AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0586530


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0586530 MtrunA17_Chr4g0011051 92.169 498 39 0 1 498 1 498 0.0 952
Msa0586530 MtrunA17_Chr7g0265101 81.377 494 88 4 1 493 1 491 0.0 828
Msa0586530 MtrunA17_Chr7g0265051 79.108 493 99 3 1 493 1 489 0.0 811
Msa0586530 MtrunA17_Chr7g0265151 60.324 494 182 8 1 489 1 485 0.0 588
Msa0586530 MtrunA17_Chr7g0265041 57.637 491 197 7 9 494 11 495 0.0 558
Msa0586530 MtrunA17_Chr7g0275681 57.669 489 195 6 2 489 5 482 0.0 553
Msa0586530 MtrunA17_Chr5g0419761 49.187 492 242 7 1 489 1 487 6.24e-165 476
Msa0586530 MtrunA17_Chr1g0179901 47.844 487 247 5 8 491 15 497 6.31e-164 473
Msa0586530 MtrunA17_Chr5g0419771 47.551 490 243 6 8 491 35 516 6.35e-164 474
Msa0586530 MtrunA17_Chr7g0265111 50.307 489 225 7 8 488 38 516 2.40e-152 445
Msa0586530 MtrunA17_Chr7g0265141 48.880 491 239 7 1 486 1 484 4.37e-151 440
Msa0586530 MtrunA17_Chr7g0243931 40.574 488 279 8 7 491 15 494 3.21e-114 346
Msa0586530 MtrunA17_Chr8g0366391 38.182 495 290 8 1 492 1 482 4.07e-114 345
Msa0586530 MtrunA17_Chr4g0044501 38.509 483 278 9 8 487 9 475 1.41e-109 334
Msa0586530 MtrunA17_Chr7g0243631 39.024 492 281 9 7 491 11 490 5.87e-109 333
Msa0586530 MtrunA17_Chr7g0243951 38.697 491 283 10 7 491 9 487 1.67e-107 329
Msa0586530 MtrunA17_Chr7g0243681 37.271 491 286 9 7 491 9 483 4.58e-107 328
Msa0586530 MtrunA17_Chr5g0401851 37.882 491 290 8 6 491 7 487 3.98e-106 325
Msa0586530 MtrunA17_Chr7g0243861 38.730 488 288 8 7 491 12 491 4.45e-106 325
Msa0586530 MtrunA17_Chr4g0060511 36.874 499 285 12 7 491 9 491 8.96e-106 324
Msa0586530 MtrunA17_Chr4g0066261 37.425 497 279 13 7 492 11 486 1.85e-105 323
Msa0586530 MtrunA17_Chr4g0044511 37.728 493 281 13 1 487 32 504 5.32e-104 320
Msa0586530 MtrunA17_Chr7g0235051 37.190 484 260 11 7 486 9 452 2.06e-103 317
Msa0586530 MtrunA17_Chr7g0243871 35.928 501 300 10 1 497 1 484 6.89e-103 317
Msa0586530 MtrunA17_Chr7g0243771 37.525 501 292 11 4 497 1 487 1.87e-102 315
Msa0586530 MtrunA17_Chr4g0066151 37.298 496 274 12 8 493 17 485 2.96e-102 315
Msa0586530 MtrunA17_Chr4g0066221 37.854 494 280 11 7 492 11 485 3.50e-102 315
Msa0586530 MtrunA17_Chr4g0044521 38.589 482 267 12 7 485 9 464 1.83e-100 310
Msa0586530 MtrunA17_Chr7g0243801 37.550 498 290 11 7 497 5 488 6.25e-100 309
Msa0586530 MtrunA17_Chr5g0416741 38.086 491 282 9 8 491 12 487 9.52e-100 309
Msa0586530 MtrunA17_Chr6g0463891 37.349 498 282 10 8 493 11 490 7.32e-99 306
Msa0586530 MtrunA17_Chr4g0066281 37.449 494 261 14 7 489 12 468 8.98e-98 303
Msa0586530 MtrunA17_Chr4g0066131 35.887 496 279 13 8 492 12 479 1.45e-97 303
Msa0586530 MtrunA17_Chr4g0066201 35.516 504 290 13 2 498 11 486 5.47e-97 301
Msa0586530 MtrunA17_Chr8g0355221 37.698 504 282 14 8 498 14 498 9.31e-97 301
Msa0586530 MtrunA17_Chr7g0243781 36.200 500 289 12 1 491 1 479 1.34e-96 300
Msa0586530 MtrunA17_Chr4g0066171 34.469 499 288 13 2 492 14 481 1.28e-95 298
Msa0586530 MtrunA17_Chr6g0463861 35.743 498 278 13 7 492 11 478 1.16e-94 295
Msa0586530 MtrunA17_Chr4g0014061 34.524 504 301 12 1 498 1 481 2.12e-94 295
Msa0586530 MtrunA17_Chr7g0243851 36.235 494 258 12 7 495 9 450 1.27e-92 289
Msa0586530 MtrunA17_Chr4g0044481 40.146 411 210 7 9 418 27 402 1.63e-92 288
Msa0586530 MtrunA17_Chr7g0243761 36.747 498 252 12 8 491 10 458 7.74e-92 287
Msa0586530 MtrunA17_Chr2g0294931 35.758 495 290 12 7 492 11 486 1.14e-91 288
Msa0586530 MtrunA17_Chr6g0463851 36.759 506 282 14 7 498 11 492 1.88e-91 287
Msa0586530 MtrunA17_Chr1g0165701 36.694 496 280 14 8 491 14 487 3.04e-91 287
Msa0586530 MtrunA17_Chr7g0218311 35.944 498 282 13 7 492 16 488 4.82e-91 286
Msa0586530 MtrunA17_Chr2g0294921 35.152 495 293 12 7 492 160 635 1.27e-89 287
Msa0586530 MtrunA17_Chr8g0374931 35.354 495 292 12 7 492 11 486 1.34e-89 282
Msa0586530 MtrunA17_Chr8g0374971 34.615 494 293 13 8 491 11 484 5.95e-89 281
Msa0586530 MtrunA17_Chr8g0374901 33.936 498 293 13 7 493 12 484 1.82e-86 274
Msa0586530 MtrunA17_Chr5g0428081 36.089 496 285 14 7 492 11 484 2.75e-86 274
Msa0586530 MtrunA17_Chr5g0410941 34.949 495 290 13 7 492 23 494 3.32e-85 271
Msa0586530 MtrunA17_Chr8g0374941 34.949 495 294 12 7 493 949 1423 4.55e-82 278
Msa0586530 MtrunA17_Chr8g0374941 35.579 475 278 13 7 473 11 465 2.16e-78 267
Msa0586530 MtrunA17_Chr8g0374941 35.456 471 276 14 7 469 476 926 3.74e-72 249
Msa0586530 MtrunA17_Chr5g0416821 36.111 504 267 15 8 493 13 479 2.73e-81 261
Msa0586530 MtrunA17_Chr8g0350881 34.269 499 292 13 8 493 11 486 4.25e-80 258
Msa0586530 MtrunA17_Chr7g0243811 36.047 430 221 13 21 432 1 394 1.45e-74 240
Msa0586530 MtrunA17_Chr2g0294941 37.883 359 204 7 122 472 17 364 1.08e-70 229
Msa0586530 MtrunA17_Chr5g0440421 30.724 511 313 16 3 490 4 496 1.38e-65 220
Msa0586530 MtrunA17_Chr2g0307961 33.936 498 278 18 5 488 9 469 1.37e-61 208
Msa0586530 MtrunA17_Chr8g0369341 30.938 501 301 15 7 493 5 474 1.77e-60 206
Msa0586530 MtrunA17_Chr4g0050341 31.400 500 278 15 9 479 19 482 2.56e-60 206
Msa0586530 MtrunA17_Chr7g0243611 38.854 314 169 9 128 438 2 295 8.39e-60 199
Msa0586530 MtrunA17_Chr7g0243711 41.129 248 137 6 248 491 78 320 1.56e-58 196
Msa0586530 MtrunA17_Chr7g0217881 31.643 493 294 15 4 488 5 462 9.96e-58 198
Msa0586530 MtrunA17_Chr3g0078841 30.814 516 286 17 7 492 8 482 2.56e-57 197
Msa0586530 MtrunA17_Chr5g0420801 28.513 491 316 11 7 493 5 464 6.33e-56 193
Msa0586530 MtrunA17_Chr8g0336331 29.880 502 308 14 7 492 8 481 6.88e-56 194
Msa0586530 MtrunA17_Chr6g0454181 29.354 511 302 14 7 492 8 484 2.54e-55 192
Msa0586530 MtrunA17_Chr6g0454301 30.545 514 282 17 7 488 261 731 7.62e-55 196
Msa0586530 MtrunA17_Chr6g0454301 35.200 250 136 6 245 490 5 232 7.11e-35 139
Msa0586530 MtrunA17_Chr6g0453951 29.191 507 300 15 7 488 55 527 2.20e-54 191
Msa0586530 MtrunA17_Chr6g0454401 29.921 508 296 15 7 488 8 481 5.91e-54 189
Msa0586530 MtrunA17_Chr8g0361411 29.741 501 291 16 6 492 5 458 1.22e-53 187
Msa0586530 MtrunA17_Chr6g0454331 29.231 520 301 15 5 494 3 485 2.69e-53 187
Msa0586530 MtrunA17_Chr6g0454141 29.688 512 299 15 7 492 8 484 6.82e-53 186
Msa0586530 MtrunA17_Chr6g0454341 28.008 507 312 14 7 492 8 482 1.52e-52 185
Msa0586530 MtrunA17_Chr2g0329111 28.125 512 317 15 7 497 4 485 1.88e-52 184
Msa0586530 MtrunA17_Chr5g0431361 28.776 490 290 13 9 487 12 453 4.68e-52 182
Msa0586530 MtrunA17_Chr6g0454261 29.563 504 314 16 7 494 8 486 7.43e-52 183
Msa0586530 MtrunA17_Chr6g0454191 28.627 517 299 14 7 492 8 485 1.24e-51 182
Msa0586530 MtrunA17_Chr6g0454151 29.941 511 289 17 7 488 8 478 1.52e-51 182
Msa0586530 MtrunA17_Chr6g0462531 29.876 482 288 15 11 476 6 453 1.57e-51 182
Msa0586530 MtrunA17_Chr6g0454321 30.120 498 275 15 7 473 8 463 3.70e-51 184
Msa0586530 MtrunA17_Chr7g0231631 39.286 280 139 6 219 491 8 263 5.34e-51 175
Msa0586530 MtrunA17_Chr2g0278711 28.968 504 309 15 7 492 9 481 7.39e-51 180
Msa0586530 MtrunA17_Chr6g0454351 30.156 514 281 18 1 488 4 465 8.16e-51 180
Msa0586530 MtrunA17_Chr6g0454361 29.518 498 310 14 7 488 9 481 8.95e-51 180
Msa0586530 MtrunA17_Chr8g0359821 28.767 511 307 16 7 494 8 484 1.41e-50 179
Msa0586530 MtrunA17_Chr6g0464841 30.165 484 287 19 9 484 11 451 3.15e-50 178
Msa0586530 MtrunA17_Chr1g0159551 28.367 490 290 16 14 489 19 461 4.37e-50 177
Msa0586530 MtrunA17_Chr6g0464871 30.785 484 284 21 9 484 23 463 5.14e-50 177
Msa0586530 MtrunA17_Chr6g0454121 29.183 514 298 15 7 492 8 483 2.07e-49 176
Msa0586530 MtrunA17_Chr3g0092641 28.169 497 310 14 9 488 12 478 3.16e-49 176
Msa0586530 MtrunA17_Chr6g0453961 28.094 509 306 14 6 488 16 490 3.32e-49 176
Msa0586530 MtrunA17_Chr6g0454201 28.988 514 300 15 7 492 9 485 3.51e-49 176
Msa0586530 MtrunA17_Chr1g0173121 28.138 494 295 16 11 489 16 464 4.54e-49 175
Msa0586530 MtrunA17_Chr6g0462571 28.834 489 281 16 11 476 6 450 5.79e-49 175
Msa0586530 MtrunA17_Chr8g0373301 30.435 483 258 16 36 476 9 455 1.71e-48 173
Msa0586530 MtrunA17_Chr6g0454291 29.297 512 297 15 5 488 3 477 2.35e-48 173
Msa0586530 MtrunA17_Chr7g0243911 41.837 196 109 3 278 471 22 214 2.44e-48 166
Msa0586530 MtrunA17_Chr6g0464861 30.722 485 282 21 9 484 11 450 2.86e-48 172
Msa0586530 MtrunA17_Chr5g0431371 29.814 483 291 16 9 487 10 448 3.94e-48 172
Msa0586530 MtrunA17_Chr3g0112761 27.689 502 286 13 9 490 8 452 7.79e-48 171
Msa0586530 MtrunA17_Chr5g0426431 29.518 498 302 14 9 488 12 478 8.00e-48 172
Msa0586530 MtrunA17_Chr6g0452771 29.940 501 304 18 7 488 8 480 8.03e-48 172
Msa0586530 MtrunA17_Chr5g0442541 27.291 502 307 12 7 488 3 466 1.66e-47 171
Msa0586530 MtrunA17_Chr6g0454131 28.600 507 302 15 7 488 8 479 2.70e-47 171
Msa0586530 MtrunA17_Chr3g0118671 28.880 509 305 18 4 489 1 475 4.14e-47 170
Msa0586530 MtrunA17_Chr7g0232391 27.823 496 285 19 8 476 5 454 4.89e-47 169
Msa0586530 MtrunA17_Chr8g0336691 28.824 510 296 20 8 494 918 1383 6.17e-47 175
Msa0586530 MtrunA17_Chr8g0336691 27.634 503 296 18 4 481 8 467 6.53e-47 175
Msa0586530 MtrunA17_Chr8g0336691 28.279 488 276 19 8 481 479 906 1.60e-40 156
Msa0586530 MtrunA17_Chr5g0448521 27.200 500 312 14 7 488 3 468 6.38e-47 169
Msa0586530 MtrunA17_Chr8g0361371 29.191 507 270 16 7 476 5 459 8.22e-47 169
Msa0586530 MtrunA17_Chr5g0423981 28.367 490 293 14 6 488 7 445 9.74e-47 168
Msa0586530 MtrunA17_Chr3g0112771 27.273 495 305 16 11 497 14 461 1.29e-46 168
Msa0586530 MtrunA17_Chr6g0454211 28.764 518 304 14 5 494 293 773 1.72e-46 172
Msa0586530 MtrunA17_Chr6g0454211 27.660 282 138 11 129 390 1 236 8.76e-20 92.8
Msa0586530 MtrunA17_Chr7g0232411 27.888 502 287 21 8 481 5 459 3.00e-46 167
Msa0586530 MtrunA17_Chr8g0382021 29.532 491 292 19 14 489 39 490 3.72e-46 167
Msa0586530 MtrunA17_Chr5g0431401 28.367 490 297 17 5 487 6 448 8.15e-46 166
Msa0586530 MtrunA17_Chr3g0118691 27.701 509 309 13 7 491 13 486 9.50e-46 166
Msa0586530 MtrunA17_Chr8g0377921 28.685 502 291 17 11 488 6 464 1.08e-45 166
Msa0586530 MtrunA17_Chr5g0414321 29.142 501 287 20 8 493 10 457 1.14e-45 166
Msa0586530 MtrunA17_Chr8g0336651 28.039 510 302 17 8 494 780 1247 1.62e-45 171
Msa0586530 MtrunA17_Chr8g0336651 25.761 493 306 15 4 476 1 453 1.75e-37 147
Msa0586530 MtrunA17_Chr8g0336651 34.091 264 130 8 220 481 547 768 9.67e-37 145
Msa0586530 MtrunA17_Chr5g0431421 29.039 489 297 15 5 488 6 449 2.66e-45 164
Msa0586530 MtrunA17_Chr6g0462541 27.677 495 281 18 11 476 6 452 3.11e-45 165
Msa0586530 MtrunA17_Chr6g0464881 27.800 500 296 17 9 493 11 460 6.95e-45 163
Msa0586530 MtrunA17_Chr7g0275511 28.515 505 290 18 6 482 12 473 8.10e-45 164
Msa0586530 MtrunA17_Chr8g0370941 25.806 527 305 15 9 493 8 490 1.04e-44 164
Msa0586530 MtrunA17_Chr8g0335141 28.429 503 287 17 1 476 1 457 1.20e-44 163
Msa0586530 MtrunA17_Chr5g0431441 27.755 490 303 12 9 488 18 466 1.61e-44 162
Msa0586530 MtrunA17_Chr1g0207981 28.543 508 298 21 4 488 8 473 2.05e-44 162
Msa0586530 MtrunA17_Chr6g0462521 37.736 265 131 7 220 476 201 439 2.40e-44 162
Msa0586530 MtrunA17_Chr6g0462551 28.629 496 278 18 10 476 5 453 2.58e-44 162
Msa0586530 MtrunA17_Chr8g0339601 37.455 275 133 8 218 475 66 318 2.65e-44 159
Msa0586530 MtrunA17_Chr8g0339451 36.957 276 135 7 218 476 199 452 2.87e-44 162
Msa0586530 MtrunA17_Chr5g0414331 29.098 488 286 18 8 484 12 450 2.88e-44 162
Msa0586530 MtrunA17_Chr7g0232401 27.022 507 291 17 8 483 5 463 3.13e-44 162
Msa0586530 MtrunA17_Chr8g0347271 28.337 487 291 17 11 480 21 466 4.12e-44 162
Msa0586530 MtrunA17_Chr8g0339631 34.520 281 146 8 218 483 207 464 5.52e-44 161
Msa0586530 MtrunA17_Chr3g0106231 27.291 502 278 16 9 489 18 453 7.99e-44 161
Msa0586530 MtrunA17_Chr5g0442561 27.613 507 306 18 7 488 3 473 1.07e-43 160
Msa0586530 MtrunA17_Chr1g0153451 26.386 523 297 20 4 494 1 467 1.30e-43 160
Msa0586530 MtrunA17_Chr5g0442601 28.125 512 301 17 7 488 402 876 1.65e-43 164
Msa0586530 MtrunA17_Chr5g0442601 26.518 313 168 9 121 413 63 333 6.80e-23 102
Msa0586530 MtrunA17_Chr8g0357361 40.796 201 112 4 218 418 61 254 1.68e-43 155
Msa0586530 MtrunA17_Chr1g0207971 28.032 503 291 20 8 491 7 457 2.01e-43 159
Msa0586530 MtrunA17_Chr8g0339461 36.232 276 137 7 218 476 207 460 4.35e-43 159
Msa0586530 MtrunA17_Chr5g0412131 28.543 494 302 18 9 487 12 469 5.36e-43 159
Msa0586530 MtrunA17_Chr7g0232341 28.205 507 299 20 9 490 6 472 6.27e-43 158
Msa0586530 MtrunA17_Chr6g0449931 28.032 503 285 19 4 476 1 456 6.38e-43 158
Msa0586530 MtrunA17_Chr3g0098111 27.470 506 330 14 1 498 1 477 6.70e-43 158
Msa0586530 MtrunA17_Chr8g0334831 28.435 524 302 17 4 495 1 483 1.01e-42 158
Msa0586530 MtrunA17_Chr8g0380531 28.485 495 297 16 8 489 9 459 1.56e-42 157
Msa0586530 MtrunA17_Chr6g0459311 34.962 266 142 6 220 476 217 460 1.77e-42 157
Msa0586530 MtrunA17_Chr4g0053501 28.155 515 300 21 1 492 1 468 2.46e-42 157
Msa0586530 MtrunA17_Chr8g0347281 27.944 501 275 17 11 480 20 465 3.14e-42 157
Msa0586530 MtrunA17_Chr4g0066141 42.614 176 87 5 324 492 188 356 3.24e-42 154
Msa0586530 MtrunA17_Chr4g0066141 27.692 195 115 5 39 230 9 180 6.97e-15 76.3
Msa0586530 MtrunA17_Chr5g0429711 26.367 512 299 21 1 487 3 461 3.59e-42 156
Msa0586530 MtrunA17_Chr3g0118701 26.210 496 327 12 7 488 13 483 3.90e-42 156
Msa0586530 MtrunA17_Chr5g0412111 28.425 489 308 17 9 487 5 461 5.99e-42 155
Msa0586530 MtrunA17_Chr8g0336741 27.655 499 281 17 7 475 11 459 8.02e-42 155
Msa0586530 MtrunA17_Chr6g0486251 35.448 268 138 7 220 476 210 453 1.02e-41 155
Msa0586530 MtrunA17_Chr6g0486201 35.448 268 138 7 220 476 210 453 1.02e-41 155
Msa0586530 MtrunA17_Chr7g0232331 27.866 506 299 19 9 490 6 469 1.16e-41 155
Msa0586530 MtrunA17_Chr1g0161351 28.088 502 307 19 8 491 36 501 1.35e-41 155
Msa0586530 MtrunA17_Chr5g0442581 26.459 514 307 17 7 488 3 477 1.65e-41 155
Msa0586530 MtrunA17_Chr8g0334861 36.029 272 136 7 220 476 204 452 2.09e-41 154
Msa0586530 MtrunA17_Chr3g0118711 27.059 510 305 18 7 488 11 481 2.37e-41 154
Msa0586530 MtrunA17_Chr3g0079731 32.526 289 154 6 218 485 210 478 2.43e-41 154
Msa0586530 MtrunA17_Chr2g0302991 27.254 488 300 20 19 489 15 464 3.80e-41 153
Msa0586530 MtrunA17_Chr8g0335161 27.767 515 280 19 4 481 1 460 5.42e-41 153
Msa0586530 MtrunA17_Chr7g0232311 31.410 312 168 10 177 476 175 452 6.24e-41 153
Msa0586530 MtrunA17_Chr5g0442491 27.308 509 307 16 7 488 3 475 9.66e-41 152
Msa0586530 MtrunA17_Chr6g0464921 27.071 495 295 19 9 487 11 455 1.05e-40 152
Msa0586530 MtrunA17_Chr7g0250001 27.000 500 298 20 4 488 1 448 1.99e-40 151
Msa0586530 MtrunA17_Chr3g0122001 27.290 513 307 17 2 487 479 952 2.37e-40 155
Msa0586530 MtrunA17_Chr3g0122001 27.720 386 245 9 119 487 105 473 1.82e-39 152
Msa0586530 MtrunA17_Chr5g0442521 26.562 512 308 15 7 488 3 476 2.86e-40 151
Msa0586530 MtrunA17_Chr7g0249931 27.236 492 305 16 8 490 39 486 4.44e-40 150
Msa0586530 MtrunA17_Chr8g0377941 29.948 384 224 12 119 489 112 463 4.62e-40 150
Msa0586530 MtrunA17_Chr5g0412101 29.920 498 291 20 9 487 12 470 9.86e-40 149
Msa0586530 MtrunA17_Chr8g0365811 27.455 499 308 18 7 487 495 957 1.54e-39 153
Msa0586530 MtrunA17_Chr8g0365811 27.650 434 275 14 1 416 1 413 6.62e-33 133
Msa0586530 MtrunA17_Chr5g0442511 34.397 282 154 7 220 487 229 493 1.75e-39 149
Msa0586530 MtrunA17_Chr8g0336731 27.237 503 301 17 11 492 34 492 1.99e-39 149
Msa0586530 MtrunA17_Chr7g0218791 27.495 491 270 20 9 474 5 434 2.64e-39 148
Msa0586530 MtrunA17_Chr3g0118771 27.419 496 321 14 7 488 19 489 2.95e-39 149
Msa0586530 MtrunA17_Chr1g0207861 28.715 498 299 19 9 487 8 468 3.03e-39 148
Msa0586530 MtrunA17_Chr4g0053321 27.660 517 298 21 1 492 18 483 4.82e-39 148
Msa0586530 MtrunA17_Chr7g0249981 28.081 495 293 19 7 488 23 467 5.28e-39 148
Msa0586530 MtrunA17_Chr8g0339441 35.985 264 129 6 227 476 181 418 5.62e-39 147
Msa0586530 MtrunA17_Chr7g0218841 26.423 492 286 16 9 484 6 437 1.07e-38 146
Msa0586530 MtrunA17_Chr6g0454221 36.929 241 131 6 248 486 8 229 1.16e-38 142
Msa0586530 MtrunA17_Chr1g0207951 27.756 508 297 18 1 489 116 572 1.36e-38 150
Msa0586530 MtrunA17_Chr1g0207951 25.889 506 315 18 1 489 648 1110 5.98e-37 145
Msa0586530 MtrunA17_Chr2g0302961 33.688 282 153 11 220 489 208 467 1.45e-38 146
Msa0586530 MtrunA17_Chr3g0121991 26.733 505 326 15 2 490 72 548 1.53e-38 147
Msa0586530 MtrunA17_Chr7g0218831 27.366 486 288 18 9 484 6 436 1.75e-38 145
Msa0586530 MtrunA17_Chr4g0032331 27.530 494 297 18 10 491 9 453 2.52e-38 145
Msa0586530 MtrunA17_Chr8g0334851 35.231 281 140 8 220 483 210 465 1.04e-37 144
Msa0586530 MtrunA17_Chr1g0207831 26.719 509 309 21 1 489 1 465 1.06e-37 144
Msa0586530 MtrunA17_Chr6g0454251 30.733 423 225 16 5 390 3 394 1.83e-37 142
Msa0586530 MtrunA17_Chr1g0153461 38.605 215 109 6 278 481 4 206 2.58e-37 136
Msa0586530 MtrunA17_Chr6g0454271 33.670 297 159 9 209 494 24 293 3.37e-37 138
Msa0586530 MtrunA17_Chr3g0118661 25.247 507 313 13 7 486 11 478 2.11e-36 140
Msa0586530 MtrunA17_Chr3g0106251 30.938 320 178 9 173 489 16 295 2.38e-36 137
Msa0586530 MtrunA17_Chr5g0403641 32.517 286 155 7 220 486 235 501 5.28e-36 140
Msa0586530 MtrunA17_Chr8g0355011 29.073 399 189 13 116 493 42 367 6.45e-36 137
Msa0586530 MtrunA17_Chr5g0432731 31.752 274 157 7 221 490 52 299 7.45e-36 135
Msa0586530 MtrunA17_Chr6g0454371 39.683 189 96 4 300 488 1 171 2.04e-35 130
Msa0586530 MtrunA17_Chr4g0072761 33.459 266 144 8 220 485 218 450 2.69e-35 137
Msa0586530 MtrunA17_Chr6g0454171 27.198 364 207 10 129 488 1 310 3.89e-35 133
Msa0586530 MtrunA17_Chr5g0409591 27.806 392 220 11 105 450 76 450 4.76e-35 137
Msa0586530 MtrunA17_Chr4g0040711 26.130 509 299 17 8 492 7 462 7.18e-35 136
Msa0586530 MtrunA17_Chr5g0429681 25.896 502 313 22 1 484 36 496 7.43e-35 136
Msa0586530 MtrunA17_Chr4g0040691 26.938 516 299 21 1 492 1 462 7.69e-35 135
Msa0586530 MtrunA17_Chr1g0207931 26.132 486 278 15 8 489 91 499 7.89e-35 136
Msa0586530 MtrunA17_Chr7g0218821 25.887 479 301 17 9 476 5 440 1.55e-34 135
Msa0586530 MtrunA17_Chr7g0241781 26.509 464 273 20 7 465 7 407 2.35e-34 134
Msa0586530 MtrunA17_Chr7g0218811 24.846 487 300 18 9 484 15 446 2.67e-34 134
Msa0586530 MtrunA17_Chr5g0426401 33.091 275 163 7 216 488 56 311 5.56e-34 130
Msa0586530 MtrunA17_Chr5g0401721 27.146 501 299 18 17 492 16 475 8.65e-34 133
Msa0586530 MtrunA17_Chr3g0118751 25.400 500 303 14 4 488 1 445 2.00e-33 131
Msa0586530 MtrunA17_Chr3g0118721 30.769 273 169 6 221 491 39 293 7.70e-33 126
Msa0586530 MtrunA17_Chr7g0241801 26.316 475 266 20 5 467 4 406 8.93e-33 129
Msa0586530 MtrunA17_Chr8g0367221 26.316 475 294 15 8 465 1287 1722 1.15e-32 132
Msa0586530 MtrunA17_Chr8g0367221 27.804 428 256 17 8 415 11 405 1.85e-31 129
Msa0586530 MtrunA17_Chr8g0367221 26.964 471 296 15 8 465 797 1232 5.24e-31 127
Msa0586530 MtrunA17_Chr3g0079711 36.082 194 102 4 304 485 3 186 7.19e-31 118
Msa0586530 MtrunA17_Chr5g0448551 27.181 493 250 23 6 464 6 423 1.48e-30 123
Msa0586530 MtrunA17_Chr7g0232351 27.451 408 237 17 8 390 5 378 1.74e-30 122
Msa0586530 MtrunA17_Chr4g0072771 37.788 217 114 6 269 485 268 463 3.52e-30 122
Msa0586530 MtrunA17_Chr5g0393591 24.696 494 286 16 9 489 17 437 6.64e-30 122
Msa0586530 MtrunA17_Chr8g0336251 27.215 474 285 15 8 461 6 439 9.67e-30 121
Msa0586530 MtrunA17_Chr8g0336321 27.215 474 285 15 8 461 6 439 1.04e-29 121
Msa0586530 MtrunA17_Chr1g0196851 27.731 476 282 18 1 461 41 469 2.67e-29 120
Msa0586530 MtrunA17_Chr6g0464091 29.356 419 232 18 5 398 14 393 2.71e-29 120
Msa0586530 MtrunA17_Chr8g0336261 42.857 147 67 3 300 446 1 130 5.48e-29 111
Msa0586530 MtrunA17_Chr6g0466831 28.506 435 245 20 8 420 17 407 8.14e-29 119
Msa0586530 MtrunA17_Chr4g0029151 27.766 479 269 20 4 461 15 437 1.17e-28 118
Msa0586530 MtrunA17_Chr2g0278721 27.673 477 287 21 8 464 516 954 8.45e-28 117
Msa0586530 MtrunA17_Chr2g0278721 26.013 469 298 19 8 465 14 444 2.07e-26 113
Msa0586530 MtrunA17_Chr4g0042891 26.916 509 311 21 5 494 3 469 1.67e-27 115
Msa0586530 MtrunA17_Chr6g0466841 27.586 435 249 20 8 420 17 407 1.74e-27 115
Msa0586530 MtrunA17_Chr4g0069611 26.737 475 282 22 8 465 14 439 2.44e-27 114
Msa0586530 MtrunA17_Chr4g0042931 25.545 505 321 19 5 494 3 467 3.74e-27 114
Msa0586530 MtrunA17_Chr7g0249961 32.093 215 127 6 276 490 67 262 4.91e-27 110
Msa0586530 MtrunA17_Chr4g0029131 27.292 469 284 19 4 461 7 429 1.75e-26 113
Msa0586530 MtrunA17_Chr2g0283041 25.439 456 286 16 8 451 6 419 3.60e-26 110
Msa0586530 MtrunA17_Chr7g0243921 36.264 182 107 4 7 188 38 210 4.12e-26 106
Msa0586530 MtrunA17_Chr2g0278741 27.463 477 281 21 8 465 96 526 8.09e-26 110
Msa0586530 MtrunA17_Chr7g0243731 56.338 71 31 0 348 418 6 76 1.19e-25 100
Msa0586530 MtrunA17_Chr2g0319761 25.941 478 293 17 1 462 1 433 1.71e-25 108
Msa0586530 MtrunA17_Chr8g0337381 42.424 132 63 4 350 481 1 119 1.72e-25 101
Msa0586530 MtrunA17_Chr2g0319801 28.194 454 277 17 8 451 7 421 1.86e-24 105
Msa0586530 MtrunA17_Chr6g0482061 32.955 264 151 9 219 475 223 467 3.02e-24 105
Msa0586530 MtrunA17_Chr6g0454231 28.676 272 136 6 220 490 7 221 2.41e-23 102
Msa0586530 MtrunA17_Chr2g0319731 26.403 481 277 19 8 462 24 453 1.44e-22 100
Msa0586530 MtrunA17_Chr3g0092031 36.047 172 91 6 280 448 6 161 2.52e-22 94.7
Msa0586530 MtrunA17_Chr5g0431431 28.571 231 129 4 221 450 156 351 5.67e-21 94.4
Msa0586530 MtrunA17_Chr1g0207881 37.063 143 76 5 349 489 256 386 1.26e-20 94.0
Msa0586530 MtrunA17_Chr7g0272701 34.266 143 93 1 85 227 11 152 2.15e-20 87.8
Msa0586530 MtrunA17_Chr2g0302851 27.251 411 238 14 8 398 15 384 3.18e-20 93.2
Msa0586530 MtrunA17_Chr5g0427571 31.429 245 152 6 221 463 45 275 5.06e-20 90.5
Msa0586530 MtrunA17_Chr2g0319791 24.722 449 303 14 6 451 5 421 3.15e-19 90.1
Msa0586530 MtrunA17_Chr2g0319751 26.078 464 290 20 1 451 475 898 7.82e-19 90.1
Msa0586530 MtrunA17_Chr2g0319751 25.435 460 269 21 8 456 7 403 6.11e-17 84.3
Msa0586530 MtrunA17_Chr4g0039881 38.514 148 73 6 275 415 240 376 2.77e-18 87.4
Msa0586530 MtrunA17_Chr7g0243721 41.176 119 66 3 207 323 19 135 6.46e-18 80.5
Msa0586530 MtrunA17_Chr2g0321331 28.372 215 124 6 281 495 87 271 4.68e-16 78.6
Msa0586530 MtrunA17_Chr7g0265071 58.333 60 24 1 431 489 1 60 1.30e-13 65.9
Msa0586530 MtrunA17_Chr7g0231651 31.088 193 114 6 8 192 13 194 2.41e-13 69.3
Msa0586530 MtrunA17_Chr4g0029161 25.160 469 266 20 4 461 7 401 4.21e-13 71.2
Msa0586530 MtrunA17_Chr6g0453981 28.755 233 152 8 129 351 1 229 4.77e-13 68.9
Msa0586530 MtrunA17_Chr6g0454391 39.241 79 34 1 365 443 11 75 5.47e-13 65.9
Msa0586530 MtrunA17_Chr4g0066231 34.615 78 50 1 389 466 1 77 6.59e-12 61.2
Msa0586530 MtrunA17_Chr5g0426411 32.000 150 87 3 7 150 10 150 5.03e-11 61.6
Msa0586530 MtrunA17_Chr6g0453941 31.544 149 91 4 177 324 119 257 7.30e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0586530 AT2G36770.1 53.564 491 219 6 6 493 11 495 0.0 524
Msa0586530 AT2G36800.1 53.360 491 222 4 2 490 5 490 0.0 523
Msa0586530 AT2G36760.1 53.099 484 223 3 6 489 11 490 0.0 523
Msa0586530 AT2G36780.1 53.388 487 219 5 6 490 11 491 0.0 521
Msa0586530 AT2G36750.1 52.156 487 228 3 6 492 7 488 0.0 519
Msa0586530 AT2G36790.1 54.433 485 213 5 8 490 12 490 1.06e-177 508
Msa0586530 AT3G53160.1 48.992 496 234 7 1 489 1 484 1.29e-169 488
Msa0586530 AT3G53150.1 48.889 495 238 7 7 489 20 511 4.45e-164 474
Msa0586530 AT4G34131.1 39.879 494 268 14 5 487 4 479 3.32e-114 346
Msa0586530 AT4G34138.1 41.683 499 252 17 7 491 9 482 1.42e-113 344
Msa0586530 AT2G15480.2 38.153 498 276 11 7 487 8 490 3.75e-113 343
Msa0586530 AT2G15480.1 38.571 490 275 11 7 487 8 480 5.87e-112 340
Msa0586530 AT2G15490.3 40.000 490 268 12 7 487 5 477 2.56e-111 338
Msa0586530 AT2G15490.1 40.162 493 266 14 7 487 5 480 5.88e-110 335
Msa0586530 AT4G34135.1 38.571 490 275 12 7 487 9 481 2.78e-97 302
Msa0586530 AT2G16890.2 34.137 498 280 18 9 492 9 472 1.32e-76 248
Msa0586530 AT5G14860.1 35.236 508 268 19 9 491 8 479 1.53e-75 246
Msa0586530 AT2G16890.3 34.928 418 237 14 9 415 9 402 5.29e-69 227
Msa0586530 AT1G73880.1 32.317 492 291 15 7 490 12 469 8.05e-69 228
Msa0586530 AT1G10400.1 31.474 502 279 20 7 487 5 462 2.29e-65 219
Msa0586530 AT5G12890.1 29.615 520 306 17 1 492 1 488 2.08e-58 201
Msa0586530 AT5G03490.1 31.365 491 284 17 9 490 19 465 5.78e-58 199
Msa0586530 AT1G22360.1 30.800 500 299 17 7 488 8 478 2.03e-55 192
Msa0586530 AT1G51210.1 32.203 413 243 12 7 415 18 397 5.77e-55 190
Msa0586530 AT1G22380.1 32.239 518 278 19 7 492 11 487 1.04e-54 191
Msa0586530 AT4G34135.2 34.940 332 200 7 7 330 9 332 3.80e-54 185
Msa0586530 AT1G06000.1 30.143 491 262 18 3 480 4 426 1.47e-53 187
Msa0586530 AT2G30150.2 29.058 499 281 17 9 490 13 455 4.63e-53 186
Msa0586530 AT5G05860.1 28.893 488 293 13 8 488 8 448 1.38e-52 184
Msa0586530 AT1G78270.1 30.444 496 306 14 7 488 11 481 2.47e-52 184
Msa0586530 AT2G30150.1 28.947 494 278 17 14 490 2 439 6.06e-52 182
Msa0586530 AT1G22400.1 31.791 497 281 16 7 479 11 473 7.00e-52 183
Msa0586530 AT5G05870.1 27.935 494 310 13 11 497 10 464 2.89e-51 181
Msa0586530 AT3G11340.1 28.398 493 304 12 1 490 1 447 6.84e-51 180
Msa0586530 AT1G22360.2 29.800 500 292 17 7 488 8 466 7.54e-51 180
Msa0586530 AT1G07250.1 31.880 367 209 10 135 489 137 474 1.82e-50 179
Msa0586530 AT1G22340.1 28.600 500 311 12 7 488 11 482 1.96e-48 174
Msa0586530 AT1G22370.2 30.261 499 298 19 7 488 11 476 8.40e-48 172
Msa0586530 AT2G29740.1 32.500 360 215 7 133 487 138 474 2.85e-47 171
Msa0586530 AT2G31750.1 29.495 495 293 16 7 489 6 456 4.61e-47 170
Msa0586530 AT3G21760.1 26.744 516 310 17 7 489 2 482 6.32e-47 170
Msa0586530 AT2G31750.2 29.697 495 292 17 7 489 6 456 9.39e-47 169
Msa0586530 AT3G16520.3 34.783 276 147 10 218 486 209 458 1.24e-46 169
Msa0586530 AT5G59580.1 28.081 495 300 14 1 487 1 447 2.10e-46 168
Msa0586530 AT3G46670.1 29.039 489 280 17 11 485 11 446 2.77e-46 167
Msa0586530 AT5G05880.1 27.823 496 288 16 8 487 7 448 3.62e-46 167
Msa0586530 AT3G21800.1 27.395 522 289 21 8 489 6 477 7.65e-46 167
Msa0586530 AT5G59590.1 28.221 489 292 16 9 487 10 449 1.09e-45 166
Msa0586530 AT3G50740.1 29.457 516 270 21 7 481 5 467 2.81e-45 166
Msa0586530 AT2G30140.1 28.144 501 276 20 9 487 13 451 3.61e-45 164
Msa0586530 AT2G30140.2 29.184 490 284 19 9 487 13 450 3.76e-45 164
Msa0586530 AT4G01070.1 28.310 491 299 13 9 482 8 462 3.81e-45 165
Msa0586530 AT4G15550.1 28.313 498 307 15 6 488 12 474 4.23e-45 165
Msa0586530 AT1G05560.1 28.921 491 293 18 9 487 5 451 1.00e-44 164
Msa0586530 AT3G16520.2 35.249 261 139 9 218 471 209 446 1.09e-44 163
Msa0586530 AT3G16520.1 35.547 256 135 9 218 466 209 441 1.32e-44 163
Msa0586530 AT1G05560.2 28.921 491 293 18 9 487 55 501 1.54e-44 164
Msa0586530 AT4G14090.1 29.243 489 288 15 9 486 13 454 2.34e-44 162
Msa0586530 AT2G29730.1 26.139 505 310 17 8 491 4 466 2.95e-44 162
Msa0586530 AT3G46650.1 27.621 496 285 14 4 490 5 435 5.11e-44 161
Msa0586530 AT2G31790.1 28.916 498 284 19 7 484 6 453 8.93e-44 160
Msa0586530 AT2G43820.1 27.530 494 289 19 9 487 7 446 9.53e-44 160
Msa0586530 AT1G01420.1 27.778 486 295 15 9 476 8 455 1.69e-43 160
Msa0586530 AT1G01420.2 27.778 486 295 15 9 476 11 458 1.73e-43 160
Msa0586530 AT1G24100.1 30.134 521 271 22 1 489 1 460 1.90e-43 160
Msa0586530 AT4G15480.1 27.984 511 304 17 8 497 18 485 2.86e-43 160
Msa0586530 AT5G26310.1 32.646 291 151 8 220 489 203 469 2.17e-42 157
Msa0586530 AT4G15280.1 27.362 508 310 19 7 489 2 475 4.01e-42 157
Msa0586530 AT2G29710.1 24.600 500 320 14 11 492 7 467 5.03e-42 156
Msa0586530 AT4G15280.2 27.362 508 310 19 7 489 34 507 5.74e-42 157
Msa0586530 AT1G07240.1 29.589 365 226 9 133 488 134 476 1.61e-41 155
Msa0586530 AT5G66690.1 25.440 511 317 15 7 494 5 474 1.76e-41 155
Msa0586530 AT4G36770.1 27.016 496 279 15 7 470 2 446 2.23e-41 154
Msa0586530 AT5G65550.1 27.706 462 283 14 1 448 1 425 2.55e-41 154
Msa0586530 AT4G15260.1 35.106 282 152 9 220 489 94 356 3.62e-41 151
Msa0586530 AT3G21780.1 26.488 521 293 19 7 489 2 470 3.64e-41 154
Msa0586530 AT5G05900.1 27.515 487 300 13 8 487 7 447 3.84e-41 153
Msa0586530 AT3G46660.1 27.959 490 290 19 11 487 16 455 9.19e-41 152
Msa0586530 AT3G46680.1 26.176 489 301 14 1 478 1 440 9.34e-41 152
Msa0586530 AT3G21790.1 25.725 517 312 18 7 489 2 480 1.00e-40 153
Msa0586530 AT1G01390.2 27.804 428 259 12 9 415 25 423 1.05e-40 153
Msa0586530 AT1G01390.1 27.804 428 259 12 9 415 8 406 1.07e-40 153
Msa0586530 AT3G55700.1 27.183 504 287 20 11 492 10 455 1.07e-40 152
Msa0586530 AT2G18570.1 26.210 496 301 17 9 480 5 459 1.53e-40 152
Msa0586530 AT2G23250.1 28.423 482 280 16 18 487 7 435 1.74e-40 151
Msa0586530 AT1G05530.1 27.143 490 308 16 9 488 5 455 4.15e-40 150
Msa0586530 AT3G02100.1 26.884 491 297 17 9 484 13 456 6.32e-40 150
Msa0586530 AT1G05675.1 26.069 491 301 14 9 484 6 449 3.04e-39 148
Msa0586530 AT2G29750.1 29.477 363 223 10 133 488 138 474 4.80e-39 148
Msa0586530 AT1G07260.1 33.688 282 166 7 210 488 209 472 6.49e-39 148
Msa0586530 AT3G46690.1 26.327 490 287 16 7 478 7 440 3.71e-38 145
Msa0586530 AT2G36970.1 25.984 508 304 17 7 487 8 470 4.92e-38 145
Msa0586530 AT5G49690.1 26.834 477 275 18 8 462 9 433 5.86e-38 145
Msa0586530 AT2G23260.1 28.513 491 292 16 9 487 10 453 8.97e-38 144
Msa0586530 AT1G05680.1 26.735 490 301 16 9 485 6 450 1.09e-37 144
Msa0586530 AT4G15490.1 27.505 509 303 22 4 488 1 467 4.10e-37 143
Msa0586530 AT2G28080.1 29.142 501 280 20 14 489 23 473 4.72e-37 142
Msa0586530 AT5G05890.1 27.551 490 301 15 8 487 7 452 5.67e-37 142
Msa0586530 AT3G21560.1 27.984 511 294 20 4 487 9 472 5.68e-37 142
Msa0586530 AT2G43840.2 26.694 487 302 19 9 487 7 446 1.00e-36 141
Msa0586530 AT3G46700.1 24.895 478 300 12 7 476 7 433 1.16e-36 141
Msa0586530 AT2G43840.1 26.694 487 302 19 9 487 7 446 1.70e-36 140
Msa0586530 AT2G16890.4 31.975 319 188 12 9 316 9 309 5.18e-36 136
Msa0586530 AT2G16890.1 31.975 319 188 12 9 316 9 309 5.18e-36 136
Msa0586530 AT3G55710.1 28.266 421 253 15 11 415 10 397 5.41e-36 139
Msa0586530 AT2G26480.1 26.829 492 291 17 11 488 10 446 7.64e-36 139
Msa0586530 AT5G38010.1 27.397 511 276 19 7 487 8 453 8.15e-36 139
Msa0586530 AT2G18560.1 30.216 278 156 7 218 480 115 369 1.76e-35 136
Msa0586530 AT3G21750.1 25.147 509 313 17 7 488 2 469 7.94e-35 136
Msa0586530 AT4G15500.1 25.097 514 314 21 1 492 3 467 9.83e-35 136
Msa0586530 AT1G64910.1 26.608 451 287 13 8 458 5 411 1.37e-34 135
Msa0586530 AT3G46720.1 27.178 482 284 16 7 478 7 431 2.99e-34 134
Msa0586530 AT5G17050.1 25.296 506 306 17 3 490 8 459 1.20e-33 132
Msa0586530 AT1G22370.1 33.088 272 160 8 220 488 54 306 2.08e-33 129
Msa0586530 AT5G38040.1 26.434 488 286 18 17 487 18 449 2.26e-33 132
Msa0586530 AT1G30530.1 25.904 498 292 19 10 490 16 453 4.05e-33 131
Msa0586530 AT5G17040.2 31.481 270 156 7 221 490 100 340 6.27e-33 128
Msa0586530 AT5G17030.1 30.258 271 160 6 220 490 217 458 7.81e-33 130
Msa0586530 AT5G17040.1 31.481 270 156 7 221 490 202 442 1.19e-32 129
Msa0586530 AT4G27570.1 26.923 416 263 12 7 416 5 385 3.82e-31 125
Msa0586530 AT4G27560.1 26.506 415 266 11 7 416 5 385 3.01e-30 123
Msa0586530 AT3G22250.1 25.743 505 263 24 3 463 4 440 1.01e-29 121
Msa0586530 AT2G22590.1 25.636 472 296 13 7 462 13 445 1.36e-29 121
Msa0586530 AT3G29630.1 25.652 460 295 13 7 461 4 421 5.85e-29 119
Msa0586530 AT3G29630.2 25.926 459 269 16 7 461 4 395 2.75e-28 117
Msa0586530 AT5G53990.1 26.338 467 268 17 8 458 5 411 1.68e-27 115
Msa0586530 AT1G64920.1 26.258 457 287 15 7 458 4 415 1.93e-26 112
Msa0586530 AT1G50580.1 25.478 471 280 16 7 461 4 419 5.34e-26 110
Msa0586530 AT5G54010.1 24.619 459 294 14 7 458 4 417 8.03e-26 110
Msa0586530 AT4G09500.2 25.630 476 283 15 4 465 1 419 1.01e-25 110
Msa0586530 AT4G09500.1 26.134 463 272 17 4 465 1 394 2.71e-25 108
Msa0586530 AT2G15490.2 34.211 190 113 6 7 188 5 190 1.12e-23 100
Msa0586530 AT2G22930.1 24.892 462 302 12 4 464 1 418 2.71e-23 102
Msa0586530 AT5G37950.1 27.891 294 179 9 104 390 76 343 1.60e-22 99.4
Msa0586530 AT5G37950.2 27.431 288 182 7 104 390 76 337 3.60e-22 98.2
Msa0586530 AT5G54060.1 24.554 505 308 18 8 490 12 465 1.32e-21 97.8

Find 91 sgRNAs with CRISPR-Local

Find 248 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTAAATGCCATTAATATTA+TGG 0.152964 4_2:+7742882 Msa0586530:CDS
CATGATTTCCATAATATTAA+TGG 0.176093 4_2:-7742890 None:intergenic
TGGTAGAGGCCTAGTAATTA+AGG 0.254407 4_2:+7743443 Msa0586530:CDS
CTAGCTATGTGGATTGTATA+TGG 0.276076 4_2:-7742793 None:intergenic
TTGCTGCAGTAAGTTGCTTC+TGG 0.276341 4_2:+7742842 Msa0586530:CDS
AACTTTCCATGTAAAGAGTT+TGG 0.286014 4_2:+7742616 Msa0586530:CDS
GCTTGCTGAGATGGCTAAAA+AGG 0.306382 4_2:+7743788 Msa0586530:CDS
ACTGCAGCAAAAGAAATTCT+TGG 0.311271 4_2:-7742829 None:intergenic
AAGAGGAATAGAAGTGTTAA+TGG 0.319780 4_2:+7743722 Msa0586530:CDS
ACTTAGTAACATTGATGAAT+TGG 0.326831 4_2:+7743161 Msa0586530:CDS
AGATTAGAAATGACAAAGTT+TGG 0.331276 4_2:+7743121 Msa0586530:CDS
ATAATACATGTTTCTTCATA+TGG 0.331814 4_2:-7743895 None:intergenic
AACAACACAAAGTGTAGTTT+TGG 0.332964 4_2:-7742421 None:intergenic
TCTCTAATAACCCAAATAAA+AGG 0.343882 4_2:-7743357 None:intergenic
TCTTCCTCACCCCATTGAAT+AGG 0.368762 4_2:-7743663 None:intergenic
GGATATACTTGAAGCTGAAA+TGG 0.374963 4_2:+7743032 Msa0586530:CDS
TCAAGATTCTCACACCCTTC+TGG 0.375312 4_2:-7742643 None:intergenic
ATCCTCATTAAATTGTTTCA+AGG 0.376454 4_2:-7743013 None:intergenic
TTGTGGTTGGAATTCTACTA+TGG 0.377974 4_2:+7743524 Msa0586530:CDS
GTAGCACGTCATGTTGAATC+TGG 0.379621 4_2:+7742568 Msa0586530:CDS
GAAGCTGAAATGGGTAGTTA+TGG 0.395187 4_2:+7743042 Msa0586530:CDS
CTTTGTGTTGTTTCCAATGA+TGG 0.396641 4_2:+7742432 Msa0586530:CDS
AATGACAAAGTTTGGTGTAT+AGG 0.398133 4_2:+7743129 Msa0586530:CDS
TTCAAGTCCCTTACATATGT+TGG 0.399868 4_2:-7743096 None:intergenic
ATTGAGGAGAGTGGATTTGA+GGG 0.399917 4_2:+7743411 Msa0586530:CDS
TAACATTGATGAATTGGATA+AGG 0.404858 4_2:+7743167 Msa0586530:CDS
ACCCTAGTCCTGTTTGTGCT+AGG 0.406283 4_2:-7742972 None:intergenic
GAGAATCTTGACATGCTGCC+TGG 0.426628 4_2:+7742655 Msa0586530:CDS
ACTAGGGTCAACAAAGGTTA+TGG 0.429662 4_2:+7742987 Msa0586530:CDS
GATGGACACTGCAAAACTAT+TGG 0.435532 4_2:+7742477 Msa0586530:CDS
AATGTAAAGAAAGAAGAAAA+AGG 0.439210 4_2:+7743757 Msa0586530:CDS
AAGCTGAAATGGGTAGTTAT+GGG 0.442213 4_2:+7743043 Msa0586530:CDS
CATTAATATTATGGAAATCA+TGG 0.448368 4_2:+7742891 Msa0586530:CDS
CCCTAGTCCTGTTTGTGCTA+GGG 0.460150 4_2:-7742971 None:intergenic
AGTTAGAGCCAACATATGTA+AGG 0.466189 4_2:+7743088 Msa0586530:CDS
AGGCCTAGTAATTAAGGGTT+GGG 0.471377 4_2:+7743449 Msa0586530:CDS
TGATACATTGAAGAAGTTTG+AGG 0.472014 4_2:-7742689 None:intergenic
TCAGAGATAATACAAGTTGC+TGG 0.475164 4_2:-7742760 None:intergenic
ATTGAAGAAGTTTGAGGCTA+GGG 0.477454 4_2:-7742683 None:intergenic
GGATTTGAGGGAAGAATCAA+TGG 0.478326 4_2:+7743423 Msa0586530:CDS
TCAATGTTACTAAGTGATAC+AGG 0.479291 4_2:-7743153 None:intergenic
GATTGAGGAGAGTGGATTTG+AGG 0.479965 4_2:+7743410 Msa0586530:CDS
TATTGAACTTTCTAGCTATG+TGG 0.480031 4_2:-7742804 None:intergenic
GGGTGAAGAGTCCTATTCAA+TGG 0.480613 4_2:+7743652 Msa0586530:CDS
GTTGTGCAAATATTGAAAGT+TGG 0.483816 4_2:+7743618 Msa0586530:CDS
GATATACTTGAAGCTGAAAT+GGG 0.488641 4_2:+7743033 Msa0586530:CDS
GGGCCCAACCCTTAATTACT+AGG 0.488851 4_2:-7743452 None:intergenic
GGTGAAGAGTCCTATTCAAT+GGG 0.490401 4_2:+7743653 Msa0586530:CDS
GAAATGACCCTAGCACAAAC+AGG 0.490631 4_2:+7742964 Msa0586530:CDS
GAAGTGGCTAAATTCTCATA+AGG 0.494972 4_2:+7743239 Msa0586530:CDS
GGTAGAGGCCTAGTAATTAA+GGG 0.495542 4_2:+7743444 Msa0586530:CDS
GGTAATCCAAACTCTTTACA+TGG 0.498013 4_2:-7742622 None:intergenic
GATTAGAGAGCTTGCTGAGA+TGG 0.498071 4_2:+7743779 Msa0586530:CDS
CATTGAAGAAGTTTGAGGCT+AGG 0.499517 4_2:-7742684 None:intergenic
AGTAGAATTCCAACCACAAT+GGG 0.504302 4_2:-7743520 None:intergenic
ATGTGGCCTTGTGCCATCAT+TGG 0.505701 4_2:-7742445 None:intergenic
TTGTCACATCCTGCAATTGG+AGG 0.505886 4_2:+7743489 Msa0586530:CDS
AGCCTTGAAACAATTTAATG+AGG 0.509352 4_2:+7743011 Msa0586530:CDS
AAGAAAGAAGATGTTGAAAG+AGG 0.515057 4_2:+7743705 Msa0586530:CDS
CTGGTGTACCAATGGTTACA+TGG 0.522996 4_2:+7743559 Msa0586530:CDS
TTTGAGGCTAGGGCAAGTCC+AGG 0.535087 4_2:-7742673 None:intergenic
TTTATTTGGGTTATTAGAGA+GGG 0.535220 4_2:+7743360 Msa0586530:CDS
TTAGATTACATAAACTTCCA+AGG 0.537093 4_2:-7743284 None:intergenic
CCACCACAGTTGATAGAGCT+AGG 0.542078 4_2:+7743309 Msa0586530:CDS
AGTGTTATATATGCAAGCCT+TGG 0.542503 4_2:+7743267 Msa0586530:CDS
ACCCTAGCACAAACAGGACT+AGG 0.553952 4_2:+7742970 Msa0586530:CDS
GAGGCCTAGTAATTAAGGGT+TGG 0.554653 4_2:+7743448 Msa0586530:CDS
GAGGGAAGAATCAATGGTAG+AGG 0.568339 4_2:+7743429 Msa0586530:CDS
TGTCCATCATGGGGATCATG+TGG 0.573417 4_2:-7742462 None:intergenic
AAAGAGTTTGGATTACCAGA+AGG 0.576750 4_2:+7742628 Msa0586530:CDS
AAGAGTTTGGATTACCAGAA+GGG 0.580939 4_2:+7742629 Msa0586530:CDS
AAAAGTGGCCATGTAACCAT+TGG 0.583630 4_2:-7743567 None:intergenic
AGGCCACATGATCCCCATGA+TGG 0.587737 4_2:+7742459 Msa0586530:CDS
GTGACAAAATCAATAACTGA+GGG 0.594967 4_2:-7743473 None:intergenic
GAGTCCTATTCAATGGGGTG+AGG 0.601106 4_2:+7743659 Msa0586530:CDS
ACTATGGAAGCAATATGTGC+TGG 0.603877 4_2:+7743540 Msa0586530:CDS
CCCTAGCACAAACAGGACTA+GGG 0.604808 4_2:+7742971 Msa0586530:CDS
TAGTAGAATTCCAACCACAA+TGG 0.612775 4_2:-7743521 None:intergenic
GTTAGAGCCAACATATGTAA+GGG 0.620691 4_2:+7743089 Msa0586530:CDS
CACCACAGTTGATAGAGCTA+GGG 0.621125 4_2:+7743310 Msa0586530:CDS
CCTAGCTCTATCAACTGTGG+TGG 0.636929 4_2:-7743309 None:intergenic
TGTGACAAAATCAATAACTG+AGG 0.652684 4_2:-7743474 None:intergenic
ATGAATGGAAGCACTTGAAG+TGG 0.663535 4_2:+7743223 Msa0586530:CDS
AATATGTGCTGGTGTACCAA+TGG 0.675229 4_2:+7743551 Msa0586530:CDS
GAATTGGATAAGGTTCAAAG+AGG 0.679282 4_2:+7743177 Msa0586530:CDS
TTGTTTCCAATGATGGCACA+AGG 0.685173 4_2:+7742439 Msa0586530:CDS
AACCCTAGCTCTATCAACTG+TGG 0.685229 4_2:-7743312 None:intergenic
GAGATAATACAAGTTGCTGG+TGG 0.692094 4_2:-7742757 None:intergenic
AACAGGACTAGGGTCAACAA+AGG 0.692624 4_2:+7742981 Msa0586530:CDS
GTGAAGAGTCCTATTCAATG+GGG 0.739095 4_2:+7743654 Msa0586530:CDS
TGACAAAATCAATAACTGAG+GGG 0.739385 4_2:-7743472 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTAAATGCCATTAATATTA+TGG + chr4_2:7742882-7742901 Msa0586530:CDS 15.0%
!! TTTAAATGCCATTAATATTA+TGG + chr4_2:7742882-7742901 Msa0586530:CDS 15.0%
!! CATGATTTCCATAATATTAA+TGG - chr4_2:7742893-7742912 None:intergenic 20.0%
!! CATTAATATTATGGAAATCA+TGG + chr4_2:7742891-7742910 Msa0586530:CDS 20.0%
!!! AACAAAAAGACCTTTTATTT+GGG + chr4_2:7743347-7743366 Msa0586530:CDS 20.0%
!! AATGTAAAGAAAGAAGAAAA+AGG + chr4_2:7743757-7743776 Msa0586530:CDS 20.0%
!!! TTTTTATCTTCATGATATCT+TGG - chr4_2:7743860-7743879 None:intergenic 20.0%
!! CATGATTTCCATAATATTAA+TGG - chr4_2:7742893-7742912 None:intergenic 20.0%
!! CATTAATATTATGGAAATCA+TGG + chr4_2:7742891-7742910 Msa0586530:CDS 20.0%
!!! AACAAAAAGACCTTTTATTT+GGG + chr4_2:7743347-7743366 Msa0586530:CDS 20.0%
!! AATGTAAAGAAAGAAGAAAA+AGG + chr4_2:7743757-7743776 Msa0586530:CDS 20.0%
!!! TTTTTATCTTCATGATATCT+TGG - chr4_2:7743860-7743879 None:intergenic 20.0%
!! ATATCTTTTCAACTTCTTGT+TGG - chr4_2:7742723-7742742 None:intergenic 25.0%
! ATCCTCATTAAATTGTTTCA+AGG - chr4_2:7743016-7743035 None:intergenic 25.0%
!! GATAATCACAAATTCTTTTG+AGG + chr4_2:7743065-7743084 Msa0586530:CDS 25.0%
! AGATTAGAAATGACAAAGTT+TGG + chr4_2:7743121-7743140 Msa0586530:CDS 25.0%
! ACTTAGTAACATTGATGAAT+TGG + chr4_2:7743161-7743180 Msa0586530:CDS 25.0%
! TAACATTGATGAATTGGATA+AGG + chr4_2:7743167-7743186 Msa0586530:CDS 25.0%
!!! ACAAAGTTTTAGTTGATGAA+TGG + chr4_2:7743208-7743227 Msa0586530:CDS 25.0%
! TTAGATTACATAAACTTCCA+AGG - chr4_2:7743287-7743306 None:intergenic 25.0%
!! CAACAAAAAGACCTTTTATT+TGG + chr4_2:7743346-7743365 Msa0586530:CDS 25.0%
! TCTCTAATAACCCAAATAAA+AGG - chr4_2:7743360-7743379 None:intergenic 25.0%
!!! TTTTATTTGGGTTATTAGAG+AGG + chr4_2:7743359-7743378 Msa0586530:CDS 25.0%
!! TTTATTTGGGTTATTAGAGA+GGG + chr4_2:7743360-7743379 Msa0586530:CDS 25.0%
! AGTTAGAAGAGTTGAAAAAA+TGG + chr4_2:7743388-7743407 Msa0586530:CDS 25.0%
! AAAAATTGATCAGCAAAAAG+TGG - chr4_2:7743585-7743604 None:intergenic 25.0%
!!! TTGAAAGTTGGTGTAAAAAT+TGG + chr4_2:7743630-7743649 Msa0586530:CDS 25.0%
!!! TGAAAGTTGGTGTAAAAATT+GGG + chr4_2:7743631-7743650 Msa0586530:CDS 25.0%
!! ATATCTTTTCAACTTCTTGT+TGG - chr4_2:7742723-7742742 None:intergenic 25.0%
! ATCCTCATTAAATTGTTTCA+AGG - chr4_2:7743016-7743035 None:intergenic 25.0%
!! GATAATCACAAATTCTTTTG+AGG + chr4_2:7743065-7743084 Msa0586530:CDS 25.0%
! AGATTAGAAATGACAAAGTT+TGG + chr4_2:7743121-7743140 Msa0586530:CDS 25.0%
! ACTTAGTAACATTGATGAAT+TGG + chr4_2:7743161-7743180 Msa0586530:CDS 25.0%
! TAACATTGATGAATTGGATA+AGG + chr4_2:7743167-7743186 Msa0586530:CDS 25.0%
!!! ACAAAGTTTTAGTTGATGAA+TGG + chr4_2:7743208-7743227 Msa0586530:CDS 25.0%
! TTAGATTACATAAACTTCCA+AGG - chr4_2:7743287-7743306 None:intergenic 25.0%
!! CAACAAAAAGACCTTTTATT+TGG + chr4_2:7743346-7743365 Msa0586530:CDS 25.0%
! TCTCTAATAACCCAAATAAA+AGG - chr4_2:7743360-7743379 None:intergenic 25.0%
!!! TTTTATTTGGGTTATTAGAG+AGG + chr4_2:7743359-7743378 Msa0586530:CDS 25.0%
!! TTTATTTGGGTTATTAGAGA+GGG + chr4_2:7743360-7743379 Msa0586530:CDS 25.0%
! AGTTAGAAGAGTTGAAAAAA+TGG + chr4_2:7743388-7743407 Msa0586530:CDS 25.0%
! AAAAATTGATCAGCAAAAAG+TGG - chr4_2:7743585-7743604 None:intergenic 25.0%
!!! TTGAAAGTTGGTGTAAAAAT+TGG + chr4_2:7743630-7743649 Msa0586530:CDS 25.0%
!!! TGAAAGTTGGTGTAAAAATT+GGG + chr4_2:7743631-7743650 Msa0586530:CDS 25.0%
!!! AAAGTGTAGTTTTGGATCTA+GGG - chr4_2:7742416-7742435 None:intergenic 30.0%
! AACAACACAAAGTGTAGTTT+TGG - chr4_2:7742424-7742443 None:intergenic 30.0%
!!! TGAACCTAGATGCATTTTTT+GGG - chr4_2:7742540-7742559 None:intergenic 30.0%
AACTTTCCATGTAAAGAGTT+TGG + chr4_2:7742616-7742635 Msa0586530:CDS 30.0%
TGATACATTGAAGAAGTTTG+AGG - chr4_2:7742692-7742711 None:intergenic 30.0%
!! TATTGAACTTTCTAGCTATG+TGG - chr4_2:7742807-7742826 None:intergenic 30.0%
AGCCTTGAAACAATTTAATG+AGG + chr4_2:7743011-7743030 Msa0586530:CDS 30.0%
GATATACTTGAAGCTGAAAT+GGG + chr4_2:7743033-7743052 Msa0586530:CDS 30.0%
!! AATGACAAAGTTTGGTGTAT+AGG + chr4_2:7743129-7743148 Msa0586530:CDS 30.0%
TCAATGTTACTAAGTGATAC+AGG - chr4_2:7743156-7743175 None:intergenic 30.0%
!! AGAGTTGAAAAAATGGATTG+AGG + chr4_2:7743395-7743414 Msa0586530:CDS 30.0%
TGACAAAATCAATAACTGAG+GGG - chr4_2:7743475-7743494 None:intergenic 30.0%
GTGACAAAATCAATAACTGA+GGG - chr4_2:7743476-7743495 None:intergenic 30.0%
TGTGACAAAATCAATAACTG+AGG - chr4_2:7743477-7743496 None:intergenic 30.0%
GTTGTGCAAATATTGAAAGT+TGG + chr4_2:7743618-7743637 Msa0586530:CDS 30.0%
!! GAAAGTTGGTGTAAAAATTG+GGG + chr4_2:7743632-7743651 Msa0586530:CDS 30.0%
AAGAAAGAAGATGTTGAAAG+AGG + chr4_2:7743705-7743724 Msa0586530:CDS 30.0%
!! AAGAGGAATAGAAGTGTTAA+TGG + chr4_2:7743722-7743741 Msa0586530:CDS 30.0%
!!! AAAGTGTAGTTTTGGATCTA+GGG - chr4_2:7742416-7742435 None:intergenic 30.0%
! AACAACACAAAGTGTAGTTT+TGG - chr4_2:7742424-7742443 None:intergenic 30.0%
!!! TGAACCTAGATGCATTTTTT+GGG - chr4_2:7742540-7742559 None:intergenic 30.0%
AACTTTCCATGTAAAGAGTT+TGG + chr4_2:7742616-7742635 Msa0586530:CDS 30.0%
TGATACATTGAAGAAGTTTG+AGG - chr4_2:7742692-7742711 None:intergenic 30.0%
!! TATTGAACTTTCTAGCTATG+TGG - chr4_2:7742807-7742826 None:intergenic 30.0%
AGCCTTGAAACAATTTAATG+AGG + chr4_2:7743011-7743030 Msa0586530:CDS 30.0%
GATATACTTGAAGCTGAAAT+GGG + chr4_2:7743033-7743052 Msa0586530:CDS 30.0%
!! AATGACAAAGTTTGGTGTAT+AGG + chr4_2:7743129-7743148 Msa0586530:CDS 30.0%
TCAATGTTACTAAGTGATAC+AGG - chr4_2:7743156-7743175 None:intergenic 30.0%
!! AGAGTTGAAAAAATGGATTG+AGG + chr4_2:7743395-7743414 Msa0586530:CDS 30.0%
TGACAAAATCAATAACTGAG+GGG - chr4_2:7743475-7743494 None:intergenic 30.0%
GTGACAAAATCAATAACTGA+GGG - chr4_2:7743476-7743495 None:intergenic 30.0%
TGTGACAAAATCAATAACTG+AGG - chr4_2:7743477-7743496 None:intergenic 30.0%
GTTGTGCAAATATTGAAAGT+TGG + chr4_2:7743618-7743637 Msa0586530:CDS 30.0%
!! GAAAGTTGGTGTAAAAATTG+GGG + chr4_2:7743632-7743651 Msa0586530:CDS 30.0%
AAGAAAGAAGATGTTGAAAG+AGG + chr4_2:7743705-7743724 Msa0586530:CDS 30.0%
!! AAGAGGAATAGAAGTGTTAA+TGG + chr4_2:7743722-7743741 Msa0586530:CDS 30.0%
!!! CAAAGTGTAGTTTTGGATCT+AGG - chr4_2:7742417-7742436 None:intergenic 35.0%
!! CTTTGTGTTGTTTCCAATGA+TGG + chr4_2:7742432-7742451 Msa0586530:CDS 35.0%
!!! GAACCTAGATGCATTTTTTG+GGG - chr4_2:7742539-7742558 None:intergenic 35.0%
!!! GTGAACCTAGATGCATTTTT+TGG - chr4_2:7742541-7742560 None:intergenic 35.0%
GGTAATCCAAACTCTTTACA+TGG - chr4_2:7742625-7742644 None:intergenic 35.0%
AAAGAGTTTGGATTACCAGA+AGG + chr4_2:7742628-7742647 Msa0586530:CDS 35.0%
AAGAGTTTGGATTACCAGAA+GGG + chr4_2:7742629-7742648 Msa0586530:CDS 35.0%
! ATTGAAGAAGTTTGAGGCTA+GGG - chr4_2:7742686-7742705 None:intergenic 35.0%
TCAGAGATAATACAAGTTGC+TGG - chr4_2:7742763-7742782 None:intergenic 35.0%
! CTAGCTATGTGGATTGTATA+TGG - chr4_2:7742796-7742815 None:intergenic 35.0%
ACTGCAGCAAAAGAAATTCT+TGG - chr4_2:7742832-7742851 None:intergenic 35.0%
! TCAATTTTGTCAGGGATATC+AGG - chr4_2:7742946-7742965 None:intergenic 35.0%
! GGGTCATTTCAATTTTGTCA+GGG - chr4_2:7742954-7742973 None:intergenic 35.0%
! AGGGTCATTTCAATTTTGTC+AGG - chr4_2:7742955-7742974 None:intergenic 35.0%
GGATATACTTGAAGCTGAAA+TGG + chr4_2:7743032-7743051 Msa0586530:CDS 35.0%
AAGCTGAAATGGGTAGTTAT+GGG + chr4_2:7743043-7743062 Msa0586530:CDS 35.0%
AGTTAGAGCCAACATATGTA+AGG + chr4_2:7743088-7743107 Msa0586530:CDS 35.0%
GTTAGAGCCAACATATGTAA+GGG + chr4_2:7743089-7743108 Msa0586530:CDS 35.0%
TTCAAGTCCCTTACATATGT+TGG - chr4_2:7743099-7743118 None:intergenic 35.0%
GAATTGGATAAGGTTCAAAG+AGG + chr4_2:7743177-7743196 Msa0586530:CDS 35.0%
GAAGTGGCTAAATTCTCATA+AGG + chr4_2:7743239-7743258 Msa0586530:CDS 35.0%
AGTGTTATATATGCAAGCCT+TGG + chr4_2:7743267-7743286 Msa0586530:CDS 35.0%
!! AAAAAATGGATTGAGGAGAG+TGG + chr4_2:7743402-7743421 Msa0586530:CDS 35.0%
! ATTTTGTCACATCCTGCAAT+TGG + chr4_2:7743486-7743505 Msa0586530:CDS 35.0%
AGTAGAATTCCAACCACAAT+GGG - chr4_2:7743523-7743542 None:intergenic 35.0%
TAGTAGAATTCCAACCACAA+TGG - chr4_2:7743524-7743543 None:intergenic 35.0%
TTGTGGTTGGAATTCTACTA+TGG + chr4_2:7743524-7743543 Msa0586530:CDS 35.0%
GCTAAAAAGGCTGTAGAAAA+AGG + chr4_2:7743801-7743820 Msa0586530:CDS 35.0%
AAAAAGGCTGTAGAAAAAGG+TGG + chr4_2:7743804-7743823 Msa0586530:CDS 35.0%
!!! CAAAGTGTAGTTTTGGATCT+AGG - chr4_2:7742417-7742436 None:intergenic 35.0%
!! CTTTGTGTTGTTTCCAATGA+TGG + chr4_2:7742432-7742451 Msa0586530:CDS 35.0%
!!! GAACCTAGATGCATTTTTTG+GGG - chr4_2:7742539-7742558 None:intergenic 35.0%
!!! GTGAACCTAGATGCATTTTT+TGG - chr4_2:7742541-7742560 None:intergenic 35.0%
GGTAATCCAAACTCTTTACA+TGG - chr4_2:7742625-7742644 None:intergenic 35.0%
AAAGAGTTTGGATTACCAGA+AGG + chr4_2:7742628-7742647 Msa0586530:CDS 35.0%
AAGAGTTTGGATTACCAGAA+GGG + chr4_2:7742629-7742648 Msa0586530:CDS 35.0%
! ATTGAAGAAGTTTGAGGCTA+GGG - chr4_2:7742686-7742705 None:intergenic 35.0%
TCAGAGATAATACAAGTTGC+TGG - chr4_2:7742763-7742782 None:intergenic 35.0%
! CTAGCTATGTGGATTGTATA+TGG - chr4_2:7742796-7742815 None:intergenic 35.0%
ACTGCAGCAAAAGAAATTCT+TGG - chr4_2:7742832-7742851 None:intergenic 35.0%
! TCAATTTTGTCAGGGATATC+AGG - chr4_2:7742946-7742965 None:intergenic 35.0%
! GGGTCATTTCAATTTTGTCA+GGG - chr4_2:7742954-7742973 None:intergenic 35.0%
! AGGGTCATTTCAATTTTGTC+AGG - chr4_2:7742955-7742974 None:intergenic 35.0%
GGATATACTTGAAGCTGAAA+TGG + chr4_2:7743032-7743051 Msa0586530:CDS 35.0%
AAGCTGAAATGGGTAGTTAT+GGG + chr4_2:7743043-7743062 Msa0586530:CDS 35.0%
AGTTAGAGCCAACATATGTA+AGG + chr4_2:7743088-7743107 Msa0586530:CDS 35.0%
GTTAGAGCCAACATATGTAA+GGG + chr4_2:7743089-7743108 Msa0586530:CDS 35.0%
TTCAAGTCCCTTACATATGT+TGG - chr4_2:7743099-7743118 None:intergenic 35.0%
GAATTGGATAAGGTTCAAAG+AGG + chr4_2:7743177-7743196 Msa0586530:CDS 35.0%
GAAGTGGCTAAATTCTCATA+AGG + chr4_2:7743239-7743258 Msa0586530:CDS 35.0%
AGTGTTATATATGCAAGCCT+TGG + chr4_2:7743267-7743286 Msa0586530:CDS 35.0%
!! AAAAAATGGATTGAGGAGAG+TGG + chr4_2:7743402-7743421 Msa0586530:CDS 35.0%
! ATTTTGTCACATCCTGCAAT+TGG + chr4_2:7743486-7743505 Msa0586530:CDS 35.0%
AGTAGAATTCCAACCACAAT+GGG - chr4_2:7743523-7743542 None:intergenic 35.0%
TAGTAGAATTCCAACCACAA+TGG - chr4_2:7743524-7743543 None:intergenic 35.0%
TTGTGGTTGGAATTCTACTA+TGG + chr4_2:7743524-7743543 Msa0586530:CDS 35.0%
GCTAAAAAGGCTGTAGAAAA+AGG + chr4_2:7743801-7743820 Msa0586530:CDS 35.0%
AAAAAGGCTGTAGAAAAAGG+TGG + chr4_2:7743804-7743823 Msa0586530:CDS 35.0%
TTGTTTCCAATGATGGCACA+AGG + chr4_2:7742439-7742458 Msa0586530:CDS 40.0%
! AGTTTTGCAGTGTCCATCAT+GGG - chr4_2:7742475-7742494 None:intergenic 40.0%
!! TAGTTTTGCAGTGTCCATCA+TGG - chr4_2:7742476-7742495 None:intergenic 40.0%
GATGGACACTGCAAAACTAT+TGG + chr4_2:7742477-7742496 Msa0586530:CDS 40.0%
CAACCCCAAAAAATGCATCT+AGG + chr4_2:7742533-7742552 Msa0586530:CDS 40.0%
! CATTGAAGAAGTTTGAGGCT+AGG - chr4_2:7742687-7742706 None:intergenic 40.0%
GAGATAATACAAGTTGCTGG+TGG - chr4_2:7742760-7742779 None:intergenic 40.0%
ACTAGGGTCAACAAAGGTTA+TGG + chr4_2:7742987-7743006 Msa0586530:CDS 40.0%
GAAGCTGAAATGGGTAGTTA+TGG + chr4_2:7743042-7743061 Msa0586530:CDS 40.0%
!! ATGAATGGAAGCACTTGAAG+TGG + chr4_2:7743223-7743242 Msa0586530:CDS 40.0%
! ATTGAGGAGAGTGGATTTGA+GGG + chr4_2:7743411-7743430 Msa0586530:CDS 40.0%
GGATTTGAGGGAAGAATCAA+TGG + chr4_2:7743423-7743442 Msa0586530:CDS 40.0%
TGGTAGAGGCCTAGTAATTA+AGG + chr4_2:7743443-7743462 Msa0586530:CDS 40.0%
GGTAGAGGCCTAGTAATTAA+GGG + chr4_2:7743444-7743463 Msa0586530:CDS 40.0%
AGGCCTAGTAATTAAGGGTT+GGG + chr4_2:7743449-7743468 Msa0586530:CDS 40.0%
GTCAAAAATCCTCCAATTGC+AGG - chr4_2:7743501-7743520 None:intergenic 40.0%
! GATTTTTGACCCATTGTGGT+TGG + chr4_2:7743511-7743530 Msa0586530:CDS 40.0%
ACTATGGAAGCAATATGTGC+TGG + chr4_2:7743540-7743559 Msa0586530:CDS 40.0%
! AATATGTGCTGGTGTACCAA+TGG + chr4_2:7743551-7743570 Msa0586530:CDS 40.0%
AAAAGTGGCCATGTAACCAT+TGG - chr4_2:7743570-7743589 None:intergenic 40.0%
GGTGAAGAGTCCTATTCAAT+GGG + chr4_2:7743653-7743672 Msa0586530:CDS 40.0%
GTGAAGAGTCCTATTCAATG+GGG + chr4_2:7743654-7743673 Msa0586530:CDS 40.0%
GGAAGAAAAAAGTGGTGTGT+TGG + chr4_2:7743680-7743699 Msa0586530:CDS 40.0%
TTGTTTCCAATGATGGCACA+AGG + chr4_2:7742439-7742458 Msa0586530:CDS 40.0%
! AGTTTTGCAGTGTCCATCAT+GGG - chr4_2:7742475-7742494 None:intergenic 40.0%
!! TAGTTTTGCAGTGTCCATCA+TGG - chr4_2:7742476-7742495 None:intergenic 40.0%
GATGGACACTGCAAAACTAT+TGG + chr4_2:7742477-7742496 Msa0586530:CDS 40.0%
CAACCCCAAAAAATGCATCT+AGG + chr4_2:7742533-7742552 Msa0586530:CDS 40.0%
! CATTGAAGAAGTTTGAGGCT+AGG - chr4_2:7742687-7742706 None:intergenic 40.0%
GAGATAATACAAGTTGCTGG+TGG - chr4_2:7742760-7742779 None:intergenic 40.0%
ACTAGGGTCAACAAAGGTTA+TGG + chr4_2:7742987-7743006 Msa0586530:CDS 40.0%
GAAGCTGAAATGGGTAGTTA+TGG + chr4_2:7743042-7743061 Msa0586530:CDS 40.0%
!! ATGAATGGAAGCACTTGAAG+TGG + chr4_2:7743223-7743242 Msa0586530:CDS 40.0%
! ATTGAGGAGAGTGGATTTGA+GGG + chr4_2:7743411-7743430 Msa0586530:CDS 40.0%
GGATTTGAGGGAAGAATCAA+TGG + chr4_2:7743423-7743442 Msa0586530:CDS 40.0%
TGGTAGAGGCCTAGTAATTA+AGG + chr4_2:7743443-7743462 Msa0586530:CDS 40.0%
GGTAGAGGCCTAGTAATTAA+GGG + chr4_2:7743444-7743463 Msa0586530:CDS 40.0%
AGGCCTAGTAATTAAGGGTT+GGG + chr4_2:7743449-7743468 Msa0586530:CDS 40.0%
GTCAAAAATCCTCCAATTGC+AGG - chr4_2:7743501-7743520 None:intergenic 40.0%
! GATTTTTGACCCATTGTGGT+TGG + chr4_2:7743511-7743530 Msa0586530:CDS 40.0%
ACTATGGAAGCAATATGTGC+TGG + chr4_2:7743540-7743559 Msa0586530:CDS 40.0%
! AATATGTGCTGGTGTACCAA+TGG + chr4_2:7743551-7743570 Msa0586530:CDS 40.0%
AAAAGTGGCCATGTAACCAT+TGG - chr4_2:7743570-7743589 None:intergenic 40.0%
GGTGAAGAGTCCTATTCAAT+GGG + chr4_2:7743653-7743672 Msa0586530:CDS 40.0%
GTGAAGAGTCCTATTCAATG+GGG + chr4_2:7743654-7743673 Msa0586530:CDS 40.0%
GGAAGAAAAAAGTGGTGTGT+TGG + chr4_2:7743680-7743699 Msa0586530:CDS 40.0%
! GTTTTGCAGTGTCCATCATG+GGG - chr4_2:7742474-7742493 None:intergenic 45.0%
GTAGCACGTCATGTTGAATC+TGG + chr4_2:7742568-7742587 Msa0586530:CDS 45.0%
TCAAGATTCTCACACCCTTC+TGG - chr4_2:7742646-7742665 None:intergenic 45.0%
TTGCTGCAGTAAGTTGCTTC+TGG + chr4_2:7742842-7742861 Msa0586530:CDS 45.0%
GAAATGACCCTAGCACAAAC+AGG + chr4_2:7742964-7742983 Msa0586530:CDS 45.0%
AACAGGACTAGGGTCAACAA+AGG + chr4_2:7742981-7743000 Msa0586530:CDS 45.0%
!! CACCACAGTTGATAGAGCTA+GGG + chr4_2:7743310-7743329 Msa0586530:CDS 45.0%
!! AACCCTAGCTCTATCAACTG+TGG - chr4_2:7743315-7743334 None:intergenic 45.0%
! GATTGAGGAGAGTGGATTTG+AGG + chr4_2:7743410-7743429 Msa0586530:CDS 45.0%
GAGGGAAGAATCAATGGTAG+AGG + chr4_2:7743429-7743448 Msa0586530:CDS 45.0%
GAGGCCTAGTAATTAAGGGT+TGG + chr4_2:7743448-7743467 Msa0586530:CDS 45.0%
TTGTCACATCCTGCAATTGG+AGG + chr4_2:7743489-7743508 Msa0586530:CDS 45.0%
! GGAGGATTTTTGACCCATTG+TGG + chr4_2:7743507-7743526 Msa0586530:CDS 45.0%
CTGGTGTACCAATGGTTACA+TGG + chr4_2:7743559-7743578 Msa0586530:CDS 45.0%
GGGTGAAGAGTCCTATTCAA+TGG + chr4_2:7743652-7743671 Msa0586530:CDS 45.0%
TCTTCCTCACCCCATTGAAT+AGG - chr4_2:7743666-7743685 None:intergenic 45.0%
TGGGGTGAGGAAGAAAAAAG+TGG + chr4_2:7743672-7743691 Msa0586530:CDS 45.0%
!! GATTAGAGAGCTTGCTGAGA+TGG + chr4_2:7743779-7743798 Msa0586530:CDS 45.0%
! GCTTGCTGAGATGGCTAAAA+AGG + chr4_2:7743788-7743807 Msa0586530:CDS 45.0%
! GTTTTGCAGTGTCCATCATG+GGG - chr4_2:7742474-7742493 None:intergenic 45.0%
GTAGCACGTCATGTTGAATC+TGG + chr4_2:7742568-7742587 Msa0586530:CDS 45.0%
TCAAGATTCTCACACCCTTC+TGG - chr4_2:7742646-7742665 None:intergenic 45.0%
TTGCTGCAGTAAGTTGCTTC+TGG + chr4_2:7742842-7742861 Msa0586530:CDS 45.0%
GAAATGACCCTAGCACAAAC+AGG + chr4_2:7742964-7742983 Msa0586530:CDS 45.0%
AACAGGACTAGGGTCAACAA+AGG + chr4_2:7742981-7743000 Msa0586530:CDS 45.0%
!! CACCACAGTTGATAGAGCTA+GGG + chr4_2:7743310-7743329 Msa0586530:CDS 45.0%
!! AACCCTAGCTCTATCAACTG+TGG - chr4_2:7743315-7743334 None:intergenic 45.0%
! GATTGAGGAGAGTGGATTTG+AGG + chr4_2:7743410-7743429 Msa0586530:CDS 45.0%
GAGGGAAGAATCAATGGTAG+AGG + chr4_2:7743429-7743448 Msa0586530:CDS 45.0%
GAGGCCTAGTAATTAAGGGT+TGG + chr4_2:7743448-7743467 Msa0586530:CDS 45.0%
TTGTCACATCCTGCAATTGG+AGG + chr4_2:7743489-7743508 Msa0586530:CDS 45.0%
! GGAGGATTTTTGACCCATTG+TGG + chr4_2:7743507-7743526 Msa0586530:CDS 45.0%
CTGGTGTACCAATGGTTACA+TGG + chr4_2:7743559-7743578 Msa0586530:CDS 45.0%
GGGTGAAGAGTCCTATTCAA+TGG + chr4_2:7743652-7743671 Msa0586530:CDS 45.0%
TCTTCCTCACCCCATTGAAT+AGG - chr4_2:7743666-7743685 None:intergenic 45.0%
TGGGGTGAGGAAGAAAAAAG+TGG + chr4_2:7743672-7743691 Msa0586530:CDS 45.0%
!! GATTAGAGAGCTTGCTGAGA+TGG + chr4_2:7743779-7743798 Msa0586530:CDS 45.0%
! GCTTGCTGAGATGGCTAAAA+AGG + chr4_2:7743788-7743807 Msa0586530:CDS 45.0%
!! ATGTGGCCTTGTGCCATCAT+TGG - chr4_2:7742448-7742467 None:intergenic 50.0%
TGTCCATCATGGGGATCATG+TGG - chr4_2:7742465-7742484 None:intergenic 50.0%
GAGAATCTTGACATGCTGCC+TGG + chr4_2:7742655-7742674 Msa0586530:CDS 50.0%
ACCCTAGCACAAACAGGACT+AGG + chr4_2:7742970-7742989 Msa0586530:CDS 50.0%
CCCTAGTCCTGTTTGTGCTA+GGG - chr4_2:7742974-7742993 None:intergenic 50.0%
CCCTAGCACAAACAGGACTA+GGG + chr4_2:7742971-7742990 Msa0586530:CDS 50.0%
ACCCTAGTCCTGTTTGTGCT+AGG - chr4_2:7742975-7742994 None:intergenic 50.0%
!! CCTAGCTCTATCAACTGTGG+TGG - chr4_2:7743312-7743331 None:intergenic 50.0%
!! CCACCACAGTTGATAGAGCT+AGG + chr4_2:7743309-7743328 Msa0586530:CDS 50.0%
GGGCCCAACCCTTAATTACT+AGG - chr4_2:7743455-7743474 None:intergenic 50.0%
GAGTCCTATTCAATGGGGTG+AGG + chr4_2:7743659-7743678 Msa0586530:CDS 50.0%
!! ATGTGGCCTTGTGCCATCAT+TGG - chr4_2:7742448-7742467 None:intergenic 50.0%
TGTCCATCATGGGGATCATG+TGG - chr4_2:7742465-7742484 None:intergenic 50.0%
GAGAATCTTGACATGCTGCC+TGG + chr4_2:7742655-7742674 Msa0586530:CDS 50.0%
ACCCTAGCACAAACAGGACT+AGG + chr4_2:7742970-7742989 Msa0586530:CDS 50.0%
CCCTAGTCCTGTTTGTGCTA+GGG - chr4_2:7742974-7742993 None:intergenic 50.0%
CCCTAGCACAAACAGGACTA+GGG + chr4_2:7742971-7742990 Msa0586530:CDS 50.0%
ACCCTAGTCCTGTTTGTGCT+AGG - chr4_2:7742975-7742994 None:intergenic 50.0%
!! CCTAGCTCTATCAACTGTGG+TGG - chr4_2:7743312-7743331 None:intergenic 50.0%
!! CCACCACAGTTGATAGAGCT+AGG + chr4_2:7743309-7743328 Msa0586530:CDS 50.0%
GGGCCCAACCCTTAATTACT+AGG - chr4_2:7743455-7743474 None:intergenic 50.0%
GAGTCCTATTCAATGGGGTG+AGG + chr4_2:7743659-7743678 Msa0586530:CDS 50.0%
AGGCCACATGATCCCCATGA+TGG + chr4_2:7742459-7742478 Msa0586530:CDS 55.0%
! TTTGAGGCTAGGGCAAGTCC+AGG - chr4_2:7742676-7742695 None:intergenic 55.0%
AGGCCACATGATCCCCATGA+TGG + chr4_2:7742459-7742478 Msa0586530:CDS 55.0%
! TTTGAGGCTAGGGCAAGTCC+AGG - chr4_2:7742676-7742695 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 7742406 7743902 7742406 ID=Msa0586530;Name=Msa0586530
chr4_2 mRNA 7742406 7743902 7742406 ID=Msa0586530-mRNA-1;Parent=Msa0586530;Name=Msa0586530-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|498
chr4_2 exon 7742406 7743902 7742406 ID=Msa0586530-mRNA-1:exon:2016;Parent=Msa0586530-mRNA-1
chr4_2 CDS 7742406 7743902 7742406 ID=Msa0586530-mRNA-1:cds;Parent=Msa0586530-mRNA-1
Gene Sequence

>Msa0586530

ATGGCAACCCTAGATCCAAAACTACACTTTGTGTTGTTTCCAATGATGGCACAAGGCCACATGATCCCCATGATGGACACTGCAAAACTATTGGCACATCATGAAAATGTTGTAGTTACAATAGTAACAACCCCAAAAAATGCATCTAGGTTCACATCATTTGTAGCACGTCATGTTGAATCTGGTCTTCACATTCAATTCATCAAACTCAACTTTCCATGTAAAGAGTTTGGATTACCAGAAGGGTGTGAGAATCTTGACATGCTGCCTGGACTTGCCCTAGCCTCAAACTTCTTCAATGTATCAAAACTTCTCCAACAAGAAGTTGAAAAGATATTTGAAGAGTTAACACCACCAGCAACTTGTATTATCTCTGATACGATTTTGCCATATACAATCCACATAGCTAGAAAGTTCAATATTCCAAGAATTTCTTTTGCTGCAGTAAGTTGCTTCTGGCTCTACAATATACATAATTTAAATGCCATTAATATTATGGAAATCATGGCTAATAAAGAATCTGAATACTTTGATTTGCCTGATATCCCTGACAAAATTGAAATGACCCTAGCACAAACAGGACTAGGGTCAACAAAGGTTATGGAAGCCTTGAAACAATTTAATGAGGATATACTTGAAGCTGAAATGGGTAGTTATGGGATAATCACAAATTCTTTTGAGGAGTTAGAGCCAACATATGTAAGGGACTTGAAAAAGATTAGAAATGACAAAGTTTGGTGTATAGGACCTGTATCACTTAGTAACATTGATGAATTGGATAAGGTTCAAAGAGGTAATAGTAACAAAGTTTTAGTTGATGAATGGAAGCACTTGAAGTGGCTAAATTCTCATAAGGATGAGAGTGTTATATATGCAAGCCTTGGAAGTTTATGTAATCTAACACCACCACAGTTGATAGAGCTAGGGTTAGCATTAGAAGCAACAAAAAGACCTTTTATTTGGGTTATTAGAGAGGGAAATCAGTTAGAAGAGTTGAAAAAATGGATTGAGGAGAGTGGATTTGAGGGAAGAATCAATGGTAGAGGCCTAGTAATTAAGGGTTGGGCCCCTCAGTTATTGATTTTGTCACATCCTGCAATTGGAGGATTTTTGACCCATTGTGGTTGGAATTCTACTATGGAAGCAATATGTGCTGGTGTACCAATGGTTACATGGCCACTTTTTGCTGATCAATTTTTTAATGAATGTTTAGTTGTGCAAATATTGAAAGTTGGTGTAAAAATTGGGGTGAAGAGTCCTATTCAATGGGGTGAGGAAGAAAAAAGTGGTGTGTTGGTGAAGAAAGAAGATGTTGAAAGAGGAATAGAAGTGTTAATGGATGAGACAGATGAATGTAAAGAAAGAAGAAAAAGGATTAGAGAGCTTGCTGAGATGGCTAAAAAGGCTGTAGAAAAAGGTGGATCTTCTCACTCTAATGTTGCTTTGTTCATCCAAGATATCATGAAGATAAAAAATAAAGTTACAAAAACCATATGA

Protein sequence

>Msa0586530

MATLDPKLHFVLFPMMAQGHMIPMMDTAKLLAHHENVVVTIVTTPKNASRFTSFVARHVESGLHIQFIKLNFPCKEFGLPEGCENLDMLPGLALASNFFNVSKLLQQEVEKIFEELTPPATCIISDTILPYTIHIARKFNIPRISFAAVSCFWLYNIHNLNAINIMEIMANKESEYFDLPDIPDKIEMTLAQTGLGSTKVMEALKQFNEDILEAEMGSYGIITNSFEELEPTYVRDLKKIRNDKVWCIGPVSLSNIDELDKVQRGNSNKVLVDEWKHLKWLNSHKDESVIYASLGSLCNLTPPQLIELGLALEATKRPFIWVIREGNQLEELKKWIEESGFEGRINGRGLVIKGWAPQLLILSHPAIGGFLTHCGWNSTMEAICAGVPMVTWPLFADQFFNECLVVQILKVGVKIGVKSPIQWGEEEKSGVLVKKEDVERGIEVLMDETDECKERRKRIRELAEMAKKAVEKGGSSHSNVALFIQDIMKIKNKVTKTI*