Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1297850 | GAU41594.1 | 89.037 | 675 | 67 | 3 | 1 | 675 | 1 | 668 | 0.0 | 1244 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1297850 | sp|Q43077|AMO_PEA | 83.086 | 674 | 111 | 3 | 1 | 673 | 1 | 672 | 0.0 | 1184 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1297850 | A0A2Z6NA55 | 89.037 | 675 | 67 | 3 | 1 | 675 | 1 | 668 | 0.0 | 1244 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0011040 | Msa1297850 | 0.808065 | 3.719212e-50 | -8.615850e-47 |
Msa0013270 | Msa1297850 | 0.807732 | 4.378527e-50 | -8.615850e-47 |
Msa0024650 | Msa1297850 | 0.803355 | 3.625966e-49 | -8.615850e-47 |
Msa0025570 | Msa1297850 | 0.809176 | 2.153958e-50 | -8.615850e-47 |
Msa0048380 | Msa1297850 | 0.808203 | 3.476021e-50 | -8.615850e-47 |
Msa0062190 | Msa1297850 | 0.809041 | 2.301972e-50 | -8.615850e-47 |
Msa0063540 | Msa1297850 | 0.806991 | 6.286248e-50 | -8.615850e-47 |
Msa0073110 | Msa1297850 | 0.818379 | 2.021307e-52 | -8.615850e-47 |
Msa0087900 | Msa1297850 | 0.811887 | 5.592606e-51 | -8.615850e-47 |
Msa0106540 | Msa1297850 | 0.817791 | 2.744979e-52 | -8.615850e-47 |
Msa0120450 | Msa1297850 | 0.805774 | 1.135020e-49 | -8.615850e-47 |
Msa0604190 | Msa1297850 | 0.805567 | 1.254476e-49 | -8.615850e-47 |
Msa0616300 | Msa1297850 | 0.845357 | 4.271960e-59 | -8.615850e-47 |
Msa0629720 | Msa1297850 | 0.802200 | 6.278885e-49 | -8.615850e-47 |
Msa0643230 | Msa1297850 | 0.803707 | 3.065356e-49 | -8.615850e-47 |
Msa0655370 | Msa1297850 | 0.803186 | 3.931927e-49 | -8.615850e-47 |
Msa0655800 | Msa1297850 | 0.825509 | 4.509361e-54 | -8.615850e-47 |
Msa0667600 | Msa1297850 | 0.803393 | 3.560865e-49 | -8.615850e-47 |
Msa0682110 | Msa1297850 | 0.804388 | 2.213141e-49 | -8.615850e-47 |
Msa0682160 | Msa1297850 | 0.817485 | 3.218150e-52 | -8.615850e-47 |
Msa0694320 | Msa1297850 | 0.803538 | 3.324123e-49 | -8.615850e-47 |
Msa0699170 | Msa1297850 | 0.805282 | 1.439432e-49 | -8.615850e-47 |
Msa0715220 | Msa1297850 | 0.805738 | 1.154943e-49 | -8.615850e-47 |
Msa0733560 | Msa1297850 | 0.831739 | 1.407442e-55 | -8.615850e-47 |
Msa0774660 | Msa1297850 | 0.804947 | 1.691354e-49 | -8.615850e-47 |
Msa0802600 | Msa1297850 | 0.818152 | 2.274789e-52 | -8.615850e-47 |
Msa0812220 | Msa1297850 | 0.820455 | 6.799300e-53 | -8.615850e-47 |
Msa0814230 | Msa1297850 | 0.802403 | 5.702853e-49 | -8.615850e-47 |
Msa0163690 | Msa1297850 | 0.812010 | 5.257413e-51 | -8.615850e-47 |
Msa0209060 | Msa1297850 | 0.817466 | 3.249772e-52 | -8.615850e-47 |
Msa0220090 | Msa1297850 | 0.800891 | 1.164925e-48 | -8.615850e-47 |
Msa1233620 | Msa1297850 | 0.801068 | 1.071936e-48 | -8.615850e-47 |
Msa1256990 | Msa1297850 | 0.923141 | 3.924806e-89 | -8.615850e-47 |
Msa1263110 | Msa1297850 | 0.812802 | 3.530241e-51 | -8.615850e-47 |
Msa1297850 | Msa1368420 | 0.830571 | 2.724994e-55 | -8.615850e-47 |
Msa1297850 | Msa1383220 | 0.828931 | 6.830874e-55 | -8.615850e-47 |
Msa1297850 | Msa1405830 | 0.817196 | 3.738909e-52 | -8.615850e-47 |
Msa1297850 | Msa1407810 | 0.807520 | 4.856008e-50 | -8.615850e-47 |
Msa1297850 | Msa1431160 | 0.809711 | 1.653480e-50 | -8.615850e-47 |
Msa1297850 | Msa1437780 | 0.809015 | 2.331251e-50 | -8.615850e-47 |
Msa1297850 | Msa1445900 | 0.802628 | 5.127382e-49 | -8.615850e-47 |
Msa0366510 | Msa1297850 | 0.801330 | 9.473646e-49 | -8.615850e-47 |
Msa0369990 | Msa1297850 | 0.805187 | 1.506939e-49 | -8.615850e-47 |
Msa0386910 | Msa1297850 | 0.833647 | 4.728527e-56 | -8.615850e-47 |
Msa0401500 | Msa1297850 | 0.808142 | 3.582051e-50 | -8.615850e-47 |
Msa0414480 | Msa1297850 | 0.800558 | 1.362230e-48 | -8.615850e-47 |
Msa0987640 | Msa1297850 | 0.842080 | 3.217640e-58 | -8.615850e-47 |
Msa1006030 | Msa1297850 | 0.808625 | 2.824962e-50 | -8.615850e-47 |
Msa1029820 | Msa1297850 | 0.806308 | 8.763551e-50 | -8.615850e-47 |
Msa1029860 | Msa1297850 | 0.831727 | 1.416711e-55 | -8.615850e-47 |
Msa1049400 | Msa1297850 | 0.801377 | 9.267088e-49 | -8.615850e-47 |
Msa1062060 | Msa1297850 | 0.801408 | 9.134303e-49 | -8.615850e-47 |
Msa1068730 | Msa1297850 | 0.812640 | 3.830557e-51 | -8.615850e-47 |
Msa1071230 | Msa1297850 | 0.811954 | 5.406626e-51 | -8.615850e-47 |
Msa1075030 | Msa1297850 | 0.810668 | 1.027955e-50 | -8.615850e-47 |
Msa1103450 | Msa1297850 | 0.801106 | 1.052922e-48 | -8.615850e-47 |
Msa1106030 | Msa1297850 | 0.818643 | 1.761068e-52 | -8.615850e-47 |
Msa0242830 | Msa1297850 | 0.810351 | 1.203600e-50 | -8.615850e-47 |
Msa0253450 | Msa1297850 | 0.800903 | 1.158225e-48 | -8.615850e-47 |
Msa0287630 | Msa1297850 | 0.827813 | 1.271376e-54 | -8.615850e-47 |
Msa0288540 | Msa1297850 | 0.822216 | 2.666804e-53 | -8.615850e-47 |
Msa0299030 | Msa1297850 | 0.803534 | 3.329918e-49 | -8.615850e-47 |
Msa0319220 | Msa1297850 | 0.804604 | 1.994705e-49 | -8.615850e-47 |
Msa0326770 | Msa1297850 | 0.834225 | 3.388911e-56 | -8.615850e-47 |
Msa0354600 | Msa1297850 | 0.817294 | 3.552657e-52 | -8.615850e-47 |
Msa1107520 | Msa1297850 | 0.800492 | 1.405361e-48 | -8.615850e-47 |
Msa1108560 | Msa1297850 | 0.825063 | 5.750075e-54 | -8.615850e-47 |
Msa1120960 | Msa1297850 | 0.806360 | 8.541936e-50 | -8.615850e-47 |
Msa1147010 | Msa1297850 | 0.808151 | 3.565750e-50 | -8.615850e-47 |
Msa1149270 | Msa1297850 | 0.807382 | 5.194267e-50 | -8.615850e-47 |
Msa1160540 | Msa1297850 | 0.814189 | 1.748447e-51 | -8.615850e-47 |
Msa1167960 | Msa1297850 | 0.801040 | 1.086378e-48 | -8.615850e-47 |
Msa1181090 | Msa1297850 | 0.811275 | 7.597068e-51 | -8.615850e-47 |
Msa1183870 | Msa1297850 | 0.809815 | 1.570021e-50 | -8.615850e-47 |
Msa1205770 | Msa1297850 | 0.927520 | 1.047646e-91 | -8.615850e-47 |
Msa1205810 | Msa1297850 | 0.931763 | 2.333368e-94 | -8.615850e-47 |
Msa1217890 | Msa1297850 | 0.819285 | 1.258784e-52 | -8.615850e-47 |
Msa1223990 | Msa1297850 | 0.812137 | 4.933080e-51 | -8.615850e-47 |
Msa0510870 | Msa1297850 | 0.801516 | 8.679156e-49 | -8.615850e-47 |
Msa0523720 | Msa1297850 | 0.834843 | 2.371386e-56 | -8.615850e-47 |
Msa0539630 | Msa1297850 | 0.817052 | 4.027227e-52 | -8.615850e-47 |
Msa0549170 | Msa1297850 | 0.802971 | 4.355477e-49 | -8.615850e-47 |
Msa0561830 | Msa1297850 | 0.803489 | 3.402106e-49 | -8.615850e-47 |
Msa0567330 | Msa1297850 | 0.807294 | 5.423172e-50 | -8.615850e-47 |
Msa0567570 | Msa1297850 | 0.805203 | 1.495100e-49 | -8.615850e-47 |
Msa0576320 | Msa1297850 | 0.803450 | 3.466837e-49 | -8.615850e-47 |
Msa0589460 | Msa1297850 | 0.808283 | 3.341791e-50 | -8.615850e-47 |
Msa0873880 | Msa1297850 | 0.816644 | 4.972589e-52 | -8.615850e-47 |
Msa0873940 | Msa1297850 | 0.800214 | 1.600407e-48 | -8.615850e-47 |
Msa0891070 | Msa1297850 | 0.806255 | 8.988727e-50 | -8.615850e-47 |
Msa0896920 | Msa1297850 | 0.802745 | 4.848127e-49 | -8.615850e-47 |
Msa0898970 | Msa1297850 | 0.809912 | 1.496294e-50 | -8.615850e-47 |
Msa0906680 | Msa1297850 | 0.805322 | 1.411543e-49 | -8.615850e-47 |
Msa0913550 | Msa1297850 | 0.824443 | 8.050801e-54 | -8.615850e-47 |
Msa0918580 | Msa1297850 | 0.803578 | 3.261153e-49 | -8.615850e-47 |
Msa0946010 | Msa1297850 | 0.810206 | 1.293356e-50 | -8.615850e-47 |
Msa0946310 | Msa1297850 | 0.805073 | 1.591733e-49 | -8.615850e-47 |
Msa0951150 | Msa1297850 | 0.833857 | 4.190661e-56 | -8.615850e-47 |
Msa0967780 | Msa1297850 | 0.803955 | 2.722676e-49 | -8.615850e-47 |
Msa0975950 | Msa1297850 | 0.804789 | 1.824843e-49 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1297850 | MtrunA17_Chr4g0065981 | 85.141 | 673 | 99 | 1 | 3 | 675 | 4 | 675 | 0.0 | 1215 |
Msa1297850 | MtrunA17_Chr4g0065961 | 80.539 | 668 | 128 | 2 | 6 | 673 | 1 | 666 | 0.0 | 1130 |
Msa1297850 | MtrunA17_Chr4g0065991 | 86.417 | 508 | 69 | 0 | 168 | 675 | 1 | 508 | 0.0 | 940 |
Msa1297850 | MtrunA17_Chr1g0205571 | 56.994 | 672 | 284 | 3 | 6 | 673 | 1 | 671 | 0.0 | 819 |
Msa1297850 | MtrunA17_Chr4g0023331 | 87.105 | 411 | 53 | 0 | 265 | 675 | 5 | 415 | 0.0 | 764 |
Msa1297850 | MtrunA17_Chr1g0205541 | 47.432 | 662 | 332 | 5 | 2 | 660 | 10 | 658 | 0.0 | 653 |
Msa1297850 | MtrunA17_Chr3g0119641 | 44.930 | 641 | 339 | 10 | 31 | 661 | 77 | 713 | 0.0 | 579 |
Msa1297850 | MtrunA17_Chr4g0023321 | 70.943 | 265 | 73 | 4 | 1 | 264 | 1 | 262 | 9.03e-128 | 378 |
Msa1297850 | MtrunA17_Chr3g0117081 | 26.973 | 697 | 438 | 19 | 17 | 660 | 58 | 736 | 3.57e-75 | 256 |
Msa1297850 | MtrunA17_Chr5g0412801 | 28.093 | 687 | 414 | 23 | 32 | 660 | 44 | 708 | 1.24e-72 | 249 |
Msa1297850 | MtrunA17_Chr8g0368011 | 27.255 | 499 | 295 | 17 | 32 | 481 | 82 | 561 | 8.21e-47 | 176 |
Msa1297850 | MtrunA17_Chr8g0368021 | 37.795 | 127 | 77 | 2 | 544 | 668 | 37 | 163 | 3.81e-21 | 91.7 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1297850 | AT1G31710.1 | 52.535 | 651 | 300 | 7 | 31 | 673 | 27 | 676 | 0.0 | 710 |
Msa1297850 | AT1G31690.1 | 52.705 | 647 | 300 | 6 | 32 | 673 | 27 | 672 | 0.0 | 709 |
Msa1297850 | AT1G31670.1 | 50.300 | 666 | 304 | 10 | 17 | 673 | 89 | 736 | 0.0 | 670 |
Msa1297850 | AT4G14940.1 | 46.248 | 653 | 336 | 6 | 14 | 660 | 6 | 649 | 0.0 | 629 |
Msa1297850 | AT4G12290.1 | 44.065 | 674 | 339 | 16 | 23 | 673 | 76 | 734 | 0.0 | 584 |
Msa1297850 | AT1G62810.1 | 42.638 | 652 | 361 | 10 | 31 | 673 | 59 | 706 | 0.0 | 556 |
Msa1297850 | AT3G43670.1 | 43.192 | 639 | 350 | 10 | 31 | 660 | 40 | 674 | 0.0 | 554 |
Msa1297850 | AT4G12290.2 | 42.599 | 608 | 317 | 14 | 23 | 610 | 76 | 671 | 2.15e-170 | 503 |
Msa1297850 | AT4G12280.1 | 49.135 | 289 | 139 | 2 | 393 | 673 | 5 | 293 | 7.13e-99 | 305 |
Msa1297850 | AT4G12270.1 | 37.056 | 394 | 211 | 13 | 23 | 390 | 78 | 460 | 5.73e-78 | 256 |
Msa1297850 | AT2G42490.1 | 27.074 | 687 | 439 | 21 | 23 | 660 | 70 | 743 | 8.10e-72 | 248 |
Find 157 sgRNAs with CRISPR-Local
Find 254 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ATGAGATAGTAATTGATTTA+AGG | 0.166639 | 8_3:+58427110 | Msa1297850:CDS |
TTCAGGTATACTGGAAATTA+AGG | 0.179273 | 8_3:+58429938 | Msa1297850:CDS |
GAATACTCTTCTTTGGTTAA+AGG | 0.191305 | 8_3:-58426905 | None:intergenic |
TTCTTTGATGTTGGCGAGTA+TGG | 0.207924 | 8_3:+58428636 | Msa1297850:CDS |
AGTGCTTAATATTGGCATTA+TGG | 0.226913 | 8_3:-58430642 | None:intergenic |
CGGATGAGAACACAGAATTT+AGG | 0.259079 | 8_3:+58427473 | Msa1297850:CDS |
GTTCAAAGAGAAAGAGTTAT+TGG | 0.263546 | 8_3:+58430141 | Msa1297850:CDS |
GACAAGAGAATACTCTTCTT+TGG | 0.277511 | 8_3:-58426912 | None:intergenic |
TGTGACCCAAACATTATAAT+TGG | 0.295340 | 8_3:-58430360 | None:intergenic |
TATCTTGACCTTGATATTGA+TGG | 0.312207 | 8_3:+58430062 | Msa1297850:CDS |
ACAATTGTAATTCCAGTAAT+AGG | 0.316826 | 8_3:-58427388 | None:intergenic |
GTGGCAAGACTGTGTTGTTT+AGG | 0.333387 | 8_3:-58427523 | None:intergenic |
GGATGAGAACACAGAATTTA+GGG | 0.335102 | 8_3:+58427474 | Msa1297850:CDS |
AGGAGTCTTACGAATTCATT+AGG | 0.337269 | 8_3:-58428831 | None:intergenic |
AGATCAATGGCCACAGTGTT+AGG | 0.341442 | 8_3:+58427572 | Msa1297850:CDS |
AGTTTGTTCTACTTTCACTA+TGG | 0.342223 | 8_3:+58427282 | Msa1297850:CDS |
GTGCTTAATATTGGCATTAT+GGG | 0.347461 | 8_3:-58430641 | None:intergenic |
ATATATGTTAGGCCTATTAC+TGG | 0.351947 | 8_3:+58427376 | Msa1297850:CDS |
CTTGTAAGAAGGGGAGGGTC+AGG | 0.359204 | 8_3:-58426838 | None:intergenic |
GAATGGTTTCCCAACGCTTT+CGG | 0.361204 | 8_3:+58427168 | Msa1297850:CDS |
GAGAAGATACTTTAGCTGTT+TGG | 0.371659 | 8_3:+58430438 | Msa1297850:CDS |
ATGGATTTAGCTGGGCAAAT+TGG | 0.375010 | 8_3:+58428451 | Msa1297850:intron |
AATAGGCCTAACATATATAT+TGG | 0.375065 | 8_3:-58427371 | None:intergenic |
TCAAAAGCAGTGCTTAATAT+TGG | 0.375787 | 8_3:-58430650 | None:intergenic |
TATACATACCGCAGGTTTGA+TGG | 0.383102 | 8_3:-58429193 | None:intergenic |
TGGCAAGACTGTGTTGTTTA+GGG | 0.384366 | 8_3:-58427522 | None:intergenic |
CCCAGAGATGTTACATGGCC+TGG | 0.384705 | 8_3:+58430725 | Msa1297850:CDS |
AGTATACAGATAGCACTTTC+AGG | 0.386964 | 8_3:+58429921 | Msa1297850:intron |
AAAAGCTACTTTGTTCTTTG+AGG | 0.389952 | 8_3:-58426963 | None:intergenic |
ATAACATTCTTCAAGAGAAT+CGG | 0.396180 | 8_3:-58428753 | None:intergenic |
ACCAGGCCATGTAACATCTC+TGG | 0.401042 | 8_3:-58430726 | None:intergenic |
GATAGCACTTTCAGGTATAC+TGG | 0.401908 | 8_3:+58429929 | Msa1297850:intron |
ATTTGTGCATGACTGTTGTT+TGG | 0.402615 | 8_3:-58426934 | None:intergenic |
AGTGGATGAGATGGAATTGC+TGG | 0.403828 | 8_3:-58430296 | None:intergenic |
GAATGTATGTATCAATGAAC+TGG | 0.407738 | 8_3:-58428713 | None:intergenic |
GATGTTGGCGAGTATGGATT+TGG | 0.411471 | 8_3:+58428642 | Msa1297850:CDS |
ATTCCCTTTGTGAATATTGT+CGG | 0.414089 | 8_3:-58427149 | None:intergenic |
GGAGAAAGTGTCTTAAGAAC+TGG | 0.414331 | 8_3:-58430704 | None:intergenic |
TAACATTCTTCAAGAGAATC+GGG | 0.421086 | 8_3:-58428752 | None:intergenic |
TTCACTATCGCAAGTTCACC+TGG | 0.422431 | 8_3:-58430224 | None:intergenic |
TAAGCACAAGGATGAGGTTA+AGG | 0.426190 | 8_3:+58429971 | Msa1297850:CDS |
CGAGGGATTGTTATAACACT+TGG | 0.427479 | 8_3:-58427046 | None:intergenic |
GTTCATCAACCGAAAGCGTT+GGG | 0.430526 | 8_3:-58427177 | None:intergenic |
TAACACTGTGGCCATTGATC+TGG | 0.431893 | 8_3:-58427570 | None:intergenic |
AGCTGGAGTGATATTATCAT+TGG | 0.439852 | 8_3:+58428500 | Msa1297850:CDS |
ATGGGAAAATCTTCTTGTGC+TGG | 0.444846 | 8_3:-58430623 | None:intergenic |
CCGAAGTAAACTTGATAGTA+AGG | 0.446212 | 8_3:+58429109 | Msa1297850:CDS |
CTATGACAACGTTGTAGATT+GGG | 0.446410 | 8_3:+58429152 | Msa1297850:CDS |
GATTGTTATAACACTTGGTT+CGG | 0.448572 | 8_3:-58427041 | None:intergenic |
ACTATGACAACGTTGTAGAT+TGG | 0.450809 | 8_3:+58429151 | Msa1297850:CDS |
TCAGGTATACTGGAAATTAA+GGG | 0.452813 | 8_3:+58429939 | Msa1297850:CDS |
GTTTGTTCTACTTTCACTAT+GGG | 0.453362 | 8_3:+58427283 | Msa1297850:CDS |
AGCTACTTTGTTCTTTGAGG+TGG | 0.453700 | 8_3:-58426960 | None:intergenic |
TTTAAGACTTTCTTTGATGT+TGG | 0.457245 | 8_3:+58428627 | Msa1297850:CDS |
ATGTGGCGTCACACTGAAAC+CGG | 0.458552 | 8_3:+58428804 | Msa1297850:CDS |
AAAACTCGTCTGATGGATCT+TGG | 0.459489 | 8_3:-58428602 | None:intergenic |
TGTTGTTTGTTTATTGCATG+TGG | 0.464169 | 8_3:+58430849 | Msa1297850:three_prime_UTR |
GTAAAAGCACCACGTATTTG+TGG | 0.470697 | 8_3:-58430338 | None:intergenic |
TGGCCATTGATCTGGAAGCC+TGG | 0.471032 | 8_3:-58427562 | None:intergenic |
TTCCTCTCGAAGAAATTAGT+TGG | 0.487717 | 8_3:-58430680 | None:intergenic |
GACAATATTCACAAAGGGAA+TGG | 0.489761 | 8_3:+58427151 | Msa1297850:CDS |
GCGGGTGTTGAAAATGCAAT+GGG | 0.496765 | 8_3:-58426877 | None:intergenic |
TCAATGAACTGGGCATTTGA+TGG | 0.497827 | 8_3:-58428702 | None:intergenic |
ACTTTCACTATGGGATGGTA+TGG | 0.498654 | 8_3:+58427292 | Msa1297850:CDS |
TGTTTGTACCATCAATATCA+AGG | 0.502446 | 8_3:-58430070 | None:intergenic |
GTTGTTTGTTTATTGCATGT+GGG | 0.506445 | 8_3:+58430850 | Msa1297850:three_prime_UTR |
GCTACTTTGTTCTTTGAGGT+GGG | 0.507842 | 8_3:-58426959 | None:intergenic |
TTAAATCAATTACTATCTCA+TGG | 0.508058 | 8_3:-58427108 | None:intergenic |
TTAAAGTAAAACTCGTCTGA+TGG | 0.510422 | 8_3:-58428609 | None:intergenic |
ATGGAATTGCTGGGATCAAA+CGG | 0.516903 | 8_3:-58430286 | None:intergenic |
GTTCTACTTTCACTATGGGA+TGG | 0.517842 | 8_3:+58427287 | Msa1297850:CDS |
ACACTGCCAATATATATGTT+AGG | 0.519464 | 8_3:+58427365 | Msa1297850:CDS |
TTTGATGGACAATCACGGTT+GGG | 0.521247 | 8_3:-58428687 | None:intergenic |
AGAAACTACGACTTGTAAGA+AGG | 0.525041 | 8_3:-58426849 | None:intergenic |
ATGGAGAAGAGAAAAGTAGT+AGG | 0.529413 | 8_3:+58427311 | Msa1297850:CDS |
CCTTACTATCAAGTTTACTT+CGG | 0.531083 | 8_3:-58429109 | None:intergenic |
TCGTCTGATGGATCTTGGTA+TGG | 0.531320 | 8_3:-58428597 | None:intergenic |
GGTCCAGGCTTCCAGATCAA+TGG | 0.535158 | 8_3:+58427559 | Msa1297850:CDS |
CAAGATAGTAAATGTATAAG+TGG | 0.535451 | 8_3:-58430046 | None:intergenic |
TCACATCAGAGCCAACCATT+CGG | 0.540930 | 8_3:+58427499 | Msa1297850:CDS |
ATAGGATTTGATGTGCGAGC+TGG | 0.541558 | 8_3:+58428483 | Msa1297850:CDS |
ATCTGGAAGCCTGGACCTTG+AGG | 0.542953 | 8_3:-58427553 | None:intergenic |
TCAGTTAAAAGTGGATGAGA+TGG | 0.543079 | 8_3:-58430305 | None:intergenic |
TAATCATCCTCAGTTAAAAG+TGG | 0.547068 | 8_3:-58430314 | None:intergenic |
CTCGTCGTGTATTATACAAA+GGG | 0.547283 | 8_3:+58428553 | Msa1297850:CDS |
ATCACAATTGGACTTGCCCC+AGG | 0.548427 | 8_3:+58430206 | Msa1297850:CDS |
TCTCCGACAATATTCACAAA+GGG | 0.549833 | 8_3:+58427146 | Msa1297850:CDS |
ACTCATCAACCTCAAGGTCC+AGG | 0.550206 | 8_3:+58427544 | Msa1297850:CDS |
AGTAAATGTATAAGTGGTCG+TGG | 0.551651 | 8_3:-58430040 | None:intergenic |
ATTTGATGGACAATCACGGT+TGG | 0.552322 | 8_3:-58428688 | None:intergenic |
CCAGGCCATGTAACATCTCT+GGG | 0.552849 | 8_3:-58430725 | None:intergenic |
CTCTATGTTGATCATAGCCA+TGG | 0.553409 | 8_3:+58430416 | Msa1297850:CDS |
TGTTCATCAACCGAAAGCGT+TGG | 0.554417 | 8_3:-58427178 | None:intergenic |
GTTGTTTAGGGCCGAATGGT+TGG | 0.554904 | 8_3:-58427510 | None:intergenic |
AGCGGGTGTTGAAAATGCAA+TGG | 0.558186 | 8_3:-58426878 | None:intergenic |
AGTAAGGAGTATAGTTACTG+TGG | 0.558510 | 8_3:+58429125 | Msa1297850:CDS |
GAAACTACGACTTGTAAGAA+GGG | 0.562882 | 8_3:-58426848 | None:intergenic |
TTCATTGATGCAATGAAAGG+AGG | 0.563816 | 8_3:-58427232 | None:intergenic |
CGAGAAAACAAGTTTAAAGA+CGG | 0.565335 | 8_3:+58430100 | Msa1297850:CDS |
AGTTATTGAAGCTGTGCCTA+CGG | 0.569794 | 8_3:+58427453 | Msa1297850:CDS |
AAACATTAAGCACAAGGATG+AGG | 0.570599 | 8_3:+58429965 | Msa1297850:CDS |
CAGCTAAAGTATCTTCTCCA+TGG | 0.571385 | 8_3:-58430433 | None:intergenic |
TTTCTCCCAGAGATGTTACA+TGG | 0.571991 | 8_3:+58430720 | Msa1297850:CDS |
CTACGACTTGTAAGAAGGGG+AGG | 0.577079 | 8_3:-58426844 | None:intergenic |
GGAAGATCTACATGGTACCT+TGG | 0.578264 | 8_3:+58429992 | Msa1297850:CDS |
TTGTAAGAAGGGGAGGGTCA+GGG | 0.579097 | 8_3:-58426837 | None:intergenic |
GATTGGGAGTTCAAAACAAG+TGG | 0.579254 | 8_3:+58429168 | Msa1297850:CDS |
ATGAACAAACCGTTGCGGTA+GGG | 0.580671 | 8_3:+58427194 | Msa1297850:CDS |
TCTCGTCGTGTATTATACAA+AGG | 0.581355 | 8_3:+58428552 | Msa1297850:CDS |
TTGGTGTCAGCAAACAGCAT+TGG | 0.581742 | 8_3:+58430011 | Msa1297850:CDS |
GATGAACAAACCGTTGCGGT+AGG | 0.589189 | 8_3:+58427193 | Msa1297850:CDS |
TAATGGAAGCCCTACCGCAA+CGG | 0.589679 | 8_3:-58427203 | None:intergenic |
GGCCAACTAATTTCTTCGAG+AGG | 0.591472 | 8_3:+58430678 | Msa1297850:CDS |
GTTTGTTTATTGCATGTGGG+AGG | 0.591617 | 8_3:+58430853 | Msa1297850:three_prime_UTR |
CTGTGTTGTTTAGGGCCGAA+TGG | 0.594102 | 8_3:-58427514 | None:intergenic |
ACATACATTCACTCTGCTGA+CGG | 0.594247 | 8_3:+58428726 | Msa1297850:CDS |
TTTAGCAGTTTGAGTCTCAG+TGG | 0.599729 | 8_3:-58430165 | None:intergenic |
AAGACGGTAAGAATCACTGA+TGG | 0.608281 | 8_3:+58430116 | Msa1297850:CDS |
CTTGCCACTCATCAACCTCA+AGG | 0.614169 | 8_3:+58427538 | Msa1297850:CDS |
TCACTATCGCAAGTTCACCT+GGG | 0.614278 | 8_3:-58430223 | None:intergenic |
TACGAATTCATTAGGAACGC+CGG | 0.617548 | 8_3:-58428823 | None:intergenic |
CATTAAGCAGTCTAACCTCA+CGG | 0.620479 | 8_3:-58427335 | None:intergenic |
GAATAGAGACATTGTGAACA+AGG | 0.621351 | 8_3:+58430562 | Msa1297850:CDS |
CTTTGGTTAAAGGATCAAGC+GGG | 0.622516 | 8_3:-58426895 | None:intergenic |
GCAAATTGGAAGTTACACAT+AGG | 0.624758 | 8_3:+58428465 | Msa1297850:CDS |
CATTGTGATGTGGCACGTAG+TGG | 0.626360 | 8_3:+58430586 | Msa1297850:CDS |
GTCTCCGACAATATTCACAA+AGG | 0.628735 | 8_3:+58427145 | Msa1297850:CDS |
ATTGATGATAGCAATGACAA+AGG | 0.629492 | 8_3:-58427074 | None:intergenic |
GTAAGGAGTATAGTTACTGT+GGG | 0.630670 | 8_3:+58429126 | Msa1297850:CDS |
AACAATATAACAATATCATG+TGG | 0.638012 | 8_3:+58428787 | Msa1297850:CDS |
GGGCATTTGATGGACAATCA+CGG | 0.638441 | 8_3:-58428692 | None:intergenic |
CACTATCGCAAGTTCACCTG+GGG | 0.641841 | 8_3:-58430222 | None:intergenic |
ACAGCGGTCGGAAACGACGT+CGG | 0.644560 | 8_3:+58430260 | Msa1297850:CDS |
AATTCTGTGTTCTCATCCGT+AGG | 0.646497 | 8_3:-58427469 | None:intergenic |
AAACTACGACTTGTAAGAAG+GGG | 0.651987 | 8_3:-58426847 | None:intergenic |
GGGAACAAACATTAAGCACA+AGG | 0.652766 | 8_3:+58429959 | Msa1297850:CDS |
TCTTTGGTTAAAGGATCAAG+CGG | 0.653437 | 8_3:-58426896 | None:intergenic |
GTGGATGAGATGGAATTGCT+GGG | 0.655196 | 8_3:-58430295 | None:intergenic |
AATGCTGTTTGCTGACACCA+AGG | 0.662444 | 8_3:-58430009 | None:intergenic |
GCAATGACAAAGGCTTTACG+AGG | 0.670561 | 8_3:-58427064 | None:intergenic |
TACGACTTGTAAGAAGGGGA+GGG | 0.672644 | 8_3:-58426843 | None:intergenic |
AGAAAAGTAGTAGGACCGTG+AGG | 0.677701 | 8_3:+58427320 | Msa1297850:CDS |
GAGGTTAAGGAAGATCTACA+TGG | 0.682090 | 8_3:+58429984 | Msa1297850:CDS |
CAATGACAAAGGCTTTACGA+GGG | 0.683483 | 8_3:-58427063 | None:intergenic |
AACATTCTTCAAGAGAATCG+GGG | 0.685411 | 8_3:-58428751 | None:intergenic |
ATTGTGATGTGGCACGTAGT+GGG | 0.689785 | 8_3:+58430587 | Msa1297850:CDS |
GAGAGGATTGAATCTCTCTG+AGG | 0.693702 | 8_3:+58427258 | Msa1297850:CDS |
AAGTGGTTCCATCAAACCTG+CGG | 0.705775 | 8_3:+58429185 | Msa1297850:CDS |
TCTTTCACAAAAGAACAATG+TGG | 0.710266 | 8_3:-58430818 | None:intergenic |
AATGTATGTATCAATGAACT+GGG | 0.711985 | 8_3:-58428712 | None:intergenic |
ACAAGCTATAGAGCTCACAA+TGG | 0.714049 | 8_3:+58426781 | None:intergenic |
AAATGCATTACCTAACACTG+TGG | 0.720465 | 8_3:-58427582 | None:intergenic |
TGAACAAGGACATTGTGATG+TGG | 0.731915 | 8_3:+58430576 | Msa1297850:CDS |
GGTTGATGAACAAACCGTTG+CGG | 0.744903 | 8_3:+58427189 | Msa1297850:CDS |
TGGACCTTGAGGTTGATGAG+TGG | 0.755738 | 8_3:-58427542 | None:intergenic |
GATGATTATCCACAAATACG+TGG | 0.767802 | 8_3:+58430329 | Msa1297850:CDS |
CGGGTGTTGAAAATGCAATG+GGG | 0.795860 | 8_3:-58426876 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | GCATTTATTTATTTATTTTT+TGG | + | chr8_3:58427599-58427618 | Msa1297850:intron | 10.0% |
!! | ACTAGTATTATTATTTATTA+GGG | - | chr8_3:58427766-58427785 | None:intergenic | 10.0% |
!! | TACTAGTATTATTATTTATT+AGG | - | chr8_3:58427767-58427786 | None:intergenic | 10.0% |
!!! | GTTTAAAAATAACTTTAAAA+TGG | + | chr8_3:58428299-58428318 | Msa1297850:intron | 10.0% |
!!! | ATTTAATTTTTTTATTGACT+TGG | + | chr8_3:58428382-58428401 | Msa1297850:intron | 10.0% |
!! | AGCTATTATATATTTATTTA+TGG | + | chr8_3:58428432-58428451 | Msa1297850:intron | 10.0% |
!!! | AACTAAATATTTTTAATTTG+AGG | - | chr8_3:58429474-58429493 | None:intergenic | 10.0% |
!!! | AAATATTTAGTTTCTTTTTT+AGG | + | chr8_3:58429482-58429501 | Msa1297850:intron | 10.0% |
!! | GTTTCAATATTATTATTATA+TGG | + | chr8_3:58429898-58429917 | Msa1297850:intron | 10.0% |
!!! | TAATAATTAATCATACTTTT+TGG | - | chr8_3:58430465-58430484 | None:intergenic | 10.0% |
!! | AAAAAAATGATATTCTCAAA+TGG | + | chr8_3:58427011-58427030 | Msa1297850:CDS | 15.0% |
!! | AAAAAATGATATTCTCAAAT+GGG | + | chr8_3:58427012-58427031 | Msa1297850:CDS | 15.0% |
!!! | ATTTATTTTTTGGATACATT+TGG | + | chr8_3:58427609-58427628 | Msa1297850:intron | 15.0% |
!!! | TAAAAATAACTTTAAAATGG+TGG | + | chr8_3:58428302-58428321 | Msa1297850:intron | 15.0% |
!! | CAATAAAAAAATTAAATCAC+AGG | - | chr8_3:58428379-58428398 | None:intergenic | 15.0% |
!! | AATAATATTCAAACTATAGA+TGG | - | chr8_3:58429238-58429257 | None:intergenic | 15.0% |
!!! | ATTTTAGTTCTTTTCAATTA+TGG | + | chr8_3:58429263-58429282 | Msa1297850:intron | 15.0% |
!!! | CATGATAAATTTATAGTTTT+TGG | - | chr8_3:58429626-58429645 | None:intergenic | 15.0% |
!! | AATATTGAAACATTATCAAT+TGG | - | chr8_3:58429889-58429908 | None:intergenic | 15.0% |
!!! | TTTTACCAATTATAATGTTT+GGG | + | chr8_3:58430355-58430374 | Msa1297850:CDS | 15.0% |
!! | TTATAATAGAACTGAAAAAT+GGG | + | chr8_3:58430385-58430404 | Msa1297850:CDS | 15.0% |
!!! | TAGTTGATTTATTTTTACTT+GGG | - | chr8_3:58430755-58430774 | None:intergenic | 15.0% |
!!! | TAAGAAAAGCGTAAATTTTA+TGG | - | chr8_3:58426816-58426835 | None:intergenic | 20.0% |
!!! | TGAGAATATCATTTTTTTCA+GGG | - | chr8_3:58427009-58427028 | None:intergenic | 20.0% |
!!! | TTGAGAATATCATTTTTTTC+AGG | - | chr8_3:58427010-58427029 | None:intergenic | 20.0% |
!! | TTAAATCAATTACTATCTCA+TGG | - | chr8_3:58427111-58427130 | None:intergenic | 20.0% |
!!! | ATGAGATAGTAATTGATTTA+AGG | + | chr8_3:58427110-58427129 | Msa1297850:CDS | 20.0% |
!!! | ATAAATTTTCTATGAAGTGT+TGG | - | chr8_3:58427714-58427733 | None:intergenic | 20.0% |
!! | TTTGTCTAATGAGTAAAAAA+GGG | - | chr8_3:58428066-58428085 | None:intergenic | 20.0% |
!!! | TTTTTTACTCATTAGACAAA+GGG | + | chr8_3:58428066-58428085 | Msa1297850:intron | 20.0% |
!! | TATTTATTTATGGATTTAGC+TGG | + | chr8_3:58428442-58428461 | Msa1297850:intron | 20.0% |
!! | ATTTATTTATGGATTTAGCT+GGG | + | chr8_3:58428443-58428462 | Msa1297850:intron | 20.0% |
!! | AACAATATAACAATATCATG+TGG | + | chr8_3:58428787-58428806 | Msa1297850:CDS | 20.0% |
!! | AATATAATCCCATGTAATTA+AGG | - | chr8_3:58428854-58428873 | None:intergenic | 20.0% |
!! | TGTATAGTTTCAACAAAAAA+TGG | + | chr8_3:58429210-58429229 | Msa1297850:intron | 20.0% |
!!! | AGATTTTCTTTCAATAAAAG+TGG | - | chr8_3:58429602-58429621 | None:intergenic | 20.0% |
!! | TTACTCCATTATATTAAAGT+GGG | - | chr8_3:58429710-58429729 | None:intergenic | 20.0% |
!!! | CTTTTACCAATTATAATGTT+TGG | + | chr8_3:58430354-58430373 | Msa1297850:CDS | 20.0% |
!!! | CATTTTTCAGTTCTATTATA+AGG | - | chr8_3:58430386-58430405 | None:intergenic | 20.0% |
!! | CTTATAATAGAACTGAAAAA+TGG | + | chr8_3:58430384-58430403 | Msa1297850:CDS | 20.0% |
!!! | AGTTGATTTATTTTTACTTG+GGG | - | chr8_3:58430754-58430773 | None:intergenic | 20.0% |
!!! | CTAGTTGATTTATTTTTACT+TGG | - | chr8_3:58430756-58430775 | None:intergenic | 20.0% |
!! | AAAGTAGCTTTTCACTATAT+TGG | + | chr8_3:58426974-58426993 | Msa1297850:CDS | 25.0% |
!!! | ATGAAAGGAGGATATTTTAA+TGG | - | chr8_3:58427223-58427242 | None:intergenic | 25.0% |
!! | TTTTTCATTGATGCAATGAA+AGG | - | chr8_3:58427238-58427257 | None:intergenic | 25.0% |
! | AATAGGCCTAACATATATAT+TGG | - | chr8_3:58427374-58427393 | None:intergenic | 25.0% |
! | ACAATTGTAATTCCAGTAAT+AGG | - | chr8_3:58427391-58427410 | None:intergenic | 25.0% |
!!! | TATTTTTTGGATACATTTGG+TGG | + | chr8_3:58427612-58427631 | Msa1297850:intron | 25.0% |
!!! | ATTTTTTGGATACATTTGGT+GGG | + | chr8_3:58427613-58427632 | Msa1297850:intron | 25.0% |
! | AATTTAGAAAAATAACACCG+TGG | + | chr8_3:58427652-58427671 | Msa1297850:intron | 25.0% |
!!! | TTTTTATTTGTTGTCAACCA+CGG | - | chr8_3:58427672-58427691 | None:intergenic | 25.0% |
! | CTTTGTCTAATGAGTAAAAA+AGG | - | chr8_3:58428067-58428086 | None:intergenic | 25.0% |
!!! | CTTTTTTACTCATTAGACAA+AGG | + | chr8_3:58428065-58428084 | Msa1297850:intron | 25.0% |
!!! | CTCTATTAGAAGAGTTTTAA+TGG | + | chr8_3:58428207-58428226 | Msa1297850:intron | 25.0% |
!! | TTTTAATGGAGATGAATTAC+AGG | + | chr8_3:58428221-58428240 | Msa1297850:intron | 25.0% |
! | GTTTACATGATATTATCATG+AGG | - | chr8_3:58428263-58428282 | None:intergenic | 25.0% |
!!! | TTTTTTTATTGACTTGGACA+TGG | + | chr8_3:58428388-58428407 | Msa1297850:intron | 25.0% |
!! | TTTAAGACTTTCTTTGATGT+TGG | + | chr8_3:58428627-58428646 | Msa1297850:CDS | 25.0% |
! | AATGTATGTATCAATGAACT+GGG | - | chr8_3:58428715-58428734 | None:intergenic | 25.0% |
! | ATAACATTCTTCAAGAGAAT+CGG | - | chr8_3:58428756-58428775 | None:intergenic | 25.0% |
! | TGTCAATTAATTACAACTGT+TGG | + | chr8_3:58428873-58428892 | Msa1297850:intron | 25.0% |
!!! | TACTAGTATGTTTTTTCTTG+TGG | + | chr8_3:58429288-58429307 | Msa1297850:intron | 25.0% |
!! | TGATGAGATTAACTTTTATG+CGG | + | chr8_3:58429333-58429352 | Msa1297850:intron | 25.0% |
! | AGGTCATTTAAATGCTTAAT+TGG | + | chr8_3:58429660-58429679 | Msa1297850:intron | 25.0% |
! | GTTACTCCATTATATTAAAG+TGG | - | chr8_3:58429711-58429730 | None:intergenic | 25.0% |
!! | CTTTAATATAATGGAGTAAC+TGG | + | chr8_3:58429711-58429730 | Msa1297850:intron | 25.0% |
!! | TTTTAACATCAAAGAGTCTT+TGG | + | chr8_3:58429757-58429776 | Msa1297850:intron | 25.0% |
! | CAAGATAGTAAATGTATAAG+TGG | - | chr8_3:58430049-58430068 | None:intergenic | 25.0% |
!! | GAAAAGCGTAAATTTTATGG+TGG | - | chr8_3:58426813-58426832 | None:intergenic | 30.0% |
GAATACTCTTCTTTGGTTAA+AGG | - | chr8_3:58426908-58426927 | None:intergenic | 30.0% | |
! | AAAAGCTACTTTGTTCTTTG+AGG | - | chr8_3:58426966-58426985 | None:intergenic | 30.0% |
GATTGTTATAACACTTGGTT+CGG | - | chr8_3:58427044-58427063 | None:intergenic | 30.0% | |
! | ATTGATGATAGCAATGACAA+AGG | - | chr8_3:58427077-58427096 | None:intergenic | 30.0% |
ATTCCCTTTGTGAATATTGT+CGG | - | chr8_3:58427152-58427171 | None:intergenic | 30.0% | |
ATTGCATCAATGAAAAAGAG+AGG | + | chr8_3:58427241-58427260 | Msa1297850:CDS | 30.0% | |
! | AGTTTGTTCTACTTTCACTA+TGG | + | chr8_3:58427282-58427301 | Msa1297850:CDS | 30.0% |
GTTTGTTCTACTTTCACTAT+GGG | + | chr8_3:58427283-58427302 | Msa1297850:CDS | 30.0% | |
ACACTGCCAATATATATGTT+AGG | + | chr8_3:58427365-58427384 | Msa1297850:CDS | 30.0% | |
ATATATGTTAGGCCTATTAC+TGG | + | chr8_3:58427376-58427395 | Msa1297850:CDS | 30.0% | |
AAAAGTCAAATTGTACCCAA+AGG | + | chr8_3:58428011-58428030 | Msa1297850:intron | 30.0% | |
TACCCAAAGGATTTAAATGA+AGG | + | chr8_3:58428024-58428043 | Msa1297850:intron | 30.0% | |
ACCCAAAGGATTTAAATGAA+GGG | + | chr8_3:58428025-58428044 | Msa1297850:intron | 30.0% | |
ACCCTTCATTTAAATCCTTT+GGG | - | chr8_3:58428029-58428048 | None:intergenic | 30.0% | |
TTAAAGTAAAACTCGTCTGA+TGG | - | chr8_3:58428612-58428631 | None:intergenic | 30.0% | |
GAATGTATGTATCAATGAAC+TGG | - | chr8_3:58428716-58428735 | None:intergenic | 30.0% | |
TAACATTCTTCAAGAGAATC+GGG | - | chr8_3:58428755-58428774 | None:intergenic | 30.0% | |
GTAAGACTCCTTAATTACAT+GGG | + | chr8_3:58428843-58428862 | Msa1297850:intron | 30.0% | |
CCTTACTATCAAGTTTACTT+CGG | - | chr8_3:58429112-58429131 | None:intergenic | 30.0% | |
! | TTTTCTTGTGGTATGAATGA+TGG | + | chr8_3:58429300-58429319 | Msa1297850:intron | 30.0% |
TTTCTTGTGGTATGAATGAT+GGG | + | chr8_3:58429301-58429320 | Msa1297850:intron | 30.0% | |
!!! | GTATGAATGATGGGTTTTTT+AGG | + | chr8_3:58429310-58429329 | Msa1297850:intron | 30.0% |
TAGCTCCCACTTTAATATAA+TGG | + | chr8_3:58429702-58429721 | Msa1297850:intron | 30.0% | |
AATATAAAGCATGTGTCTCA+CGG | - | chr8_3:58429738-58429757 | None:intergenic | 30.0% | |
ATATTGGGTTACTTATGTCT+TGG | - | chr8_3:58429820-58429839 | None:intergenic | 30.0% | |
AACCACGTGTTAAACATATT+GGG | - | chr8_3:58429835-58429854 | None:intergenic | 30.0% | |
AAACCACGTGTTAAACATAT+TGG | - | chr8_3:58429836-58429855 | None:intergenic | 30.0% | |
TTCAGGTATACTGGAAATTA+AGG | + | chr8_3:58429938-58429957 | Msa1297850:CDS | 30.0% | |
TCAGGTATACTGGAAATTAA+GGG | + | chr8_3:58429939-58429958 | Msa1297850:CDS | 30.0% | |
TATCTTGACCTTGATATTGA+TGG | + | chr8_3:58430062-58430081 | Msa1297850:CDS | 30.0% | |
TGTTTGTACCATCAATATCA+AGG | - | chr8_3:58430073-58430092 | None:intergenic | 30.0% | |
CGAGAAAACAAGTTTAAAGA+CGG | + | chr8_3:58430100-58430119 | Msa1297850:CDS | 30.0% | |
GTTCAAAGAGAAAGAGTTAT+TGG | + | chr8_3:58430141-58430160 | Msa1297850:CDS | 30.0% | |
TCAGATGCAAAAATCACAAT+TGG | + | chr8_3:58430194-58430213 | Msa1297850:CDS | 30.0% | |
GAATCCAAACAAAAAAACAG+CGG | + | chr8_3:58430244-58430263 | Msa1297850:CDS | 30.0% | |
TAATCATCCTCAGTTAAAAG+TGG | - | chr8_3:58430317-58430336 | None:intergenic | 30.0% | |
TGTGACCCAAACATTATAAT+TGG | - | chr8_3:58430363-58430382 | None:intergenic | 30.0% | |
ATTAAAATGTACGTTTGCAC+AGG | + | chr8_3:58430540-58430559 | Msa1297850:intron | 30.0% | |
GTGCTTAATATTGGCATTAT+GGG | - | chr8_3:58430644-58430663 | None:intergenic | 30.0% | |
AGTGCTTAATATTGGCATTA+TGG | - | chr8_3:58430645-58430664 | None:intergenic | 30.0% | |
TCAAAAGCAGTGCTTAATAT+TGG | - | chr8_3:58430653-58430672 | None:intergenic | 30.0% | |
TCTTTCACAAAAGAACAATG+TGG | - | chr8_3:58430821-58430840 | None:intergenic | 30.0% | |
! | TGTTGTTTGTTTATTGCATG+TGG | + | chr8_3:58430849-58430868 | Msa1297850:three_prime_UTR | 30.0% |
GTTGTTTGTTTATTGCATGT+GGG | + | chr8_3:58430850-58430869 | Msa1297850:three_prime_UTR | 30.0% | |
! | AAGCGTAAATTTTATGGTGG+TGG | - | chr8_3:58426810-58426829 | None:intergenic | 35.0% |
AAACTACGACTTGTAAGAAG+GGG | - | chr8_3:58426850-58426869 | None:intergenic | 35.0% | |
GAAACTACGACTTGTAAGAA+GGG | - | chr8_3:58426851-58426870 | None:intergenic | 35.0% | |
AGAAACTACGACTTGTAAGA+AGG | - | chr8_3:58426852-58426871 | None:intergenic | 35.0% | |
TCTTTGGTTAAAGGATCAAG+CGG | - | chr8_3:58426899-58426918 | None:intergenic | 35.0% | |
GACAAGAGAATACTCTTCTT+TGG | - | chr8_3:58426915-58426934 | None:intergenic | 35.0% | |
ATTTGTGCATGACTGTTGTT+TGG | - | chr8_3:58426937-58426956 | None:intergenic | 35.0% | |
TCTCCGACAATATTCACAAA+GGG | + | chr8_3:58427146-58427165 | Msa1297850:CDS | 35.0% | |
GACAATATTCACAAAGGGAA+TGG | + | chr8_3:58427151-58427170 | Msa1297850:CDS | 35.0% | |
TTCATTGATGCAATGAAAGG+AGG | - | chr8_3:58427235-58427254 | None:intergenic | 35.0% | |
ATGGAGAAGAGAAAAGTAGT+AGG | + | chr8_3:58427311-58427330 | Msa1297850:CDS | 35.0% | |
GGATGAGAACACAGAATTTA+GGG | + | chr8_3:58427474-58427493 | Msa1297850:CDS | 35.0% | |
AAATGCATTACCTAACACTG+TGG | - | chr8_3:58427585-58427604 | None:intergenic | 35.0% | |
CACCCTTCATTTAAATCCTT+TGG | - | chr8_3:58428030-58428049 | None:intergenic | 35.0% | |
!! | TTAAAATGGTGGATGTCATC+AGG | + | chr8_3:58428313-58428332 | Msa1297850:intron | 35.0% |
GCAAATTGGAAGTTACACAT+AGG | + | chr8_3:58428465-58428484 | Msa1297850:CDS | 35.0% | |
AGCTGGAGTGATATTATCAT+TGG | + | chr8_3:58428500-58428519 | Msa1297850:CDS | 35.0% | |
TCTCGTCGTGTATTATACAA+AGG | + | chr8_3:58428552-58428571 | Msa1297850:CDS | 35.0% | |
CTCGTCGTGTATTATACAAA+GGG | + | chr8_3:58428553-58428572 | Msa1297850:CDS | 35.0% | |
AACATTCTTCAAGAGAATCG+GGG | - | chr8_3:58428754-58428773 | None:intergenic | 35.0% | |
AGGAGTCTTACGAATTCATT+AGG | - | chr8_3:58428834-58428853 | None:intergenic | 35.0% | |
CGTAAGACTCCTTAATTACA+TGG | + | chr8_3:58428842-58428861 | Msa1297850:intron | 35.0% | |
! | CCGAAGTAAACTTGATAGTA+AGG | + | chr8_3:58429109-58429128 | Msa1297850:CDS | 35.0% |
! | AGTAAGGAGTATAGTTACTG+TGG | + | chr8_3:58429125-58429144 | Msa1297850:CDS | 35.0% |
! | GTAAGGAGTATAGTTACTGT+GGG | + | chr8_3:58429126-58429145 | Msa1297850:CDS | 35.0% |
ACTATGACAACGTTGTAGAT+TGG | + | chr8_3:58429151-58429170 | Msa1297850:CDS | 35.0% | |
CTATGACAACGTTGTAGATT+GGG | + | chr8_3:58429152-58429171 | Msa1297850:CDS | 35.0% | |
CATCATGAACTTAGCTTAGT+TGG | + | chr8_3:58429396-58429415 | Msa1297850:intron | 35.0% | |
AACCCAATATGTTTAACACG+TGG | + | chr8_3:58429830-58429849 | Msa1297850:intron | 35.0% | |
AGTATACAGATAGCACTTTC+AGG | + | chr8_3:58429921-58429940 | Msa1297850:intron | 35.0% | |
AAACATTAAGCACAAGGATG+AGG | + | chr8_3:58429965-58429984 | Msa1297850:CDS | 35.0% | |
AGTAAATGTATAAGTGGTCG+TGG | - | chr8_3:58430043-58430062 | None:intergenic | 35.0% | |
TCAGTTAAAAGTGGATGAGA+TGG | - | chr8_3:58430308-58430327 | None:intergenic | 35.0% | |
!! | ATCTCATCCACTTTTAACTG+AGG | + | chr8_3:58430307-58430326 | Msa1297850:CDS | 35.0% |
GATGATTATCCACAAATACG+TGG | + | chr8_3:58430329-58430348 | Msa1297850:CDS | 35.0% | |
AATAGAACTGAAAAATGGGC+TGG | + | chr8_3:58430389-58430408 | Msa1297850:CDS | 35.0% | |
GAGAAGATACTTTAGCTGTT+TGG | + | chr8_3:58430438-58430457 | Msa1297850:CDS | 35.0% | |
GAATAGAGACATTGTGAACA+AGG | + | chr8_3:58430562-58430581 | Msa1297850:CDS | 35.0% | |
TTCCTCTCGAAGAAATTAGT+TGG | - | chr8_3:58430683-58430702 | None:intergenic | 35.0% | |
CTTTGGTTAAAGGATCAAGC+GGG | - | chr8_3:58426898-58426917 | None:intergenic | 40.0% | |
!! | GCTACTTTGTTCTTTGAGGT+GGG | - | chr8_3:58426962-58426981 | None:intergenic | 40.0% |
! | AGCTACTTTGTTCTTTGAGG+TGG | - | chr8_3:58426963-58426982 | None:intergenic | 40.0% |
CGAGGGATTGTTATAACACT+TGG | - | chr8_3:58427049-58427068 | None:intergenic | 40.0% | |
CAATGACAAAGGCTTTACGA+GGG | - | chr8_3:58427066-58427085 | None:intergenic | 40.0% | |
GTCTCCGACAATATTCACAA+AGG | + | chr8_3:58427145-58427164 | Msa1297850:CDS | 40.0% | |
GTTCTACTTTCACTATGGGA+TGG | + | chr8_3:58427287-58427306 | Msa1297850:CDS | 40.0% | |
ACTTTCACTATGGGATGGTA+TGG | + | chr8_3:58427292-58427311 | Msa1297850:CDS | 40.0% | |
CATTAAGCAGTCTAACCTCA+CGG | - | chr8_3:58427338-58427357 | None:intergenic | 40.0% | |
AGTTATTGAAGCTGTGCCTA+CGG | + | chr8_3:58427453-58427472 | Msa1297850:CDS | 40.0% | |
AATTCTGTGTTCTCATCCGT+AGG | - | chr8_3:58427472-58427491 | None:intergenic | 40.0% | |
CGGATGAGAACACAGAATTT+AGG | + | chr8_3:58427473-58427492 | Msa1297850:CDS | 40.0% | |
!! | TGGCAAGACTGTGTTGTTTA+GGG | - | chr8_3:58427525-58427544 | None:intergenic | 40.0% |
ATGGATTTAGCTGGGCAAAT+TGG | + | chr8_3:58428451-58428470 | Msa1297850:intron | 40.0% | |
! | AAAACTCGTCTGATGGATCT+TGG | - | chr8_3:58428605-58428624 | None:intergenic | 40.0% |
TTCTTTGATGTTGGCGAGTA+TGG | + | chr8_3:58428636-58428655 | Msa1297850:CDS | 40.0% | |
! | TTTGATGGACAATCACGGTT+GGG | - | chr8_3:58428690-58428709 | None:intergenic | 40.0% |
! | ATTTGATGGACAATCACGGT+TGG | - | chr8_3:58428691-58428710 | None:intergenic | 40.0% |
TCAATGAACTGGGCATTTGA+TGG | - | chr8_3:58428705-58428724 | None:intergenic | 40.0% | |
ACATACATTCACTCTGCTGA+CGG | + | chr8_3:58428726-58428745 | Msa1297850:CDS | 40.0% | |
TACGAATTCATTAGGAACGC+CGG | - | chr8_3:58428826-58428845 | None:intergenic | 40.0% | |
GATTGGGAGTTCAAAACAAG+TGG | + | chr8_3:58429168-58429187 | Msa1297850:CDS | 40.0% | |
TATACATACCGCAGGTTTGA+TGG | - | chr8_3:58429196-58429215 | None:intergenic | 40.0% | |
GTTGAAACTATACATACCGC+AGG | - | chr8_3:58429204-58429223 | None:intergenic | 40.0% | |
GTAATCAAAGCACGCTATAG+AGG | + | chr8_3:58429431-58429450 | Msa1297850:intron | 40.0% | |
AGCATTTAAATGACCTGCGT+GGG | - | chr8_3:58429656-58429675 | None:intergenic | 40.0% | |
AAGCATTTAAATGACCTGCG+TGG | - | chr8_3:58429657-58429676 | None:intergenic | 40.0% | |
! | GATAGCACTTTCAGGTATAC+TGG | + | chr8_3:58429929-58429948 | Msa1297850:intron | 40.0% |
GGGAACAAACATTAAGCACA+AGG | + | chr8_3:58429959-58429978 | Msa1297850:CDS | 40.0% | |
TAAGCACAAGGATGAGGTTA+AGG | + | chr8_3:58429971-58429990 | Msa1297850:CDS | 40.0% | |
GAGGTTAAGGAAGATCTACA+TGG | + | chr8_3:58429984-58430003 | Msa1297850:CDS | 40.0% | |
AAGACGGTAAGAATCACTGA+TGG | + | chr8_3:58430116-58430135 | Msa1297850:CDS | 40.0% | |
TTTAGCAGTTTGAGTCTCAG+TGG | - | chr8_3:58430168-58430187 | None:intergenic | 40.0% | |
CCAAACAAAAAAACAGCGGT+CGG | + | chr8_3:58430248-58430267 | Msa1297850:CDS | 40.0% | |
ATGGAATTGCTGGGATCAAA+CGG | - | chr8_3:58430289-58430308 | None:intergenic | 40.0% | |
!! | GTAAAAGCACCACGTATTTG+TGG | - | chr8_3:58430341-58430360 | None:intergenic | 40.0% |
CTCTATGTTGATCATAGCCA+TGG | + | chr8_3:58430416-58430435 | Msa1297850:CDS | 40.0% | |
! | CAGCTAAAGTATCTTCTCCA+TGG | - | chr8_3:58430436-58430455 | None:intergenic | 40.0% |
TGAACAAGGACATTGTGATG+TGG | + | chr8_3:58430576-58430595 | Msa1297850:CDS | 40.0% | |
ATGGGAAAATCTTCTTGTGC+TGG | - | chr8_3:58430626-58430645 | None:intergenic | 40.0% | |
!! | GGAGAAAGTGTCTTAAGAAC+TGG | - | chr8_3:58430707-58430726 | None:intergenic | 40.0% |
TTTCTCCCAGAGATGTTACA+TGG | + | chr8_3:58430720-58430739 | Msa1297850:CDS | 40.0% | |
!! | TATTTTTACTTGGGGCAACC+AGG | - | chr8_3:58430746-58430765 | None:intergenic | 40.0% |
GTTTGTTTATTGCATGTGGG+AGG | + | chr8_3:58430853-58430872 | Msa1297850:three_prime_UTR | 40.0% | |
TACGACTTGTAAGAAGGGGA+GGG | - | chr8_3:58426846-58426865 | None:intergenic | 45.0% | |
!! | CGGGTGTTGAAAATGCAATG+GGG | - | chr8_3:58426879-58426898 | None:intergenic | 45.0% |
!! | GCGGGTGTTGAAAATGCAAT+GGG | - | chr8_3:58426880-58426899 | None:intergenic | 45.0% |
!! | AGCGGGTGTTGAAAATGCAA+TGG | - | chr8_3:58426881-58426900 | None:intergenic | 45.0% |
GCAATGACAAAGGCTTTACG+AGG | - | chr8_3:58427067-58427086 | None:intergenic | 45.0% | |
GAATGGTTTCCCAACGCTTT+CGG | + | chr8_3:58427168-58427187 | Msa1297850:CDS | 45.0% | |
!! | GTTCATCAACCGAAAGCGTT+GGG | - | chr8_3:58427180-58427199 | None:intergenic | 45.0% |
! | TGTTCATCAACCGAAAGCGT+TGG | - | chr8_3:58427181-58427200 | None:intergenic | 45.0% |
!! | GGTTGATGAACAAACCGTTG+CGG | + | chr8_3:58427189-58427208 | Msa1297850:CDS | 45.0% |
ATGAACAAACCGTTGCGGTA+GGG | + | chr8_3:58427194-58427213 | Msa1297850:CDS | 45.0% | |
GAGAGGATTGAATCTCTCTG+AGG | + | chr8_3:58427258-58427277 | Msa1297850:CDS | 45.0% | |
AGAAAAGTAGTAGGACCGTG+AGG | + | chr8_3:58427320-58427339 | Msa1297850:CDS | 45.0% | |
TCACATCAGAGCCAACCATT+CGG | + | chr8_3:58427499-58427518 | Msa1297850:CDS | 45.0% | |
!! | GTGGCAAGACTGTGTTGTTT+AGG | - | chr8_3:58427526-58427545 | None:intergenic | 45.0% |
TAACACTGTGGCCATTGATC+TGG | - | chr8_3:58427573-58427592 | None:intergenic | 45.0% | |
AGATCAATGGCCACAGTGTT+AGG | + | chr8_3:58427572-58427591 | Msa1297850:CDS | 45.0% | |
ATAGGATTTGATGTGCGAGC+TGG | + | chr8_3:58428483-58428502 | Msa1297850:CDS | 45.0% | |
! | TCGTCTGATGGATCTTGGTA+TGG | - | chr8_3:58428600-58428619 | None:intergenic | 45.0% |
GATGTTGGCGAGTATGGATT+TGG | + | chr8_3:58428642-58428661 | Msa1297850:CDS | 45.0% | |
! | GGGCATTTGATGGACAATCA+CGG | - | chr8_3:58428695-58428714 | None:intergenic | 45.0% |
AAGTGGTTCCATCAAACCTG+CGG | + | chr8_3:58429185-58429204 | Msa1297850:CDS | 45.0% | |
TTTAAATGACCTGCGTGGGT+GGG | - | chr8_3:58429652-58429671 | None:intergenic | 45.0% | |
ATTTAAATGACCTGCGTGGG+TGG | - | chr8_3:58429653-58429672 | None:intergenic | 45.0% | |
GGAAGATCTACATGGTACCT+TGG | + | chr8_3:58429992-58430011 | Msa1297850:CDS | 45.0% | |
! | AATGCTGTTTGCTGACACCA+AGG | - | chr8_3:58430012-58430031 | None:intergenic | 45.0% |
!! | TTGGTGTCAGCAAACAGCAT+TGG | + | chr8_3:58430011-58430030 | Msa1297850:CDS | 45.0% |
TCACTATCGCAAGTTCACCT+GGG | - | chr8_3:58430226-58430245 | None:intergenic | 45.0% | |
TTCACTATCGCAAGTTCACC+TGG | - | chr8_3:58430227-58430246 | None:intergenic | 45.0% | |
!!! | CCGACCGCTGTTTTTTTGTT+TGG | - | chr8_3:58430251-58430270 | None:intergenic | 45.0% |
GTGGATGAGATGGAATTGCT+GGG | - | chr8_3:58430298-58430317 | None:intergenic | 45.0% | |
AGTGGATGAGATGGAATTGC+TGG | - | chr8_3:58430299-58430318 | None:intergenic | 45.0% | |
!! | AGAACTGAAAAATGGGCTGG+TGG | + | chr8_3:58430392-58430411 | Msa1297850:CDS | 45.0% |
ATTGTGATGTGGCACGTAGT+GGG | + | chr8_3:58430587-58430606 | Msa1297850:CDS | 45.0% | |
!! | TAAGCACTGCTTTTGAGCTG+AGG | + | chr8_3:58430657-58430676 | Msa1297850:CDS | 45.0% |
GGCCAACTAATTTCTTCGAG+AGG | + | chr8_3:58430678-58430697 | Msa1297850:CDS | 45.0% | |
TTGTAAGAAGGGGAGGGTCA+GGG | - | chr8_3:58426840-58426859 | None:intergenic | 50.0% | |
CTACGACTTGTAAGAAGGGG+AGG | - | chr8_3:58426847-58426866 | None:intergenic | 50.0% | |
GATGAACAAACCGTTGCGGT+AGG | + | chr8_3:58427193-58427212 | Msa1297850:CDS | 50.0% | |
TAATGGAAGCCCTACCGCAA+CGG | - | chr8_3:58427206-58427225 | None:intergenic | 50.0% | |
! | GTTGTTTAGGGCCGAATGGT+TGG | - | chr8_3:58427513-58427532 | None:intergenic | 50.0% |
!! | CTGTGTTGTTTAGGGCCGAA+TGG | - | chr8_3:58427517-58427536 | None:intergenic | 50.0% |
CTTGCCACTCATCAACCTCA+AGG | + | chr8_3:58427538-58427557 | Msa1297850:CDS | 50.0% | |
!! | TGGACCTTGAGGTTGATGAG+TGG | - | chr8_3:58427545-58427564 | None:intergenic | 50.0% |
ACTCATCAACCTCAAGGTCC+AGG | + | chr8_3:58427544-58427563 | Msa1297850:CDS | 50.0% | |
ATGTGGCGTCACACTGAAAC+CGG | + | chr8_3:58428804-58428823 | Msa1297850:CDS | 50.0% | |
TTAAATGACCTGCGTGGGTG+GGG | - | chr8_3:58429651-58429670 | None:intergenic | 50.0% | |
ATCACAATTGGACTTGCCCC+AGG | + | chr8_3:58430206-58430225 | Msa1297850:CDS | 50.0% | |
CACTATCGCAAGTTCACCTG+GGG | - | chr8_3:58430225-58430244 | None:intergenic | 50.0% | |
CATTGTGATGTGGCACGTAG+TGG | + | chr8_3:58430586-58430605 | Msa1297850:CDS | 50.0% | |
CCAGGCCATGTAACATCTCT+GGG | - | chr8_3:58430728-58430747 | None:intergenic | 50.0% | |
ACCAGGCCATGTAACATCTC+TGG | - | chr8_3:58430729-58430748 | None:intergenic | 50.0% | |
CTTGTAAGAAGGGGAGGGTC+AGG | - | chr8_3:58426841-58426860 | None:intergenic | 55.0% | |
ATCTGGAAGCCTGGACCTTG+AGG | - | chr8_3:58427556-58427575 | None:intergenic | 55.0% | |
GGTCCAGGCTTCCAGATCAA+TGG | + | chr8_3:58427559-58427578 | Msa1297850:CDS | 55.0% | |
TGGCCATTGATCTGGAAGCC+TGG | - | chr8_3:58427565-58427584 | None:intergenic | 55.0% | |
CCCAGAGATGTTACATGGCC+TGG | + | chr8_3:58430725-58430744 | Msa1297850:CDS | 55.0% | |
ATCATGTACCCCACCCACGC+AGG | + | chr8_3:58429640-58429659 | Msa1297850:intron | 60.0% | |
ACAGCGGTCGGAAACGACGT+CGG | + | chr8_3:58430260-58430279 | Msa1297850:CDS | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8_3 | gene | 58426784 | 58430906 | 58426784 | ID=Msa1297850;Name=Msa1297850 |
chr8_3 | mRNA | 58426784 | 58430906 | 58426784 | ID=Msa1297850-mRNA-1;Parent=Msa1297850;Name=Msa1297850-mRNA-1;_AED=0.05;_eAED=0.05;_QI=16|1|1|1|1|1|5|146|675 |
chr8_3 | exon | 58426784 | 58427593 | 58426784 | ID=Msa1297850-mRNA-1:exon:16754;Parent=Msa1297850-mRNA-1 |
chr8_3 | exon | 58428461 | 58428842 | 58428461 | ID=Msa1297850-mRNA-1:exon:16755;Parent=Msa1297850-mRNA-1 |
chr8_3 | exon | 58429093 | 58429206 | 58429093 | ID=Msa1297850-mRNA-1:exon:16756;Parent=Msa1297850-mRNA-1 |
chr8_3 | exon | 58429930 | 58430468 | 58429930 | ID=Msa1297850-mRNA-1:exon:16757;Parent=Msa1297850-mRNA-1 |
chr8_3 | exon | 58430562 | 58430906 | 58430562 | ID=Msa1297850-mRNA-1:exon:16758;Parent=Msa1297850-mRNA-1 |
chr8_3 | five_prime_UTR | 58426784 | 58426799 | 58426784 | ID=Msa1297850-mRNA-1:five_prime_utr;Parent=Msa1297850-mRNA-1 |
chr8_3 | CDS | 58426800 | 58427593 | 58426800 | ID=Msa1297850-mRNA-1:cds;Parent=Msa1297850-mRNA-1 |
chr8_3 | CDS | 58428461 | 58428842 | 58428461 | ID=Msa1297850-mRNA-1:cds;Parent=Msa1297850-mRNA-1 |
chr8_3 | CDS | 58429093 | 58429206 | 58429093 | ID=Msa1297850-mRNA-1:cds;Parent=Msa1297850-mRNA-1 |
chr8_3 | CDS | 58429930 | 58430468 | 58429930 | ID=Msa1297850-mRNA-1:cds;Parent=Msa1297850-mRNA-1 |
chr8_3 | CDS | 58430562 | 58430760 | 58430562 | ID=Msa1297850-mRNA-1:cds;Parent=Msa1297850-mRNA-1 |
chr8_3 | three_prime_UTR | 58430761 | 58430906 | 58430761 | ID=Msa1297850-mRNA-1:three_prime_utr;Parent=Msa1297850-mRNA-1 |
Gene Sequence |
Protein sequence |