AlfalfaGEDB | Msa1428380

M. sativa cultivar zhongmu-4 / Msa1428380

KEGG: K13496
GO: GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0006629 GO:0008150 GO:0008152 GO:0008194 GO:0008202 GO:0009058 GO:0009314 GO:0009411 GO:0009416 GO:0009605 GO:0009607 GO:0009628 GO:0009636 GO:0009812 GO:0009813 GO:0010224 GO:0010817 GO:0016128 GO:0016131 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0042221 GO:0042440 GO:0042445 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044464 GO:0046148 GO:0046527 GO:0050403 GO:0050502 GO:0050896 GO:0051552 GO:0051553 GO:0051554 GO:0051555 GO:0051704 GO:0051707 GO:0065007 GO:0065008 GO:0071704 GO:0080043 GO:0080044 GO:0080046 GO:0098754 GO:1901360 GO:1901576 GO:1901615 GO:1901617
PFAM: PF00201.21

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1428380	AES87307.2	92.169	498	39	0	1	498	1	498	0.0	952

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1428380	sp\|A0A2R4LMF9\|73C25_BARVU	54.004	487	217	6	5	490	10	490	0.0	530

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1428380	G7JEK5	92.169	498	39	0	1	498	1	498	0.0	952

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0008330	Msa1428380	0.816639	4.985831e-52	-8.615850e-47
Msa0059960	Msa1428380	-0.806941	6.440156e-50	-8.615850e-47
Msa0094420	Msa1428380	0.868417	6.633156e-66	-8.615850e-47
Msa0141670	Msa1428380	0.806645	7.437529e-50	-8.615850e-47
Msa0207180	Msa1428380	0.807152	5.812215e-50	-8.615850e-47
Msa0207220	Msa1428380	0.812488	4.134908e-51	-8.615850e-47
Msa0219660	Msa1428380	0.823277	1.510446e-53	-8.615850e-47
Msa0227490	Msa1428380	0.811271	7.608580e-51	-8.615850e-47
Msa0227500	Msa1428380	0.811496	6.801048e-51	-8.615850e-47
Msa0260960	Msa1428380	0.802583	5.236769e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1428380	MtrunA17_Chr4g0011051	92.169	498	39	0	1	498	1	498	0.0	952
Msa1428380	MtrunA17_Chr7g0265101	81.377	494	88	4	1	493	1	491	0.0	828
Msa1428380	MtrunA17_Chr7g0265051	79.108	493	99	3	1	493	1	489	0.0	811
Msa1428380	MtrunA17_Chr7g0265151	60.526	494	181	8	1	489	1	485	0.0	591
Msa1428380	MtrunA17_Chr7g0265041	57.637	491	197	7	9	494	11	495	0.0	558
Msa1428380	MtrunA17_Chr7g0275681	57.873	489	194	6	2	489	5	482	0.0	556
Msa1428380	MtrunA17_Chr5g0419761	49.497	497	233	9	1	489	1	487	6.04e-165	476
Msa1428380	MtrunA17_Chr5g0419771	47.755	490	242	6	8	491	35	516	7.78e-165	476
Msa1428380	MtrunA17_Chr1g0179901	48.049	487	246	5	8	491	15	497	1.03e-164	475
Msa1428380	MtrunA17_Chr7g0265111	50.307	489	225	7	8	488	38	516	2.79e-152	445

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1428380	AT2G36760.1	53.512	484	221	3	6	489	11	490	0.0	529
Msa1428380	AT2G36770.1	53.768	491	218	6	6	493	11	495	0.0	527
Msa1428380	AT2G36800.1	53.564	491	221	4	2	490	5	490	0.0	526
Msa1428380	AT2G36780.1	53.593	487	218	5	6	490	11	491	0.0	525
Msa1428380	AT2G36750.1	52.567	487	226	3	6	492	7	488	0.0	524
Msa1428380	AT2G36790.1	54.639	485	212	5	8	490	12	490	8.92e-179	511
Msa1428380	AT3G53160.1	49.194	496	233	7	1	489	1	484	1.02e-170	490
Msa1428380	AT3G53150.1	49.091	495	237	7	7	489	20	511	4.48e-165	477
Msa1428380	AT4G34131.1	39.879	494	268	14	5	487	4	479	3.36e-114	346
Msa1428380	AT4G34138.1	41.483	499	253	17	7	491	9	482	1.57e-113	344

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Find 91 sgRNAs with CRISPR-Local

Find 250 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGTGGCCATGTAACCAT+TGG	0.583630	tig0026340:+31744	None:intergenic
AAAGAGTTTGGATTACCAGA+AGG	0.576750	tig0026340:-32683	Msa1428380:CDS
AACAACACAAAGTGTAGTTT+TGG	0.332964	tig0026340:+32890	None:intergenic
AACAGGACTAGGGTCAACAA+AGG	0.692624	tig0026340:-32330	Msa1428380:CDS
AACCCTAGCTCTATCAACTG+TGG	0.685229	tig0026340:+31999	None:intergenic
AACTTTCCATGTAAAGAGTT+TGG	0.286014	tig0026340:-32695	Msa1428380:CDS
AAGAAAGAAGATGTTGAAAG+AGG	0.515057	tig0026340:-31606	Msa1428380:CDS
AAGAGGAATAGAAGTGTTAA+TGG	0.319780	tig0026340:-31589	Msa1428380:CDS
AAGAGTTTGGATTACCAGAA+GGG	0.580939	tig0026340:-32682	Msa1428380:CDS
AAGCTGAAATGGGTAGTTAT+GGG	0.442213	tig0026340:-32268	Msa1428380:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AACTTTCCATGTAAAGAGTT+TGG	-	tig0026340:31641-31660	Msa1428380:CDS	30.0%
TGATACATTGAAGAAGTTTG+AGG	+	tig0026340:31717-31736	None:intergenic	30.0%
AGCCTTGAAACAATTTAATG+AGG	-	tig0026340:32036-32055	Msa1428380:CDS	30.0%
GATATACTTGAAGCTGAAAT+GGG	-	tig0026340:32058-32077	Msa1428380:CDS	30.0%
AGATTAGAAATGGCAAAGTT+TGG	-	tig0026340:32146-32165	Msa1428380:CDS	30.0%
TCAATGTTACTAAGTGATAC+AGG	+	tig0026340:32181-32200	None:intergenic	30.0%
TGACAAAATCAATAACTGAG+GGG	+	tig0026340:32500-32519	None:intergenic	30.0%
GTGACAAAATCAATAACTGA+GGG	+	tig0026340:32501-32520	None:intergenic	30.0%
TGTGACAAAATCAATAACTG+AGG	+	tig0026340:32502-32521	None:intergenic	30.0%
GTTGTGCAAATATTGAAAGT+TGG	-	tig0026340:32643-32662	Msa1428380:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0026340	gene	31431	32927	31431	ID=Msa1428380;Name=Msa1428380
tig0026340	mRNA	31431	32927	31431	ID=Msa1428380-mRNA-1;Parent=Msa1428380;Name=Msa1428380-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|498
tig0026340	exon	31431	32927	31431	ID=Msa1428380-mRNA-1:exon:5945;Parent=Msa1428380-mRNA-1
tig0026340	CDS	31431	32927	31431	ID=Msa1428380-mRNA-1:cds;Parent=Msa1428380-mRNA-1

Gene Sequence

>Msa1428380

ATGGCAACCCTAGATCCAAAACTACACTTTGTGTTGTTTCCAATGATGGCACAAGGCCACATGATCCCCATGATGGACACTGCAAAACTATTGGCACATCATGAAAATGTTGTAGTTACAATAGTAACAACCCCAAAAAATGCATCTAGGTTCACATCATTTGTAGCACGTCATGTTGAATCTGGTCTTCACATTCAATTCATCAAACTCAACTTTCCATGTAAAGAGTTTGGATTACCAGAAGGGTGTGAGAATCTTGACATGCTGCCTGGACTTGCCCTAGCCTCAAACTTCTTCAATGTATCAAAACTTCTCCAACAAGAAGTTGAAAAGATATTTGAAGAGTTAACACCACCAGCAACTTGTATTATCTCTGATACGATTTTGCCATATACAATCCACATAGCTAGAAAGTTCAATATTCCAAGAATTTCTTTTGCTGCAGTAAGTTGCTTCTGGCTCTACAATATACATAATTTACATGCCATTAATATTATGGAAATCATGGCTAATAAAGAATCTGAATACTTTGATTTGCCTGATATCCCTGACAAAATTGAAATGACCCTAGCACAAACAGGACTAGGGTCAACAAAGGTTATGGAAGCCTTGAAACAATTTAATGAGGATATACTTGAAGCTGAAATGGGTAGTTATGGGATAATCACAAATTCTTTTGAGGAGTTAGAGCCAACATATGTAAGGGACTTGAAAAAGATTAGAAATGGCAAAGTTTGGTGTATAGGACCTGTATCACTTAGTAACATTGATGAATTGGATAAGGTTCAAAGAGGTAATAGTAACAAAGTTTTAGTTGATGAATGGAAGCACTTGAAGTGGCTAAATTCTCATAAGGATGAGAGTGTTATATATGCAAGCCTTGGAAGTTTATGTAATCTAACACCACCACAGTTGATAGAGCTAGGGTTAGCATTAGAAGCAACAAAAAGACCTTTTATTTGGGTTATTAGAGAGGGAAATCAGTTAGAAGAGTTGAAAAAATGGATTGAGGAGAGTGGATTTGAGGGAAGAATCAATGGTAGAGGCCTAGTAATTAAGGGTTGGGCCCCTCAGTTATTGATTTTGTCACATCCTGCAATTGGAGGATTTTTGACCCATTGTGGTTGGAATTCTACTATGGAAGCAATATGTGCTGGTGTACCAATGGTTACATGGCCACTTTTTGCTGATCAATTTTTTAATGAATGTTTAGTTGTGCAAATATTGAAAGTTGGTGTAAAAATTGGGGTGAAGAGTCCTATTCAATGGGGTGAGGAAGAAAAAAGTGGTGTGTTGGTGAAGAAAGAAGATGTTGAAAGAGGAATAGAAGTGTTAATGGATGAGACAGATGAATGTAAAGAAAGAAGAAAAAGGATTAGAGAGCTTGCTGAGATGGCTAAAAAGGCTGTAGAAAAAGGTGGATCTTCTCACTCTAATGTTGCTTTGTTCATCCAAGATATCATGAAGATAAAAAATAAAGTTACAAAAACCATATGA

Protein sequence

>Msa1428380

MATLDPKLHFVLFPMMAQGHMIPMMDTAKLLAHHENVVVTIVTTPKNASRFTSFVARHVESGLHIQFIKLNFPCKEFGLPEGCENLDMLPGLALASNFFNVSKLLQQEVEKIFEELTPPATCIISDTILPYTIHIARKFNIPRISFAAVSCFWLYNIHNLHAINIMEIMANKESEYFDLPDIPDKIEMTLAQTGLGSTKVMEALKQFNEDILEAEMGSYGIITNSFEELEPTYVRDLKKIRNGKVWCIGPVSLSNIDELDKVQRGNSNKVLVDEWKHLKWLNSHKDESVIYASLGSLCNLTPPQLIELGLALEATKRPFIWVIREGNQLEELKKWIEESGFEGRINGRGLVIKGWAPQLLILSHPAIGGFLTHCGWNSTMEAICAGVPMVTWPLFADQFFNECLVVQILKVGVKIGVKSPIQWGEEEKSGVLVKKEDVERGIEVLMDETDECKERRKRIRELAEMAKKAVEKGGSSHSNVALFIQDIMKIKNKVTKTI*