Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0308570 | XP_013463465.1 | 94.536 | 549 | 25 | 3 | 1 | 548 | 1 | 545 | 0.0 | 1039 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0308570 | sp|Q0JLP9|P2C06_ORYSJ | 55.738 | 366 | 135 | 8 | 192 | 548 | 120 | 467 | 1.18e-135 | 405 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0014410 | Msa0308570 | 0.820211 | 7.731171e-53 | -8.615850e-47 |
| Msa0020630 | Msa0308570 | 0.810411 | 1.168309e-50 | -8.615850e-47 |
| Msa0040410 | Msa0308570 | 0.815027 | 1.140864e-51 | -8.615850e-47 |
| Msa0040550 | Msa0308570 | -0.804000 | 2.664464e-49 | -8.615850e-47 |
| Msa0064550 | Msa0308570 | 0.853076 | 3.035278e-61 | -8.615850e-47 |
| Msa0104360 | Msa0308570 | 0.801680 | 8.030912e-49 | -8.615850e-47 |
| Msa0108070 | Msa0308570 | 0.879921 | 8.397072e-70 | -8.615850e-47 |
| Msa0109490 | Msa0308570 | 0.851077 | 1.122653e-60 | -8.615850e-47 |
| Msa0143280 | Msa0308570 | 0.821177 | 4.636765e-53 | -8.615850e-47 |
| Msa0154240 | Msa0308570 | 0.836094 | 1.144355e-56 | -8.615850e-47 |
| Msa0154270 | Msa0308570 | 0.850487 | 1.645176e-60 | -8.615850e-47 |
| Msa0159750 | Msa0308570 | 0.808980 | 2.372189e-50 | -8.615850e-47 |
| Msa0185640 | Msa0308570 | -0.807638 | 4.585064e-50 | -8.615850e-47 |
| Msa0197030 | Msa0308570 | 0.810424 | 1.160902e-50 | -8.615850e-47 |
| Msa0198440 | Msa0308570 | 0.800291 | 1.544088e-48 | -8.615850e-47 |
| Msa0202740 | Msa0308570 | 0.854063 | 1.579255e-61 | -8.615850e-47 |
| Msa0224370 | Msa0308570 | 0.806644 | 7.441025e-50 | -8.615850e-47 |
| Msa0245870 | Msa0308570 | 0.900364 | 7.887491e-78 | -8.615850e-47 |
| Msa0265580 | Msa0308570 | 0.801848 | 7.417764e-49 | -8.615850e-47 |
| Msa0303440 | Msa0308570 | 0.807326 | 5.339616e-50 | -8.615850e-47 |
| Msa0303500 | Msa0308570 | 0.815653 | 8.278472e-52 | -8.615850e-47 |
| Msa0308570 | Msa0344680 | 0.840565 | 8.055866e-58 | -8.615850e-47 |
| Msa0308570 | Msa0346790 | 0.800059 | 1.721407e-48 | -8.615850e-47 |
| Msa0308570 | Msa0354390 | 0.800241 | 1.580536e-48 | -8.615850e-47 |
| Msa0308570 | Msa0377280 | 0.834258 | 3.325346e-56 | -8.615850e-47 |
| Msa0308570 | Msa0379340 | -0.824521 | 7.718419e-54 | -8.615850e-47 |
| Msa0308570 | Msa0387970 | 0.819873 | 9.239450e-53 | -8.615850e-47 |
| Msa0308570 | Msa0389060 | 0.855801 | 4.945070e-62 | -8.615850e-47 |
| Msa0308570 | Msa0392050 | 0.844278 | 8.348563e-59 | -8.615850e-47 |
| Msa0308570 | Msa0401340 | 0.833998 | 3.863207e-56 | -8.615850e-47 |
| Msa0308570 | Msa0404060 | 0.802493 | 5.465870e-49 | -8.615850e-47 |
| Msa0308570 | Msa0404690 | 0.839857 | 1.232877e-57 | -8.615850e-47 |
| Msa0308570 | Msa0428850 | -0.827705 | 1.349907e-54 | -8.615850e-47 |
| Msa0308570 | Msa0448120 | 0.834614 | 2.706693e-56 | -8.615850e-47 |
| Msa0308570 | Msa0469950 | 0.845565 | 3.751420e-59 | -8.615850e-47 |
| Msa0308570 | Msa0525280 | 0.812507 | 4.093918e-51 | -8.615850e-47 |
| Msa0308570 | Msa0530340 | 0.837422 | 5.247266e-57 | -8.615850e-47 |
| Msa0308570 | Msa0545230 | 0.840609 | 7.842279e-58 | -8.615850e-47 |
| Msa0308570 | Msa0549540 | 0.809166 | 2.163995e-50 | -8.615850e-47 |
| Msa0308570 | Msa0556070 | 0.840635 | 7.719702e-58 | -8.615850e-47 |
| Msa0308570 | Msa0568600 | 0.809100 | 2.236220e-50 | -8.615850e-47 |
| Msa0308570 | Msa0569230 | 0.828764 | 7.497264e-55 | -8.615850e-47 |
| Msa0308570 | Msa0569360 | 0.814365 | 1.598913e-51 | -8.615850e-47 |
| Msa0308570 | Msa0569930 | 0.821021 | 5.037438e-53 | -8.615850e-47 |
| Msa0308570 | Msa0570680 | 0.804192 | 2.430246e-49 | -8.615850e-47 |
| Msa0308570 | Msa0571250 | 0.801611 | 8.298608e-49 | -8.615850e-47 |
| Msa0308570 | Msa0575850 | 0.801994 | 6.924419e-49 | -8.615850e-47 |
| Msa0308570 | Msa0600820 | 0.834905 | 2.287453e-56 | -8.615850e-47 |
| Msa0308570 | Msa0604880 | 0.813321 | 2.715603e-51 | -8.615850e-47 |
| Msa0308570 | Msa0605250 | 0.806272 | 8.915295e-50 | -8.615850e-47 |
| Msa0308570 | Msa0622250 | 0.839092 | 1.948055e-57 | -8.615850e-47 |
| Msa0308570 | Msa0627050 | 0.854800 | 9.671381e-62 | -8.615850e-47 |
| Msa0308570 | Msa0633720 | 0.823015 | 1.738643e-53 | -8.615850e-47 |
| Msa0308570 | Msa0646190 | 0.810228 | 1.279532e-50 | -8.615850e-47 |
| Msa0308570 | Msa0646340 | 0.858597 | 7.385762e-63 | -8.615850e-47 |
| Msa0308570 | Msa0657860 | 0.806314 | 8.734504e-50 | -8.615850e-47 |
| Msa0308570 | Msa0675010 | 0.842935 | 1.908575e-58 | -8.615850e-47 |
| Msa0308570 | Msa0685890 | 0.827887 | 1.220699e-54 | -8.615850e-47 |
| Msa0308570 | Msa0688110 | 0.846663 | 1.885897e-59 | -8.615850e-47 |
| Msa0308570 | Msa0693400 | 0.856371 | 3.366233e-62 | -8.615850e-47 |
| Msa0308570 | Msa0702200 | 0.807436 | 5.059233e-50 | -8.615850e-47 |
| Msa0308570 | Msa0727300 | 0.805020 | 1.632967e-49 | -8.615850e-47 |
| Msa0308570 | Msa0748330 | 0.833177 | 6.194040e-56 | -8.615850e-47 |
| Msa0308570 | Msa0749150 | 0.837062 | 6.486967e-57 | -8.615850e-47 |
| Msa0308570 | Msa0775580 | 0.842061 | 3.253702e-58 | -8.615850e-47 |
| Msa0308570 | Msa0786100 | 0.800059 | 1.721291e-48 | -8.615850e-47 |
| Msa0308570 | Msa0792880 | 0.844476 | 7.384335e-59 | -8.615850e-47 |
| Msa0308570 | Msa0793100 | 0.800344 | 1.506054e-48 | -8.615850e-47 |
| Msa0308570 | Msa0812970 | 0.814990 | 1.162686e-51 | -8.615850e-47 |
| Msa0308570 | Msa0813030 | 0.810593 | 1.066944e-50 | -8.615850e-47 |
| Msa0308570 | Msa0828570 | 0.828671 | 7.895461e-55 | -8.615850e-47 |
| Msa0308570 | Msa0828900 | 0.844289 | 8.288461e-59 | -8.615850e-47 |
| Msa0308570 | Msa0882700 | 0.813074 | 3.077150e-51 | -8.615850e-47 |
| Msa0308570 | Msa0888820 | 0.817509 | 3.177941e-52 | -8.615850e-47 |
| Msa0308570 | Msa0899700 | 0.811447 | 6.968862e-51 | -8.615850e-47 |
| Msa0308570 | Msa0911910 | 0.820172 | 7.891278e-53 | -8.615850e-47 |
| Msa0308570 | Msa0936650 | 0.839060 | 1.985410e-57 | -8.615850e-47 |
| Msa0308570 | Msa0964680 | 0.808257 | 3.384997e-50 | -8.615850e-47 |
| Msa0308570 | Msa0968780 | 0.818688 | 1.719941e-52 | -8.615850e-47 |
| Msa0308570 | Msa0970050 | 0.809371 | 1.956124e-50 | -8.615850e-47 |
| Msa0308570 | Msa0973890 | 0.821557 | 3.790044e-53 | -8.615850e-47 |
| Msa0308570 | Msa0984000 | 0.860876 | 1.521273e-63 | -8.615850e-47 |
| Msa0308570 | Msa1004210 | 0.813239 | 2.830742e-51 | -8.615850e-47 |
| Msa0308570 | Msa1016670 | 0.806903 | 6.562618e-50 | -8.615850e-47 |
| Msa0308570 | Msa1028780 | 0.802065 | 6.696060e-49 | -8.615850e-47 |
| Msa0308570 | Msa1046610 | 0.806786 | 6.947269e-50 | -8.615850e-47 |
| Msa0308570 | Msa1082150 | 0.876279 | 1.584821e-68 | -8.615850e-47 |
| Msa0308570 | Msa1093390 | 0.819964 | 8.808661e-53 | -8.615850e-47 |
| Msa0308570 | Msa1102540 | 0.802022 | 6.832616e-49 | -8.615850e-47 |
| Msa0308570 | Msa1120660 | 0.810553 | 1.088392e-50 | -8.615850e-47 |
| Msa0308570 | Msa1125450 | 0.810593 | 1.066888e-50 | -8.615850e-47 |
| Msa0308570 | Msa1144730 | 0.846130 | 2.635043e-59 | -8.615850e-47 |
| Msa0308570 | Msa1164570 | 0.813404 | 2.604088e-51 | -8.615850e-47 |
| Msa0308570 | Msa1173380 | 0.850165 | 2.025061e-60 | -8.615850e-47 |
| Msa0308570 | Msa1178120 | 0.804171 | 2.455623e-49 | -8.615850e-47 |
| Msa0308570 | Msa1182800 | 0.853253 | 2.700095e-61 | -8.615850e-47 |
| Msa0308570 | Msa1182830 | 0.844941 | 5.532793e-59 | -8.615850e-47 |
| Msa0308570 | Msa1193400 | 0.814282 | 1.667655e-51 | -8.615850e-47 |
| Msa0308570 | Msa1193430 | 0.813562 | 2.403927e-51 | -8.615850e-47 |
| Msa0308570 | Msa1206760 | 0.818167 | 2.257155e-52 | -8.615850e-47 |
| Msa0308570 | Msa1233770 | 0.815184 | 1.052579e-51 | -8.615850e-47 |
| Msa0308570 | Msa1243730 | 0.827921 | 1.197402e-54 | -8.615850e-47 |
| Msa0308570 | Msa1249410 | 0.813476 | 2.510816e-51 | -8.615850e-47 |
| Msa0308570 | Msa1252300 | 0.828205 | 1.023073e-54 | -8.615850e-47 |
| Msa0308570 | Msa1272950 | 0.823063 | 1.694891e-53 | -8.615850e-47 |
| Msa0308570 | Msa1276080 | 0.807004 | 6.247486e-50 | -8.615850e-47 |
| Msa0308570 | Msa1296960 | -0.802123 | 6.514058e-49 | -8.615850e-47 |
| Msa0308570 | Msa1317710 | 0.807556 | 4.771068e-50 | -8.615850e-47 |
| Msa0308570 | Msa1326400 | 0.830187 | 3.382161e-55 | -8.615850e-47 |
| Msa0308570 | Msa1340530 | 0.815682 | 8.155815e-52 | -8.615850e-47 |
| Msa0308570 | Msa1349810 | 0.841422 | 4.797815e-58 | -8.615850e-47 |
| Msa0308570 | Msa1358340 | 0.837313 | 5.595999e-57 | -8.615850e-47 |
| Msa0308570 | Msa1386250 | 0.826551 | 2.549521e-54 | -8.615850e-47 |
| Msa0308570 | Msa1394900 | 0.825730 | 3.997013e-54 | -8.615850e-47 |
| Msa0308570 | Msa1406020 | 0.818175 | 2.247877e-52 | -8.615850e-47 |
| Msa0308570 | Msa1434660 | 0.815466 | 9.112516e-52 | -8.615850e-47 |
| Msa0308570 | Msa1443550 | 0.833711 | 4.557958e-56 | -8.615850e-47 |
| Msa0308570 | Msa1459540 | 0.817741 | 2.817269e-52 | -8.615850e-47 |
| Msa0308570 | Msa1463560 | -0.814236 | 1.707081e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0308570 | MtrunA17_Chr2g0299981 | 94.536 | 549 | 25 | 3 | 1 | 548 | 1 | 545 | 0.0 | 1039 |
| Msa0308570 | MtrunA17_Chr4g0070871 | 57.042 | 568 | 169 | 10 | 1 | 548 | 1 | 513 | 0.0 | 592 |
| Msa0308570 | MtrunA17_Chr1g0150781 | 44.810 | 578 | 264 | 14 | 1 | 548 | 1 | 553 | 4.94e-151 | 444 |
| Msa0308570 | MtrunA17_Chr3g0135961 | 44.655 | 580 | 258 | 15 | 1 | 548 | 1 | 549 | 1.51e-148 | 437 |
| Msa0308570 | MtrunA17_Chr8g0389921 | 46.037 | 328 | 132 | 7 | 224 | 543 | 149 | 439 | 4.98e-87 | 276 |
| Msa0308570 | MtrunA17_Chr3g0112291 | 43.695 | 341 | 145 | 9 | 211 | 543 | 80 | 381 | 7.36e-82 | 261 |
| Msa0308570 | MtrunA17_Chr5g0396731 | 44.025 | 318 | 141 | 6 | 221 | 538 | 70 | 350 | 4.36e-71 | 231 |
| Msa0308570 | MtrunA17_Chr1g0158781 | 45.062 | 324 | 121 | 9 | 222 | 540 | 110 | 381 | 5.55e-69 | 227 |
| Msa0308570 | MtrunA17_Chr5g0435721 | 45.385 | 260 | 109 | 3 | 221 | 480 | 190 | 416 | 7.62e-67 | 224 |
| Msa0308570 | MtrunA17_Chr1g0150451 | 33.523 | 352 | 155 | 10 | 195 | 543 | 53 | 328 | 2.28e-45 | 162 |
| Msa0308570 | MtrunA17_Chr3g0136711 | 33.841 | 328 | 142 | 8 | 212 | 536 | 23 | 278 | 3.90e-45 | 161 |
| Msa0308570 | MtrunA17_Chr1g0212961 | 33.333 | 372 | 169 | 11 | 170 | 536 | 38 | 335 | 7.02e-44 | 159 |
| Msa0308570 | MtrunA17_Chr3g0126511 | 33.125 | 320 | 143 | 7 | 225 | 543 | 96 | 345 | 1.56e-39 | 147 |
| Msa0308570 | MtrunA17_Chr5g0430481 | 32.907 | 313 | 138 | 9 | 231 | 539 | 131 | 375 | 1.28e-37 | 142 |
| Msa0308570 | MtrunA17_Chr3g0105351 | 33.212 | 274 | 127 | 7 | 270 | 539 | 94 | 315 | 1.38e-35 | 135 |
| Msa0308570 | MtrunA17_Chr1g0150071 | 33.333 | 291 | 148 | 9 | 224 | 489 | 24 | 293 | 1.27e-34 | 134 |
| Msa0308570 | MtrunA17_Chr4g0050381 | 33.945 | 327 | 139 | 13 | 219 | 540 | 24 | 278 | 1.52e-34 | 131 |
| Msa0308570 | MtrunA17_Chr3g0105371 | 32.847 | 274 | 128 | 6 | 270 | 539 | 118 | 339 | 1.80e-34 | 133 |
| Msa0308570 | MtrunA17_Chr3g0136811 | 30.725 | 345 | 180 | 10 | 224 | 543 | 24 | 334 | 7.87e-34 | 132 |
| Msa0308570 | MtrunA17_Chr4g0001761 | 32.845 | 341 | 169 | 13 | 224 | 539 | 24 | 329 | 2.46e-33 | 130 |
| Msa0308570 | MtrunA17_Chr4g0065141 | 29.670 | 364 | 179 | 11 | 190 | 541 | 55 | 353 | 9.34e-32 | 126 |
| Msa0308570 | MtrunA17_Chr3g0115851 | 31.343 | 335 | 154 | 11 | 209 | 539 | 20 | 282 | 4.33e-31 | 122 |
| Msa0308570 | MtrunA17_Chr2g0279151 | 32.941 | 340 | 148 | 15 | 205 | 539 | 17 | 281 | 5.05e-29 | 116 |
| Msa0308570 | MtrunA17_Chr8g0360351 | 31.594 | 345 | 157 | 13 | 199 | 536 | 7 | 279 | 2.44e-28 | 114 |
| Msa0308570 | MtrunA17_Chr5g0426141 | 31.579 | 342 | 156 | 13 | 202 | 539 | 15 | 282 | 3.76e-28 | 114 |
| Msa0308570 | MtrunA17_Chr3g0138281 | 29.154 | 319 | 160 | 10 | 230 | 541 | 89 | 348 | 5.96e-28 | 115 |
| Msa0308570 | MtrunA17_Chr1g0194191 | 31.655 | 278 | 139 | 10 | 270 | 540 | 118 | 351 | 1.87e-27 | 114 |
| Msa0308570 | MtrunA17_Chr1g0171571 | 30.503 | 318 | 159 | 10 | 224 | 539 | 388 | 645 | 9.67e-27 | 114 |
| Msa0308570 | MtrunA17_Chr5g0407161 | 31.136 | 273 | 129 | 9 | 270 | 536 | 124 | 343 | 1.27e-26 | 111 |
| Msa0308570 | MtrunA17_Chr2g0317021 | 31.519 | 349 | 159 | 15 | 199 | 539 | 57 | 333 | 8.77e-26 | 108 |
| Msa0308570 | MtrunA17_Chr4g0051661 | 31.852 | 270 | 124 | 8 | 270 | 536 | 183 | 395 | 4.01e-25 | 107 |
| Msa0308570 | MtrunA17_Chr3g0144111 | 30.292 | 274 | 109 | 9 | 270 | 536 | 27 | 225 | 6.69e-25 | 103 |
| Msa0308570 | MtrunA17_Chr2g0293811 | 30.325 | 277 | 144 | 10 | 270 | 540 | 100 | 333 | 1.36e-23 | 102 |
| Msa0308570 | MtrunA17_Chr3g0127091 | 26.685 | 371 | 177 | 15 | 204 | 538 | 38 | 349 | 1.11e-21 | 97.4 |
| Msa0308570 | MtrunA17_Chr7g0243571 | 31.321 | 265 | 123 | 11 | 251 | 478 | 77 | 319 | 6.23e-21 | 95.5 |
| Msa0308570 | MtrunA17_Chr3g0089721 | 28.947 | 304 | 160 | 8 | 268 | 538 | 66 | 346 | 3.62e-19 | 89.4 |
| Msa0308570 | MtrunA17_Chr4g0067711 | 33.475 | 236 | 113 | 10 | 270 | 479 | 91 | 308 | 1.11e-18 | 87.8 |
| Msa0308570 | MtrunA17_Chr1g0185141 | 25.323 | 387 | 194 | 15 | 231 | 540 | 72 | 440 | 1.24e-18 | 90.1 |
| Msa0308570 | MtrunA17_Chr7g0256771 | 30.233 | 258 | 122 | 9 | 255 | 479 | 55 | 287 | 1.44e-18 | 86.7 |
| Msa0308570 | MtrunA17_Chr3g0089711 | 28.618 | 304 | 161 | 8 | 268 | 538 | 66 | 346 | 2.33e-18 | 87.0 |
| Msa0308570 | MtrunA17_Chr7g0250061 | 27.711 | 249 | 120 | 8 | 270 | 484 | 76 | 298 | 1.38e-17 | 84.7 |
| Msa0308570 | MtrunA17_Chr1g0151781 | 29.362 | 235 | 123 | 7 | 270 | 479 | 68 | 284 | 6.92e-17 | 82.4 |
| Msa0308570 | MtrunA17_Chr7g0221691 | 31.120 | 241 | 129 | 8 | 270 | 478 | 129 | 364 | 8.03e-17 | 83.2 |
| Msa0308570 | MtrunA17_Chr8g0371321 | 27.530 | 247 | 123 | 6 | 270 | 484 | 79 | 301 | 9.01e-17 | 82.4 |
| Msa0308570 | MtrunA17_Chr1g0209451 | 27.796 | 313 | 154 | 10 | 237 | 538 | 46 | 297 | 1.02e-16 | 82.8 |
| Msa0308570 | MtrunA17_Chr7g0225501 | 31.193 | 218 | 115 | 8 | 271 | 477 | 87 | 280 | 1.54e-16 | 82.0 |
| Msa0308570 | MtrunA17_Chr7g0272061 | 31.950 | 241 | 123 | 9 | 270 | 481 | 91 | 319 | 1.58e-16 | 81.6 |
| Msa0308570 | MtrunA17_Chr7g0256751 | 28.295 | 258 | 131 | 8 | 255 | 481 | 54 | 288 | 1.83e-16 | 82.0 |
| Msa0308570 | MtrunA17_Chr1g0211251 | 27.309 | 249 | 121 | 8 | 270 | 484 | 81 | 303 | 2.77e-16 | 80.9 |
| Msa0308570 | MtrunA17_Chr7g0249421 | 30.769 | 247 | 136 | 8 | 270 | 481 | 96 | 342 | 7.08e-16 | 80.5 |
| Msa0308570 | MtrunA17_Chr1g0213351 | 27.126 | 247 | 124 | 6 | 270 | 484 | 80 | 302 | 1.87e-15 | 78.2 |
| Msa0308570 | MtrunA17_Chr7g0263281 | 26.639 | 244 | 123 | 7 | 270 | 481 | 71 | 290 | 3.01e-15 | 77.4 |
| Msa0308570 | MtrunA17_Chr4g0063111 | 26.970 | 330 | 166 | 14 | 251 | 541 | 56 | 349 | 1.92e-14 | 75.9 |
| Msa0308570 | MtrunA17_Chr4g0004971 | 29.098 | 244 | 125 | 10 | 264 | 478 | 74 | 298 | 2.58e-14 | 74.7 |
| Msa0308570 | MtrunA17_Chr1g0192421 | 29.412 | 238 | 124 | 7 | 270 | 481 | 89 | 308 | 9.69e-14 | 72.8 |
| Msa0308570 | MtrunA17_Chr3g0133801 | 26.761 | 284 | 147 | 10 | 271 | 543 | 67 | 300 | 2.98e-13 | 72.0 |
| Msa0308570 | MtrunA17_Chr7g0271971 | 25.610 | 328 | 171 | 9 | 222 | 538 | 32 | 297 | 3.58e-13 | 71.6 |
| Msa0308570 | MtrunA17_Chr1g0153671 | 25.740 | 338 | 177 | 12 | 228 | 543 | 14 | 299 | 3.95e-13 | 71.6 |
| Msa0308570 | MtrunA17_Chr2g0294291 | 25.896 | 251 | 131 | 7 | 267 | 485 | 72 | 299 | 4.93e-13 | 70.9 |
| Msa0308570 | MtrunA17_Chr7g0238501 | 24.092 | 303 | 183 | 9 | 270 | 541 | 263 | 549 | 7.18e-13 | 71.2 |
| Msa0308570 | MtrunA17_Chr1g0192471 | 25.234 | 321 | 164 | 9 | 231 | 538 | 40 | 297 | 7.12e-12 | 67.4 |
| Msa0308570 | MtrunA17_Chr3g0089691 | 31.280 | 211 | 112 | 6 | 361 | 538 | 50 | 260 | 9.45e-12 | 66.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0308570 | AT4G26080.1 | 55.587 | 349 | 124 | 5 | 204 | 547 | 109 | 431 | 4.87e-130 | 387 |
| Msa0308570 | AT1G72770.4 | 56.380 | 337 | 134 | 6 | 217 | 548 | 183 | 511 | 5.58e-129 | 387 |
| Msa0308570 | AT1G72770.1 | 56.380 | 337 | 134 | 6 | 217 | 548 | 183 | 511 | 5.58e-129 | 387 |
| Msa0308570 | AT1G72770.3 | 56.380 | 337 | 134 | 6 | 217 | 548 | 183 | 511 | 5.58e-129 | 387 |
| Msa0308570 | AT5G57050.1 | 49.400 | 417 | 178 | 6 | 140 | 548 | 30 | 421 | 1.25e-128 | 382 |
| Msa0308570 | AT1G17550.1 | 45.940 | 468 | 233 | 10 | 91 | 548 | 54 | 511 | 2.15e-128 | 385 |
| Msa0308570 | AT1G17550.2 | 45.940 | 468 | 233 | 10 | 91 | 548 | 54 | 511 | 2.15e-128 | 385 |
| Msa0308570 | AT5G57050.2 | 53.083 | 373 | 146 | 5 | 184 | 548 | 30 | 381 | 1.65e-127 | 378 |
| Msa0308570 | AT2G29380.1 | 44.512 | 328 | 149 | 8 | 212 | 539 | 67 | 361 | 3.71e-81 | 258 |
| Msa0308570 | AT1G07430.1 | 39.691 | 388 | 167 | 9 | 184 | 543 | 90 | 438 | 9.60e-76 | 247 |
| Msa0308570 | AT5G51760.2 | 42.857 | 336 | 166 | 6 | 215 | 543 | 70 | 386 | 9.96e-76 | 245 |
| Msa0308570 | AT5G51760.1 | 42.029 | 345 | 156 | 7 | 215 | 543 | 100 | 416 | 1.68e-75 | 245 |
| Msa0308570 | AT3G11410.1 | 47.970 | 271 | 111 | 6 | 218 | 484 | 99 | 343 | 7.57e-75 | 243 |
| Msa0308570 | AT5G57050.3 | 44.118 | 306 | 141 | 6 | 140 | 441 | 30 | 309 | 7.28e-74 | 238 |
| Msa0308570 | AT1G72770.2 | 53.982 | 226 | 92 | 5 | 217 | 437 | 183 | 401 | 4.12e-72 | 236 |
| Msa0308570 | AT1G72770.5 | 53.982 | 226 | 92 | 5 | 217 | 437 | 183 | 401 | 4.12e-72 | 236 |
| Msa0308570 | AT5G59220.1 | 46.415 | 265 | 109 | 5 | 222 | 484 | 110 | 343 | 4.66e-70 | 231 |
| Msa0308570 | AT5G59220.2 | 44.037 | 218 | 89 | 5 | 222 | 437 | 110 | 296 | 1.02e-49 | 174 |
| Msa0308570 | AT4G31750.2 | 34.049 | 326 | 144 | 9 | 212 | 536 | 22 | 277 | 1.60e-44 | 160 |
| Msa0308570 | AT4G31750.1 | 34.049 | 326 | 144 | 9 | 212 | 536 | 22 | 277 | 1.70e-44 | 160 |
| Msa0308570 | AT4G31750.3 | 34.049 | 326 | 144 | 9 | 212 | 536 | 22 | 277 | 1.70e-44 | 160 |
| Msa0308570 | AT1G43900.1 | 33.750 | 320 | 134 | 7 | 224 | 539 | 124 | 369 | 7.23e-44 | 160 |
| Msa0308570 | AT5G24940.1 | 36.900 | 271 | 122 | 6 | 211 | 480 | 21 | 243 | 1.24e-43 | 161 |
| Msa0308570 | AT5G10740.1 | 34.242 | 330 | 140 | 10 | 211 | 536 | 21 | 277 | 3.29e-43 | 157 |
| Msa0308570 | AT5G10740.2 | 34.242 | 330 | 140 | 10 | 211 | 536 | 21 | 277 | 3.29e-43 | 157 |
| Msa0308570 | AT5G53140.1 | 33.228 | 316 | 140 | 7 | 225 | 539 | 103 | 348 | 2.66e-41 | 154 |
| Msa0308570 | AT5G53140.2 | 33.228 | 316 | 140 | 7 | 225 | 539 | 103 | 348 | 2.66e-41 | 154 |
| Msa0308570 | AT1G67820.2 | 37.743 | 257 | 111 | 6 | 224 | 479 | 85 | 293 | 4.45e-40 | 150 |
| Msa0308570 | AT1G67820.1 | 37.743 | 257 | 111 | 6 | 224 | 479 | 121 | 329 | 8.63e-40 | 150 |
| Msa0308570 | AT2G30020.1 | 34.069 | 317 | 138 | 8 | 231 | 544 | 147 | 395 | 1.10e-38 | 146 |
| Msa0308570 | AT2G40180.1 | 32.353 | 340 | 162 | 11 | 208 | 539 | 107 | 386 | 3.00e-38 | 145 |
| Msa0308570 | AT1G07160.1 | 35.294 | 272 | 125 | 5 | 270 | 538 | 153 | 376 | 1.30e-36 | 140 |
| Msa0308570 | AT4G31860.1 | 32.258 | 341 | 172 | 13 | 224 | 539 | 24 | 330 | 1.15e-32 | 129 |
| Msa0308570 | AT4G31860.3 | 34.602 | 289 | 143 | 11 | 224 | 487 | 24 | 291 | 1.24e-32 | 127 |
| Msa0308570 | AT2G25620.1 | 31.269 | 323 | 152 | 10 | 230 | 541 | 96 | 359 | 2.55e-32 | 128 |
| Msa0308570 | AT2G25620.2 | 31.269 | 323 | 152 | 10 | 230 | 541 | 96 | 359 | 2.55e-32 | 128 |
| Msa0308570 | AT1G34750.2 | 33.036 | 336 | 149 | 13 | 208 | 539 | 19 | 282 | 2.02e-31 | 123 |
| Msa0308570 | AT1G34750.1 | 33.036 | 336 | 149 | 13 | 208 | 539 | 19 | 282 | 2.02e-31 | 123 |
| Msa0308570 | AT1G34750.3 | 33.036 | 336 | 149 | 13 | 208 | 539 | 19 | 282 | 2.02e-31 | 123 |
| Msa0308570 | AT2G25070.1 | 30.747 | 348 | 176 | 14 | 224 | 546 | 24 | 331 | 4.44e-31 | 124 |
| Msa0308570 | AT2G25070.2 | 30.747 | 348 | 176 | 14 | 224 | 546 | 24 | 331 | 4.44e-31 | 124 |
| Msa0308570 | AT1G22280.3 | 31.562 | 320 | 149 | 12 | 224 | 539 | 34 | 287 | 2.76e-30 | 120 |
| Msa0308570 | AT1G48040.1 | 33.212 | 274 | 134 | 8 | 270 | 536 | 116 | 347 | 2.06e-29 | 120 |
| Msa0308570 | AT3G51470.1 | 29.487 | 312 | 148 | 10 | 231 | 536 | 80 | 325 | 6.87e-29 | 118 |
| Msa0308570 | AT3G51470.2 | 29.487 | 312 | 148 | 10 | 231 | 536 | 36 | 281 | 7.35e-29 | 117 |
| Msa0308570 | AT4G31860.2 | 35.165 | 273 | 131 | 11 | 224 | 471 | 24 | 275 | 7.90e-29 | 115 |
| Msa0308570 | AT1G22280.1 | 31.875 | 320 | 142 | 12 | 224 | 539 | 34 | 281 | 8.00e-29 | 116 |
| Msa0308570 | AT2G33700.1 | 30.887 | 327 | 149 | 12 | 222 | 536 | 81 | 342 | 1.90e-28 | 117 |
| Msa0308570 | AT1G78200.1 | 30.031 | 323 | 147 | 9 | 224 | 539 | 33 | 283 | 2.84e-28 | 114 |
| Msa0308570 | AT1G78200.3 | 30.031 | 323 | 147 | 9 | 224 | 539 | 33 | 283 | 2.84e-28 | 114 |
| Msa0308570 | AT1G78200.2 | 30.031 | 323 | 147 | 9 | 224 | 539 | 33 | 283 | 2.84e-28 | 114 |
| Msa0308570 | AT3G17250.1 | 29.348 | 276 | 144 | 5 | 270 | 536 | 158 | 391 | 4.06e-28 | 117 |
| Msa0308570 | AT2G40860.4 | 31.132 | 318 | 154 | 11 | 225 | 539 | 296 | 551 | 1.10e-27 | 117 |
| Msa0308570 | AT2G40860.1 | 31.132 | 318 | 154 | 11 | 225 | 539 | 394 | 649 | 1.43e-27 | 117 |
| Msa0308570 | AT1G78200.5 | 30.797 | 276 | 129 | 7 | 270 | 539 | 19 | 238 | 1.71e-27 | 111 |
| Msa0308570 | AT1G78200.4 | 30.797 | 276 | 129 | 7 | 270 | 539 | 19 | 238 | 1.71e-27 | 111 |
| Msa0308570 | AT3G15260.2 | 30.000 | 320 | 148 | 11 | 224 | 539 | 42 | 289 | 5.62e-27 | 111 |
| Msa0308570 | AT3G15260.1 | 30.000 | 320 | 148 | 11 | 224 | 539 | 42 | 289 | 5.62e-27 | 111 |
| Msa0308570 | AT3G62260.1 | 30.037 | 273 | 143 | 8 | 270 | 536 | 116 | 346 | 1.08e-26 | 112 |
| Msa0308570 | AT3G62260.2 | 30.037 | 273 | 143 | 8 | 270 | 536 | 117 | 347 | 1.10e-26 | 112 |
| Msa0308570 | AT3G62260.3 | 30.037 | 273 | 143 | 8 | 270 | 536 | 27 | 257 | 1.16e-26 | 110 |
| Msa0308570 | AT2G34740.1 | 30.449 | 312 | 148 | 11 | 232 | 536 | 83 | 332 | 1.62e-26 | 110 |
| Msa0308570 | AT4G28400.3 | 31.724 | 290 | 136 | 10 | 255 | 538 | 27 | 260 | 3.29e-26 | 108 |
| Msa0308570 | AT4G28400.1 | 31.724 | 290 | 136 | 10 | 255 | 538 | 49 | 282 | 6.02e-26 | 108 |
| Msa0308570 | AT1G34750.4 | 32.616 | 279 | 132 | 11 | 208 | 482 | 19 | 245 | 9.40e-26 | 106 |
| Msa0308570 | AT2G40860.2 | 31.955 | 266 | 137 | 9 | 225 | 487 | 394 | 618 | 2.11e-25 | 110 |
| Msa0308570 | AT2G20630.1 | 32.203 | 236 | 120 | 7 | 255 | 484 | 45 | 246 | 1.55e-24 | 103 |
| Msa0308570 | AT2G20630.2 | 32.203 | 236 | 120 | 7 | 255 | 484 | 45 | 246 | 4.87e-24 | 102 |
| Msa0308570 | AT4G08260.1 | 30.108 | 279 | 103 | 6 | 271 | 544 | 20 | 211 | 2.64e-23 | 98.6 |
| Msa0308570 | AT2G34740.2 | 31.225 | 253 | 127 | 10 | 232 | 477 | 97 | 309 | 3.01e-22 | 98.2 |
| Msa0308570 | AT2G34740.3 | 31.225 | 253 | 127 | 10 | 232 | 477 | 79 | 291 | 3.74e-22 | 97.8 |
| Msa0308570 | AT3G16800.2 | 33.898 | 236 | 116 | 9 | 270 | 484 | 93 | 309 | 4.63e-22 | 98.2 |
| Msa0308570 | AT3G16800.1 | 33.898 | 236 | 116 | 9 | 270 | 484 | 93 | 309 | 4.63e-22 | 98.2 |
| Msa0308570 | AT3G16800.3 | 33.898 | 236 | 116 | 9 | 270 | 484 | 93 | 309 | 4.63e-22 | 98.2 |
| Msa0308570 | AT3G63320.1 | 26.554 | 354 | 184 | 12 | 246 | 540 | 46 | 382 | 2.60e-21 | 97.1 |
| Msa0308570 | AT3G16800.4 | 33.476 | 233 | 115 | 9 | 273 | 484 | 1 | 214 | 4.46e-21 | 93.2 |
| Msa0308570 | AT3G16800.6 | 33.476 | 233 | 115 | 9 | 273 | 484 | 1 | 214 | 4.46e-21 | 93.2 |
| Msa0308570 | AT3G63320.2 | 31.416 | 226 | 97 | 8 | 362 | 540 | 85 | 299 | 5.20e-21 | 95.5 |
| Msa0308570 | AT4G28400.2 | 31.111 | 225 | 115 | 7 | 255 | 473 | 49 | 239 | 1.03e-20 | 92.4 |
| Msa0308570 | AT4G27800.1 | 27.877 | 391 | 177 | 16 | 195 | 543 | 34 | 361 | 2.08e-20 | 94.0 |
| Msa0308570 | AT3G63340.12 | 25.888 | 394 | 191 | 14 | 227 | 540 | 75 | 447 | 7.14e-20 | 93.6 |
| Msa0308570 | AT3G63340.11 | 31.416 | 226 | 97 | 8 | 362 | 540 | 233 | 447 | 2.31e-19 | 92.8 |
| Msa0308570 | AT3G63340.6 | 31.416 | 226 | 97 | 8 | 362 | 540 | 233 | 447 | 3.28e-19 | 92.4 |
| Msa0308570 | AT3G63340.3 | 31.416 | 226 | 97 | 8 | 362 | 540 | 233 | 447 | 3.28e-19 | 92.4 |
| Msa0308570 | AT3G63340.10 | 31.416 | 226 | 97 | 8 | 362 | 540 | 233 | 447 | 3.28e-19 | 92.4 |
| Msa0308570 | AT3G63340.4 | 31.416 | 226 | 97 | 8 | 362 | 540 | 233 | 447 | 3.28e-19 | 92.4 |
| Msa0308570 | AT3G63340.7 | 31.416 | 226 | 97 | 8 | 362 | 540 | 233 | 447 | 3.28e-19 | 92.4 |
| Msa0308570 | AT1G18030.1 | 27.914 | 326 | 160 | 14 | 231 | 539 | 82 | 349 | 3.31e-19 | 89.7 |
| Msa0308570 | AT3G63340.8 | 31.416 | 226 | 97 | 8 | 362 | 540 | 233 | 447 | 3.53e-19 | 92.0 |
| Msa0308570 | AT3G63340.5 | 31.416 | 226 | 97 | 8 | 362 | 540 | 233 | 447 | 3.55e-19 | 92.0 |
| Msa0308570 | AT3G63340.1 | 31.416 | 226 | 97 | 8 | 362 | 540 | 233 | 447 | 3.55e-19 | 92.0 |
| Msa0308570 | AT1G68410.4 | 28.783 | 337 | 165 | 12 | 222 | 546 | 37 | 310 | 1.25e-18 | 89.0 |
| Msa0308570 | AT1G68410.3 | 28.783 | 337 | 165 | 12 | 222 | 546 | 37 | 310 | 1.25e-18 | 89.0 |
| Msa0308570 | AT1G68410.1 | 28.783 | 337 | 165 | 12 | 222 | 546 | 37 | 310 | 1.25e-18 | 89.0 |
| Msa0308570 | AT1G68410.2 | 28.783 | 337 | 165 | 12 | 222 | 546 | 37 | 310 | 1.25e-18 | 89.0 |
| Msa0308570 | AT3G17090.2 | 30.196 | 255 | 100 | 8 | 270 | 481 | 84 | 303 | 2.22e-18 | 86.7 |
| Msa0308570 | AT3G17090.1 | 30.196 | 255 | 100 | 8 | 270 | 481 | 84 | 303 | 2.33e-18 | 87.8 |
| Msa0308570 | AT5G01700.1 | 32.456 | 228 | 122 | 10 | 270 | 478 | 29 | 243 | 2.82e-18 | 86.7 |
| Msa0308570 | AT5G01700.2 | 32.456 | 228 | 122 | 10 | 270 | 478 | 78 | 292 | 4.81e-18 | 86.7 |
| Msa0308570 | AT2G40860.3 | 30.453 | 243 | 125 | 9 | 225 | 464 | 394 | 595 | 9.89e-18 | 87.0 |
| Msa0308570 | AT3G27140.1 | 30.332 | 211 | 98 | 2 | 336 | 546 | 35 | 196 | 2.27e-17 | 82.4 |
| Msa0308570 | AT5G26010.1 | 29.592 | 294 | 146 | 12 | 272 | 543 | 75 | 329 | 2.38e-17 | 84.0 |
| Msa0308570 | AT5G02760.1 | 28.807 | 243 | 117 | 8 | 270 | 481 | 72 | 289 | 3.17e-17 | 84.0 |
| Msa0308570 | AT1G09160.2 | 28.214 | 280 | 138 | 8 | 271 | 538 | 69 | 297 | 3.21e-17 | 84.7 |
| Msa0308570 | AT1G09160.1 | 28.214 | 280 | 138 | 8 | 271 | 538 | 69 | 297 | 3.21e-17 | 84.7 |
| Msa0308570 | AT4G38520.2 | 28.745 | 247 | 114 | 6 | 270 | 481 | 81 | 300 | 3.88e-17 | 84.0 |
| Msa0308570 | AT4G38520.1 | 28.745 | 247 | 114 | 6 | 270 | 481 | 81 | 300 | 3.88e-17 | 84.0 |
| Msa0308570 | AT4G32950.1 | 31.897 | 232 | 113 | 9 | 272 | 485 | 74 | 278 | 4.25e-17 | 83.2 |
| Msa0308570 | AT3G51370.1 | 27.935 | 247 | 122 | 8 | 270 | 484 | 79 | 301 | 8.23e-17 | 82.8 |
| Msa0308570 | AT3G51370.3 | 27.935 | 247 | 122 | 8 | 270 | 484 | 79 | 301 | 8.23e-17 | 82.8 |
| Msa0308570 | AT3G63340.2 | 37.584 | 149 | 78 | 6 | 396 | 540 | 343 | 480 | 1.96e-16 | 83.6 |
| Msa0308570 | AT2G05050.1 | 30.837 | 227 | 112 | 6 | 321 | 544 | 8 | 192 | 2.05e-16 | 78.2 |
| Msa0308570 | AT3G12620.2 | 28.629 | 248 | 117 | 9 | 268 | 481 | 81 | 302 | 5.08e-16 | 80.5 |
| Msa0308570 | AT3G12620.1 | 28.629 | 248 | 117 | 9 | 268 | 481 | 81 | 302 | 5.08e-16 | 80.5 |
| Msa0308570 | AT3G06270.1 | 23.896 | 385 | 184 | 12 | 190 | 539 | 33 | 343 | 5.90e-16 | 80.1 |
| Msa0308570 | AT1G47380.1 | 28.369 | 282 | 135 | 10 | 271 | 538 | 65 | 293 | 2.36e-15 | 79.0 |
| Msa0308570 | AT5G27930.1 | 29.520 | 271 | 132 | 9 | 270 | 499 | 92 | 344 | 4.57e-15 | 77.4 |
| Msa0308570 | AT5G27930.2 | 29.520 | 271 | 132 | 9 | 270 | 499 | 92 | 344 | 4.57e-15 | 77.4 |
| Msa0308570 | AT1G17545.1 | 64.583 | 48 | 17 | 0 | 354 | 401 | 131 | 178 | 1.15e-14 | 72.8 |
| Msa0308570 | AT5G36250.1 | 30.120 | 249 | 141 | 8 | 270 | 485 | 98 | 346 | 1.37e-14 | 76.6 |
| Msa0308570 | AT4G33920.1 | 26.266 | 316 | 156 | 12 | 266 | 538 | 57 | 338 | 1.85e-14 | 75.9 |
| Msa0308570 | AT3G55050.1 | 28.629 | 248 | 117 | 10 | 268 | 481 | 82 | 303 | 5.31e-14 | 74.3 |
| Msa0308570 | AT3G55050.2 | 28.629 | 248 | 117 | 10 | 268 | 481 | 82 | 303 | 5.31e-14 | 74.3 |
| Msa0308570 | AT3G05640.2 | 34.545 | 165 | 78 | 5 | 362 | 496 | 172 | 336 | 5.76e-14 | 73.9 |
| Msa0308570 | AT3G05640.1 | 34.545 | 165 | 78 | 5 | 362 | 496 | 172 | 336 | 5.76e-14 | 73.9 |
| Msa0308570 | AT3G05640.3 | 34.545 | 165 | 78 | 5 | 362 | 496 | 172 | 336 | 5.76e-14 | 73.9 |
| Msa0308570 | AT4G03415.1 | 25.830 | 271 | 138 | 8 | 251 | 481 | 83 | 330 | 8.14e-14 | 74.3 |
| Msa0308570 | AT4G03415.3 | 25.830 | 271 | 138 | 8 | 251 | 481 | 83 | 330 | 8.14e-14 | 74.3 |
| Msa0308570 | AT4G03415.2 | 25.830 | 271 | 138 | 8 | 251 | 481 | 83 | 330 | 8.14e-14 | 74.3 |
| Msa0308570 | AT1G79630.2 | 27.969 | 261 | 140 | 8 | 270 | 482 | 28 | 288 | 9.43e-14 | 73.9 |
| Msa0308570 | AT1G79630.7 | 27.969 | 261 | 140 | 8 | 270 | 482 | 28 | 288 | 9.43e-14 | 73.9 |
| Msa0308570 | AT3G02750.2 | 36.842 | 133 | 68 | 4 | 362 | 478 | 216 | 348 | 1.07e-13 | 73.9 |
| Msa0308570 | AT3G02750.1 | 36.842 | 133 | 68 | 4 | 362 | 478 | 216 | 348 | 1.07e-13 | 73.9 |
| Msa0308570 | AT1G79630.1 | 27.969 | 261 | 140 | 8 | 270 | 482 | 98 | 358 | 2.09e-13 | 73.2 |
| Msa0308570 | AT1G79630.6 | 35.036 | 137 | 73 | 3 | 362 | 482 | 112 | 248 | 2.64e-13 | 72.4 |
| Msa0308570 | AT1G79630.3 | 35.036 | 137 | 73 | 3 | 362 | 482 | 112 | 248 | 2.64e-13 | 72.4 |
| Msa0308570 | AT1G79630.4 | 35.036 | 137 | 73 | 3 | 362 | 482 | 112 | 248 | 2.64e-13 | 72.4 |
| Msa0308570 | AT1G79630.5 | 35.036 | 137 | 73 | 3 | 362 | 482 | 112 | 248 | 2.64e-13 | 72.4 |
| Msa0308570 | AT1G79630.8 | 27.969 | 261 | 140 | 8 | 270 | 482 | 94 | 354 | 2.70e-13 | 72.8 |
| Msa0308570 | AT1G16220.1 | 26.971 | 241 | 148 | 7 | 270 | 482 | 95 | 335 | 3.71e-13 | 72.4 |
| Msa0308570 | AT4G32950.2 | 31.651 | 218 | 102 | 11 | 272 | 470 | 74 | 263 | 4.35e-12 | 67.4 |
| Msa0308570 | AT3G51370.2 | 31.847 | 157 | 75 | 4 | 360 | 484 | 60 | 216 | 6.24e-12 | 67.0 |
| Msa0308570 | AT5G36250.2 | 28.517 | 263 | 141 | 9 | 270 | 485 | 98 | 360 | 1.81e-11 | 67.0 |
Find 109 sgRNAs with CRISPR-Local
Find 190 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTAGCCAGTGATGGTTTA+TGG | 0.134314 | 2_4:+2892755 | Msa0308570:CDS |
| CTCGAAAGCGAATCCTTATT+TGG | 0.180664 | 2_4:+2892812 | Msa0308570:CDS |
| CGTTCTTCTTATGCCAAATA+AGG | 0.198782 | 2_4:-2892825 | None:intergenic |
| TCCCACTCATCCTCTCTATT+TGG | 0.201622 | 2_4:-2892017 | None:intergenic |
| ATTAAATTCCCAATTGAAAA+TGG | 0.220143 | 2_4:-2890454 | None:intergenic |
| TACTAAAGTTTGCAGTTTAC+AGG | 0.248762 | 2_4:+2893132 | Msa0308570:three_prime_UTR |
| AAGATGTTTCCGACAGTAAT+TGG | 0.277336 | 2_4:-2891576 | None:intergenic |
| TAGAAAGAAAAGAAAACTTA+TGG | 0.299763 | 2_4:+2890405 | Msa0308570:exon |
| TACGGTTTCTCGTCAGTTAT+TGG | 0.326030 | 2_4:+2891093 | Msa0308570:CDS |
| GAAACATCTTCACTCAGTTT+TGG | 0.335814 | 2_4:+2891589 | Msa0308570:CDS |
| AACCATCACTGGCTAGAATA+AGG | 0.337387 | 2_4:-2892750 | None:intergenic |
| CGCAGGACAAACTTGACTTC+TGG | 0.341715 | 2_4:-2892709 | None:intergenic |
| TATCTTTGCTACCCCTTTGA+TGG | 0.348142 | 2_4:-2892930 | None:intergenic |
| ATATCGAGTTCTTGGTGTTT+TGG | 0.349002 | 2_4:+2892082 | Msa0308570:CDS |
| TCTAGCCAGTGATGGTTTAT+GGG | 0.352985 | 2_4:+2892756 | Msa0308570:CDS |
| TTGAGCAATACTCCTCTTTA+CGG | 0.356131 | 2_4:+2891075 | Msa0308570:CDS |
| GCTGCAATCGGTTTCGAATC+AGG | 0.356383 | 2_4:-2890994 | None:intergenic |
| TAAAATCGATACTCAGCATT+TGG | 0.367949 | 2_4:+2893009 | Msa0308570:exon |
| TACAGATGGACTTCAGATAT+TGG | 0.372480 | 2_4:-2893364 | None:intergenic |
| TTAAATCCTGCTTCAATTGA+GGG | 0.383487 | 2_4:+2890556 | Msa0308570:CDS |
| TGGAATGGATATCGAGTTCT+TGG | 0.385996 | 2_4:+2892074 | Msa0308570:CDS |
| AAAGTAGATGATGTGATTGT+AGG | 0.390379 | 2_4:+2891707 | Msa0308570:CDS |
| AGTTATTGTTATTGACTTGA+AGG | 0.397151 | 2_4:+2892960 | Msa0308570:CDS |
| TGCACAACAAGCTCTGATAA+TGG | 0.410206 | 2_4:+2891045 | Msa0308570:CDS |
| TCATCAACCGTGACAGTATT+CGG | 0.411811 | 2_4:-2890871 | None:intergenic |
| TTTGATTTGGGAAGATCCTC+AGG | 0.414540 | 2_4:-2893182 | None:intergenic |
| ACGAATCACATGGAAATAAC+TGG | 0.425251 | 2_4:+2890496 | Msa0308570:CDS |
| ATTAAATCCTGCTTCAATTG+AGG | 0.426529 | 2_4:+2890555 | Msa0308570:CDS |
| TGTACCTTCAATGATGCTAA+TGG | 0.428212 | 2_4:+2891167 | Msa0308570:CDS |
| TTATAGGATTCTAGAGGATA+AGG | 0.428239 | 2_4:+2890375 | Msa0308570:five_prime_UTR |
| AATATCGAGGATGATAAGTA+TGG | 0.431471 | 2_4:+2890895 | Msa0308570:CDS |
| AACAAGCTCTGATAATGGTT+TGG | 0.436464 | 2_4:+2891050 | Msa0308570:CDS |
| GGATCAAGTTGCAGCTGAAC+CGG | 0.437558 | 2_4:+2890672 | Msa0308570:CDS |
| TGGTGAGTACTTTCTTCCAT+TGG | 0.438925 | 2_4:-2891673 | None:intergenic |
| CACAATTCGCAACTATTATG+TGG | 0.447411 | 2_4:-2891847 | None:intergenic |
| TTCCTTCCAACATTAGCTTC+AGG | 0.451054 | 2_4:-2891734 | None:intergenic |
| ATCTCATGAACCGCTGCAAT+CGG | 0.458111 | 2_4:-2891006 | None:intergenic |
| ATCTTTGCTACCCCTTTGAT+GGG | 0.460684 | 2_4:-2892929 | None:intergenic |
| TATTGGAAGGAGACAAGAAA+TGG | 0.466926 | 2_4:+2891110 | Msa0308570:CDS |
| GCAGTTGATCCAACAGTCTC+AGG | 0.467835 | 2_4:-2891800 | None:intergenic |
| AGCTGAACCGGTCTCAGAAA+TGG | 0.470063 | 2_4:+2890684 | Msa0308570:CDS |
| ACAAATATCAGTGTCTTTCG+AGG | 0.475014 | 2_4:+2890642 | Msa0308570:CDS |
| ACAAACTTGACTTCTGGATC+TGG | 0.475055 | 2_4:-2892703 | None:intergenic |
| TTGGTGTTTATGATGGACAT+GGG | 0.475996 | 2_4:+2891235 | Msa0308570:CDS |
| ATCAACTCCTTGGTCTTGCC+CGG | 0.479952 | 2_4:-2892866 | None:intergenic |
| TTTGGTGTTTATGATGGACA+TGG | 0.482453 | 2_4:+2891234 | Msa0308570:CDS |
| GTCTTGCCCGGTCGATACAT+TGG | 0.482566 | 2_4:-2892854 | None:intergenic |
| CTAGTATATTTATTTAGCCC+TGG | 0.495734 | 2_4:+2893079 | Msa0308570:three_prime_UTR |
| TCTGGATCTGGAATTATCCA+TGG | 0.502540 | 2_4:-2892691 | None:intergenic |
| ACTAGTGACTGAGAAATACT+TGG | 0.512059 | 2_4:-2893061 | None:intergenic |
| TTGGCAGTTTCAAGATCCAT+AGG | 0.513704 | 2_4:+2892101 | Msa0308570:CDS |
| TCAAGAACCATTTCTGAGAC+CGG | 0.516467 | 2_4:-2890691 | None:intergenic |
| TGCCTTATTCTAGCCAGTGA+TGG | 0.520110 | 2_4:+2892748 | Msa0308570:CDS |
| GACGGAACCAATGTATCGAC+CGG | 0.523382 | 2_4:+2892847 | Msa0308570:CDS |
| CACATCCCATAAACCATCAC+TGG | 0.524834 | 2_4:-2892761 | None:intergenic |
| TCTGCAGCATAATGAGCTGC+AGG | 0.526200 | 2_4:-2892889 | None:intergenic |
| GATGGACTTCAGATATTGGC+AGG | 0.527479 | 2_4:-2893360 | None:intergenic |
| ACTCTTGCTCCTGAGACTGT+TGG | 0.528725 | 2_4:+2891791 | Msa0308570:CDS |
| CACATAATAGTTGCGAATTG+TGG | 0.532195 | 2_4:+2891848 | Msa0308570:CDS |
| GAGCTGCAGGATCAACTCCT+TGG | 0.534092 | 2_4:-2892876 | None:intergenic |
| AAGACAATTGGCAAGACCAA+TGG | 0.541489 | 2_4:+2891657 | Msa0308570:CDS |
| GGAGTTCCTGAAGCTAATGT+TGG | 0.549672 | 2_4:+2891728 | Msa0308570:CDS |
| GGATACCTCGGTTTAAGATA+AGG | 0.551792 | 2_4:+2893154 | Msa0308570:three_prime_UTR |
| ACTAAAGTTTGCAGTTTACA+GGG | 0.553055 | 2_4:+2893133 | Msa0308570:three_prime_UTR |
| GGATAGAAGCTGCAGGAGGA+AGG | 0.556808 | 2_4:+2892042 | Msa0308570:CDS |
| GTTTCTCGTCAGTTATTGGA+AGG | 0.557259 | 2_4:+2891097 | Msa0308570:CDS |
| TCATCCATTAGCATCATTGA+AGG | 0.561946 | 2_4:-2891171 | None:intergenic |
| TGGTGTTTATGATGGACATG+GGG | 0.565250 | 2_4:+2891236 | Msa0308570:CDS |
| GGAAGGATCATACAATGGAA+TGG | 0.568678 | 2_4:+2892059 | Msa0308570:CDS |
| CTGTTTGCAGCCAAATAGAG+AGG | 0.569162 | 2_4:+2892007 | Msa0308570:intron |
| ATAGAGAGGATGAGTGGGAA+AGG | 0.569330 | 2_4:+2892021 | Msa0308570:CDS |
| GTGATAAATACTTGAAACCA+TGG | 0.570632 | 2_4:+2892674 | Msa0308570:CDS |
| GACTGTTGGATCAACTGCAC+TGG | 0.576326 | 2_4:+2891805 | Msa0308570:CDS |
| TGGGAAAGGATAGAAGCTGC+AGG | 0.580421 | 2_4:+2892035 | Msa0308570:CDS |
| TATGGAGGAAATAAGTTCGA+CGG | 0.581142 | 2_4:+2890423 | Msa0308570:exon |
| ACTGACGAGAAACCGTAAAG+AGG | 0.581501 | 2_4:-2891087 | None:intergenic |
| TGCAGTTTACAGGGATACCT+CGG | 0.583022 | 2_4:+2893142 | Msa0308570:three_prime_UTR |
| TGACAACCCTCAATTGAAGC+AGG | 0.583524 | 2_4:-2890562 | None:intergenic |
| AAAGAAAAGAAAACTTATGG+AGG | 0.585164 | 2_4:+2890408 | Msa0308570:exon |
| AAAGCATATACCGTTACAGA+TGG | 0.592358 | 2_4:-2893378 | Msa0308580:three_prime_UTR |
| CATAGGTTGCCAATTACTGT+CGG | 0.596552 | 2_4:+2891567 | Msa0308570:intron |
| GCCAAATAGAGAGGATGAGT+GGG | 0.602002 | 2_4:+2892016 | Msa0308570:intron |
| ACTGATATTTGTTGATGTTG+CGG | 0.614674 | 2_4:-2890631 | None:intergenic |
| TCAAGAGCGGTCTTGTGTCG+AGG | 0.616228 | 2_4:+2891875 | Msa0308570:CDS |
| AGCCAAATAGAGAGGATGAG+TGG | 0.617555 | 2_4:+2892015 | Msa0308570:intron |
| TTCCTGAAGCTAATGTTGGA+AGG | 0.619691 | 2_4:+2891732 | Msa0308570:CDS |
| GAAGATATAAGTATCTCAGA+TGG | 0.623200 | 2_4:+2890970 | Msa0308570:CDS |
| TCTGTTGGAAGTGGTGAAGA+CGG | 0.623681 | 2_4:+2890592 | Msa0308570:CDS |
| TGAGGAGTTCAAGACAGCTA+AGG | 0.625755 | 2_4:+2890738 | Msa0308570:CDS |
| GTATCGACCGGGCAAGACCA+AGG | 0.626468 | 2_4:+2892859 | Msa0308570:CDS |
| TATCTGAAGTCCATCTGTAA+CGG | 0.626706 | 2_4:+2893368 | Msa0308570:three_prime_UTR |
| GAATGAGCTAGTGTCGAACA+CGG | 0.636472 | 2_4:+2890921 | Msa0308570:CDS |
| CACGGTTGATGATAATATCG+AGG | 0.649591 | 2_4:+2890882 | Msa0308570:CDS |
| CAGGAGGAAGGATCATACAA+TGG | 0.650363 | 2_4:+2892054 | Msa0308570:CDS |
| GGTGTTTATGATGGACATGG+GGG | 0.650441 | 2_4:+2891237 | Msa0308570:CDS |
| ACGGAACCAATGTATCGACC+GGG | 0.653647 | 2_4:+2892848 | Msa0308570:CDS |
| GAACACACCGAATACTGTCA+CGG | 0.654943 | 2_4:+2890864 | Msa0308570:CDS |
| GCTACTAACAGAAGATTGCG+AGG | 0.655666 | 2_4:-2890785 | None:intergenic |
| ATTTGGCATAAGAAGAACGA+CGG | 0.655741 | 2_4:+2892829 | Msa0308570:CDS |
| AAGTGGTGAAGACGGTGACA+CGG | 0.657292 | 2_4:+2890600 | Msa0308570:CDS |
| TGATACCTTATCTTAAACCG+AGG | 0.662660 | 2_4:-2893159 | None:intergenic |
| AGTGTCTTTCGAGGTTAACG+AGG | 0.672111 | 2_4:+2890651 | Msa0308570:CDS |
| TGATTCGAAACCGATTGCAG+CGG | 0.678606 | 2_4:+2890996 | Msa0308570:CDS |
| GTCAACAGTGACGAATCACA+TGG | 0.678625 | 2_4:+2890486 | Msa0308570:CDS |
| TTAAGATAAGGTATCACCTG+AGG | 0.687782 | 2_4:+2893166 | Msa0308570:three_prime_UTR |
| CGGATCTGAGTCAAGTACTG+AGG | 0.702686 | 2_4:+2891766 | Msa0308570:CDS |
| GAAAGGATAGAAGCTGCAGG+AGG | 0.708767 | 2_4:+2892038 | Msa0308570:CDS |
| GTTGGAAGGAACAGTAACGA+CGG | 0.717998 | 2_4:+2891746 | Msa0308570:CDS |
| GAATTGTGGTGATTCAAGAG+CGG | 0.718429 | 2_4:+2891862 | Msa0308570:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAAAAAGAAACGAATTTTTT+CGG | - | chr2_4:2891331-2891350 | None:intergenic | 15.0% |
| !! | TTAAGAGCAATAATATTTAT+TGG | + | chr2_4:2891456-2891475 | Msa0308570:intron | 15.0% |
| !! | ATTATGTTAAGAAAACAATA+TGG | - | chr2_4:2892615-2892634 | None:intergenic | 15.0% |
| !!! | ATAATGTAGAATTTTGATTT+GGG | - | chr2_4:2893197-2893216 | None:intergenic | 15.0% |
| !!! | AATAATGTAGAATTTTGATT+TGG | - | chr2_4:2893198-2893217 | None:intergenic | 15.0% |
| !! | TTTAAAAAAAATAAGGTTAC+AGG | - | chr2_4:2893279-2893298 | None:intergenic | 15.0% |
| !! | TAAAAATTATAGGATTCTAG+AGG | + | chr2_4:2890369-2890388 | Msa0308570:five_prime_UTR | 20.0% |
| !! | TAGAAAGAAAAGAAAACTTA+TGG | + | chr2_4:2890405-2890424 | Msa0308570:exon | 20.0% |
| !! | ATTAAATTCCCAATTGAAAA+TGG | - | chr2_4:2890457-2890476 | None:intergenic | 20.0% |
| !!! | TCACAAATAAATTTGTTTAG+TGG | + | chr2_4:2892308-2892327 | Msa0308570:intron | 20.0% |
| !!! | AAATAAATTTGTTTAGTGGA+TGG | + | chr2_4:2892312-2892331 | Msa0308570:intron | 20.0% |
| !! | AAATATACACTTGAAAATTG+TGG | - | chr2_4:2892415-2892434 | None:intergenic | 20.0% |
| !!! | TATATGTTACTTACATTTTG+TGG | - | chr2_4:2892537-2892556 | None:intergenic | 20.0% |
| ! | AAAGAAAAGAAAACTTATGG+AGG | + | chr2_4:2890408-2890427 | Msa0308570:exon | 25.0% |
| ! | TTTATTTCAGAGAGAGAAAT+AGG | + | chr2_4:2891413-2891432 | Msa0308570:intron | 25.0% |
| !!! | ATTTATTGGTTTTTCCAGAA+AGG | + | chr2_4:2891470-2891489 | Msa0308570:intron | 25.0% |
| !!! | CCAATTGTCTTTTTCATTTT+CGG | - | chr2_4:2891648-2891667 | None:intergenic | 25.0% |
| !!! | ATCTACTTTTTGAAAGCAAT+TGG | - | chr2_4:2891696-2891715 | None:intergenic | 25.0% |
| ! | AATTATGTACCTGTATAAGT+TGG | - | chr2_4:2892163-2892182 | None:intergenic | 25.0% |
| ! | TGAATTTGAATTACGTTATG+TGG | + | chr2_4:2892471-2892490 | Msa0308570:intron | 25.0% |
| ! | ACAAAAGACATAAATTTCGA+TGG | - | chr2_4:2892575-2892594 | None:intergenic | 25.0% |
| !!! | AGTTATTGTTATTGACTTGA+AGG | + | chr2_4:2892960-2892979 | Msa0308570:CDS | 25.0% |
| ! | CCTTATGAAAAAAATATCCA+GGG | - | chr2_4:2893099-2893118 | None:intergenic | 25.0% |
| !!! | CCTGGATATTTTTTTCATAA+GGG | + | chr2_4:2893097-2893116 | Msa0308570:three_prime_UTR | 25.0% |
| ! | TTATAGGATTCTAGAGGATA+AGG | + | chr2_4:2890375-2890394 | Msa0308570:five_prime_UTR | 30.0% |
| ATTAAATCCTGCTTCAATTG+AGG | + | chr2_4:2890555-2890574 | Msa0308570:CDS | 30.0% | |
| TTAAATCCTGCTTCAATTGA+GGG | + | chr2_4:2890556-2890575 | Msa0308570:CDS | 30.0% | |
| ! | ACTGATATTTGTTGATGTTG+CGG | - | chr2_4:2890634-2890653 | None:intergenic | 30.0% |
| !!! | CAGTTTTGAAAGAAATGATG+AGG | + | chr2_4:2890720-2890739 | Msa0308570:CDS | 30.0% |
| AATATCGAGGATGATAAGTA+TGG | + | chr2_4:2890895-2890914 | Msa0308570:CDS | 30.0% | |
| GAAGATATAAGTATCTCAGA+TGG | + | chr2_4:2890970-2890989 | Msa0308570:CDS | 30.0% | |
| ! | CTTTTGTGTTTTCATTCACA+TGG | - | chr2_4:2891197-2891216 | None:intergenic | 30.0% |
| !!! | CACTTTTTTGGTGTTTATGA+TGG | + | chr2_4:2891228-2891247 | Msa0308570:CDS | 30.0% |
| AATTGACAGGAAGGAATTTA+AGG | - | chr2_4:2891275-2891294 | None:intergenic | 30.0% | |
| ATCACACAAACTTGGTAAAT+GGG | - | chr2_4:2891542-2891561 | None:intergenic | 30.0% | |
| CCGAAAATGAAAAAGACAAT+TGG | + | chr2_4:2891645-2891664 | Msa0308570:CDS | 30.0% | |
| AAAGTAGATGATGTGATTGT+AGG | + | chr2_4:2891707-2891726 | Msa0308570:CDS | 30.0% | |
| !! | ACTTTTTGGTCAATAGACAA+TGG | - | chr2_4:2891914-2891933 | None:intergenic | 30.0% |
| TGTCTATTGACCAAAAAGTA+AGG | + | chr2_4:2891915-2891934 | Msa0308570:intron | 30.0% | |
| !! | GAAACAAATGCCTTACTTTT+TGG | - | chr2_4:2891928-2891947 | None:intergenic | 30.0% |
| ! | TTGTTTCACAATTTGTTTGC+TGG | + | chr2_4:2891941-2891960 | Msa0308570:intron | 30.0% |
| TTATCACTACCAACTTATAC+AGG | + | chr2_4:2892151-2892170 | Msa0308570:intron | 30.0% | |
| GATGGTTAACGAATATAACA+AGG | - | chr2_4:2892515-2892534 | None:intergenic | 30.0% | |
| !! | TGTTACTTACATTTTGTGGA+TGG | - | chr2_4:2892533-2892552 | None:intergenic | 30.0% |
| GTGATAAATACTTGAAACCA+TGG | + | chr2_4:2892674-2892693 | Msa0308570:CDS | 30.0% | |
| TATCAAAAATTGCCCATCAA+AGG | + | chr2_4:2892917-2892936 | Msa0308570:CDS | 30.0% | |
| ATCAAAAATTGCCCATCAAA+GGG | + | chr2_4:2892918-2892937 | Msa0308570:CDS | 30.0% | |
| TAAAATCGATACTCAGCATT+TGG | + | chr2_4:2893009-2893028 | Msa0308570:exon | 30.0% | |
| CTAGTATATTTATTTAGCCC+TGG | + | chr2_4:2893079-2893098 | Msa0308570:three_prime_UTR | 30.0% | |
| !!! | CCCTGGATATTTTTTTCATA+AGG | + | chr2_4:2893096-2893115 | Msa0308570:three_prime_UTR | 30.0% |
| CCCTTATGAAAAAAATATCC+AGG | - | chr2_4:2893100-2893119 | None:intergenic | 30.0% | |
| TACTAAAGTTTGCAGTTTAC+AGG | + | chr2_4:2893132-2893151 | Msa0308570:three_prime_UTR | 30.0% | |
| ACTAAAGTTTGCAGTTTACA+GGG | + | chr2_4:2893133-2893152 | Msa0308570:three_prime_UTR | 30.0% | |
| TATGGAGGAAATAAGTTCGA+CGG | + | chr2_4:2890423-2890442 | Msa0308570:exon | 35.0% | |
| !!! | TTGCAGTGCCATTTTCAATT+GGG | + | chr2_4:2890446-2890465 | Msa0308570:CDS | 35.0% |
| ACGAATCACATGGAAATAAC+TGG | + | chr2_4:2890496-2890515 | Msa0308570:CDS | 35.0% | |
| ACAAATATCAGTGTCTTTCG+AGG | + | chr2_4:2890642-2890661 | Msa0308570:CDS | 35.0% | |
| ! | TAGCAAAAGCAGTCCTTTTA+CGG | + | chr2_4:2890804-2890823 | Msa0308570:CDS | 35.0% |
| !! | AACAAGCTCTGATAATGGTT+TGG | + | chr2_4:2891050-2891069 | Msa0308570:CDS | 35.0% |
| TTGAGCAATACTCCTCTTTA+CGG | + | chr2_4:2891075-2891094 | Msa0308570:CDS | 35.0% | |
| TATTGGAAGGAGACAAGAAA+TGG | + | chr2_4:2891110-2891129 | Msa0308570:CDS | 35.0% | |
| ! | GAAGGTACATGAAAAAGTTG+AGG | - | chr2_4:2891156-2891175 | None:intergenic | 35.0% |
| TGTACCTTCAATGATGCTAA+TGG | + | chr2_4:2891167-2891186 | Msa0308570:CDS | 35.0% | |
| TCATCCATTAGCATCATTGA+AGG | - | chr2_4:2891174-2891193 | None:intergenic | 35.0% | |
| ! | AACACCAAAAAAGTGTGCTA+GGG | - | chr2_4:2891223-2891242 | None:intergenic | 35.0% |
| ! | AAACACCAAAAAAGTGTGCT+AGG | - | chr2_4:2891224-2891243 | None:intergenic | 35.0% |
| !! | TTTGGTGTTTATGATGGACA+TGG | + | chr2_4:2891234-2891253 | Msa0308570:CDS | 35.0% |
| !! | TTGGTGTTTATGATGGACAT+GGG | + | chr2_4:2891235-2891254 | Msa0308570:CDS | 35.0% |
| AAGTGACAGTTAAAAAGGAG+CGG | - | chr2_4:2891305-2891324 | None:intergenic | 35.0% | |
| GGCAAAAGTGACAGTTAAAA+AGG | - | chr2_4:2891310-2891329 | None:intergenic | 35.0% | |
| !! | TTGGTTTTTCCAGAAAGGAA+CGG | + | chr2_4:2891475-2891494 | Msa0308570:intron | 35.0% |
| AAAGGAACGGAGAGAATATA+CGG | + | chr2_4:2891488-2891507 | Msa0308570:intron | 35.0% | |
| CATCACACAAACTTGGTAAA+TGG | - | chr2_4:2891543-2891562 | None:intergenic | 35.0% | |
| CATTTACCAAGTTTGTGTGA+TGG | + | chr2_4:2891541-2891560 | Msa0308570:intron | 35.0% | |
| AAGATGTTTCCGACAGTAAT+TGG | - | chr2_4:2891579-2891598 | None:intergenic | 35.0% | |
| ! | GAAACATCTTCACTCAGTTT+TGG | + | chr2_4:2891589-2891608 | Msa0308570:CDS | 35.0% |
| CACAATTCGCAACTATTATG+TGG | - | chr2_4:2891850-2891869 | None:intergenic | 35.0% | |
| CACATAATAGTTGCGAATTG+TGG | + | chr2_4:2891848-2891867 | Msa0308570:CDS | 35.0% | |
| !!! | ATATCGAGTTCTTGGTGTTT+TGG | + | chr2_4:2892082-2892101 | Msa0308570:CDS | 35.0% |
| TGCAGTAAAACACATACCTA+TGG | - | chr2_4:2892120-2892139 | None:intergenic | 35.0% | |
| ! | TTTGTTTAGTGGATGGTCAA+TGG | + | chr2_4:2892319-2892338 | Msa0308570:intron | 35.0% |
| GTTGACGATGTTCAAAATTG+TGG | - | chr2_4:2892393-2892412 | None:intergenic | 35.0% | |
| TTCAAGTATTTATCACCTGG+TGG | - | chr2_4:2892670-2892689 | None:intergenic | 35.0% | |
| ! | GGTTTCAAGTATTTATCACC+TGG | - | chr2_4:2892673-2892692 | None:intergenic | 35.0% |
| CGTTCTTCTTATGCCAAATA+AGG | - | chr2_4:2892828-2892847 | None:intergenic | 35.0% | |
| ATTTGGCATAAGAAGAACGA+CGG | + | chr2_4:2892829-2892848 | Msa0308570:CDS | 35.0% | |
| TCAAAAATTGCCCATCAAAG+GGG | + | chr2_4:2892919-2892938 | Msa0308570:CDS | 35.0% | |
| ACTAGTGACTGAGAAATACT+TGG | - | chr2_4:2893064-2893083 | None:intergenic | 35.0% | |
| TGATACCTTATCTTAAACCG+AGG | - | chr2_4:2893162-2893181 | None:intergenic | 35.0% | |
| ! | TTAAGATAAGGTATCACCTG+AGG | + | chr2_4:2893166-2893185 | Msa0308570:three_prime_UTR | 35.0% |
| ! | TACAGATGGACTTCAGATAT+TGG | - | chr2_4:2893367-2893386 | None:intergenic | 35.0% |
| ! | TATCTGAAGTCCATCTGTAA+CGG | + | chr2_4:2893368-2893387 | Msa0308570:three_prime_UTR | 35.0% |
| AAAGCATATACCGTTACAGA+TGG | - | chr2_4:2893381-2893400 | Msa0308580:three_prime_UTR | 35.0% | |
| !!! | GTTGCAGTGCCATTTTCAAT+TGG | + | chr2_4:2890445-2890464 | Msa0308570:CDS | 40.0% |
| ! | GGTTGTCAGTCTTTTTCTGT+TGG | + | chr2_4:2890577-2890596 | Msa0308570:CDS | 40.0% |
| ! | CAGTCTTTTTCTGTTGGAAG+TGG | + | chr2_4:2890583-2890602 | Msa0308570:CDS | 40.0% |
| !! | TCAAGAACCATTTCTGAGAC+CGG | - | chr2_4:2890694-2890713 | None:intergenic | 40.0% |
| ! | AGCAAAAGCAGTCCTTTTAC+GGG | + | chr2_4:2890805-2890824 | Msa0308570:CDS | 40.0% |
| TCATCAACCGTGACAGTATT+CGG | - | chr2_4:2890874-2890893 | None:intergenic | 40.0% | |
| !! | CACGGTTGATGATAATATCG+AGG | + | chr2_4:2890882-2890901 | Msa0308570:CDS | 40.0% |
| ! | TGCACAACAAGCTCTGATAA+TGG | + | chr2_4:2891045-2891064 | Msa0308570:CDS | 40.0% |
| TACGGTTTCTCGTCAGTTAT+TGG | + | chr2_4:2891093-2891112 | Msa0308570:CDS | 40.0% | |
| GTTTCTCGTCAGTTATTGGA+AGG | + | chr2_4:2891097-2891116 | Msa0308570:CDS | 40.0% | |
| !!! | GATTCCCTAGCACACTTTTT+TGG | + | chr2_4:2891216-2891235 | Msa0308570:CDS | 40.0% |
| !! | TGGTGTTTATGATGGACATG+GGG | + | chr2_4:2891236-2891255 | Msa0308570:CDS | 40.0% |
| GAGAGAGAAATAGGTAGACT+TGG | + | chr2_4:2891422-2891441 | Msa0308570:intron | 40.0% | |
| ATATTCTCTCCGTTCCTTTC+TGG | - | chr2_4:2891487-2891506 | None:intergenic | 40.0% | |
| ATGAAGCCATCACACAAACT+TGG | - | chr2_4:2891550-2891569 | None:intergenic | 40.0% | |
| AGTTTGTGTGATGGCTTCAT+AGG | + | chr2_4:2891550-2891569 | Msa0308570:intron | 40.0% | |
| CATAGGTTGCCAATTACTGT+CGG | + | chr2_4:2891567-2891586 | Msa0308570:intron | 40.0% | |
| !!! | TCTTCACTCAGTTTTGGTTG+AGG | + | chr2_4:2891595-2891614 | Msa0308570:CDS | 40.0% |
| AAGACAATTGGCAAGACCAA+TGG | + | chr2_4:2891657-2891676 | Msa0308570:CDS | 40.0% | |
| TGGTGAGTACTTTCTTCCAT+TGG | - | chr2_4:2891676-2891695 | None:intergenic | 40.0% | |
| TTCCTGAAGCTAATGTTGGA+AGG | + | chr2_4:2891732-2891751 | Msa0308570:CDS | 40.0% | |
| ! | TTCCTTCCAACATTAGCTTC+AGG | - | chr2_4:2891737-2891756 | None:intergenic | 40.0% |
| GAATTGTGGTGATTCAAGAG+CGG | + | chr2_4:2891862-2891881 | Msa0308570:CDS | 40.0% | |
| ! | TTGTTTGCTGGACTCTTAGA+AGG | + | chr2_4:2891953-2891972 | Msa0308570:intron | 40.0% |
| GGAAGGATCATACAATGGAA+TGG | + | chr2_4:2892059-2892078 | Msa0308570:CDS | 40.0% | |
| TGGAATGGATATCGAGTTCT+TGG | + | chr2_4:2892074-2892093 | Msa0308570:CDS | 40.0% | |
| TTGGCAGTTTCAAGATCCAT+AGG | + | chr2_4:2892101-2892120 | Msa0308570:CDS | 40.0% | |
| ! | TTTTCTTCATTTCCACCACC+AGG | + | chr2_4:2892652-2892671 | Msa0308570:intron | 40.0% |
| AAGTATTTATCACCTGGTGG+TGG | - | chr2_4:2892667-2892686 | None:intergenic | 40.0% | |
| ! | TCTGGATCTGGAATTATCCA+TGG | - | chr2_4:2892694-2892713 | None:intergenic | 40.0% |
| ACAAACTTGACTTCTGGATC+TGG | - | chr2_4:2892706-2892725 | None:intergenic | 40.0% | |
| ! | AACCATCACTGGCTAGAATA+AGG | - | chr2_4:2892753-2892772 | None:intergenic | 40.0% |
| TTCTAGCCAGTGATGGTTTA+TGG | + | chr2_4:2892755-2892774 | Msa0308570:CDS | 40.0% | |
| TCTAGCCAGTGATGGTTTAT+GGG | + | chr2_4:2892756-2892775 | Msa0308570:CDS | 40.0% | |
| CTCGAAAGCGAATCCTTATT+TGG | + | chr2_4:2892812-2892831 | Msa0308570:CDS | 40.0% | |
| ATCTTTGCTACCCCTTTGAT+GGG | - | chr2_4:2892932-2892951 | None:intergenic | 40.0% | |
| TATCTTTGCTACCCCTTTGA+TGG | - | chr2_4:2892933-2892952 | None:intergenic | 40.0% | |
| ! | GGATACCTCGGTTTAAGATA+AGG | + | chr2_4:2893154-2893173 | Msa0308570:three_prime_UTR | 40.0% |
| !! | TTTGATTTGGGAAGATCCTC+AGG | - | chr2_4:2893185-2893204 | None:intergenic | 40.0% |
| GTCAACAGTGACGAATCACA+TGG | + | chr2_4:2890486-2890505 | Msa0308570:CDS | 45.0% | |
| TGACAACCCTCAATTGAAGC+AGG | - | chr2_4:2890565-2890584 | None:intergenic | 45.0% | |
| TCTGTTGGAAGTGGTGAAGA+CGG | + | chr2_4:2890592-2890611 | Msa0308570:CDS | 45.0% | |
| AGTGTCTTTCGAGGTTAACG+AGG | + | chr2_4:2890651-2890670 | Msa0308570:CDS | 45.0% | |
| TGAGGAGTTCAAGACAGCTA+AGG | + | chr2_4:2890738-2890757 | Msa0308570:CDS | 45.0% | |
| GCTACTAACAGAAGATTGCG+AGG | - | chr2_4:2890788-2890807 | None:intergenic | 45.0% | |
| ! | GCAAAAGCAGTCCTTTTACG+GGG | + | chr2_4:2890806-2890825 | Msa0308570:CDS | 45.0% |
| ! | CAAAAGCAGTCCTTTTACGG+GGG | + | chr2_4:2890807-2890826 | Msa0308570:CDS | 45.0% |
| GAACACACCGAATACTGTCA+CGG | + | chr2_4:2890864-2890883 | Msa0308570:CDS | 45.0% | |
| ! | GAATGAGCTAGTGTCGAACA+CGG | + | chr2_4:2890921-2890940 | Msa0308570:CDS | 45.0% |
| TGATTCGAAACCGATTGCAG+CGG | + | chr2_4:2890996-2891015 | Msa0308570:CDS | 45.0% | |
| ATCTCATGAACCGCTGCAAT+CGG | - | chr2_4:2891009-2891028 | None:intergenic | 45.0% | |
| ACTGACGAGAAACCGTAAAG+AGG | - | chr2_4:2891090-2891109 | None:intergenic | 45.0% | |
| !! | GGTGTTTATGATGGACATGG+GGG | + | chr2_4:2891237-2891256 | Msa0308570:CDS | 45.0% |
| GGAGAGAGTAATTGACAGGA+AGG | - | chr2_4:2891284-2891303 | None:intergenic | 45.0% | |
| GGAGTTCCTGAAGCTAATGT+TGG | + | chr2_4:2891728-2891747 | Msa0308570:CDS | 45.0% | |
| GTTGGAAGGAACAGTAACGA+CGG | + | chr2_4:2891746-2891765 | Msa0308570:CDS | 45.0% | |
| AAGGTGAAGTGATCTGATGC+AGG | + | chr2_4:2891972-2891991 | Msa0308570:intron | 45.0% | |
| CTCTCTATTTGGCTGCAAAC+AGG | - | chr2_4:2892009-2892028 | None:intergenic | 45.0% | |
| CTGTTTGCAGCCAAATAGAG+AGG | + | chr2_4:2892007-2892026 | Msa0308570:intron | 45.0% | |
| AGCCAAATAGAGAGGATGAG+TGG | + | chr2_4:2892015-2892034 | Msa0308570:intron | 45.0% | |
| GCCAAATAGAGAGGATGAGT+GGG | + | chr2_4:2892016-2892035 | Msa0308570:intron | 45.0% | |
| TCCCACTCATCCTCTCTATT+TGG | - | chr2_4:2892020-2892039 | None:intergenic | 45.0% | |
| ATAGAGAGGATGAGTGGGAA+AGG | + | chr2_4:2892021-2892040 | Msa0308570:CDS | 45.0% | |
| CAGGAGGAAGGATCATACAA+TGG | + | chr2_4:2892054-2892073 | Msa0308570:CDS | 45.0% | |
| ACAACTCATTGACCATCCAC+TGG | + | chr2_4:2892357-2892376 | Msa0308570:intron | 45.0% | |
| TTGTGGTTGATTGTGTCCAG+TGG | - | chr2_4:2892376-2892395 | None:intergenic | 45.0% | |
| ! | TGCCTTATTCTAGCCAGTGA+TGG | + | chr2_4:2892748-2892767 | Msa0308570:CDS | 45.0% |
| CACATCCCATAAACCATCAC+TGG | - | chr2_4:2892764-2892783 | None:intergenic | 45.0% | |
| TGCAGTTTACAGGGATACCT+CGG | + | chr2_4:2893142-2893161 | Msa0308570:three_prime_UTR | 45.0% | |
| ! | GATGGACTTCAGATATTGGC+AGG | - | chr2_4:2893363-2893382 | None:intergenic | 45.0% |
| !!! | TACAAATTTTAAAAAAAATA+AGG | - | chr2_4:2893286-2893305 | None:intergenic | 5.0% |
| AAGTGGTGAAGACGGTGACA+CGG | + | chr2_4:2890600-2890619 | Msa0308570:CDS | 50.0% | |
| ! | GGATCAAGTTGCAGCTGAAC+CGG | + | chr2_4:2890672-2890691 | Msa0308570:CDS | 50.0% |
| AGCTGAACCGGTCTCAGAAA+TGG | + | chr2_4:2890684-2890703 | Msa0308570:CDS | 50.0% | |
| ! | GCTGCAATCGGTTTCGAATC+AGG | - | chr2_4:2890997-2891016 | None:intergenic | 50.0% |
| GAGCGGAGAGAGTAATTGAC+AGG | - | chr2_4:2891288-2891307 | None:intergenic | 50.0% | |
| ! | CGGATCTGAGTCAAGTACTG+AGG | + | chr2_4:2891766-2891785 | Msa0308570:CDS | 50.0% |
| ACTCTTGCTCCTGAGACTGT+TGG | + | chr2_4:2891791-2891810 | Msa0308570:CDS | 50.0% | |
| GCAGTTGATCCAACAGTCTC+AGG | - | chr2_4:2891803-2891822 | None:intergenic | 50.0% | |
| GACTGTTGGATCAACTGCAC+TGG | + | chr2_4:2891805-2891824 | Msa0308570:CDS | 50.0% | |
| TGGGAAAGGATAGAAGCTGC+AGG | + | chr2_4:2892035-2892054 | Msa0308570:CDS | 50.0% | |
| GAAAGGATAGAAGCTGCAGG+AGG | + | chr2_4:2892038-2892057 | Msa0308570:CDS | 50.0% | |
| GGTTGATTGTGTCCAGTGGA+TGG | - | chr2_4:2892372-2892391 | None:intergenic | 50.0% | |
| CGCAGGACAAACTTGACTTC+TGG | - | chr2_4:2892712-2892731 | None:intergenic | 50.0% | |
| !!! | ACTCGTCGTTTTTCTCTCGC+AGG | - | chr2_4:2892729-2892748 | None:intergenic | 50.0% |
| ! | GACGGAACCAATGTATCGAC+CGG | + | chr2_4:2892847-2892866 | Msa0308570:CDS | 50.0% |
| ! | ACGGAACCAATGTATCGACC+GGG | + | chr2_4:2892848-2892867 | Msa0308570:CDS | 50.0% |
| !! | ATCAACTCCTTGGTCTTGCC+CGG | - | chr2_4:2892869-2892888 | None:intergenic | 50.0% |
| TCTGCAGCATAATGAGCTGC+AGG | - | chr2_4:2892892-2892911 | None:intergenic | 50.0% | |
| ACTGCAGACTCCCCCGTAAA+AGG | - | chr2_4:2890820-2890839 | None:intergenic | 55.0% | |
| ! | TGATGGACATGGGGGAAGTC+AGG | + | chr2_4:2891245-2891264 | Msa0308570:CDS | 55.0% |
| ! | TCAAGAGCGGTCTTGTGTCG+AGG | + | chr2_4:2891875-2891894 | Msa0308570:CDS | 55.0% |
| GGATAGAAGCTGCAGGAGGA+AGG | + | chr2_4:2892042-2892061 | Msa0308570:CDS | 55.0% | |
| GTCTTGCCCGGTCGATACAT+TGG | - | chr2_4:2892857-2892876 | None:intergenic | 55.0% | |
| GAGCTGCAGGATCAACTCCT+TGG | - | chr2_4:2892879-2892898 | None:intergenic | 55.0% | |
| ! | GTATCGACCGGGCAAGACCA+AGG | + | chr2_4:2892859-2892878 | Msa0308570:CDS | 60.0% |
| CGGGGGAGTCTGCAGTTTCG+AGG | + | chr2_4:2890824-2890843 | Msa0308570:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_4 | gene | 2890364 | 2893417 | 2890364 | ID=Msa0308570;Name=Msa0308570 |
| chr2_4 | mRNA | 2890364 | 2893417 | 2890364 | ID=Msa0308570-mRNA-1;Parent=Msa0308570;Name=Msa0308570-mRNA-1;_AED=0.08;_eAED=0.08;_QI=60|1|1|1|1|1|4|406|548 |
| chr2_4 | exon | 2890364 | 2891266 | 2890364 | ID=Msa0308570-mRNA-1:exon:819;Parent=Msa0308570-mRNA-1 |
| chr2_4 | exon | 2891572 | 2891931 | 2891572 | ID=Msa0308570-mRNA-1:exon:820;Parent=Msa0308570-mRNA-1 |
| chr2_4 | exon | 2892017 | 2892122 | 2892017 | ID=Msa0308570-mRNA-1:exon:821;Parent=Msa0308570-mRNA-1 |
| chr2_4 | exon | 2892674 | 2893417 | 2892674 | ID=Msa0308570-mRNA-1:exon:822;Parent=Msa0308570-mRNA-1 |
| chr2_4 | five_prime_UTR | 2890364 | 2890423 | 2890364 | ID=Msa0308570-mRNA-1:five_prime_utr;Parent=Msa0308570-mRNA-1 |
| chr2_4 | CDS | 2890424 | 2891266 | 2890424 | ID=Msa0308570-mRNA-1:cds;Parent=Msa0308570-mRNA-1 |
| chr2_4 | CDS | 2891572 | 2891931 | 2891572 | ID=Msa0308570-mRNA-1:cds;Parent=Msa0308570-mRNA-1 |
| chr2_4 | CDS | 2892017 | 2892122 | 2892017 | ID=Msa0308570-mRNA-1:cds;Parent=Msa0308570-mRNA-1 |
| chr2_4 | CDS | 2892674 | 2893011 | 2892674 | ID=Msa0308570-mRNA-1:cds;Parent=Msa0308570-mRNA-1 |
| chr2_4 | three_prime_UTR | 2893012 | 2893417 | 2893012 | ID=Msa0308570-mRNA-1:three_prime_utr;Parent=Msa0308570-mRNA-1 |
| Gene Sequence |
| Protein sequence |
