AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1437980

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1437980 MtrunA17_Chr1g0198681 96.519 316 10 1 1 315 1 316 0.0 627
Msa1437980 MtrunA17_Chr5g0422481 57.680 319 112 8 9 315 17 324 3.20e-116 349
Msa1437980 MtrunA17_Chr2g0282601 30.717 293 189 10 37 323 28 312 1.01e-33 130
Msa1437980 MtrunA17_Chr7g0236881 30.000 290 159 15 32 304 22 284 1.59e-17 83.6
Msa1437980 MtrunA17_Chr7g0263591 26.962 293 180 9 40 319 36 307 1.92e-17 83.2
Msa1437980 MtrunA17_Chr8g0341151 26.398 322 189 17 6 315 7 292 5.99e-17 81.6
Msa1437980 MtrunA17_Chr1g0181731 24.739 287 196 8 40 319 30 303 1.45e-15 77.8
Msa1437980 MtrunA17_Chr8g0340941 24.233 326 203 14 4 315 1 296 1.50e-14 74.3
Msa1437980 MtrunA17_Chr8g0341231 23.867 331 212 13 1 315 12 318 1.97e-13 70.9
Msa1437980 MtrunA17_Chr3g0123141 26.829 287 187 12 40 317 28 300 2.47e-13 70.9
Msa1437980 MtrunA17_Chr8g0340931 23.263 331 217 12 1 322 1 303 5.60e-13 69.7
Msa1437980 MtrunA17_Chr8g0340881 24.768 323 201 14 4 315 9 300 6.91e-13 69.3
Msa1437980 MtrunA17_Chr6g0487561 25.466 322 198 17 7 315 18 310 3.86e-12 66.6
Msa1437980 MtrunA17_Chr8g0340871 23.810 336 207 12 4 324 10 311 4.91e-12 67.0
Msa1437980 MtrunA17_Chr8g0341271 25.506 247 163 7 81 322 5 235 9.58e-12 64.7
Msa1437980 MtrunA17_Chr8g0340891 23.077 325 210 14 1 315 6 300 1.78e-11 65.1
Msa1437980 MtrunA17_Chr4g0044931 34.615 104 57 3 36 135 3 99 4.28e-11 61.6
Msa1437980 MtrunA17_Chr8g0347661 22.082 317 228 7 1 315 5 304 6.45e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1437980 AT1G25570.1 59.717 283 107 7 36 315 28 306 3.14e-115 347
Msa1437980 AT1G28340.1 31.741 293 167 10 37 314 28 302 1.11e-35 136
Msa1437980 AT1G67720.1 26.923 286 187 10 40 317 29 300 9.65e-19 87.4
Msa1437980 AT2G37050.2 26.230 305 200 11 21 319 19 304 2.57e-17 83.2
Msa1437980 AT2G37050.1 25.817 306 200 11 21 319 19 304 2.58e-17 83.2
Msa1437980 AT2G37050.3 25.817 306 200 11 21 319 19 304 2.63e-17 83.2
Msa1437980 AT2G37050.4 26.230 305 200 11 21 319 19 304 2.77e-17 83.2
Msa1437980 AT5G48740.1 29.795 292 159 13 29 304 16 277 2.95e-17 83.2
Msa1437980 AT3G46400.1 25.926 297 185 11 40 324 31 304 5.87e-15 76.3
Msa1437980 AT1G51910.1 27.407 270 165 11 53 315 49 294 7.31e-14 72.8
Msa1437980 AT3G46260.1 28.986 207 119 10 40 236 31 219 1.93e-13 71.2
Msa1437980 AT1G51880.3 25.545 321 196 15 6 315 23 311 3.91e-13 70.9
Msa1437980 AT1G51880.2 25.545 321 196 15 6 315 23 311 4.04e-13 70.5
Msa1437980 AT1G51880.1 25.545 321 196 15 6 315 5 293 4.48e-13 70.5
Msa1437980 AT2G14440.1 27.491 291 177 14 42 320 34 302 5.08e-13 70.5
Msa1437980 AT2G28990.2 25.952 289 182 13 40 319 28 293 5.34e-13 70.1
Msa1437980 AT2G28990.1 25.952 289 182 13 40 319 28 293 5.34e-13 70.1
Msa1437980 AT1G51890.3 25.625 320 193 16 8 315 3 289 1.24e-12 68.9
Msa1437980 AT3G19230.1 30.732 205 124 10 38 236 23 215 1.34e-12 68.6
Msa1437980 AT1G51890.2 25.625 320 193 16 8 315 3 289 1.39e-12 68.9
Msa1437980 AT1G51890.1 25.625 320 193 16 8 315 3 289 1.57e-12 68.9
Msa1437980 AT2G14510.2 28.669 293 164 16 40 315 40 304 5.45e-12 67.0
Msa1437980 AT2G14510.1 28.669 293 164 16 40 315 32 296 5.89e-12 67.0
Msa1437980 AT3G21340.2 25.000 300 180 14 40 323 36 306 1.65e-11 65.5
Msa1437980 AT3G21340.1 25.333 300 179 15 40 323 36 306 2.08e-11 65.5
Msa1437980 AT4G29450.1 25.085 295 150 14 53 315 46 301 3.69e-11 64.7
Msa1437980 AT2G04300.2 24.917 301 192 14 32 320 26 304 7.33e-11 63.5
Msa1437980 AT2G28960.2 25.506 247 153 9 82 324 82 301 7.37e-11 63.5
Msa1437980 AT2G04300.1 25.000 292 186 13 40 320 35 304 8.20e-11 63.5
Msa1437980 AT5G59650.2 25.103 243 140 9 84 315 83 294 9.02e-11 63.5

Find 206 sgRNAs with CRISPR-Local

Find 406 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTAAGCTTGTTGCTGTTTC+TGG 0.073874 tig0028439:+9414 Msa1437980:three_prime_UTR
TATCATCATGTCCTATGTTT+TGG 0.175653 tig0028439:+12323 Msa1437980:three_prime_UTR
AGAGAGGTTTGTTACATAAA+AGG 0.181449 tig0028439:-8077 Msa1437980:intergenic
CTTGGCAGTCAAGGCTTAAA+AGG 0.223624 tig0028439:+10218 Msa1437980:three_prime_UTR
TCTGATCTTACACTTGTATC+AGG 0.250590 tig0028439:-10815 Msa1437980:intergenic
AGCAAAGGCTTTAAGCTATA+TGG 0.254304 tig0028439:+13913 Msa1437980:three_prime_UTR
AAATTTGAGTAGTAATGTTT+TGG 0.265295 tig0028439:+9389 Msa1437980:three_prime_UTR
ACCTTTGATGAATGTATATT+AGG 0.273813 tig0028439:+13607 Msa1437980:three_prime_UTR
CGTGCGGCTCCGGTGATCAT+TGG 0.275863 tig0028439:+8984 Msa1437980:CDS
CCGTCGCGTGCGGTGGATTC+AGG 0.279601 tig0028439:-8782 Msa1437980:intergenic
GTGCGGCTCCGGTGATCATT+GGG 0.291033 tig0028439:+8985 Msa1437980:CDS
ACATGCTATAGAGGAGTAAA+AGG 0.313768 tig0028439:-13352 Msa1437980:intergenic
AAGGAATCGCTTCGAGTTCC+AGG 0.328067 tig0028439:+9677 Msa1437980:three_prime_UTR
TGCGCATTTGACGATGATTT+CGG 0.332297 tig0028439:+13538 Msa1437980:three_prime_UTR
AACTTGAGTTCGAATTCCTT+GGG 0.350082 tig0028439:+10759 Msa1437980:three_prime_UTR
GGTTGGAGTGGAGGTGGAGG+TGG 0.353930 tig0028439:-8199 Msa1437980:intergenic
CCTTCCACTCACCCTCTTCA+AGG 0.354412 tig0028439:+9486 Msa1437980:three_prime_UTR
AGAGCCGGTTAAGTGATTAT+TGG 0.355788 tig0028439:-11305 Msa1437980:intergenic
CCTCTGATATTTGTTTCTCT+TGG 0.359314 tig0028439:-13272 Msa1437980:intergenic
GAGAGGTTTGTTACATAAAA+GGG 0.360824 tig0028439:-8076 Msa1437980:intergenic
TTTCTTTATCATGCTTTACT+TGG 0.362445 tig0028439:-13795 Msa1437980:intergenic
CTCCTACAACTTGGGATGCT+TGG 0.363317 tig0028439:+9729 Msa1437980:three_prime_UTR
CAATTTCTTCCGGTTCGGTT+CGG 0.369881 tig0028439:-9069 Msa1437980:intergenic
CGGCTCTATACCTGACAGTT+TGG 0.381864 tig0028439:+11321 Msa1437980:three_prime_UTR
AAAAGATGGGGTTGGAGTGG+AGG 0.382859 tig0028439:-8208 Msa1437980:intergenic
TTCATTAAAACATGCTATAG+AGG 0.383586 tig0028439:-13361 Msa1437980:intergenic
TAAGAAGGAGAGGAAGAAAT+GGG 0.386032 tig0028439:-8154 Msa1437980:intergenic
ATCAGTATCGTTGGTGAAGC+CGG 0.386261 tig0028439:-9011 Msa1437980:intergenic
AAACTTGAGTTCGAATTCCT+TGG 0.395989 tig0028439:+10758 Msa1437980:three_prime_UTR
TGTACTCACCCATTACTTCA+TGG 0.396316 tig0028439:-12477 Msa1437980:intergenic
TTATCCAATAATCACTTAAC+CGG 0.398157 tig0028439:+11301 Msa1437980:three_prime_UTR
TCCTACAACTTGGGATGCTT+GGG 0.403579 tig0028439:+9730 Msa1437980:three_prime_UTR
TGGGGTTGGAGTGGAGGTGG+AGG 0.408627 tig0028439:-8202 Msa1437980:intergenic
ATGAGTATGTGTTAATGTTA+TGG 0.409943 tig0028439:+13847 Msa1437980:three_prime_UTR
CACTAAACTCGCAGCTGAAA+TGG 0.410465 tig0028439:-13649 Msa1437980:intergenic
TACGAAGAGGCGAGATTAGC+GGG 0.410945 tig0028439:-8037 Msa1437980:intergenic
AAAAGGAACGATTATGACTT+TGG 0.411238 tig0028439:+12448 Msa1437980:three_prime_UTR
AAAACTCTGACAATTTCTTC+CGG 0.411927 tig0028439:-9079 Msa1437980:intergenic
ATAAGAAGGAGAGGAAGAAA+TGG 0.412283 tig0028439:-8155 Msa1437980:intergenic
TCTGGTGCTCCTTTGATTTG+TGG 0.414322 tig0028439:+9432 Msa1437980:three_prime_UTR
AGATGGGGTTGGAGTGGAGG+TGG 0.424162 tig0028439:-8205 Msa1437980:intergenic
AGTGGAGGTGGAGGTGGAGA+TGG 0.424962 tig0028439:-8193 Msa1437980:intergenic
ATCCCTGTGCTCCTACAACT+TGG 0.426893 tig0028439:+9720 Msa1437980:three_prime_UTR
AGCTTCATCGGAAAATAATT+CGG 0.429177 tig0028439:-9139 Msa1437980:intergenic
ATCATTGATGATTCTTGAGC+TGG 0.430224 tig0028439:+13300 Msa1437980:three_prime_UTR
GGAGGTGGAGGTGGAGATGG+TGG 0.433103 tig0028439:-8190 Msa1437980:intergenic
TCATACGAAGCGGAATTTAC+AGG 0.433583 tig0028439:-8911 Msa1437980:intergenic
CTTTATTCTGTTGGCGTGCA+CGG 0.435292 tig0028439:+11769 Msa1437980:three_prime_UTR
TCTGACAATTTCTTCCGGTT+CGG 0.435633 tig0028439:-9074 Msa1437980:intergenic
TAGTTACCAGAGGGAAAAGA+TGG 0.437942 tig0028439:-8222 Msa1437980:intergenic
GGAGAGCCATGTTGTGTTGA+AGG 0.442022 tig0028439:-8501 Msa1437980:intergenic
CTTCATCCGGCTGCCATGAC+CGG 0.442238 tig0028439:-9042 Msa1437980:intergenic
GACGGTGGTGGTGGCGCCGC+CGG 0.442389 tig0028439:-8537 Msa1437980:intergenic
GGTCTACCCCATGAAGTAAT+GGG 0.451649 tig0028439:+12469 Msa1437980:three_prime_UTR
CCTCCGTCGTCACCGCCGTT+TGG 0.452443 tig0028439:-9165 Msa1437980:intergenic
TTTCTGCGTGGTACTGCTGC+TGG 0.454474 tig0028439:+12405 Msa1437980:three_prime_UTR
GTTGAAGATGCCAAACTGTC+AGG 0.460099 tig0028439:-11331 Msa1437980:intergenic
TTCTTCCCTTCCTCCTCCTC+CGG 0.461071 tig0028439:+8605 Msa1437980:CDS
CGGAGGAGGTAGCGAGAAGA+AGG 0.461089 tig0028439:-8659 Msa1437980:intergenic
GGTGGAGGTGGAGATGGTGG+TGG 0.462941 tig0028439:-8187 Msa1437980:intergenic
ACCAACGATACTGATAAATT+CGG 0.463808 tig0028439:+9019 Msa1437980:CDS
GCTTCGAGTTCCAGGTAGAA+TGG 0.465025 tig0028439:+9685 Msa1437980:three_prime_UTR
ATCCCAAGTTGTAGGAGCAC+AGG 0.466211 tig0028439:-9723 Msa1437980:intergenic
GCCGCTGATCTTTGCTTCTA+CGG 0.466510 tig0028439:+8845 Msa1437980:CDS
TCCGGTGATCATTGGGGCGC+CGG 0.466791 tig0028439:+8992 Msa1437980:CDS
GAAGCAAAGATCAGCGGCGG+AGG 0.466839 tig0028439:-8840 Msa1437980:intergenic
TTCTTTATCATGCTTTACTT+GGG 0.467409 tig0028439:-13794 Msa1437980:intergenic
GGGAAAAGATGGGGTTGGAG+TGG 0.469522 tig0028439:-8211 Msa1437980:intergenic
GTTGATATTTACAAAGAAGT+GGG 0.471309 tig0028439:+9330 Msa1437980:three_prime_UTR
TGAATTACATTTCAGTAATG+AGG 0.471503 tig0028439:-9793 Msa1437980:intergenic
AAGTGCTATGAAGGCATTGA+AGG 0.475925 tig0028439:+9658 Msa1437980:three_prime_UTR
GTAGCGAGAAGAAGGAAGTG+AGG 0.483451 tig0028439:-8651 Msa1437980:intergenic
CCAGAGCAACTTTATTCTGT+TGG 0.485444 tig0028439:+11760 Msa1437980:three_prime_UTR
GTACTCACCCATTACTTCAT+GGG 0.485738 tig0028439:-12476 Msa1437980:intergenic
CACCGTGAATGGTACTGAAA+AGG 0.486056 tig0028439:+9114 Msa1437980:CDS
GGTAGAGTTTCGTGCGGCTC+CGG 0.486410 tig0028439:+8974 Msa1437980:CDS
TATGGTGTGGCTGCATTTCG+CGG 0.487390 tig0028439:+9234 Msa1437980:CDS
GGATGCGAAGATGGACTATA+TGG 0.488407 tig0028439:+9216 Msa1437980:CDS
TGAAGCATTCCGAACCGAAC+CGG 0.490845 tig0028439:+9060 Msa1437980:CDS
ATTTCGGACCATCGTATAAG+AGG 0.490999 tig0028439:+13554 Msa1437980:three_prime_UTR
TGGCTCCGAGACGGTGGTGG+TGG 0.492848 tig0028439:-8546 Msa1437980:intergenic
ATTCGGCCGGTCATGGCAGC+CGG 0.496081 tig0028439:+9036 Msa1437980:CDS
TGGTCTACCCCATGAAGTAA+TGG 0.496519 tig0028439:+12468 Msa1437980:three_prime_UTR
CTGATAAATTCGGCCGGTCA+TGG 0.496522 tig0028439:+9029 Msa1437980:CDS
GCATTGCGTCAAGGTCGAGC+AGG 0.501427 tig0028439:-13469 Msa1437980:intergenic
TAGCGAGAAGAAGGAAGTGA+GGG 0.504555 tig0028439:-8650 Msa1437980:intergenic
CTTCGAGTTCCAGGTAGAAT+GGG 0.507791 tig0028439:+9686 Msa1437980:three_prime_UTR
TCCGATGAAGCTTTACCAAA+CGG 0.508588 tig0028439:+9150 Msa1437980:CDS
GTAACACAGTTGTAGCAATA+CGG 0.509893 tig0028439:-13950 Msa1437980:intergenic
AGCATAAGCGCCGTCGCGTG+CGG 0.511148 tig0028439:-8792 Msa1437980:intergenic
CCATTCCATCCCATTCTACC+TGG 0.511572 tig0028439:-9695 Msa1437980:intergenic
GCTATTGAATGGTAACCTAC+TGG 0.511811 tig0028439:+11726 Msa1437980:three_prime_UTR
TTTATCATCACTCATACGGC+AGG 0.512655 tig0028439:-9762 Msa1437980:intergenic
TTCAGAAATCTTGGCAGTCA+AGG 0.513349 tig0028439:+10209 Msa1437980:intron
AAAAGGTGAAGGGAATCCTT+TGG 0.514538 tig0028439:-13335 Msa1437980:intergenic
GGGTGAAATACCATCAGGAC+TGG 0.514731 tig0028439:+10782 Msa1437980:three_prime_UTR
AGACGGTGAAGGTGCGGAGG+AGG 0.514997 tig0028439:-8673 Msa1437980:intergenic
TCGGTTCGGAATGCTTCATC+CGG 0.517203 tig0028439:-9055 Msa1437980:intergenic
GCCGCAGTTAATGTGGTATG+AGG 0.519419 tig0028439:-8456 Msa1437980:intergenic
TTTCTGAGGGGAGGTTGAAA+CGG 0.521325 tig0028439:-8571 Msa1437980:intergenic
ATTGAGTGTGGATGCGAAGA+TGG 0.522264 tig0028439:+9207 Msa1437980:CDS
AGCATGGCGGATTATCGACT+CGG 0.525538 tig0028439:+12347 Msa1437980:three_prime_UTR
TCCCAAGCATCCCAAGTTGT+AGG 0.527416 tig0028439:-9731 Msa1437980:intergenic
CGTGCGGTGGATTCAGGCCA+TGG 0.528228 tig0028439:-8776 Msa1437980:intergenic
AGGAGGAGGAAGGGAAGAAG+CGG 0.528579 tig0028439:-8601 Msa1437980:intergenic
TCAACAGAGAACACCGTGAA+TGG 0.531402 tig0028439:+9103 Msa1437980:CDS
GAGTGGCTCCGAGACGGTGG+TGG 0.532985 tig0028439:-8549 Msa1437980:intergenic
AACTTCATTCTTGTTAACTA+CGG 0.533727 tig0028439:+8953 Msa1437980:CDS
TTGGCAGTCAAGGCTTAAAA+GGG 0.533821 tig0028439:+10219 Msa1437980:three_prime_UTR
AGTTGATATTTACAAAGAAG+TGG 0.534872 tig0028439:+9329 Msa1437980:three_prime_UTR
GAGAGCCATGTTGTGTTGAA+GGG 0.540481 tig0028439:-8500 Msa1437980:intergenic
AACGGCGGTGACGACGGAGG+AGG 0.541688 tig0028439:+9168 Msa1437980:CDS
GCCGAATTTATCAGTATCGT+TGG 0.543701 tig0028439:-9020 Msa1437980:intergenic
CGGCGCCACCACCACCGTCT+CGG 0.543708 tig0028439:+8541 Msa1437980:CDS
ATAAGCGCCGTCGCGTGCGG+TGG 0.545907 tig0028439:-8789 Msa1437980:intergenic
TGCGTCGTAGTTGTCGTAGA+CGG 0.549286 tig0028439:-8690 Msa1437980:intergenic
GCCGTTTGGTAAAGCTTCAT+CGG 0.551037 tig0028439:-9151 Msa1437980:intergenic
GTCTCTGCCAGGCTATTGAA+TGG 0.551585 tig0028439:+11715 Msa1437980:intron
ATATCTACATCAGAAAGAAA+AGG 0.551812 tig0028439:+12431 Msa1437980:three_prime_UTR
TGGCGCCGCCGGTGTAGTAA+CGG 0.555587 tig0028439:-8526 Msa1437980:intergenic
CCAACAGAATAAAGTTGCTC+TGG 0.556512 tig0028439:-11760 Msa1437980:intergenic
CCTGAATCCACCGCACGCGA+CGG 0.556852 tig0028439:+8782 Msa1437980:CDS
TATAGAGGAGTAAAAGGTGA+AGG 0.556956 tig0028439:-13346 Msa1437980:intergenic
TCCCTGTGCTCCTACAACTT+GGG 0.557396 tig0028439:+9721 Msa1437980:three_prime_UTR
CCTTGAAGAGGGTGAGTGGA+AGG 0.559241 tig0028439:-9486 Msa1437980:intergenic
GTAGTTGTCGTAGACGGTGA+AGG 0.560473 tig0028439:-8684 Msa1437980:intergenic
GGTGAAATACCATCAGGACT+GGG 0.562074 tig0028439:+10783 Msa1437980:three_prime_UTR
GTACGAAGAGGCGAGATTAG+CGG 0.562902 tig0028439:-8038 Msa1437980:intergenic
CCAGGTAGAATGGGATGGAA+TGG 0.563862 tig0028439:+9695 Msa1437980:three_prime_UTR
GAGAGTGCAACGTCGAAGGA+AGG 0.564368 tig0028439:-8725 Msa1437980:intergenic
TCCTAATATACATTCATCAA+AGG 0.565418 tig0028439:-13608 Msa1437980:intergenic
CTGATCTTACACTTGTATCA+GGG 0.565959 tig0028439:-10814 Msa1437980:intergenic
GGAGGAGAGTGCAACGTCGA+AGG 0.568653 tig0028439:-8729 Msa1437980:intergenic
CCGCCATGCTCCCAAAACAT+AGG 0.571259 tig0028439:-12334 Msa1437980:intergenic
AAGAAGGAGAGGAAGAAATG+GGG 0.572907 tig0028439:-8153 Msa1437980:intergenic
CCAGAGGGAAAAGATGGGGT+TGG 0.573200 tig0028439:-8216 Msa1437980:intergenic
TCAGCTGCGAGTTTAGTGTC+CGG 0.573250 tig0028439:+13654 Msa1437980:three_prime_UTR
GAGTTCCAGGTAGAATGGGA+TGG 0.574326 tig0028439:+9690 Msa1437980:three_prime_UTR
ATTCAGTCTCTCAAGCAACA+AGG 0.574855 tig0028439:+12279 Msa1437980:intron
TTCAGTCTCTCAAGCAACAA+GGG 0.575617 tig0028439:+12280 Msa1437980:intron
GCCGGCGCCCCAATGATCAC+CGG 0.581569 tig0028439:-8993 Msa1437980:intergenic
TATTCTGTTGGCGTGCACGG+TGG 0.583936 tig0028439:+11772 Msa1437980:three_prime_UTR
TGATGATGAATAAGAAGGAG+AGG 0.585170 tig0028439:-8164 Msa1437980:intergenic
CCAGTTGAAAATGATGGTGG+AGG 0.589159 tig0028439:-8747 Msa1437980:intergenic
AAAACCTTGAAGAGGGTGAG+TGG 0.590546 tig0028439:-9490 Msa1437980:intergenic
AAGCAAAGATCAGCGGCGGA+GGG 0.590897 tig0028439:-8839 Msa1437980:intergenic
ATAGAGGAGTAAAAGGTGAA+GGG 0.593612 tig0028439:-13345 Msa1437980:intergenic
CATTGCGTCAAGGTCGAGCA+GGG 0.593861 tig0028439:-13468 Msa1437980:intergenic
CTGGCACTCGTCCTTCCAGT+AGG 0.596614 tig0028439:-11741 Msa1437980:intergenic
GCCGCCGGTGTAGTAACGGT+CGG 0.600805 tig0028439:-8522 Msa1437980:intergenic
TCAAGCAACAAGGGTTTGTG+TGG 0.602353 tig0028439:+12289 Msa1437980:three_prime_UTR
AGTTCGATTGATGAGATGAT+CGG 0.602669 tig0028439:-8884 Msa1437980:intergenic
AATAATTCAATGTAAGCTTG+TGG 0.605271 tig0028439:+13442 Msa1437980:three_prime_UTR
TACTCACCCATTACTTCATG+GGG 0.605464 tig0028439:-12475 Msa1437980:intergenic
TCGTATGATTCTAACTCCAC+CGG 0.607134 tig0028439:+8926 Msa1437980:CDS
TGATGAGATGATCGGAGCAT+CGG 0.608101 tig0028439:-8876 Msa1437980:intergenic
AGTTACCAGAGGGAAAAGAT+GGG 0.609275 tig0028439:-8221 Msa1437980:intergenic
GCATGGCGGATTATCGACTC+GGG 0.609811 tig0028439:+12348 Msa1437980:three_prime_UTR
AGCAGCATTGCATTGCGTCA+AGG 0.615385 tig0028439:-13478 Msa1437980:intergenic
TTCTCAATACCACAAATCAA+AGG 0.615729 tig0028439:-9441 Msa1437980:intergenic
TCCCAAGTTGTAGGAGCACA+GGG 0.616318 tig0028439:-9722 Msa1437980:intergenic
CTTGAGTTCGAATTCCTTGG+GGG 0.616425 tig0028439:+10761 Msa1437980:three_prime_UTR
AGCGAGAAGAAGGAAGTGAG+GGG 0.618388 tig0028439:-8649 Msa1437980:intergenic
ACGGAGTGGCTCCGAGACGG+TGG 0.622129 tig0028439:-8552 Msa1437980:intergenic
CAGACCCCTTCAACACAACA+TGG 0.622219 tig0028439:+8495 Msa1437980:CDS
ACGGCATGCCTCTTATACGA+TGG 0.622369 tig0028439:-13562 Msa1437980:intergenic
TGGTATTGAGAATTATGCAT+TGG 0.622429 tig0028439:+9452 Msa1437980:three_prime_UTR
AGAGCCATGTTGTGTTGAAG+GGG 0.622435 tig0028439:-8499 Msa1437980:intergenic
ACTTGAGTTCGAATTCCTTG+GGG 0.623399 tig0028439:+10760 Msa1437980:three_prime_UTR
GAAACGGAGTGGCTCCGAGA+CGG 0.624248 tig0028439:-8555 Msa1437980:intergenic
TGTCGTAGACGGTGAAGGTG+CGG 0.624271 tig0028439:-8679 Msa1437980:intergenic
TTACCAAACGGCGGTGACGA+CGG 0.624674 tig0028439:+9162 Msa1437980:CDS
TTGAAGTGCCGCAGTTAATG+TGG 0.625396 tig0028439:-8463 Msa1437980:intergenic
AGAACGCCAGTTGAAAATGA+TGG 0.627133 tig0028439:-8753 Msa1437980:intergenic
ACAACTTGGGATGCTTGGGA+AGG 0.628183 tig0028439:+9734 Msa1437980:three_prime_UTR
CGTAGACGGTGAAGGTGCGG+AGG 0.629380 tig0028439:-8676 Msa1437980:intergenic
CAAACTGTCAGGTATAGAGC+CGG 0.630464 tig0028439:-11320 Msa1437980:intergenic
TTGAGTTCGAATTCCTTGGG+GGG 0.635459 tig0028439:+10762 Msa1437980:three_prime_UTR
GACGACGGAGGAGGAGACGT+TGG 0.639543 tig0028439:+9177 Msa1437980:CDS
AGTGCAACGTCGAAGGAAGG+AGG 0.640604 tig0028439:-8722 Msa1437980:intergenic
CTGGAGAGTCAACACGCCAA+AGG 0.643105 tig0028439:+13319 Msa1437980:three_prime_UTR
CTCTCCGACCGTTACTACAC+CGG 0.643735 tig0028439:+8518 Msa1437980:CDS
GGTGGTGATGATGAATAAGA+AGG 0.644775 tig0028439:-8169 Msa1437980:intergenic
ATCGTATAAGAGGCATGCCG+TGG 0.648585 tig0028439:+13564 Msa1437980:three_prime_UTR
ACGCCAGTTGAAAATGATGG+TGG 0.648693 tig0028439:-8750 Msa1437980:intergenic
GCCGTAGAAGCAAAGATCAG+CGG 0.649920 tig0028439:-8846 Msa1437980:intergenic
ACGATACTGATAAATTCGGC+CGG 0.650645 tig0028439:+9023 Msa1437980:CDS
CCAAGAGAAACAAATATCAG+AGG 0.652998 tig0028439:+13272 Msa1437980:three_prime_UTR
GTAGAAGCAAAGATCAGCGG+CGG 0.656543 tig0028439:-8843 Msa1437980:intergenic
TTGAATGGTAACCTACTGGA+AGG 0.662357 tig0028439:+11730 Msa1437980:three_prime_UTR
GAGGGGAGGTTGAAACGGAG+TGG 0.668857 tig0028439:-8566 Msa1437980:intergenic
TGCGGCTCCGGTGATCATTG+GGG 0.670365 tig0028439:+8986 Msa1437980:CDS
CCAAACGGCGGTGACGACGG+AGG 0.673808 tig0028439:+9165 Msa1437980:CDS
ATAGGACATGATGATAGAGA+TGG 0.675366 tig0028439:-12316 Msa1437980:intergenic
TCCGACCGTTACTACACCGG+CGG 0.678732 tig0028439:+8521 Msa1437980:CDS
AACTACGGTAGAGTTTCGTG+CGG 0.685030 tig0028439:+8968 Msa1437980:CDS
GTTACCAGAGGGAAAAGATG+GGG 0.689689 tig0028439:-8220 Msa1437980:intergenic
TCCTCATACCACATTAACTG+CGG 0.690190 tig0028439:+8455 Msa1437980:CDS
GGAGTTAGAATCATACGAAG+CGG 0.698239 tig0028439:-8921 Msa1437980:intergenic
AATGCTGCTTCATCACAATG+AGG 0.704080 tig0028439:+13492 Msa1437980:three_prime_UTR
GTTGGAGTACGAATTGAGTG+TGG 0.722672 tig0028439:+9195 Msa1437980:CDS
GAATGCTAGTGATATTACCA+CGG 0.722719 tig0028439:-13581 Msa1437980:intergenic
GATGAAGCTTTACCAAACGG+CGG 0.725813 tig0028439:+9153 Msa1437980:CDS
CATGGCGGATTATCGACTCG+GGG 0.727844 tig0028439:+12349 Msa1437980:three_prime_UTR
CGAAGATGGACTATATGGTG+TGG 0.730949 tig0028439:+9221 Msa1437980:CDS
TGTGTGTGTATTGTACGAAG+AGG 0.734204 tig0028439:-8050 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTGCAAAATTAAAAAATGA+CGG + tig0028439:8336-8355 Msa1437980:intron 15.0%
!!! AAGTATTTTTTTTTCTTTCT+CGG + tig0028439:9522-9541 Msa1437980:intron 15.0%
!! GAAAAGTTACAATTATATAA+CGG - tig0028439:10725-10744 Msa1437980:intergenic 15.0%
!! TTTATAATTGTAAATGACTT+TGG - tig0028439:11087-11106 Msa1437980:intergenic 15.0%
!!! ATTTAATTAAATTTTCCTTC+TGG - tig0028439:11231-11250 Msa1437980:intergenic 15.0%
!! AGATTAATGTAAATTCAAAA+TGG - tig0028439:11950-11969 Msa1437980:intergenic 15.0%
!! ATTTACATTAATCTATTTGA+AGG + tig0028439:11956-11975 Msa1437980:intron 15.0%
!! ACTATAATTGTTATCTAATA+TGG + tig0028439:12131-12150 Msa1437980:intron 15.0%
!!! ATTTTTTTTTTTACTATTCC+TGG + tig0028439:12534-12553 Msa1437980:intron 15.0%
!!! TTTTTTCATTACTAATTGTT+TGG + tig0028439:12635-12654 Msa1437980:intron 15.0%
!!! TAAATATGTTTTGTACATAT+AGG + tig0028439:12750-12769 Msa1437980:intron 15.0%
!! AATTAAAATCAGATTTATGA+AGG - tig0028439:12856-12875 Msa1437980:intergenic 15.0%
!!! TTCATAAATCTGATTTTAAT+TGG + tig0028439:12855-12874 Msa1437980:intron 15.0%
!!! TCATAAATCTGATTTTAATT+GGG + tig0028439:12856-12875 Msa1437980:intron 15.0%
!!! TTTCCATTCAAAATATTTTC+AGG + tig0028439:8425-8444 Msa1437980:intron 20.0%
!!! TTACCTGAAAATATTTTGAA+TGG - tig0028439:8431-8450 Msa1437980:intergenic 20.0%
!!! AAATTTGAGTAGTAATGTTT+TGG + tig0028439:9389-9408 Msa1437980:three_prime_UTR 20.0%
!!! AATTTGAGTAGTAATGTTTT+GGG + tig0028439:9390-9409 Msa1437980:three_prime_UTR 20.0%
!! GAAAAAAAAATACTTGTAAG+AGG - tig0028439:9517-9536 Msa1437980:intergenic 20.0%
!! TTACAAATCTAGATTAATCA+TGG - tig0028439:10379-10398 Msa1437980:intergenic 20.0%
!! ACAATATTTATCTTCTGATA+TGG + tig0028439:10518-10537 Msa1437980:intron 20.0%
!!! GTATCTTTCTAGATTAATTT+TGG + tig0028439:10681-10700 Msa1437980:intron 20.0%
!! ATAACATCTAAAAAAAGACT+GGG - tig0028439:10865-10884 Msa1437980:intergenic 20.0%
!! AATAACATCTAAAAAAAGAC+TGG - tig0028439:10866-10885 Msa1437980:intergenic 20.0%
!! TTCTAAATGAGTGAAAATAT+TGG - tig0028439:10950-10969 Msa1437980:intergenic 20.0%
!!! TTTTCATACATATCTTTTCT+AGG + tig0028439:11038-11057 Msa1437980:intron 20.0%
!! TTGAAATCAAATTTCAAAAC+TGG - tig0028439:11482-11501 Msa1437980:intergenic 20.0%
!! TAAATATACGAAGAGAAATA+CGG - tig0028439:11604-11623 Msa1437980:intergenic 20.0%
!!! TTTGCTATAATCTACATTTT+TGG + tig0028439:11814-11833 Msa1437980:intron 20.0%
!!! AAAATTTTGCAAAAGCAAAA+AGG - tig0028439:11905-11924 Msa1437980:intergenic 20.0%
!!! TGCTTCTTTTATTTGTTTTA+CGG + tig0028439:12011-12030 Msa1437980:intron 20.0%
!! AAAAGAATGAATCACTATAA+AGG - tig0028439:12973-12992 Msa1437980:intergenic 20.0%
!!! AAAATAAACTTTTCACATGA+AGG - tig0028439:13121-13140 Msa1437980:intergenic 20.0%
!! GGAATAAAAAGTTGTATTTA+TGG + tig0028439:13185-13204 Msa1437980:intron 20.0%
! AACTTCATTCTTGTTAACTA+CGG + tig0028439:8953-8972 Msa1437980:CDS 25.0%
!! GTTTTTGATGTGTTTATCAA+TGG + tig0028439:9291-9310 Msa1437980:CDS 25.0%
!! AGTTGATATTTACAAAGAAG+TGG + tig0028439:9329-9348 Msa1437980:three_prime_UTR 25.0%
! GTTGATATTTACAAAGAAGT+GGG + tig0028439:9330-9349 Msa1437980:three_prime_UTR 25.0%
!! ATTTGAGTAGTAATGTTTTG+GGG + tig0028439:9391-9410 Msa1437980:three_prime_UTR 25.0%
! TGAATTACATTTCAGTAATG+AGG - tig0028439:9796-9815 Msa1437980:intergenic 25.0%
!! TACCATTTGATCATTTTATG+AGG + tig0028439:9943-9962 Msa1437980:intron 25.0%
! TTCCTCATAAAATGATCAAA+TGG - tig0028439:9948-9967 Msa1437980:intergenic 25.0%
!! ATTTGATCATTTTATGAGGA+AGG + tig0028439:9947-9966 Msa1437980:intron 25.0%
! AATGGTAGAATAGGTTTAAT+TGG + tig0028439:10063-10082 Msa1437980:intron 25.0%
! AGGTTTAATTGGTAGAAAAA+TGG + tig0028439:10074-10093 Msa1437980:intron 25.0%
! TTAATTGGTAGAAAAATGGA+CGG + tig0028439:10078-10097 Msa1437980:intron 25.0%
!! CATTTTCATTTCAGAAATCT+TGG + tig0028439:10200-10219 Msa1437980:intron 25.0%
! ATGCAAGATGTAAAGAAATT+AGG - tig0028439:10306-10325 Msa1437980:intergenic 25.0%
!! TAATTTTACCACATGTTTAG+TGG + tig0028439:10396-10415 Msa1437980:intron 25.0%
!!! AAAGCTGATCATTTTGAAAA+AGG - tig0028439:10477-10496 Msa1437980:intergenic 25.0%
!!! TTTTTCAAAATGATCAGCTT+TGG + tig0028439:10476-10495 Msa1437980:intron 25.0%
! GATAGAATAATGATGTACAA+TGG + tig0028439:10552-10571 Msa1437980:intron 25.0%
! CAATCATCATATACTGAATA+CGG + tig0028439:10987-11006 Msa1437980:intron 25.0%
! TTATCCAATAATCACTTAAC+CGG + tig0028439:11301-11320 Msa1437980:three_prime_UTR 25.0%
! ATGATAACTCGACAATAAAA+AGG + tig0028439:11422-11441 Msa1437980:intron 25.0%
! CAAATTTCAAAACTGGATTA+CGG - tig0028439:11475-11494 Msa1437980:intergenic 25.0%
! ATTAACAAAACCAAATGACT+AGG - tig0028439:11514-11533 Msa1437980:intergenic 25.0%
! TTCGAAGAATTATGAAACTT+GGG - tig0028439:11850-11869 Msa1437980:intergenic 25.0%
!!! GCTTCTTTTATTTGTTTTAC+GGG + tig0028439:12012-12031 Msa1437980:intron 25.0%
! ATATCTACATCAGAAAGAAA+AGG + tig0028439:12431-12450 Msa1437980:three_prime_UTR 25.0%
! TAAATATAAACCACATTACC+AGG - tig0028439:12555-12574 Msa1437980:intergenic 25.0%
! TTACTAATTGTTTGGTATCA+TGG + tig0028439:12643-12662 Msa1437980:intron 25.0%
!! TGTTTTGTACATATAGGATT+TGG + tig0028439:12756-12775 Msa1437980:intron 25.0%
!! GGAATTTGGTGAAATTTAAA+AGG - tig0028439:13147-13166 Msa1437980:intergenic 25.0%
!! TGCTAATTGTCAAGTTTTTA+TGG + tig0028439:13228-13247 Msa1437980:intron 25.0%
! TTCATTAAAACATGCTATAG+AGG - tig0028439:13364-13383 Msa1437980:intergenic 25.0%
! AATAATTCAATGTAAGCTTG+TGG + tig0028439:13442-13461 Msa1437980:three_prime_UTR 25.0%
! ACCTTTGATGAATGTATATT+AGG + tig0028439:13607-13626 Msa1437980:three_prime_UTR 25.0%
! TCCTAATATACATTCATCAA+AGG - tig0028439:13611-13630 Msa1437980:intergenic 25.0%
!!! TTTTTCAAGTTACATCAACT+TGG + tig0028439:13677-13696 Msa1437980:three_prime_UTR 25.0%
! TTCTTTATCATGCTTTACTT+GGG - tig0028439:13797-13816 Msa1437980:intergenic 25.0%
! TTTCTTTATCATGCTTTACT+TGG - tig0028439:13798-13817 Msa1437980:intergenic 25.0%
! ATGAGTATGTGTTAATGTTA+TGG + tig0028439:13847-13866 Msa1437980:three_prime_UTR 25.0%
!! GAGAGGTTTGTTACATAAAA+GGG - tig0028439:8079-8098 None:intergenic 30.0%
!! AGAGAGGTTTGTTACATAAA+AGG - tig0028439:8080-8099 None:intergenic 30.0%
TAAAAAATGACGGTAACTCA+TGG + tig0028439:8346-8365 Msa1437980:intron 30.0%
AACTTAATCAATCAAGCACT+TGG + tig0028439:8380-8399 Msa1437980:intron 30.0%
! AACAAGAATGAAGTTTTCAC+CGG - tig0028439:8948-8967 Msa1437980:intergenic 30.0%
ACCAACGATACTGATAAATT+CGG + tig0028439:9019-9038 Msa1437980:CDS 30.0%
AAAACTCTGACAATTTCTTC+CGG - tig0028439:9082-9101 Msa1437980:intergenic 30.0%
AGCTTCATCGGAAAATAATT+CGG - tig0028439:9142-9161 Msa1437980:intergenic 30.0%
TGATTCAAGTGTGAAAAAGA+AGG + tig0028439:9261-9280 Msa1437980:CDS 30.0%
TTCTCAATACCACAAATCAA+AGG - tig0028439:9444-9463 Msa1437980:intergenic 30.0%
! TGGTATTGAGAATTATGCAT+TGG + tig0028439:9452-9471 Msa1437980:three_prime_UTR 30.0%
!!! TTTTTTCTTTCTCGGATTGA+AGG + tig0028439:9530-9549 Msa1437980:intron 30.0%
TGTGTGTGATTTATAGCTTA+TGG + tig0028439:9619-9638 Msa1437980:intron 30.0%
GTGTGTGATTTATAGCTTAT+GGG + tig0028439:9620-9639 Msa1437980:intron 30.0%
! TTTTGTAGTAAGTGCTATGA+AGG + tig0028439:9649-9668 Msa1437980:intron 30.0%
!! CAGTTTTATCATCACTCATA+CGG - tig0028439:9769-9788 Msa1437980:intergenic 30.0%
AGAGCAAAATAGCAGAAAAT+TGG - tig0028439:9825-9844 Msa1437980:intergenic 30.0%
CTTGGAACATGAAATGTTTA+TGG - tig0028439:9871-9890 Msa1437980:intergenic 30.0%
AAACATTTCATGTTCCAAGT+AGG + tig0028439:9872-9891 Msa1437980:intron 30.0%
TTAACCTTACACTTGACTAA+AGG - tig0028439:10045-10064 Msa1437980:intergenic 30.0%
TTAGTCAAGTGTAAGGTTAA+TGG + tig0028439:10045-10064 Msa1437980:intron 30.0%
TGTAAGGTTAATGGTAGAAT+AGG + tig0028439:10054-10073 Msa1437980:intron 30.0%
! ACATTCGTTTGAAATCTTGT+CGG + tig0028439:10117-10136 Msa1437980:intron 30.0%
TTTCCTTGCATAATGAACTT+CGG + tig0028439:10152-10171 Msa1437980:intron 30.0%
!!! GATTAGTCTTTTGTCAGATT+TGG + tig0028439:10256-10275 Msa1437980:three_prime_UTR 30.0%
ATTAAAATCCTTGCAATTGC+TGG - tig0028439:10617-10636 Msa1437980:intergenic 30.0%
TGTTAAAGAACTCAATTGAG+TGG + tig0028439:10900-10919 Msa1437980:intron 30.0%
!! TGACTTTGGAGTTTAAATTC+AGG - tig0028439:11073-11092 Msa1437980:intergenic 30.0%
! ACTATGAAGTGCTCAATAAA+TGG + tig0028439:11146-11165 Msa1437980:intron 30.0%
! CTATGAAGTGCTCAATAAAT+GGG + tig0028439:11147-11166 Msa1437980:intron 30.0%
! TATGAAGTGCTCAATAAATG+GGG + tig0028439:11148-11167 Msa1437980:intron 30.0%
! TTTCTCTGTAATGTTTCTGT+AGG + tig0028439:11275-11294 Msa1437980:intron 30.0%
! TTCTCTGTAATGTTTCTGTA+GGG + tig0028439:11276-11295 Msa1437980:intron 30.0%
AATCATCTTTCCTAGTCATT+TGG + tig0028439:11501-11520 Msa1437980:intron 30.0%
! TGTTGCCAATATATTTTTCC+TGG + tig0028439:11553-11572 Msa1437980:intron 30.0%
CAGATCCAGGAAAAATATAT+TGG - tig0028439:11561-11580 Msa1437980:intergenic 30.0%
! CAATATATTTTTCCTGGATC+TGG + tig0028439:11559-11578 Msa1437980:intron 30.0%
CTTCGAAGAATTATGAAACT+TGG - tig0028439:11851-11870 Msa1437980:intergenic 30.0%
ATAATTCATGACAAACCTAC+CGG + tig0028439:12067-12086 Msa1437980:intron 30.0%
TTTATGCTGCACATTATCAA+AGG + tig0028439:12181-12200 Msa1437980:intron 30.0%
! TATCATCATGTCCTATGTTT+TGG + tig0028439:12323-12342 Msa1437980:three_prime_UTR 30.0%
! ATCATCATGTCCTATGTTTT+GGG + tig0028439:12324-12343 Msa1437980:three_prime_UTR 30.0%
AAAAGGAACGATTATGACTT+TGG + tig0028439:12448-12467 Msa1437980:three_prime_UTR 30.0%
!! TTTTACTATTCCTGGTAATG+TGG + tig0028439:12542-12561 Msa1437980:intron 30.0%
ATGAAAAAACAGCTATTGCA+CGG - tig0028439:12624-12643 Msa1437980:intergenic 30.0%
! TGAATCACTATAAAGGCATA+TGG - tig0028439:12966-12985 Msa1437980:intergenic 30.0%
TAGTAATCATACCTTCATAG+TGG + tig0028439:13057-13076 Msa1437980:intron 30.0%
GACAATACAAGAATTATGTC+CGG - tig0028439:13099-13118 Msa1437980:intergenic 30.0%
CTAAAACTTCTTCAGGAATT+TGG - tig0028439:13161-13180 Msa1437980:intergenic 30.0%
!!! TCCTGAAGAAGTTTTAGTTT+TGG + tig0028439:13164-13183 Msa1437980:intron 30.0%
TCCAAAACTAAAACTTCTTC+AGG - tig0028439:13168-13187 Msa1437980:intergenic 30.0%
AAAGTTGTATTTATGGACCT+TGG + tig0028439:13192-13211 Msa1437980:intron 30.0%
AAAAACTTGACAATTAGCAC+AGG - tig0028439:13227-13246 Msa1437980:intergenic 30.0%
GTTGATGTAACTTGAAAAAC+CGG - tig0028439:13676-13695 Msa1437980:intergenic 30.0%
!! CTTGAACATTTTAGTAGCAA+AGG + tig0028439:13898-13917 Msa1437980:intron 30.0%
GAAAAAAGTGAGAATGAGAG+AGG - tig0028439:8096-8115 None:intergenic 35.0%
TAAGAAGGAGAGGAAGAAAT+GGG - tig0028439:8157-8176 None:intergenic 35.0%
ATAAGAAGGAGAGGAAGAAA+TGG - tig0028439:8158-8177 None:intergenic 35.0%
! TGATGATGAATAAGAAGGAG+AGG - tig0028439:8167-8186 None:intergenic 35.0%
!! ACCAAACATGCAAAAGTACT+CGG - tig0028439:8253-8272 Msa1437980:intergenic 35.0%
ACGGTAACTCATGGTAATTT+CGG + tig0028439:8355-8374 Msa1437980:intron 35.0%
!!! TGAGTAGCAGTTTTTTTTGC+CGG - tig0028439:8627-8646 Msa1437980:intergenic 35.0%
AGTTCGATTGATGAGATGAT+CGG - tig0028439:8887-8906 Msa1437980:intergenic 35.0%
!!! GAAGTTTTGCTGCTTTTACT+TGG + tig0028439:9352-9371 Msa1437980:three_prime_UTR 35.0%
!! ATTAAGCTTGTTGCTGTTTC+TGG + tig0028439:9414-9433 Msa1437980:three_prime_UTR 35.0%
AAGAGGAAAAACCTTGAAGA+GGG - tig0028439:9500-9519 Msa1437980:intergenic 35.0%
TAAGAGGAAAAACCTTGAAG+AGG - tig0028439:9501-9520 Msa1437980:intergenic 35.0%
TTATGTATTCAGCACCTACT+TGG - tig0028439:9889-9908 Msa1437980:intergenic 35.0%
AGCGTGTGTATATAATCATG+AGG - tig0028439:10017-10036 Msa1437980:intergenic 35.0%
TTCCTTGCATAATGAACTTC+GGG + tig0028439:10153-10172 Msa1437980:intron 35.0%
TTCAATACATCTAAACCGCA+CGG - tig0028439:10330-10349 Msa1437980:intergenic 35.0%
!!! TGCTCAGTGTTTTAAGTTGA+GGG - tig0028439:10453-10472 Msa1437980:intergenic 35.0%
!!! ATGCTCAGTGTTTTAAGTTG+AGG - tig0028439:10454-10473 Msa1437980:intergenic 35.0%
! CTTTGGTACTTTCATTTTCG+TGG + tig0028439:10493-10512 Msa1437980:intron 35.0%
TTCATTCCTCAAGTAAATGC+AGG - tig0028439:10585-10604 Msa1437980:intergenic 35.0%
!! AATTTTGGTCATGTCCATAG+TGG + tig0028439:10696-10715 Msa1437980:intron 35.0%
!! ATTTTGGTCATGTCCATAGT+GGG + tig0028439:10697-10716 Msa1437980:intron 35.0%
! TTATATAACGGAACCCACTA+TGG - tig0028439:10713-10732 Msa1437980:intergenic 35.0%
AAACTTGAGTTCGAATTCCT+TGG + tig0028439:10758-10777 Msa1437980:three_prime_UTR 35.0%
AACTTGAGTTCGAATTCCTT+GGG + tig0028439:10759-10778 Msa1437980:three_prime_UTR 35.0%
CTGATCTTACACTTGTATCA+GGG - tig0028439:10817-10836 Msa1437980:intergenic 35.0%
TCTGATCTTACACTTGTATC+AGG - tig0028439:10818-10837 Msa1437980:intergenic 35.0%
GTTCTGTTCATAATACCAGA+AGG + tig0028439:11213-11232 Msa1437980:intron 35.0%
AACATGCATAAAAGAGACAC+AGG - tig0028439:11670-11689 Msa1437980:intergenic 35.0%
TTATAATGATTGTCTCTGCC+AGG + tig0028439:11704-11723 Msa1437980:intron 35.0%
ATAGGACATGATGATAGAGA+TGG - tig0028439:12319-12338 Msa1437980:intergenic 35.0%
!!! ATGTCTTTTTGTTTTCTGCG+TGG + tig0028439:12393-12412 Msa1437980:three_prime_UTR 35.0%
GGTAAAACAAATGAAGCAAC+AGG - tig0028439:12603-12622 Msa1437980:intergenic 35.0%
CTAATTGTTTGGTATCATGG+TGG + tig0028439:12646-12665 Msa1437980:intron 35.0%
AGCATGCATGTTTGATATCA+CGG - tig0028439:12714-12733 Msa1437980:intergenic 35.0%
! TATGTTTCCTGTACTGACAA+AGG + tig0028439:12800-12819 Msa1437980:intron 35.0%
TATGTTCCATTATGTGCTCA+AGG + tig0028439:12913-12932 Msa1437980:intron 35.0%
TAATCATACCTTCATAGTGG+TGG + tig0028439:13060-13079 Msa1437980:intron 35.0%
! CCTCTGATATTTGTTTCTCT+TGG - tig0028439:13275-13294 Msa1437980:intergenic 35.0%
CCAAGAGAAACAAATATCAG+AGG + tig0028439:13272-13291 Msa1437980:three_prime_UTR 35.0%
! ATCATTGATGATTCTTGAGC+TGG + tig0028439:13300-13319 Msa1437980:three_prime_UTR 35.0%
ATAGAGGAGTAAAAGGTGAA+GGG - tig0028439:13348-13367 Msa1437980:intergenic 35.0%
TATAGAGGAGTAAAAGGTGA+AGG - tig0028439:13349-13368 Msa1437980:intergenic 35.0%
ACATGCTATAGAGGAGTAAA+AGG - tig0028439:13355-13374 Msa1437980:intergenic 35.0%
GAATGCTAGTGATATTACCA+CGG - tig0028439:13584-13603 Msa1437980:intergenic 35.0%
!! AGCAAAGGCTTTAAGCTATA+TGG + tig0028439:13913-13932 Msa1437980:three_prime_UTR 35.0%
GTAACACAGTTGTAGCAATA+CGG - tig0028439:13953-13972 Msa1437980:intergenic 35.0%
TGTGTGTGTATTGTACGAAG+AGG - tig0028439:8053-8072 None:intergenic 40.0%
AAGAAGGAGAGGAAGAAATG+GGG - tig0028439:8156-8175 None:intergenic 40.0%
! GGTGGTGATGATGAATAAGA+AGG - tig0028439:8172-8191 None:intergenic 40.0%
AGTTACCAGAGGGAAAAGAT+GGG - tig0028439:8224-8243 Msa1437980:intergenic 40.0%
TAGTTACCAGAGGGAAAAGA+TGG - tig0028439:8225-8244 Msa1437980:intergenic 40.0%
! ACCGAGTACTTTTGCATGTT+TGG + tig0028439:8249-8268 Msa1437980:intron 40.0%
TCCTCATACCACATTAACTG+CGG + tig0028439:8455-8474 Msa1437980:CDS 40.0%
!!! AAGCGGAGAGTTTTTTCTGA+GGG - tig0028439:8587-8606 Msa1437980:intergenic 40.0%
AGAACGCCAGTTGAAAATGA+TGG - tig0028439:8756-8775 Msa1437980:intergenic 40.0%
TCATACGAAGCGGAATTTAC+AGG - tig0028439:8914-8933 Msa1437980:intergenic 40.0%
GGAGTTAGAATCATACGAAG+CGG - tig0028439:8924-8943 Msa1437980:intergenic 40.0%
TCGTATGATTCTAACTCCAC+CGG + tig0028439:8926-8945 Msa1437980:CDS 40.0%
! AAGAATGAAGTTTTCACCGG+TGG - tig0028439:8945-8964 Msa1437980:intergenic 40.0%
GCCGAATTTATCAGTATCGT+TGG - tig0028439:9023-9042 Msa1437980:intergenic 40.0%
ACGATACTGATAAATTCGGC+CGG + tig0028439:9023-9042 Msa1437980:CDS 40.0%
TCTGACAATTTCTTCCGGTT+CGG - tig0028439:9077-9096 Msa1437980:intergenic 40.0%
! CTCCTTTTCAGTACCATTCA+CGG - tig0028439:9119-9138 Msa1437980:intergenic 40.0%
TCCGATGAAGCTTTACCAAA+CGG + tig0028439:9150-9169 Msa1437980:CDS 40.0%
!! AAGTGCTATGAAGGCATTGA+AGG + tig0028439:9658-9677 Msa1437980:three_prime_UTR 40.0%
TTTATCATCACTCATACGGC+AGG - tig0028439:9765-9784 Msa1437980:intergenic 40.0%
TTGGTAGAAAAATGGACGGA+TGG + tig0028439:10082-10101 Msa1437980:intron 40.0%
TAGAAAAATGGACGGATGGA+TGG + tig0028439:10086-10105 Msa1437980:intron 40.0%
TACCCGAAGTTCATTATGCA+AGG - tig0028439:10158-10177 Msa1437980:intergenic 40.0%
TTCAGAAATCTTGGCAGTCA+AGG + tig0028439:10209-10228 Msa1437980:intron 40.0%
TTGGCAGTCAAGGCTTAAAA+GGG + tig0028439:10219-10238 Msa1437980:three_prime_UTR 40.0%
TTTACATCTTGCATACCGTG+CGG + tig0028439:10312-10331 Msa1437980:intron 40.0%
! CTAGAGTACCACTAAACATG+TGG - tig0028439:10407-10426 Msa1437980:intergenic 40.0%
TGCTGCACACAATTCAGAAA+AGG - tig0028439:10660-10679 Msa1437980:intergenic 40.0%
ACTTGAGTTCGAATTCCTTG+GGG + tig0028439:10760-10779 Msa1437980:three_prime_UTR 40.0%
GAGCACTTCATAGTTGTGTT+GGG - tig0028439:11140-11159 Msa1437980:intergenic 40.0%
TGAGCACTTCATAGTTGTGT+TGG - tig0028439:11141-11160 Msa1437980:intergenic 40.0%
AGAGCCGGTTAAGTGATTAT+TGG - tig0028439:11308-11327 Msa1437980:intergenic 40.0%
TACGAAGAGAAATACGGTTG+CGG - tig0028439:11598-11617 Msa1437980:intergenic 40.0%
TAGGTTACCATTCAATAGCC+TGG - tig0028439:11725-11744 Msa1437980:intergenic 40.0%
GCTATTGAATGGTAACCTAC+TGG + tig0028439:11726-11745 Msa1437980:three_prime_UTR 40.0%
TTGAATGGTAACCTACTGGA+AGG + tig0028439:11730-11749 Msa1437980:three_prime_UTR 40.0%
CCAACAGAATAAAGTTGCTC+TGG - tig0028439:11763-11782 Msa1437980:intergenic 40.0%
CCAGAGCAACTTTATTCTGT+TGG + tig0028439:11760-11779 Msa1437980:three_prime_UTR 40.0%
GATAACTACTTTAGCCACAG+TGG + tig0028439:11982-12001 Msa1437980:intron 40.0%
!! GACAATTTTAGCCAGAGCAT+CGG - tig0028439:12100-12119 Msa1437980:intergenic 40.0%
ATTCAGTCTCTCAAGCAACA+AGG + tig0028439:12279-12298 Msa1437980:intron 40.0%
TTCAGTCTCTCAAGCAACAA+GGG + tig0028439:12280-12299 Msa1437980:intron 40.0%
TACTCACCCATTACTTCATG+GGG - tig0028439:12478-12497 Msa1437980:intergenic 40.0%
GTACTCACCCATTACTTCAT+GGG - tig0028439:12479-12498 Msa1437980:intergenic 40.0%
TGTACTCACCCATTACTTCA+TGG - tig0028439:12480-12499 Msa1437980:intergenic 40.0%
!! CATGGTGGATTTCAGAATCA+CGG + tig0028439:12661-12680 Msa1437980:intron 40.0%
TGCATGTTTGATATCACGGT+GGG - tig0028439:12710-12729 Msa1437980:intergenic 40.0%
ATGCATGTTTGATATCACGG+TGG - tig0028439:12711-12730 Msa1437980:intergenic 40.0%
GTCTTCAATGTTCATGCCAA+AGG - tig0028439:12831-12850 Msa1437980:intergenic 40.0%
AAAAGGTGAAGGGAATCCTT+TGG - tig0028439:13338-13357 Msa1437980:intergenic 40.0%
! AATGCTGCTTCATCACAATG+AGG + tig0028439:13492-13511 Msa1437980:three_prime_UTR 40.0%
TGCGCATTTGACGATGATTT+CGG + tig0028439:13538-13557 Msa1437980:three_prime_UTR 40.0%
ATTTCGGACCATCGTATAAG+AGG + tig0028439:13554-13573 Msa1437980:three_prime_UTR 40.0%
GTTACCAGAGGGAAAAGATG+GGG - tig0028439:8223-8242 Msa1437980:intergenic 45.0%
TCGGTAGAGTAGTTACCAGA+GGG - tig0028439:8234-8253 Msa1437980:intergenic 45.0%
!! TTGAAGTGCCGCAGTTAATG+TGG - tig0028439:8466-8485 Msa1437980:intergenic 45.0%
AGAGCCATGTTGTGTTGAAG+GGG - tig0028439:8502-8521 Msa1437980:intergenic 45.0%
GAGAGCCATGTTGTGTTGAA+GGG - tig0028439:8503-8522 Msa1437980:intergenic 45.0%
! TTTCTGAGGGGAGGTTGAAA+CGG - tig0028439:8574-8593 Msa1437980:intergenic 45.0%
!!! AGCGGAGAGTTTTTTCTGAG+GGG - tig0028439:8586-8605 Msa1437980:intergenic 45.0%
!!! GAAGCGGAGAGTTTTTTCTG+AGG - tig0028439:8588-8607 Msa1437980:intergenic 45.0%
!!! GTAGCAGTTTTTTTTGCCGG+AGG - tig0028439:8624-8643 Msa1437980:intergenic 45.0%
TAGCGAGAAGAAGGAAGTGA+GGG - tig0028439:8653-8672 Msa1437980:intergenic 45.0%
!! CCAGTTGAAAATGATGGTGG+AGG - tig0028439:8750-8769 Msa1437980:intergenic 45.0%
! CCTCCACCATCATTTTCAAC+TGG + tig0028439:8747-8766 Msa1437980:CDS 45.0%
ACGCCAGTTGAAAATGATGG+TGG - tig0028439:8753-8772 Msa1437980:intergenic 45.0%
! TTTTCAACTGGCGTTCTCCA+TGG + tig0028439:8759-8778 Msa1437980:CDS 45.0%
TGATGAGATGATCGGAGCAT+CGG - tig0028439:8879-8898 Msa1437980:intergenic 45.0%
AACTACGGTAGAGTTTCGTG+CGG + tig0028439:8968-8987 Msa1437980:CDS 45.0%
! ATCAGTATCGTTGGTGAAGC+CGG - tig0028439:9014-9033 Msa1437980:intergenic 45.0%
!! CAATTTCTTCCGGTTCGGTT+CGG - tig0028439:9072-9091 Msa1437980:intergenic 45.0%
TCAACAGAGAACACCGTGAA+TGG + tig0028439:9103-9122 Msa1437980:CDS 45.0%
! CACCGTGAATGGTACTGAAA+AGG + tig0028439:9114-9133 Msa1437980:CDS 45.0%
GCCGTTTGGTAAAGCTTCAT+CGG - tig0028439:9154-9173 Msa1437980:intergenic 45.0%
GATGAAGCTTTACCAAACGG+CGG + tig0028439:9153-9172 Msa1437980:CDS 45.0%
GTTGGAGTACGAATTGAGTG+TGG + tig0028439:9195-9214 Msa1437980:CDS 45.0%
ATTGAGTGTGGATGCGAAGA+TGG + tig0028439:9207-9226 Msa1437980:CDS 45.0%
!! GGATGCGAAGATGGACTATA+TGG + tig0028439:9216-9235 Msa1437980:CDS 45.0%
!! CGAAGATGGACTATATGGTG+TGG + tig0028439:9221-9240 Msa1437980:CDS 45.0%
!! TCTGGTGCTCCTTTGATTTG+TGG + tig0028439:9432-9451 Msa1437980:three_prime_UTR 45.0%
AAAACCTTGAAGAGGGTGAG+TGG - tig0028439:9493-9512 Msa1437980:intergenic 45.0%
! CTTCGAGTTCCAGGTAGAAT+GGG + tig0028439:9686-9705 Msa1437980:three_prime_UTR 45.0%
TCCTACAACTTGGGATGCTT+GGG + tig0028439:9730-9749 Msa1437980:three_prime_UTR 45.0%
CCTTACACTTGACTAAAGGC+AGG - tig0028439:10041-10060 Msa1437980:intergenic 45.0%
CCTGCCTTTAGTCAAGTGTA+AGG + tig0028439:10038-10057 Msa1437980:intron 45.0%
AAAATGGACGGATGGATGGT+TGG + tig0028439:10090-10109 Msa1437980:intron 45.0%
CTTGGCAGTCAAGGCTTAAA+AGG + tig0028439:10218-10237 Msa1437980:three_prime_UTR 45.0%
GGCAGCTGATCATACTTACA+GGG - tig0028439:10285-10304 Msa1437980:intergenic 45.0%
AGGCAGCTGATCATACTTAC+AGG - tig0028439:10286-10305 Msa1437980:intergenic 45.0%
ACCTCACCTGCATTTACTTG+AGG + tig0028439:10576-10595 Msa1437980:intron 45.0%
TCCTCAAGTAAATGCAGGTG+AGG - tig0028439:10580-10599 Msa1437980:intergenic 45.0%
AGAACACTCCAGCAATTGCA+AGG + tig0028439:10606-10625 Msa1437980:intron 45.0%
CTTGAGTTCGAATTCCTTGG+GGG + tig0028439:10761-10780 Msa1437980:three_prime_UTR 45.0%
TTGAGTTCGAATTCCTTGGG+GGG + tig0028439:10762-10781 Msa1437980:three_prime_UTR 45.0%
GGTGAAATACCATCAGGACT+GGG + tig0028439:10783-10802 Msa1437980:three_prime_UTR 45.0%
! GATTTTTGACCCAGTCCTGA+TGG - tig0028439:10795-10814 Msa1437980:intergenic 45.0%
CAAACTGTCAGGTATAGAGC+CGG - tig0028439:11323-11342 Msa1437980:intergenic 45.0%
GTTGAAGATGCCAAACTGTC+AGG - tig0028439:11334-11353 Msa1437980:intergenic 45.0%
! TACGGTAAAAGAAAAGCGCG+CGG - tig0028439:11457-11476 Msa1437980:intergenic 45.0%
GCATAAAAGAGACACAGGTG+AGG - tig0028439:11665-11684 Msa1437980:intergenic 45.0%
CTTTATTCTGTTGGCGTGCA+CGG + tig0028439:11769-11788 Msa1437980:three_prime_UTR 45.0%
AAGAAGCAGCATAACCACTG+TGG - tig0028439:11999-12018 Msa1437980:intergenic 45.0%
TCAAGCAACAAGGGTTTGTG+TGG + tig0028439:12289-12308 Msa1437980:three_prime_UTR 45.0%
!!! TGTCCTATGTTTTGGGAGCA+TGG + tig0028439:12331-12350 Msa1437980:three_prime_UTR 45.0%
TGGTCTACCCCATGAAGTAA+TGG + tig0028439:12468-12487 Msa1437980:three_prime_UTR 45.0%
GGTCTACCCCATGAAGTAAT+GGG + tig0028439:12469-12488 Msa1437980:three_prime_UTR 45.0%
! TCTGTTGCTGACTATGCTGT+TGG + tig0028439:12577-12596 Msa1437980:intron 45.0%
TGGGTTTGTCAAAATCACGG+TGG - tig0028439:12691-12710 Msa1437980:intergenic 45.0%
! CGGTGGGTTTGTCAAAATCA+CGG - tig0028439:12694-12713 Msa1437980:intergenic 45.0%
ACTGACAAAGGAACTGCCTT+TGG + tig0028439:12812-12831 Msa1437980:intron 45.0%
GTTCCATTATGTGCTCAAGG+TGG + tig0028439:12916-12935 Msa1437980:intron 45.0%
TTGCCACCTTGAGCACATAA+TGG - tig0028439:12922-12941 Msa1437980:intergenic 45.0%
TGTGCAAACCACCACTATGA+AGG - tig0028439:13071-13090 Msa1437980:intergenic 45.0%
AGCACAGGCTTCAATATCCA+AGG - tig0028439:13212-13231 Msa1437980:intergenic 45.0%
CACTAAACTCGCAGCTGAAA+TGG - tig0028439:13652-13671 Msa1437980:intergenic 45.0%
AAAAGATGGGGTTGGAGTGG+AGG - tig0028439:8211-8230 None:intergenic 50.0%
CTCGGTAGAGTAGTTACCAG+AGG - tig0028439:8235-8254 Msa1437980:intergenic 50.0%
GCCGCAGTTAATGTGGTATG+AGG - tig0028439:8459-8478 Msa1437980:intergenic 50.0%
CAGACCCCTTCAACACAACA+TGG + tig0028439:8495-8514 Msa1437980:CDS 50.0%
GGAGAGCCATGTTGTGTTGA+AGG - tig0028439:8504-8523 Msa1437980:intergenic 50.0%
!!! GGAGAGTTTTTTCTGAGGGG+AGG - tig0028439:8583-8602 Msa1437980:intergenic 50.0%
!!! GTTTTTTTTGCCGGAGGAGG+AGG - tig0028439:8618-8637 Msa1437980:intergenic 50.0%
!!! GCAGTTTTTTTTGCCGGAGG+AGG - tig0028439:8621-8640 Msa1437980:intergenic 50.0%
AGCGAGAAGAAGGAAGTGAG+GGG - tig0028439:8652-8671 Msa1437980:intergenic 50.0%
GTAGCGAGAAGAAGGAAGTG+AGG - tig0028439:8654-8673 Msa1437980:intergenic 50.0%
GTAGTTGTCGTAGACGGTGA+AGG - tig0028439:8687-8706 Msa1437980:intergenic 50.0%
TGCGTCGTAGTTGTCGTAGA+CGG - tig0028439:8693-8712 Msa1437980:intergenic 50.0%
GTAGAAGCAAAGATCAGCGG+CGG - tig0028439:8846-8865 Msa1437980:intergenic 50.0%
GCCGCTGATCTTTGCTTCTA+CGG + tig0028439:8845-8864 Msa1437980:CDS 50.0%
GCCGTAGAAGCAAAGATCAG+CGG - tig0028439:8849-8868 Msa1437980:intergenic 50.0%
CTGATAAATTCGGCCGGTCA+TGG + tig0028439:9029-9048 Msa1437980:CDS 50.0%
!! TCGGTTCGGAATGCTTCATC+CGG - tig0028439:9058-9077 Msa1437980:intergenic 50.0%
! TGAAGCATTCCGAACCGAAC+CGG + tig0028439:9060-9079 Msa1437980:CDS 50.0%
TATGGTGTGGCTGCATTTCG+CGG + tig0028439:9234-9253 Msa1437980:CDS 50.0%
TGTCTAGTGCCTGACATGTG+TGG + tig0028439:9555-9574 Msa1437980:intron 50.0%
TCCACTGATCCACACATGTC+AGG - tig0028439:9567-9586 Msa1437980:intergenic 50.0%
! AAGGAATCGCTTCGAGTTCC+AGG + tig0028439:9677-9696 Msa1437980:three_prime_UTR 50.0%
! GCTTCGAGTTCCAGGTAGAA+TGG + tig0028439:9685-9704 Msa1437980:three_prime_UTR 50.0%
GAGTTCCAGGTAGAATGGGA+TGG + tig0028439:9690-9709 Msa1437980:three_prime_UTR 50.0%
CCATTCCATCCCATTCTACC+TGG - tig0028439:9698-9717 Msa1437980:intergenic 50.0%
CCAGGTAGAATGGGATGGAA+TGG + tig0028439:9695-9714 Msa1437980:three_prime_UTR 50.0%
ATCCCTGTGCTCCTACAACT+TGG + tig0028439:9720-9739 Msa1437980:three_prime_UTR 50.0%
TCCCTGTGCTCCTACAACTT+GGG + tig0028439:9721-9740 Msa1437980:three_prime_UTR 50.0%
! TCCCAAGTTGTAGGAGCACA+GGG - tig0028439:9725-9744 Msa1437980:intergenic 50.0%
! ATCCCAAGTTGTAGGAGCAC+AGG - tig0028439:9726-9745 Msa1437980:intergenic 50.0%
CTCCTACAACTTGGGATGCT+TGG + tig0028439:9729-9748 Msa1437980:three_prime_UTR 50.0%
TCCCAAGCATCCCAAGTTGT+AGG - tig0028439:9734-9753 Msa1437980:intergenic 50.0%
ACAACTTGGGATGCTTGGGA+AGG + tig0028439:9734-9753 Msa1437980:three_prime_UTR 50.0%
TGATGGTATTTCACCCCCCA+AGG - tig0028439:10778-10797 Msa1437980:intergenic 50.0%
TTGGGGGGTGAAATACCATC+AGG + tig0028439:10777-10796 Msa1437980:three_prime_UTR 50.0%
GGGTGAAATACCATCAGGAC+TGG + tig0028439:10782-10801 Msa1437980:three_prime_UTR 50.0%
CGGCTCTATACCTGACAGTT+TGG + tig0028439:11321-11340 Msa1437980:three_prime_UTR 50.0%
GTCTCTGCCAGGCTATTGAA+TGG + tig0028439:11715-11734 Msa1437980:intron 50.0%
!!! CCTATGTTTTGGGAGCATGG+CGG + tig0028439:12334-12353 Msa1437980:three_prime_UTR 50.0%
!! AGCATGGCGGATTATCGACT+CGG + tig0028439:12347-12366 Msa1437980:three_prime_UTR 50.0%
GGCAGTTCCTTTGTCAGTAC+AGG - tig0028439:12810-12829 Msa1437980:intergenic 50.0%
! TGGTGGTTTGCACATAGCTC+CGG + tig0028439:13077-13096 Msa1437980:intron 50.0%
AGCAGCATTGCATTGCGTCA+AGG - tig0028439:13481-13500 Msa1437980:intergenic 50.0%
ACGGCATGCCTCTTATACGA+TGG - tig0028439:13565-13584 Msa1437980:intergenic 50.0%
! ATCGTATAAGAGGCATGCCG+TGG + tig0028439:13564-13583 Msa1437980:three_prime_UTR 50.0%
TCAGCTGCGAGTTTAGTGTC+CGG + tig0028439:13654-13673 Msa1437980:three_prime_UTR 50.0%
GGGAAAAGATGGGGTTGGAG+TGG - tig0028439:8214-8233 None:intergenic 55.0%
CCAGAGGGAAAAGATGGGGT+TGG - tig0028439:8219-8238 None:intergenic 55.0%
! CCAACCCCATCTTTTCCCTC+TGG + tig0028439:8216-8235 Msa1437980:CDS 55.0%
CTCTCCGACCGTTACTACAC+CGG + tig0028439:8518-8537 Msa1437980:CDS 55.0%
AGGAGGAGGAAGGGAAGAAG+CGG - tig0028439:8604-8623 Msa1437980:intergenic 55.0%
TTCTTCCCTTCCTCCTCCTC+CGG + tig0028439:8605-8624 Msa1437980:CDS 55.0%
! TTTTGCCGGAGGAGGAGGAA+GGG - tig0028439:8613-8632 Msa1437980:intergenic 55.0%
! TTTTTGCCGGAGGAGGAGGA+AGG - tig0028439:8614-8633 Msa1437980:intergenic 55.0%
TGTCGTAGACGGTGAAGGTG+CGG - tig0028439:8682-8701 Msa1437980:intergenic 55.0%
AGTGCAACGTCGAAGGAAGG+AGG - tig0028439:8725-8744 Msa1437980:intergenic 55.0%
! GAGAGTGCAACGTCGAAGGA+AGG - tig0028439:8728-8747 Msa1437980:intergenic 55.0%
AAGCAAAGATCAGCGGCGGA+GGG - tig0028439:8842-8861 Msa1437980:intergenic 55.0%
TTACCAAACGGCGGTGACGA+CGG + tig0028439:9162-9181 Msa1437980:CDS 55.0%
CCTTGAAGAGGGTGAGTGGA+AGG - tig0028439:9489-9508 Msa1437980:intergenic 55.0%
CCTTCCACTCACCCTCTTCA+AGG + tig0028439:9486-9505 Msa1437980:three_prime_UTR 55.0%
GCCTGACATGTGTGGATCAG+TGG + tig0028439:9563-9582 Msa1437980:intron 55.0%
AGTGAGACAACGCCAGATCC+AGG - tig0028439:11574-11593 Msa1437980:intergenic 55.0%
GTGAGGCTGCACTAAAGGTC+GGG - tig0028439:11648-11667 Msa1437980:intergenic 55.0%
GGTGAGGCTGCACTAAAGGT+CGG - tig0028439:11649-11668 Msa1437980:intergenic 55.0%
CACAGGTGAGGCTGCACTAA+AGG - tig0028439:11653-11672 Msa1437980:intergenic 55.0%
TATTCTGTTGGCGTGCACGG+TGG + tig0028439:11772-11791 Msa1437980:three_prime_UTR 55.0%
!! AGCATCGGTGCAAAACCGGT+AGG - tig0028439:12085-12104 Msa1437980:intergenic 55.0%
!! CCAGAGCATCGGTGCAAAAC+CGG - tig0028439:12089-12108 Msa1437980:intergenic 55.0%
CCGCCATGCTCCCAAAACAT+AGG - tig0028439:12337-12356 Msa1437980:intergenic 55.0%
!! GCATGGCGGATTATCGACTC+GGG + tig0028439:12348-12367 Msa1437980:three_prime_UTR 55.0%
!! CATGGCGGATTATCGACTCG+GGG + tig0028439:12349-12368 Msa1437980:three_prime_UTR 55.0%
TTTCTGCGTGGTACTGCTGC+TGG + tig0028439:12405-12424 Msa1437980:three_prime_UTR 55.0%
CTGGAGAGTCAACACGCCAA+AGG + tig0028439:13319-13338 Msa1437980:three_prime_UTR 55.0%
CATTGCGTCAAGGTCGAGCA+GGG - tig0028439:13471-13490 Msa1437980:intergenic 55.0%
AGTGGAGGTGGAGGTGGAGA+TGG - tig0028439:8196-8215 None:intergenic 60.0%
AGATGGGGTTGGAGTGGAGG+TGG - tig0028439:8208-8227 None:intergenic 60.0%
TCCGACCGTTACTACACCGG+CGG + tig0028439:8521-8540 Msa1437980:CDS 60.0%
GAAACGGAGTGGCTCCGAGA+CGG - tig0028439:8558-8577 Msa1437980:intergenic 60.0%
GAGGGGAGGTTGAAACGGAG+TGG - tig0028439:8569-8588 Msa1437980:intergenic 60.0%
CGGAGGAGGTAGCGAGAAGA+AGG - tig0028439:8662-8681 Msa1437980:intergenic 60.0%
! GGAGGAGAGTGCAACGTCGA+AGG - tig0028439:8732-8751 Msa1437980:intergenic 60.0%
GAAGCAAAGATCAGCGGCGG+AGG - tig0028439:8843-8862 Msa1437980:intergenic 60.0%
GGTAGAGTTTCGTGCGGCTC+CGG + tig0028439:8974-8993 Msa1437980:CDS 60.0%
GTGCGGCTCCGGTGATCATT+GGG + tig0028439:8985-9004 Msa1437980:CDS 60.0%
TGCGGCTCCGGTGATCATTG+GGG + tig0028439:8986-9005 Msa1437980:CDS 60.0%
CTTCATCCGGCTGCCATGAC+CGG - tig0028439:9045-9064 Msa1437980:intergenic 60.0%
CTGGCACTCGTCCTTCCAGT+AGG - tig0028439:11744-11763 Msa1437980:intergenic 60.0%
!! CCGGTTTTGCACCGATGCTC+TGG + tig0028439:12086-12105 Msa1437980:intron 60.0%
GCATTGCGTCAAGGTCGAGC+AGG - tig0028439:13472-13491 Msa1437980:intergenic 60.0%
! GGTGGAGGTGGAGATGGTGG+TGG - tig0028439:8190-8209 None:intergenic 65.0%
GGAGGTGGAGGTGGAGATGG+TGG - tig0028439:8193-8212 None:intergenic 65.0%
GGTTGGAGTGGAGGTGGAGG+TGG - tig0028439:8202-8221 None:intergenic 65.0%
TGGGGTTGGAGTGGAGGTGG+AGG - tig0028439:8205-8224 None:intergenic 65.0%
GCCGCCGGTGTAGTAACGGT+CGG - tig0028439:8525-8544 Msa1437980:intergenic 65.0%
TGGCGCCGCCGGTGTAGTAA+CGG - tig0028439:8529-8548 Msa1437980:intergenic 65.0%
! AGACGGTGAAGGTGCGGAGG+AGG - tig0028439:8676-8695 Msa1437980:intergenic 65.0%
! CGTAGACGGTGAAGGTGCGG+AGG - tig0028439:8679-8698 Msa1437980:intergenic 65.0%
! CGTGCGGTGGATTCAGGCCA+TGG - tig0028439:8779-8798 Msa1437980:intergenic 65.0%
CCTGAATCCACCGCACGCGA+CGG + tig0028439:8782-8801 Msa1437980:CDS 65.0%
! AGCATAAGCGCCGTCGCGTG+CGG - tig0028439:8795-8814 Msa1437980:intergenic 65.0%
CGTGCGGCTCCGGTGATCAT+TGG + tig0028439:8984-9003 Msa1437980:CDS 65.0%
TCCGGTGATCATTGGGGCGC+CGG + tig0028439:8992-9011 Msa1437980:CDS 65.0%
ATTCGGCCGGTCATGGCAGC+CGG + tig0028439:9036-9055 Msa1437980:CDS 65.0%
GACGACGGAGGAGGAGACGT+TGG + tig0028439:9177-9196 Msa1437980:CDS 65.0%
! TGGCTCCGAGACGGTGGTGG+TGG - tig0028439:8549-8568 Msa1437980:intergenic 70.0%
GAGTGGCTCCGAGACGGTGG+TGG - tig0028439:8552-8571 Msa1437980:intergenic 70.0%
ACGGAGTGGCTCCGAGACGG+TGG - tig0028439:8555-8574 Msa1437980:intergenic 70.0%
! CCGTCGCGTGCGGTGGATTC+AGG - tig0028439:8785-8804 Msa1437980:intergenic 70.0%
! ATAAGCGCCGTCGCGTGCGG+TGG - tig0028439:8792-8811 Msa1437980:intergenic 70.0%
GCCGGCGCCCCAATGATCAC+CGG - tig0028439:8996-9015 Msa1437980:intergenic 70.0%
CCTCCGTCGTCACCGCCGTT+TGG - tig0028439:9168-9187 Msa1437980:intergenic 70.0%
CCAAACGGCGGTGACGACGG+AGG + tig0028439:9165-9184 Msa1437980:CDS 70.0%
AACGGCGGTGACGACGGAGG+AGG + tig0028439:9168-9187 Msa1437980:CDS 70.0%
CGGCGCCACCACCACCGTCT+CGG + tig0028439:8541-8560 Msa1437980:CDS 75.0%
!!! GACGGTGGTGGTGGCGCCGC+CGG - tig0028439:8540-8559 Msa1437980:intergenic 80.0%
Chromosome Type Strat End Strand Name
tig0028439 gene 8040 13979 8040 ID=Msa1437980;Name=Msa1437980
tig0028439 mRNA 8040 13979 8040 ID=Msa1437980-mRNA-1;Parent=Msa1437980;Name=Msa1437980-mRNA-1;_AED=0.02;_eAED=0.02;_QI=101|1|1|1|0.77|0.6|10|1512|324
tig0028439 exon 8040 8237 8040 ID=Msa1437980-mRNA-1:exon:11052;Parent=Msa1437980-mRNA-1
tig0028439 exon 8447 9507 8447 ID=Msa1437980-mRNA-1:exon:11053;Parent=Msa1437980-mRNA-1
tig0028439 exon 9657 9807 9657 ID=Msa1437980-mRNA-1:exon:11054;Parent=Msa1437980-mRNA-1
tig0028439 exon 10214 10285 10214 ID=Msa1437980-mRNA-1:exon:11055;Parent=Msa1437980-mRNA-1
tig0028439 exon 10758 10826 10758 ID=Msa1437980-mRNA-1:exon:11056;Parent=Msa1437980-mRNA-1
tig0028439 exon 11297 11365 11297 ID=Msa1437980-mRNA-1:exon:11057;Parent=Msa1437980-mRNA-1
tig0028439 exon 11726 11803 11726 ID=Msa1437980-mRNA-1:exon:11058;Parent=Msa1437980-mRNA-1
tig0028439 exon 12285 12490 12285 ID=Msa1437980-mRNA-1:exon:11059;Parent=Msa1437980-mRNA-1
tig0028439 exon 13263 13878 13263 ID=Msa1437980-mRNA-1:exon:11060;Parent=Msa1437980-mRNA-1
tig0028439 exon 13912 13979 13912 ID=Msa1437980-mRNA-1:exon:11061;Parent=Msa1437980-mRNA-1
tig0028439 five_prime_UTR 8040 8140 8040 ID=Msa1437980-mRNA-1:five_prime_utr;Parent=Msa1437980-mRNA-1
tig0028439 CDS 8141 8237 8141 ID=Msa1437980-mRNA-1:cds;Parent=Msa1437980-mRNA-1
tig0028439 CDS 8447 9324 8447 ID=Msa1437980-mRNA-1:cds;Parent=Msa1437980-mRNA-1
tig0028439 three_prime_UTR 9325 9507 9325 ID=Msa1437980-mRNA-1:three_prime_utr;Parent=Msa1437980-mRNA-1
tig0028439 three_prime_UTR 9657 9807 9657 ID=Msa1437980-mRNA-1:three_prime_utr;Parent=Msa1437980-mRNA-1
tig0028439 three_prime_UTR 10214 10285 10214 ID=Msa1437980-mRNA-1:three_prime_utr;Parent=Msa1437980-mRNA-1
tig0028439 three_prime_UTR 10758 10826 10758 ID=Msa1437980-mRNA-1:three_prime_utr;Parent=Msa1437980-mRNA-1
tig0028439 three_prime_UTR 11297 11365 11297 ID=Msa1437980-mRNA-1:three_prime_utr;Parent=Msa1437980-mRNA-1
tig0028439 three_prime_UTR 11726 11803 11726 ID=Msa1437980-mRNA-1:three_prime_utr;Parent=Msa1437980-mRNA-1
tig0028439 three_prime_UTR 12285 12490 12285 ID=Msa1437980-mRNA-1:three_prime_utr;Parent=Msa1437980-mRNA-1
tig0028439 three_prime_UTR 13263 13878 13263 ID=Msa1437980-mRNA-1:three_prime_utr;Parent=Msa1437980-mRNA-1
tig0028439 three_prime_UTR 13912 13979 13912 ID=Msa1437980-mRNA-1:three_prime_utr;Parent=Msa1437980-mRNA-1
Gene Sequence

>Msa1437980

ATGATTCAACTACCCCATTTCTTCCTCTCCTTCTTATTCATCATCACCACCACCATCTCCACCTCCACCTCCACTCCAACCCCATCTTTTCCCTCTGGTAACTTGTCCTCATACCACATTAACTGCGGCACTTCAACAAACATAACAGACCCCTTCAACACAACATGGCTCTCCGACCGTTACTACACCGGCGGCGCCACCACCACCGTCTCGGAGCCACTCCGTTTCAACCTCCCCTCAGAAAAAACTCTCCGCTTCTTCCCTTCCTCCTCCTCCGGCAAAAAAAACTGCTACTCATTCCCCTCACTTCCTTCTTCTCGCTACCTCCTCCGCACCTTCACCGTCTACGACAACTACGACGCAAAGTCTCGTCCTCCTTCCTTCGACGTTGCACTCTCCTCCACCATCATTTTCAACTGGCGTTCTCCATGGCCTGAATCCACCGCACGCGACGGCGCTTATGCTGATCTTTTCGCTTTTCTTCACACTCCCTCCGCCGCTGATCTTTGCTTCTACGGCTTCGCTACCGATGCTCCGATCATCTCATCAATCGAACTCATTCCTGTAAATTCCGCTTCGTATGATTCTAACTCCACCGGTGAAAACTTCATTCTTGTTAACTACGGTAGAGTTTCGTGCGGCTCCGGTGATCATTGGGGCGCCGGCTTCACCAACGATACTGATAAATTCGGCCGGTCATGGCAGCCGGATGAAGCATTCCGAACCGAACCGGAAGAAATTGTCAGAGTTTTATCAACAGAGAACACCGTGAATGGTACTGAAAAGGAGCCGAATTATTTTCCGATGAAGCTTTACCAAACGGCGGTGACGACGGAGGAGGAGACGTTGGAGTACGAATTGAGTGTGGATGCGAAGATGGACTATATGGTGTGGCTGCATTTCGCGGAGATTGATTCAAGTGTGAAAAAGAAGGAGAGAGAGTTTTTGATGTGTTTATCAATGGAAATAATGTAA
Protein sequence

>Msa1437980

MIQLPHFFLSFLFIITTTISTSTSTPTPSFPSGNLSSYHINCGTSTNITDPFNTTWLSDRYYTGGATTTVSEPLRFNLPSEKTLRFFPSSSSGKKNCYSFPSLPSSRYLLRTFTVYDNYDAKSRPPSFDVALSSTIIFNWRSPWPESTARDGAYADLFAFLHTPSAADLCFYGFATDAPIISSIELIPVNSASYDSNSTGENFILVNYGRVSCGSGDHWGAGFTNDTDKFGRSWQPDEAFRTEPEEIVRVLSTENTVNGTEKEPNYFPMKLYQTAVTTEEETLEYELSVDAKMDYMVWLHFAEIDSSVKKKEREFLMCLSMEIM*