGAAGATGAGCCTGCTTTTTTGCAGGGGCAGAGCAGATACTCGATGGATATGTCTCCTGTTAAGATCTTTAAGAATCCTGAAGGTTCTCTGGGTCGTGCTGCTGCACTACAGTCCGCGCTTATAAAGGAGAGAAGGGAAGTAAGAGAACAACAGCAGCGTACCATGCTTGATTCTATTCCAAAGGATCTCAATCGTCCGTGGGAAGATCCTATGCCAGAGTCAGGTGAAAGGCATCTTGCTCAGGAGTTGAGGGGTGTTGGTTTATCGGCCTATGATATGCCTGAATGGAAGAAGGATGCCTATGGGAAAACCATTACTTTTGGGCAAAGGTCTAAGCTTTCTATTCAAGAACAGAGGCAGAGTTTGCCAATTTACAAGTTAAAAAAAGAATTGATTCAGGCTGTCCATGATAATCAGGTCTTGGTTGTGATTGGTGAAACCGGTTCGGGTAAGACTACTCAGGTCACACAGTATCTTGCTGAAGCGGGTTACACCACCAGAGGTAAAATTGGATGTACTCAACCCCGTAGGGTGGCTGCAATGTCAGTTGCAAAGAGAGTTGCTGAAGAGTTTGGGTGTAGATTAGGAGAGGAAGTTGGCTATGCCATTCGATTTGAGGATTGCACTGGACCTGATACCGTAATCAAGTACATGACCGATGGTATGCTTCTTAGAGAAATATTGGTTGATGAGAATCTGTCACAGTATTCTGTTATAATGCTTGATGAAGCCCATGAGAGAACTATTCATACGGATGTTCTTTTCGGACTACTGAAGCAGCTGGTGAAGCGTAGACCTGAGTTGCGATTGATTGTCACATCAGCTACTCTTGATGCCGAAAAGTTTTCAGGATATTTCTTTAACTGTAACATCTTCACAATTCCTGGAAGAACTTTTCCTGTGGAGATACTTTATACTAAACAGCCAGAAAGCGATTACTTGGATGCATCTTTGATCACTGTCCTACAGATTCATTTGACAGAACCTGAAGGAGACATTCTTCTCTTCTTAACTGGACAGGAGGAGATTGATTTTGCTTGCCAGTCTCTCTATGAGCGAATGAAAGGATTAGGCAAGAATGTCCCAGAGCTGATCATTTTACCTGTTTATAGTGCCCTTCCTAGTGAAATGCAATCTAGGATATTCGATCCTGCTCCTCCCGGGAAACGGAAAGTGGTTGTGGCTACAAACATTGCTGAGGCATCTTTGACTATTGATGGAATATTTTATGTTATTGATCCGGGGTTTGCTAAGCAAAATGTTTATAACCCGAAGCAAGGTCTTGATTCCTTGGTGATAACTCCGATATCACAAGCGTCTGCCAAACAAAGAGCTGGACGTGCAGGGCGTACTGGACCTGGAAAGTGTTATCGCCTCTATACTGAGAGTGCATATAGAAATGAAATGTCTCCTACTTCTATTCCAGAGATTCAAAGGATAAATTTGGGCATGACAACTCTTAGCATGAAAGCCATGGGCATAAATGATCTTCTGTCATTTGATTTTATGGATCCACCATCACCTCAAGCACTTATTTCCGCCATGGAGCAGCTTTACAGTCTTGGAGCTTTGGATGAAGAGGGTCTTCTAACCAAATTGGGGAGGAAAATGGCTGAGTTTCCTTTGGATCCGCCGCTGTCCAAGATGTTGCTTGCCAGTGTAGACCTTGGGTGCAGTGATGAGATTTTGACCATAATTGCCATGATTCAGACTGGCAATATATTTTACAGGCCCAGGGAGAAACAAGCCCAAGCAGATCAGAAAAGGGCAAGGTTTTTCCAGCCAGAGGGTGACCATCTTACGCTGCTTGCTGTTTATGAATCCTGGAAAAATAAAAACTTTTCTGGACCTTGGTGTTTTGAGAACTTTGTTCAATCTCGATCGTTGAGAAGAGCCCAGGATGTAAGGAAACAGCTTCTCACTATCATGGATAAGTACAAATTGGATGTTGTGAGCGCTGGAAAAAACTTCACAAAGATTAGGAAGGCTATCACTGCAGGGTTCTTTTTTCATGCAGCAAGAAAGGACCCCCAGGAAGGTTACAGAACACTAGTTGAGAATCAGCCTGTGTATATCCATCCAAGTTCAGCTTTGTTCCAGAGGCAACCAGACTGGGTCATATACCATGAGCTTGTAATGACAACAAAGGAATATATGCGGGAAGTCACAGTCATAGACCCCAAATGGCTTGTTGAATTGGCTCCAAGATTCTTCAAAGTTGCAGATCCCACAAAGATGAGCAAACGGAAGCGTCAAGAGCGTATTGAACCGCTTTATGATAGATACCACGAGCCAAACTCATGGCGTTTGAGTAAACGCCGTGCTTGA

Protein sequence

>Msa0102200

RHRDRYDKRGNDRDRDRRERDDKRGSDRDRDRRERDNTRGNARDRDRYERDDKKGNGRDRDRYERDDKRGNGRDRYERQRRDEYEEDGSGREENGGDEKGRGGRDTRRGGGGSGEPELYMVYKGRISRVMDTGCFVSLDEFRGKEGLVHVSQMATRKIVNAKEVVKRDQQVYVKVISVSGSKLSLSMRDVDQHSGKDLLPLKKSSEEEAFRTNPQDSKDGPVARTGLSGIRIVEEDDMGSSRRPLKRMSSPERWEAKQLIASGVLSVSEYPTYDDEGDGVMYQEEGAEEELEIEMNEDEPAFLQGQSRYSMDMSPVKIFKNPEGSLGRAAALQSALIKERREVREQQQRTMLDSIPKDLNRPWEDPMPESGERHLAQELRGVGLSAYDMPEWKKDAYGKTITFGQRSKLSIQEQRQSLPIYKLKKELIQAVHDNQVLVVIGETGSGKTTQVTQYLAEAGYTTRGKIGCTQPRRVAAMSVAKRVAEEFGCRLGEEVGYAIRFEDCTGPDTVIKYMTDGMLLREILVDENLSQYSVIMLDEAHERTIHTDVLFGLLKQLVKRRPELRLIVTSATLDAEKFSGYFFNCNIFTIPGRTFPVEILYTKQPESDYLDASLITVLQIHLTEPEGDILLFLTGQEEIDFACQSLYERMKGLGKNVPELIILPVYSALPSEMQSRIFDPAPPGKRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQGLDSLVITPISQASAKQRAGRAGRTGPGKCYRLYTESAYRNEMSPTSIPEIQRINLGMTTLSMKAMGINDLLSFDFMDPPSPQALISAMEQLYSLGALDEEGLLTKLGRKMAEFPLDPPLSKMLLASVDLGCSDEILTIIAMIQTGNIFYRPREKQAQADQKRARFFQPEGDHLTLLAVYESWKNKNFSGPWCFENFVQSRSLRRAQDVRKQLLTIMDKYKLDVVSAGKNFTKIRKAITAGFFFHAARKDPQEGYRTLVENQPVYIHPSSALFQRQPDWVIYHELVMTTKEYMREVTVIDPKWLVELAPRFFKVADPTKMSKRKRQERIEPLYDRYHEPNSWRLSKRRA*