AlfalfaGEDB | Msa0773540

M. sativa cultivar zhongmu-4 / Msa0773540

KEGG: K14510
GO: GO:0001666 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004712 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006082 GO:0006464 GO:0006468 GO:0006629 GO:0006720 GO:0006721 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009628 GO:0009685 GO:0009686 GO:0009719 GO:0009723 GO:0009725 GO:0009743 GO:0009744 GO:0009746 GO:0009750 GO:0009756 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0010104 GO:0010105 GO:0010182 GO:0010646 GO:0010648 GO:0010817 GO:0012505 GO:0016020 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019752 GO:0023051 GO:0023052 GO:0023057 GO:0031984 GO:0034284 GO:0034285 GO:0036211 GO:0036293 GO:0040034 GO:0042175 GO:0042221 GO:0042445 GO:0042446 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046777 GO:0048506 GO:0048509 GO:0048510 GO:0048519 GO:0048523 GO:0048580 GO:0048583 GO:0048585 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051302 GO:0051716 GO:0065007 GO:0065008 GO:0070297 GO:0070298 GO:0070482 GO:0070887 GO:0071241 GO:0071248 GO:0071281 GO:0071310 GO:0071322 GO:0071704 GO:0098827 GO:0140096 GO:1901564 GO:1901576 GO:1901700 GO:1901701 GO:1902531 GO:1902532 GO:2000026 GO:2000035 GO:2000069 GO:2000280
PFAM: PF07714.20

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0773540	sp\|Q05609\|CTR1_ARATH	56.180	89	16	1	2	67	542	630	4.56e-23	94.7

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0773540	A0A2Z6PMH7	98.507	67	1	0	1	67	646	712	5.53e-37	141

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0011170	Msa0773540	0.801561	8.497102e-49	-8.615850e-47
Msa0044260	Msa0773540	0.818442	1.956492e-52	-8.615850e-47
Msa0116770	Msa0773540	0.801130	1.040886e-48	-8.615850e-47
Msa0632730	Msa0773540	0.814750	1.314267e-51	-8.615850e-47
Msa0638930	Msa0773540	-0.820136	8.044040e-53	-8.615850e-47
Msa0663810	Msa0773540	0.803840	2.876382e-49	-8.615850e-47
Msa0679750	Msa0773540	0.826618	2.458099e-54	-8.615850e-47
Msa0680100	Msa0773540	0.806582	7.669407e-50	-8.615850e-47
Msa0681250	Msa0773540	0.800055	1.724877e-48	-8.615850e-47
Msa0685750	Msa0773540	0.800238	1.583120e-48	-8.615850e-47
Msa0697030	Msa0773540	0.821161	4.676931e-53	-8.615850e-47
Msa0701010	Msa0773540	0.802151	6.428253e-49	-8.615850e-47
Msa0732640	Msa0773540	0.805629	1.217107e-49	-8.615850e-47
Msa0732650	Msa0773540	0.808480	3.033344e-50	-8.615850e-47
Msa0735660	Msa0773540	0.815164	1.063504e-51	-8.615850e-47
Msa0753720	Msa0773540	0.854223	1.420570e-61	-8.615850e-47
Msa0755050	Msa0773540	0.802448	5.584220e-49	-8.615850e-47
Msa0760130	Msa0773540	0.826257	2.996197e-54	-8.615850e-47
Msa0762360	Msa0773540	0.805724	1.162470e-49	-8.615850e-47
Msa0766630	Msa0773540	0.814281	1.668778e-51	-8.615850e-47
Msa0773540	Msa0773550	0.837108	6.313312e-57	-8.615850e-47
Msa0773540	Msa0820840	0.813624	2.329937e-51	-8.615850e-47
Msa0773540	Msa0832340	0.808347	3.238402e-50	-8.615850e-47
Msa0773540	Msa0857220	0.809337	1.988699e-50	-8.615850e-47
Msa0773540	Msa0861120	0.809216	2.111864e-50	-8.615850e-47
Msa0773540	Msa0866450	0.801714	7.905284e-49	-8.615850e-47
Msa0773540	Msa0877250	0.815932	7.175683e-52	-8.615850e-47
Msa0773540	Msa0892080	0.824059	9.907663e-54	-8.615850e-47
Msa0773540	Msa0899450	0.802829	4.658137e-49	-8.615850e-47
Msa0773540	Msa0899980	0.804866	1.758992e-49	-8.615850e-47
Msa0773540	Msa0927380	0.812738	3.644919e-51	-8.615850e-47
Msa0773540	Msa0958550	0.805177	1.513822e-49	-8.615850e-47
Msa0773540	Msa0964900	0.816656	4.942112e-52	-8.615850e-47
Msa0773540	Msa0965360	0.808047	3.752083e-50	-8.615850e-47
Msa0773540	Msa0967580	0.823329	1.468389e-53	-8.615850e-47
Msa0773540	Msa0999120	0.812777	3.574563e-51	-8.615850e-47
Msa0773540	Msa1003620	0.819306	1.244518e-52	-8.615850e-47
Msa0773540	Msa1014540	0.809688	1.671996e-50	-8.615850e-47
Msa0773540	Msa1030970	0.818996	1.463899e-52	-8.615850e-47
Msa0773540	Msa1046460	0.801911	7.202615e-49	-8.615850e-47
Msa0773540	Msa1075540	0.807591	4.689996e-50	-8.615850e-47
Msa0773540	Msa1083840	0.825838	3.767738e-54	-8.615850e-47
Msa0773540	Msa1121480	0.814502	1.491461e-51	-8.615850e-47
Msa0773540	Msa1121490	0.835379	1.736226e-56	-8.615850e-47
Msa0773540	Msa1148980	0.802782	4.765363e-49	-8.615850e-47
Msa0773540	Msa1174910	0.805419	1.347044e-49	-8.615850e-47
Msa0773540	Msa1179770	0.800127	1.667014e-48	-8.615850e-47
Msa0773540	Msa1192990	0.802053	6.734353e-49	-8.615850e-47
Msa0773540	Msa1239720	0.844733	6.297336e-59	-8.615850e-47
Msa0773540	Msa1249490	0.801738	7.815116e-49	-8.615850e-47
Msa0773540	Msa1276890	0.827441	1.562195e-54	-8.615850e-47
Msa0773540	Msa1284680	0.822811	1.940116e-53	-8.615850e-47
Msa0773540	Msa1307070	0.818971	1.483543e-52	-8.615850e-47
Msa0773540	Msa1316200	0.827736	1.326571e-54	-8.615850e-47
Msa0773540	Msa1331000	0.804944	1.694008e-49	-8.615850e-47
Msa0773540	Msa1388930	0.813465	2.525416e-51	-8.615850e-47
Msa0773540	Msa1466540	0.803215	3.877572e-49	-8.615850e-47
Msa0165210	Msa0773540	0.818630	1.773065e-52	-8.615850e-47
Msa0188460	Msa0773540	0.800141	1.656076e-48	-8.615850e-47
Msa0212990	Msa0773540	0.811892	5.577408e-51	-8.615850e-47
Msa0371730	Msa0773540	0.806303	8.781049e-50	-8.615850e-47
Msa0393080	Msa0773540	0.803772	2.971415e-49	-8.615850e-47
Msa0424320	Msa0773540	0.806808	6.872745e-50	-8.615850e-47
Msa0435230	Msa0773540	0.804280	2.330675e-49	-8.615850e-47
Msa0452710	Msa0773540	0.820118	8.121980e-53	-8.615850e-47
Msa0453640	Msa0773540	0.802795	4.735893e-49	-8.615850e-47
Msa0466120	Msa0773540	0.808975	2.378176e-50	-8.615850e-47
Msa0479340	Msa0773540	0.824290	8.743591e-54	-8.615850e-47
Msa0285450	Msa0773540	0.840949	6.388288e-58	-8.615850e-47
Msa0313560	Msa0773540	0.814602	1.417428e-51	-8.615850e-47
Msa0330340	Msa0773540	0.817539	3.130048e-52	-8.615850e-47
Msa0363530	Msa0773540	0.804011	2.651425e-49	-8.615850e-47
Msa0512750	Msa0773540	0.800523	1.384723e-48	-8.615850e-47
Msa0542480	Msa0773540	0.814267	1.680827e-51	-8.615850e-47
Msa0545210	Msa0773540	0.821798	3.334062e-53	-8.615850e-47
Msa0564390	Msa0773540	0.820013	8.582696e-53	-8.615850e-47
Msa0600710	Msa0773540	0.827117	1.867715e-54	-8.615850e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0773540	MtrunA17_Chr5g0427651	73.333	90	1	1	1	67	636	725	2.64e-36	129
Msa0773540	MtrunA17_Chr3g0132791	64.444	90	9	1	1	67	643	732	2.46e-30	112
Msa0773540	MtrunA17_Chr8g0392871	44.037	109	32	2	5	90	733	835	2.54e-23	92.0
Msa0773540	MtrunA17_Chr1g0179331	52.222	90	20	1	1	67	545	634	8.26e-22	87.8
Msa0773540	MtrunA17_Chr1g0191171	48.837	86	21	1	5	67	683	768	4.08e-20	83.2
Msa0773540	MtrunA17_Chr6g0482711	44.037	109	32	2	5	90	654	756	1.12e-19	81.6
Msa0773540	MtrunA17_Chr7g0240231	100.000	33	0	0	1	33	1	33	6.85e-19	74.7
Msa0773540	MtrunA17_Chr1g0171451	49.425	87	21	1	4	67	407	493	1.29e-18	78.6
Msa0773540	MtrunA17_Chr1g0151541	45.349	86	24	1	5	67	657	742	3.35e-18	77.4
Msa0773540	MtrunA17_Chr4g0068411	45.349	86	24	1	5	67	454	539	8.43e-16	70.9
Msa0773540	MtrunA17_Chr2g0294351	46.512	86	23	1	5	67	460	545	1.14e-15	70.5
Msa0773540	MtrunA17_Chr5g0411591	90.625	32	3	0	1	32	1	32	3.85e-15	65.5
Msa0773540	MtrunA17_Chr5g0397931	38.372	86	30	1	5	67	417	502	1.40e-12	61.6
Msa0773540	MtrunA17_Chr4g0041201	37.349	83	29	1	6	65	542	624	2.20e-12	60.8
Msa0773540	MtrunA17_Chr2g0325851	37.349	83	29	1	6	65	552	634	2.58e-12	60.8

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0773540	AT4G24480.2	64.045	89	9	1	2	67	660	748	6.08e-31	114
Msa0773540	AT4G24480.3	64.045	89	9	1	2	67	660	748	6.83e-31	114
Msa0773540	AT4G24480.1	60.638	94	9	1	2	67	660	753	2.96e-30	112
Msa0773540	AT5G03730.2	56.180	89	16	1	2	67	542	630	4.64e-24	94.7
Msa0773540	AT5G03730.1	56.180	89	16	1	2	67	542	630	4.64e-24	94.7
Msa0773540	AT1G73660.1	44.954	109	31	2	5	90	742	844	6.94e-22	88.6
Msa0773540	AT1G08720.2	44.037	109	32	2	5	90	663	765	7.68e-22	88.2
Msa0773540	AT1G08720.1	44.037	109	32	2	5	90	663	765	7.69e-22	88.2
Msa0773540	AT1G18160.1	43.119	109	33	2	5	90	709	811	3.32e-21	86.7
Msa0773540	AT1G18160.2	43.119	109	33	2	5	90	709	811	3.80e-21	86.3
Msa0773540	AT5G11850.1	48.837	86	21	1	5	67	603	688	6.49e-20	82.8
Msa0773540	AT5G49470.5	46.512	86	23	1	5	67	485	570	7.89e-17	73.9
Msa0773540	AT5G49470.6	46.512	86	23	1	5	67	485	570	7.89e-17	73.9
Msa0773540	AT5G49470.7	46.512	86	23	1	5	67	358	443	9.83e-17	73.9
Msa0773540	AT5G49470.3	46.512	86	23	1	5	67	485	570	1.04e-16	73.6
Msa0773540	AT3G06630.6	45.349	86	24	1	5	67	344	429	2.87e-16	72.4
Msa0773540	AT1G67890.1	45.349	86	24	1	5	67	481	566	3.04e-16	72.4
Msa0773540	AT1G67890.3	45.349	86	24	1	5	67	481	566	3.45e-16	72.4
Msa0773540	AT1G67890.2	45.349	86	24	1	5	67	481	566	3.45e-16	72.4
Msa0773540	AT5G49470.2	46.512	86	23	1	5	67	482	567	2.29e-15	70.1
Msa0773540	AT5G49470.4	46.512	86	23	1	5	67	459	544	2.56e-15	69.7
Msa0773540	AT5G49470.1	46.512	86	23	1	5	67	198	283	3.55e-15	69.3
Msa0773540	AT3G06630.7	45.349	86	24	1	5	67	428	513	6.04e-15	68.6
Msa0773540	AT3G06630.4	45.349	86	24	1	5	67	428	513	6.86e-15	68.6
Msa0773540	AT3G06630.3	45.349	86	24	1	5	67	428	513	6.86e-15	68.6
Msa0773540	AT3G06630.5	45.349	86	24	1	5	67	428	513	6.86e-15	68.6
Msa0773540	AT3G06630.2	45.349	86	24	1	5	67	428	513	7.10e-15	68.6
Msa0773540	AT3G06630.1	45.349	86	24	1	5	67	428	513	7.16e-15	68.6
Msa0773540	AT3G06620.1	45.349	86	24	1	5	67	488	573	7.65e-15	68.6
Msa0773540	AT3G06640.1	45.349	86	24	1	5	67	440	525	1.21e-14	67.8
Msa0773540	AT3G06640.2	45.349	86	24	1	5	67	440	525	1.22e-14	67.8
Msa0773540	AT3G06640.3	45.349	86	24	1	5	67	440	525	1.22e-14	67.8
Msa0773540	AT1G67890.4	45.349	86	24	1	5	67	353	438	1.33e-14	67.8
Msa0773540	AT4G23050.1	38.372	86	30	1	5	67	461	546	1.38e-13	64.7
Msa0773540	AT4G23050.2	38.372	86	30	1	5	67	462	547	1.38e-13	64.7
Msa0773540	AT2G31010.1	38.095	84	29	1	5	65	513	596	5.62e-13	63.2
Msa0773540	AT2G31010.2	38.095	84	29	1	5	65	513	596	5.62e-13	63.2
Msa0773540	AT3G58640.1	36.145	83	30	1	6	65	548	630	3.39e-12	60.8
Msa0773540	AT3G58640.2	36.145	83	30	1	6	65	548	630	3.39e-12	60.8

Find 49 sgRNAs with CRISPR-Local

Find 249 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
GGTTCAAGATTCACATATTT+TGG	0.083444	5_2:-48535616	None:intergenic
TTTCGGGCTGTCCAGATTTA+AGG	0.200762	5_2:+48537131	Msa0773540:CDS
TATGCTCAGGTGTGTGATTT+CGG	0.232608	5_2:+48537114	Msa0773540:intron
TCTCATTGTAAGAAATTTCT+TGG	0.257410	5_2:-48535501	None:intergenic
ATGCTCAGGTGTGTGATTTC+GGG	0.266639	5_2:+48537115	Msa0773540:intron
TTTATTTATGCAGGATCATT+TGG	0.282685	5_2:+48535782	Msa0773540:intron
GAAAGTATTTGCCTTAAATC+TGG	0.315219	5_2:-48537142	None:intergenic
TTGTCCTCAAAATCTGTTGC+TGG	0.333411	5_2:+48537165	Msa0773540:CDS
TGTAATAATGCTTCAGAGGC+TGG	0.356384	5_2:-48535442	None:intergenic
CTACTTGTTCCTGCTTTGAC+TGG	0.365162	5_2:-48535558	None:intergenic
AAGGGAAGTTCAGTGGTAAA+TGG	0.375926	5_2:+48535532	Msa0773540:five_prime_UTR
TCCAAATGTGGTGCTCTTCA+TGG	0.376916	5_2:+48536594	Msa0773540:CDS
CCCATGAAGAGCACCACATT+TGG	0.410475	5_2:-48536595	None:intergenic
GCTTCAGTTGATAAAACTCC+TGG	0.412970	5_2:+48535304	Msa0773540:five_prime_UTR
TTATTTATGCAGGATCATTT+GGG	0.416542	5_2:+48535783	Msa0773540:intron
TTACATGACATTCCGTTTGT+TGG	0.428198	5_2:+48535460	Msa0773540:five_prime_UTR
CTCAAAATCTGTTGCTGGAA+CGG	0.434544	5_2:+48537170	Msa0773540:CDS
TGGACTGGCTTGAGATATCA+TGG	0.445535	5_2:+48535650	Msa0773540:CDS
CGACTTCATAACCAGGGTGC+TGG	0.445882	5_2:+48535586	Msa0773540:five_prime_UTR
GACTTCATAACCAGGGTGCT+GGG	0.477831	5_2:+48535587	Msa0773540:five_prime_UTR
TACAATGAGATCATTGCAAA+GGG	0.494339	5_2:+48535514	Msa0773540:five_prime_UTR
ACTGAATCTTTACCAACAAA+CGG	0.496994	5_2:-48535472	None:intergenic
ATCAAAGAACGCATTGGTGC+TGG	0.498755	5_2:+48535685	Msa0773540:CDS
CCAAATGTGGTGCTCTTCAT+GGG	0.530102	5_2:+48536595	Msa0773540:CDS
GTAATAATGCTTCAGAGGCT+GGG	0.531732	5_2:-48535441	None:intergenic
TTACAATGAGATCATTGCAA+AGG	0.535482	5_2:+48535513	Msa0773540:five_prime_UTR
AGCCAGTCCATTGCTAGTGA+TGG	0.551807	5_2:-48535637	None:intergenic
AAATGGTATCCAGTCAAAGC+AGG	0.553596	5_2:+48535549	Msa0773540:five_prime_UTR
TCTTGAACCATCACTAGCAA+TGG	0.564083	5_2:+48535630	Msa0773540:exon
AACCATCACTAGCAATGGAC+TGG	0.566572	5_2:+48535635	Msa0773540:exon
GGACAGTGTACCGTGCTGAA+TGG	0.576758	5_2:+48535804	Msa0773540:CDS
GTCATGTAATAATGCTTCAG+AGG	0.593398	5_2:-48535446	None:intergenic
CTGCGGATCAAAGAACGCAT+TGG	0.597029	5_2:+48535679	Msa0773540:CDS
AGAAAATCGACTTCATAACC+AGG	0.610279	5_2:+48535579	Msa0773540:five_prime_UTR
TGAAGAGCACCACATTTGGA+TGG	0.617370	5_2:-48536591	None:intergenic
TAGTGACAGAGTATTTGCCC+AGG	0.619832	5_2:+48536647	Msa0773540:CDS
TGTGGTGCTCTTCATGGGTG+CGG	0.620498	5_2:+48536600	Msa0773540:CDS
CTGATCCATGCCATTCAGCA+CGG	0.630160	5_2:-48535814	None:intergenic
CATTGCAAAGGGAAGTTCAG+TGG	0.632388	5_2:+48535525	Msa0773540:five_prime_UTR
AGATATCATGGGATGAGCTG+CGG	0.633760	5_2:+48535662	Msa0773540:CDS
TTGGAATATCCCCAGCACCC+TGG	0.634335	5_2:-48535597	None:intergenic
ACTTCATAACCAGGGTGCTG+GGG	0.638614	5_2:+48535588	Msa0773540:five_prime_UTR
GTGTACCGTGCTGAATGGCA+TGG	0.657179	5_2:+48535809	Msa0773540:CDS
GAAAATCGACTTCATAACCA+GGG	0.668500	5_2:+48535580	Msa0773540:five_prime_UTR
ACTTGTCCGCCATCCAAATG+TGG	0.684843	5_2:+48536582	Msa0773540:CDS
TCTGTCACTATAGATAGATG+AGG	0.694310	5_2:-48536634	None:intergenic
GGACTGGCTTGAGATATCAT+GGG	0.699073	5_2:+48535651	Msa0773540:CDS
TCAGTTGATAAAACTCCTGG+AGG	0.706730	5_2:+48535307	Msa0773540:five_prime_UTR
AGAGCACCACATTTGGATGG+CGG	0.707353	5_2:-48536588	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!!	AAATATTTTAAAAAAAATTA+AGG	-	chr5_2:48537065-48537084	None:intergenic	0.0%
!!!	AAATATTTTAAAAAAAATTA+AGG	-	chr5_2:48537065-48537084	None:intergenic	0.0%
!!!	AATACATTTTTTTCTTTTTT+TGG	+	chr5_2:48536015-48536034	Msa0773540:intron	10.0%
!!!	AATACATTTTTTTCTTTTTT+TGG	+	chr5_2:48536015-48536034	Msa0773540:intron	10.0%
!!	AAAAAACTTAAAACTAATGA+AGG	+	chr5_2:48535990-48536009	Msa0773540:intron	15.0%
!!	ACATTTGTTTAATCAATATT+AGG	-	chr5_2:48536280-48536299	None:intergenic	15.0%
!!	GTAATATCTATTTATTGTAT+AGG	+	chr5_2:48536308-48536327	Msa0773540:intron	15.0%
!!!	AAATTTGTTGTATTTAGAAA+AGG	-	chr5_2:48536436-48536455	None:intergenic	15.0%
!!	AAAAAACTTAAAACTAATGA+AGG	+	chr5_2:48535990-48536009	Msa0773540:intron	15.0%
!!	ACATTTGTTTAATCAATATT+AGG	-	chr5_2:48536280-48536299	None:intergenic	15.0%
!!	GTAATATCTATTTATTGTAT+AGG	+	chr5_2:48536308-48536327	Msa0773540:intron	15.0%
!!!	AAATTTGTTGTATTTAGAAA+AGG	-	chr5_2:48536436-48536455	None:intergenic	15.0%
!!!	ATTGTTATTTTTGAGCAAAT+CGG	-	chr5_2:48535272-48535291	None:intergenic	20.0%
!!!	ACATTTTTTTCTTTTTTTGG+TGG	+	chr5_2:48536018-48536037	Msa0773540:intron	20.0%
!!	TGTATTTAATTGCATGAATA+AGG	+	chr5_2:48536090-48536109	Msa0773540:intron	20.0%
!!!	ATTGTTATTTTTGAGCAAAT+CGG	-	chr5_2:48535272-48535291	None:intergenic	20.0%
!!!	ACATTTTTTTCTTTTTTTGG+TGG	+	chr5_2:48536018-48536037	Msa0773540:intron	20.0%
!!	TGTATTTAATTGCATGAATA+AGG	+	chr5_2:48536090-48536109	Msa0773540:intron	20.0%
!	TCTCATTGTAAGAAATTTCT+TGG	-	chr5_2:48535504-48535523	None:intergenic	25.0%
!	TTTATTTATGCAGGATCATT+TGG	+	chr5_2:48535782-48535801	Msa0773540:intron	25.0%
!	TTATTTATGCAGGATCATTT+GGG	+	chr5_2:48535783-48535802	Msa0773540:intron	25.0%
!!!	TTTTTTTCTTTTTTTGGTGG+TGG	+	chr5_2:48536021-48536040	Msa0773540:intron	25.0%
!	TACAATGCATAATATATGCA+AGG	-	chr5_2:48536066-48536085	None:intergenic	25.0%
!	AATAAAATATCAAGTCGTCA+TGG	-	chr5_2:48536124-48536143	None:intergenic	25.0%
!!!	CTTCTCTGTTTTTATCATTT+TGG	+	chr5_2:48536147-48536166	Msa0773540:intron	25.0%
!!!	ATCAGATGTTTTAAAATTGC+AGG	+	chr5_2:48536177-48536196	Msa0773540:intron	25.0%
!!!	TCTTTATTTTGACTTCTATG+AGG	+	chr5_2:48536509-48536528	Msa0773540:intron	25.0%
!	GATATTACTTATATTGCTTC+AGG	+	chr5_2:48536546-48536565	Msa0773540:intron	25.0%
!	ATTTAGTTAACTACCAAAGA+AGG	-	chr5_2:48536680-48536699	None:intergenic	25.0%
!	AGACAAAAATTGGAATGTAA+AGG	+	chr5_2:48537007-48537026	Msa0773540:intron	25.0%
!!	TTTTTCTCAAATTTATGCTC+AGG	+	chr5_2:48537101-48537120	Msa0773540:intron	25.0%
!	TCTCATTGTAAGAAATTTCT+TGG	-	chr5_2:48535504-48535523	None:intergenic	25.0%
!	TTTATTTATGCAGGATCATT+TGG	+	chr5_2:48535782-48535801	Msa0773540:intron	25.0%
!	TTATTTATGCAGGATCATTT+GGG	+	chr5_2:48535783-48535802	Msa0773540:intron	25.0%
!!!	TTTTTTTCTTTTTTTGGTGG+TGG	+	chr5_2:48536021-48536040	Msa0773540:intron	25.0%
!	TACAATGCATAATATATGCA+AGG	-	chr5_2:48536066-48536085	None:intergenic	25.0%
!	AATAAAATATCAAGTCGTCA+TGG	-	chr5_2:48536124-48536143	None:intergenic	25.0%
!!!	CTTCTCTGTTTTTATCATTT+TGG	+	chr5_2:48536147-48536166	Msa0773540:intron	25.0%
!!!	ATCAGATGTTTTAAAATTGC+AGG	+	chr5_2:48536177-48536196	Msa0773540:intron	25.0%
!!!	TCTTTATTTTGACTTCTATG+AGG	+	chr5_2:48536509-48536528	Msa0773540:intron	25.0%
!	GATATTACTTATATTGCTTC+AGG	+	chr5_2:48536546-48536565	Msa0773540:intron	25.0%
!	ATTTAGTTAACTACCAAAGA+AGG	-	chr5_2:48536680-48536699	None:intergenic	25.0%
!	AGACAAAAATTGGAATGTAA+AGG	+	chr5_2:48537007-48537026	Msa0773540:intron	25.0%
!!	TTTTTCTCAAATTTATGCTC+AGG	+	chr5_2:48537101-48537120	Msa0773540:intron	25.0%
!	ATTTTTCCTTCTACTTGTGA+AGG	+	chr5_2:48535400-48535419	Msa0773540:intron	30.0%
	ACTGAATCTTTACCAACAAA+CGG	-	chr5_2:48535475-48535494	None:intergenic	30.0%
	TTACAATGAGATCATTGCAA+AGG	+	chr5_2:48535513-48535532	Msa0773540:five_prime_UTR	30.0%
	TACAATGAGATCATTGCAAA+GGG	+	chr5_2:48535514-48535533	Msa0773540:five_prime_UTR	30.0%
!	GGTTCAAGATTCACATATTT+TGG	-	chr5_2:48535619-48535638	None:intergenic	30.0%
!!	TACTGCTCTTTTATTTATGC+AGG	+	chr5_2:48535773-48535792	Msa0773540:intron	30.0%
	GAGTTAGTTATGCTTTGTAT+TGG	+	chr5_2:48535905-48535924	Msa0773540:intron	30.0%
	TCTGAGTTATGCTTCAATTA+AGG	+	chr5_2:48536332-48536351	Msa0773540:intron	30.0%
	CTGAGTTATGCTTCAATTAA+GGG	+	chr5_2:48536333-48536352	Msa0773540:intron	30.0%
	TCAATTAAGGGTTGTATTTC+TGG	+	chr5_2:48536345-48536364	Msa0773540:intron	30.0%
	TCAGATCCTAATACTTACAA+TGG	-	chr5_2:48536375-48536394	None:intergenic	30.0%
	ATTGTAAGTATTAGGATCTG+AGG	+	chr5_2:48536374-48536393	Msa0773540:intron	30.0%
!	ATATCGTTTTCTCTCATTGT+AGG	+	chr5_2:48536908-48536927	Msa0773540:intron	30.0%
!!	GAAAGTATTTGCCTTAAATC+TGG	-	chr5_2:48537145-48537164	None:intergenic	30.0%
!	ATTTTTCCTTCTACTTGTGA+AGG	+	chr5_2:48535400-48535419	Msa0773540:intron	30.0%
	ACTGAATCTTTACCAACAAA+CGG	-	chr5_2:48535475-48535494	None:intergenic	30.0%
	TTACAATGAGATCATTGCAA+AGG	+	chr5_2:48535513-48535532	Msa0773540:five_prime_UTR	30.0%
	TACAATGAGATCATTGCAAA+GGG	+	chr5_2:48535514-48535533	Msa0773540:five_prime_UTR	30.0%
!	GGTTCAAGATTCACATATTT+TGG	-	chr5_2:48535619-48535638	None:intergenic	30.0%
!!	TACTGCTCTTTTATTTATGC+AGG	+	chr5_2:48535773-48535792	Msa0773540:intron	30.0%
	GAGTTAGTTATGCTTTGTAT+TGG	+	chr5_2:48535905-48535924	Msa0773540:intron	30.0%
	TCTGAGTTATGCTTCAATTA+AGG	+	chr5_2:48536332-48536351	Msa0773540:intron	30.0%
	CTGAGTTATGCTTCAATTAA+GGG	+	chr5_2:48536333-48536352	Msa0773540:intron	30.0%
	TCAATTAAGGGTTGTATTTC+TGG	+	chr5_2:48536345-48536364	Msa0773540:intron	30.0%
	TCAGATCCTAATACTTACAA+TGG	-	chr5_2:48536375-48536394	None:intergenic	30.0%
	ATTGTAAGTATTAGGATCTG+AGG	+	chr5_2:48536374-48536393	Msa0773540:intron	30.0%
!	ATATCGTTTTCTCTCATTGT+AGG	+	chr5_2:48536908-48536927	Msa0773540:intron	30.0%
!!	GAAAGTATTTGCCTTAAATC+TGG	-	chr5_2:48537145-48537164	None:intergenic	30.0%
!	GTTGCTACTCAATCTTTTAC+AGG	+	chr5_2:48535214-48535233	Msa0773540:five_prime_UTR	35.0%
	TTCAAGCCAAAAGGAATTAC+AGG	-	chr5_2:48535343-48535362	None:intergenic	35.0%
!!!	GTAATTCCTTTTGGCTTGAA+AGG	+	chr5_2:48535343-48535362	Msa0773540:intron	35.0%
	GTCATGTAATAATGCTTCAG+AGG	-	chr5_2:48535449-48535468	None:intergenic	35.0%
	TTACATGACATTCCGTTTGT+TGG	+	chr5_2:48535460-48535479	Msa0773540:five_prime_UTR	35.0%
!	AGAAAATCGACTTCATAACC+AGG	+	chr5_2:48535579-48535598	Msa0773540:five_prime_UTR	35.0%
!	GAAAATCGACTTCATAACCA+GGG	+	chr5_2:48535580-48535599	Msa0773540:five_prime_UTR	35.0%
!!	TCTCATGCTTTGAGTTTTGA+AGG	+	chr5_2:48535721-48535740	Msa0773540:intron	35.0%
!	TTTTCATGACGATCAGTTGA+AGG	+	chr5_2:48536231-48536250	Msa0773540:intron	35.0%
!	GTTGAAGGAGTTTTTACGAT+AGG	+	chr5_2:48536246-48536265	Msa0773540:intron	35.0%
	GATTAAACAAATGTTACGCG+AGG	+	chr5_2:48536286-48536305	Msa0773540:intron	35.0%
	TCTGTCACTATAGATAGATG+AGG	-	chr5_2:48536637-48536656	None:intergenic	35.0%
!!	AGTGTCTTACTGTTGTTTCT+TGG	+	chr5_2:48536731-48536750	Msa0773540:intron	35.0%
	TTTCTCTCATTGTAGGCTAA+AGG	+	chr5_2:48536915-48536934	Msa0773540:intron	35.0%
	TTCTCTCATTGTAGGCTAAA+GGG	+	chr5_2:48536916-48536935	Msa0773540:intron	35.0%
!	TTTTTGTCTACTCACAGGTT+TGG	-	chr5_2:48536996-48537015	None:intergenic	35.0%
	ACCTGTGAGTAGACAAAAAT+TGG	+	chr5_2:48536997-48537016	Msa0773540:intron	35.0%
!	TCCAATTTTTGTCTACTCAC+AGG	-	chr5_2:48537001-48537020	None:intergenic	35.0%
	AAGACCAACTTCAAAATCTG+AGG	-	chr5_2:48535193-48535212	None:intergenic	35.0%
!	GTTGCTACTCAATCTTTTAC+AGG	+	chr5_2:48535214-48535233	Msa0773540:five_prime_UTR	35.0%
	TTCAAGCCAAAAGGAATTAC+AGG	-	chr5_2:48535343-48535362	None:intergenic	35.0%
!!!	GTAATTCCTTTTGGCTTGAA+AGG	+	chr5_2:48535343-48535362	Msa0773540:intron	35.0%
	GTCATGTAATAATGCTTCAG+AGG	-	chr5_2:48535449-48535468	None:intergenic	35.0%
	TTACATGACATTCCGTTTGT+TGG	+	chr5_2:48535460-48535479	Msa0773540:five_prime_UTR	35.0%
!	AGAAAATCGACTTCATAACC+AGG	+	chr5_2:48535579-48535598	Msa0773540:five_prime_UTR	35.0%
!	GAAAATCGACTTCATAACCA+GGG	+	chr5_2:48535580-48535599	Msa0773540:five_prime_UTR	35.0%
!!	TCTCATGCTTTGAGTTTTGA+AGG	+	chr5_2:48535721-48535740	Msa0773540:intron	35.0%
!	TTTTCATGACGATCAGTTGA+AGG	+	chr5_2:48536231-48536250	Msa0773540:intron	35.0%
!	GTTGAAGGAGTTTTTACGAT+AGG	+	chr5_2:48536246-48536265	Msa0773540:intron	35.0%
	GATTAAACAAATGTTACGCG+AGG	+	chr5_2:48536286-48536305	Msa0773540:intron	35.0%
	TCTGTCACTATAGATAGATG+AGG	-	chr5_2:48536637-48536656	None:intergenic	35.0%
!!	AGTGTCTTACTGTTGTTTCT+TGG	+	chr5_2:48536731-48536750	Msa0773540:intron	35.0%
	TTTCTCTCATTGTAGGCTAA+AGG	+	chr5_2:48536915-48536934	Msa0773540:intron	35.0%
	TTCTCTCATTGTAGGCTAAA+GGG	+	chr5_2:48536916-48536935	Msa0773540:intron	35.0%
!	TTTTTGTCTACTCACAGGTT+TGG	-	chr5_2:48536996-48537015	None:intergenic	35.0%
	ACCTGTGAGTAGACAAAAAT+TGG	+	chr5_2:48536997-48537016	Msa0773540:intron	35.0%
!	TCCAATTTTTGTCTACTCAC+AGG	-	chr5_2:48537001-48537020	None:intergenic	35.0%
!!	GCTTCAGTTGATAAAACTCC+TGG	+	chr5_2:48535304-48535323	Msa0773540:five_prime_UTR	40.0%
!!	TCAGTTGATAAAACTCCTGG+AGG	+	chr5_2:48535307-48535326	Msa0773540:five_prime_UTR	40.0%
!	GAACCACCTGTAATTCCTTT+TGG	+	chr5_2:48535334-48535353	Msa0773540:intron	40.0%
	AAGCCAAAAGGAATTACAGG+TGG	-	chr5_2:48535340-48535359	None:intergenic	40.0%
	TTGATGCCTTTCAAGCCAAA+AGG	-	chr5_2:48535352-48535371	None:intergenic	40.0%
	GAAACACCTTCACAAGTAGA+AGG	-	chr5_2:48535409-48535428	None:intergenic	40.0%
	GTAATAATGCTTCAGAGGCT+GGG	-	chr5_2:48535444-48535463	None:intergenic	40.0%
	TGTAATAATGCTTCAGAGGC+TGG	-	chr5_2:48535445-48535464	None:intergenic	40.0%
	AAGGGAAGTTCAGTGGTAAA+TGG	+	chr5_2:48535532-48535551	Msa0773540:five_prime_UTR	40.0%
	AAATGGTATCCAGTCAAAGC+AGG	+	chr5_2:48535549-48535568	Msa0773540:five_prime_UTR	40.0%
	TCTTGAACCATCACTAGCAA+TGG	+	chr5_2:48535630-48535649	Msa0773540:exon	40.0%
!	AAGGAGCATAAATGACGTGA+TGG	+	chr5_2:48535740-48535759	Msa0773540:intron	40.0%
	CATAATATATGCAAGGTCCG+AGG	-	chr5_2:48536059-48536078	None:intergenic	40.0%
	GGCATGCCATTGTAAGTATT+AGG	+	chr5_2:48536366-48536385	Msa0773540:intron	40.0%
!	TCTGAGGTGATTAGTTGCTT+TGG	+	chr5_2:48536390-48536409	Msa0773540:intron	40.0%
!	CTGAGGTGATTAGTTGCTTT+GGG	+	chr5_2:48536391-48536410	Msa0773540:intron	40.0%
!	CCAAAGAAGGTTGATTACCT+GGG	-	chr5_2:48536667-48536686	None:intergenic	40.0%
!	ACCAAAGAAGGTTGATTACC+TGG	-	chr5_2:48536668-48536687	None:intergenic	40.0%
	TAAGGAGAAACTCAGTTGCT+TGG	-	chr5_2:48537047-48537066	None:intergenic	40.0%
	TATGCTCAGGTGTGTGATTT+CGG	+	chr5_2:48537114-48537133	Msa0773540:intron	40.0%
	TTGTCCTCAAAATCTGTTGC+TGG	+	chr5_2:48537165-48537184	Msa0773540:CDS	40.0%
	CTCAAAATCTGTTGCTGGAA+CGG	+	chr5_2:48537170-48537189	Msa0773540:CDS	40.0%
!!	GCTTCAGTTGATAAAACTCC+TGG	+	chr5_2:48535304-48535323	Msa0773540:five_prime_UTR	40.0%
!!	TCAGTTGATAAAACTCCTGG+AGG	+	chr5_2:48535307-48535326	Msa0773540:five_prime_UTR	40.0%
!	GAACCACCTGTAATTCCTTT+TGG	+	chr5_2:48535334-48535353	Msa0773540:intron	40.0%
	AAGCCAAAAGGAATTACAGG+TGG	-	chr5_2:48535340-48535359	None:intergenic	40.0%
	TTGATGCCTTTCAAGCCAAA+AGG	-	chr5_2:48535352-48535371	None:intergenic	40.0%
	GAAACACCTTCACAAGTAGA+AGG	-	chr5_2:48535409-48535428	None:intergenic	40.0%
	GTAATAATGCTTCAGAGGCT+GGG	-	chr5_2:48535444-48535463	None:intergenic	40.0%
	TGTAATAATGCTTCAGAGGC+TGG	-	chr5_2:48535445-48535464	None:intergenic	40.0%
	AAGGGAAGTTCAGTGGTAAA+TGG	+	chr5_2:48535532-48535551	Msa0773540:five_prime_UTR	40.0%
	AAATGGTATCCAGTCAAAGC+AGG	+	chr5_2:48535549-48535568	Msa0773540:five_prime_UTR	40.0%
	TCTTGAACCATCACTAGCAA+TGG	+	chr5_2:48535630-48535649	Msa0773540:exon	40.0%
!	AAGGAGCATAAATGACGTGA+TGG	+	chr5_2:48535740-48535759	Msa0773540:intron	40.0%
	CATAATATATGCAAGGTCCG+AGG	-	chr5_2:48536059-48536078	None:intergenic	40.0%
	GGCATGCCATTGTAAGTATT+AGG	+	chr5_2:48536366-48536385	Msa0773540:intron	40.0%
!	TCTGAGGTGATTAGTTGCTT+TGG	+	chr5_2:48536390-48536409	Msa0773540:intron	40.0%
!	CTGAGGTGATTAGTTGCTTT+GGG	+	chr5_2:48536391-48536410	Msa0773540:intron	40.0%
!	CCAAAGAAGGTTGATTACCT+GGG	-	chr5_2:48536667-48536686	None:intergenic	40.0%
!	ACCAAAGAAGGTTGATTACC+TGG	-	chr5_2:48536668-48536687	None:intergenic	40.0%
	TAAGGAGAAACTCAGTTGCT+TGG	-	chr5_2:48537047-48537066	None:intergenic	40.0%
	TATGCTCAGGTGTGTGATTT+CGG	+	chr5_2:48537114-48537133	Msa0773540:intron	40.0%
	TTGTCCTCAAAATCTGTTGC+TGG	+	chr5_2:48537165-48537184	Msa0773540:CDS	40.0%
	CTCAAAATCTGTTGCTGGAA+CGG	+	chr5_2:48537170-48537189	Msa0773540:CDS	40.0%
	CATTGCAAAGGGAAGTTCAG+TGG	+	chr5_2:48535525-48535544	Msa0773540:five_prime_UTR	45.0%
	CTACTTGTTCCTGCTTTGAC+TGG	-	chr5_2:48535561-48535580	None:intergenic	45.0%
	AACCATCACTAGCAATGGAC+TGG	+	chr5_2:48535635-48535654	Msa0773540:exon	45.0%
!!	TGGACTGGCTTGAGATATCA+TGG	+	chr5_2:48535650-48535669	Msa0773540:CDS	45.0%
!!	GGACTGGCTTGAGATATCAT+GGG	+	chr5_2:48535651-48535670	Msa0773540:CDS	45.0%
	AGATATCATGGGATGAGCTG+CGG	+	chr5_2:48535662-48535681	Msa0773540:CDS	45.0%
!	ATCAAAGAACGCATTGGTGC+TGG	+	chr5_2:48535685-48535704	Msa0773540:CDS	45.0%
!!	TGAAGAGCACCACATTTGGA+TGG	-	chr5_2:48536594-48536613	None:intergenic	45.0%
	TCCAAATGTGGTGCTCTTCA+TGG	+	chr5_2:48536594-48536613	Msa0773540:CDS	45.0%
	CCAAATGTGGTGCTCTTCAT+GGG	+	chr5_2:48536595-48536614	Msa0773540:CDS	45.0%
!	TAGTGACAGAGTATTTGCCC+AGG	+	chr5_2:48536647-48536666	Msa0773540:CDS	45.0%
	CCCAGGTAATCAACCTTCTT+TGG	+	chr5_2:48536664-48536683	Msa0773540:intron	45.0%
!	TTTCTTGGTGTGTATCGCAG+AGG	+	chr5_2:48536746-48536765	Msa0773540:intron	45.0%
	GTTTATTCCGCCTGATTCAC+CGG	+	chr5_2:48536771-48536790	Msa0773540:intron	45.0%
	CAGTGAAATGCACGATCCAA+GGG	+	chr5_2:48536802-48536821	Msa0773540:intron	45.0%
	AGTGAAATGCACGATCCAAG+GGG	+	chr5_2:48536803-48536822	Msa0773540:intron	45.0%
	TCCAAGGGGAAGATTACGAA+TGG	+	chr5_2:48536817-48536836	Msa0773540:intron	45.0%
	TTGAGATCCCAGTGCACTAT+TGG	-	chr5_2:48536969-48536988	None:intergenic	45.0%
	ATGCTCAGGTGTGTGATTTC+GGG	+	chr5_2:48537115-48537134	Msa0773540:intron	45.0%
	TTTCGGGCTGTCCAGATTTA+AGG	+	chr5_2:48537131-48537150	Msa0773540:CDS	45.0%
!	CGTTCCAGCAACAGATTTTG+AGG	-	chr5_2:48537172-48537191	None:intergenic	45.0%
	CATTGCAAAGGGAAGTTCAG+TGG	+	chr5_2:48535525-48535544	Msa0773540:five_prime_UTR	45.0%
	CTACTTGTTCCTGCTTTGAC+TGG	-	chr5_2:48535561-48535580	None:intergenic	45.0%
	AACCATCACTAGCAATGGAC+TGG	+	chr5_2:48535635-48535654	Msa0773540:exon	45.0%
!!	TGGACTGGCTTGAGATATCA+TGG	+	chr5_2:48535650-48535669	Msa0773540:CDS	45.0%
!!	GGACTGGCTTGAGATATCAT+GGG	+	chr5_2:48535651-48535670	Msa0773540:CDS	45.0%
	AGATATCATGGGATGAGCTG+CGG	+	chr5_2:48535662-48535681	Msa0773540:CDS	45.0%
!	ATCAAAGAACGCATTGGTGC+TGG	+	chr5_2:48535685-48535704	Msa0773540:CDS	45.0%
!!	TGAAGAGCACCACATTTGGA+TGG	-	chr5_2:48536594-48536613	None:intergenic	45.0%
	TCCAAATGTGGTGCTCTTCA+TGG	+	chr5_2:48536594-48536613	Msa0773540:CDS	45.0%
	CCAAATGTGGTGCTCTTCAT+GGG	+	chr5_2:48536595-48536614	Msa0773540:CDS	45.0%
!	TAGTGACAGAGTATTTGCCC+AGG	+	chr5_2:48536647-48536666	Msa0773540:CDS	45.0%
	CCCAGGTAATCAACCTTCTT+TGG	+	chr5_2:48536664-48536683	Msa0773540:intron	45.0%
!	TTTCTTGGTGTGTATCGCAG+AGG	+	chr5_2:48536746-48536765	Msa0773540:intron	45.0%
	GTTTATTCCGCCTGATTCAC+CGG	+	chr5_2:48536771-48536790	Msa0773540:intron	45.0%
	CAGTGAAATGCACGATCCAA+GGG	+	chr5_2:48536802-48536821	Msa0773540:intron	45.0%
	AGTGAAATGCACGATCCAAG+GGG	+	chr5_2:48536803-48536822	Msa0773540:intron	45.0%
	TCCAAGGGGAAGATTACGAA+TGG	+	chr5_2:48536817-48536836	Msa0773540:intron	45.0%
	TTGAGATCCCAGTGCACTAT+TGG	-	chr5_2:48536969-48536988	None:intergenic	45.0%
	ATGCTCAGGTGTGTGATTTC+GGG	+	chr5_2:48537115-48537134	Msa0773540:intron	45.0%
	TTTCGGGCTGTCCAGATTTA+AGG	+	chr5_2:48537131-48537150	Msa0773540:CDS	45.0%
!	CGTTCCAGCAACAGATTTTG+AGG	-	chr5_2:48537172-48537191	None:intergenic	45.0%
!	ACAGGTGGTTCTATACCTCC+AGG	-	chr5_2:48535325-48535344	None:intergenic	50.0%
!	GACTTCATAACCAGGGTGCT+GGG	+	chr5_2:48535587-48535606	Msa0773540:five_prime_UTR	50.0%
!!	ACTTCATAACCAGGGTGCTG+GGG	+	chr5_2:48535588-48535607	Msa0773540:five_prime_UTR	50.0%
	AGCCAGTCCATTGCTAGTGA+TGG	-	chr5_2:48535640-48535659	None:intergenic	50.0%
	CTGCGGATCAAAGAACGCAT+TGG	+	chr5_2:48535679-48535698	Msa0773540:CDS	50.0%
	CTGATCCATGCCATTCAGCA+CGG	-	chr5_2:48535817-48535836	None:intergenic	50.0%
!!!	TCTTTTTTTGGTGGTGGCCG+AGG	+	chr5_2:48536027-48536046	Msa0773540:intron	50.0%
	ACTTGTCCGCCATCCAAATG+TGG	+	chr5_2:48536582-48536601	Msa0773540:CDS	50.0%
!	AGAGCACCACATTTGGATGG+CGG	-	chr5_2:48536591-48536610	None:intergenic	50.0%
!!	CCCATGAAGAGCACCACATT+TGG	-	chr5_2:48536598-48536617	None:intergenic	50.0%
	TCGTGCATTTCACTGGATGC+TGG	-	chr5_2:48536797-48536816	None:intergenic	50.0%
	CCTTGGATCGTGCATTTCAC+TGG	-	chr5_2:48536804-48536823	None:intergenic	50.0%
	CCAGTGAAATGCACGATCCA+AGG	+	chr5_2:48536801-48536820	Msa0773540:intron	50.0%
	GCCATTCGTAATCTTCCCCT+TGG	-	chr5_2:48536821-48536840	None:intergenic	50.0%
	TGAAGCCTCCAATAGTGCAC+TGG	+	chr5_2:48536958-48536977	Msa0773540:intron	50.0%
	GAAGCCTCCAATAGTGCACT+GGG	+	chr5_2:48536959-48536978	Msa0773540:intron	50.0%
	AGATCCCAGTGCACTATTGG+AGG	-	chr5_2:48536966-48536985	None:intergenic	50.0%
!	ACAGGTGGTTCTATACCTCC+AGG	-	chr5_2:48535325-48535344	None:intergenic	50.0%
!	GACTTCATAACCAGGGTGCT+GGG	+	chr5_2:48535587-48535606	Msa0773540:five_prime_UTR	50.0%
!!	ACTTCATAACCAGGGTGCTG+GGG	+	chr5_2:48535588-48535607	Msa0773540:five_prime_UTR	50.0%
	AGCCAGTCCATTGCTAGTGA+TGG	-	chr5_2:48535640-48535659	None:intergenic	50.0%
	CTGCGGATCAAAGAACGCAT+TGG	+	chr5_2:48535679-48535698	Msa0773540:CDS	50.0%
	CTGATCCATGCCATTCAGCA+CGG	-	chr5_2:48535817-48535836	None:intergenic	50.0%
!!!	TCTTTTTTTGGTGGTGGCCG+AGG	+	chr5_2:48536027-48536046	Msa0773540:intron	50.0%
	ACTTGTCCGCCATCCAAATG+TGG	+	chr5_2:48536582-48536601	Msa0773540:CDS	50.0%
!	AGAGCACCACATTTGGATGG+CGG	-	chr5_2:48536591-48536610	None:intergenic	50.0%
!!	CCCATGAAGAGCACCACATT+TGG	-	chr5_2:48536598-48536617	None:intergenic	50.0%
	TCGTGCATTTCACTGGATGC+TGG	-	chr5_2:48536797-48536816	None:intergenic	50.0%
	CCTTGGATCGTGCATTTCAC+TGG	-	chr5_2:48536804-48536823	None:intergenic	50.0%
	CCAGTGAAATGCACGATCCA+AGG	+	chr5_2:48536801-48536820	Msa0773540:intron	50.0%
	GCCATTCGTAATCTTCCCCT+TGG	-	chr5_2:48536821-48536840	None:intergenic	50.0%
	TGAAGCCTCCAATAGTGCAC+TGG	+	chr5_2:48536958-48536977	Msa0773540:intron	50.0%
	GAAGCCTCCAATAGTGCACT+GGG	+	chr5_2:48536959-48536978	Msa0773540:intron	50.0%
	AGATCCCAGTGCACTATTGG+AGG	-	chr5_2:48536966-48536985	None:intergenic	50.0%
	CGACTTCATAACCAGGGTGC+TGG	+	chr5_2:48535586-48535605	Msa0773540:five_prime_UTR	55.0%
	TTGGAATATCCCCAGCACCC+TGG	-	chr5_2:48535600-48535619	None:intergenic	55.0%
	GGACAGTGTACCGTGCTGAA+TGG	+	chr5_2:48535804-48535823	Msa0773540:CDS	55.0%
	GTGTACCGTGCTGAATGGCA+TGG	+	chr5_2:48535809-48535828	Msa0773540:CDS	55.0%
	AAGGTCCGAGGTTCGAACCT+CGG	-	chr5_2:48536047-48536066	None:intergenic	55.0%
	TGTGGTGCTCTTCATGGGTG+CGG	+	chr5_2:48536600-48536619	Msa0773540:CDS	55.0%
	GCATTTCACTGGATGCTGGC+CGG	-	chr5_2:48536793-48536812	None:intergenic	55.0%
	CGACTTCATAACCAGGGTGC+TGG	+	chr5_2:48535586-48535605	Msa0773540:five_prime_UTR	55.0%
	TTGGAATATCCCCAGCACCC+TGG	-	chr5_2:48535600-48535619	None:intergenic	55.0%
	GGACAGTGTACCGTGCTGAA+TGG	+	chr5_2:48535804-48535823	Msa0773540:CDS	55.0%
	GTGTACCGTGCTGAATGGCA+TGG	+	chr5_2:48535809-48535828	Msa0773540:CDS	55.0%
	AAGGTCCGAGGTTCGAACCT+CGG	-	chr5_2:48536047-48536066	None:intergenic	55.0%
	TGTGGTGCTCTTCATGGGTG+CGG	+	chr5_2:48536600-48536619	Msa0773540:CDS	55.0%
	GCATTTCACTGGATGCTGGC+CGG	-	chr5_2:48536793-48536812	None:intergenic	55.0%
	ATGCTGGCCGGTGAATCAGG+CGG	-	chr5_2:48536781-48536800	None:intergenic	60.0%
	TGGATGCTGGCCGGTGAATC+AGG	-	chr5_2:48536784-48536803	None:intergenic	60.0%
	ATGCTGGCCGGTGAATCAGG+CGG	-	chr5_2:48536781-48536800	None:intergenic	60.0%
	TGGATGCTGGCCGGTGAATC+AGG	-	chr5_2:48536784-48536803	None:intergenic	60.0%
	GGTGGCCGAGGTTCGAACCT+CGG	+	chr5_2:48536039-48536058	Msa0773540:intron	65.0%
	GGTGGCCGAGGTTCGAACCT+CGG	+	chr5_2:48536039-48536058	Msa0773540:intron	65.0%

Chromosome	Type	Strat	End	Strand	Name
chr5_2	gene	48535192	48537280	48535192	ID=Msa0773540;Name=Msa0773540
chr5_2	mRNA	48535192	48537280	48535192	ID=Msa0773540-mRNA-1;Parent=Msa0773540;Name=Msa0773540-mRNA-1;_AED=0.31;_eAED=0.31;_QI=352\|0.75\|1\|1\|0.75\|0.8\|5\|85\|90
chr5_2	exon	48535192	48535328	48535192	ID=Msa0773540-mRNA-1:exon:14527;Parent=Msa0773540-mRNA-1
chr5_2	exon	48535434	48535706	48535434	ID=Msa0773540-mRNA-1:exon:14528;Parent=Msa0773540-mRNA-1
chr5_2	exon	48535795	48535835	48535795	ID=Msa0773540-mRNA-1:exon:14529;Parent=Msa0773540-mRNA-1
chr5_2	exon	48536568	48536668	48536568	ID=Msa0773540-mRNA-1:exon:14530;Parent=Msa0773540-mRNA-1
chr5_2	exon	48537123	48537280	48537123	ID=Msa0773540-mRNA-1:exon:14531;Parent=Msa0773540-mRNA-1
chr5_2	five_prime_UTR	48535192	48535328	48535192	ID=Msa0773540-mRNA-1:five_prime_utr;Parent=Msa0773540-mRNA-1
chr5_2	five_prime_UTR	48535434	48535648	48535434	ID=Msa0773540-mRNA-1:five_prime_utr;Parent=Msa0773540-mRNA-1
chr5_2	CDS	48535649	48535706	48535649	ID=Msa0773540-mRNA-1:cds;Parent=Msa0773540-mRNA-1
chr5_2	CDS	48535795	48535835	48535795	ID=Msa0773540-mRNA-1:cds;Parent=Msa0773540-mRNA-1
chr5_2	CDS	48536568	48536668	48536568	ID=Msa0773540-mRNA-1:cds;Parent=Msa0773540-mRNA-1
chr5_2	CDS	48537123	48537195	48537123	ID=Msa0773540-mRNA-1:cds;Parent=Msa0773540-mRNA-1
chr5_2	three_prime_UTR	48537196	48537280	48537196	ID=Msa0773540-mRNA-1:three_prime_utr;Parent=Msa0773540-mRNA-1

Gene Sequence	>Msa0773540 ATGGACTGGCTTGAGATATCATGGGATGAGCTGCGGATCAAAGAACGCATTGGTGCTGGATCATTTGGGACAGTGTACCGTGCTGAATGGCATGGATCAGTTGCAATAATGAAACTTGTCCGCCATCCAAATGTGGTGCTCTTCATGGGTGCGGTTACAAAGCGTCCTCATCTATCTATAGTGACAGAGTATTTGCCCAGGTGTGTGATTTCGGGCTGTCCAGATTTAAGGCAAATACTTTCTTGTCCTCAAAATCTGTTGCTGGAACGGTAA
Protein sequence	>Msa0773540 MDWLEISWDELRIKERIGAGSFGTVYRAEWHGSVAIMKLVRHPNVVLFMGAVTKRPHLSIVTEYLPRCVISGCPDLRQILSCPQNLLLER*