AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1428380


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1428380 MtrunA17_Chr4g0011051 92.169 498 39 0 1 498 1 498 0.0 952
Msa1428380 MtrunA17_Chr7g0265101 81.377 494 88 4 1 493 1 491 0.0 828
Msa1428380 MtrunA17_Chr7g0265051 79.108 493 99 3 1 493 1 489 0.0 811
Msa1428380 MtrunA17_Chr7g0265151 60.526 494 181 8 1 489 1 485 0.0 591
Msa1428380 MtrunA17_Chr7g0265041 57.637 491 197 7 9 494 11 495 0.0 558
Msa1428380 MtrunA17_Chr7g0275681 57.873 489 194 6 2 489 5 482 0.0 556
Msa1428380 MtrunA17_Chr5g0419761 49.497 497 233 9 1 489 1 487 6.04e-165 476
Msa1428380 MtrunA17_Chr5g0419771 47.755 490 242 6 8 491 35 516 7.78e-165 476
Msa1428380 MtrunA17_Chr1g0179901 48.049 487 246 5 8 491 15 497 1.03e-164 475
Msa1428380 MtrunA17_Chr7g0265111 50.307 489 225 7 8 488 38 516 2.79e-152 445
Msa1428380 MtrunA17_Chr7g0265141 48.880 491 239 7 1 486 1 484 6.19e-151 439
Msa1428380 MtrunA17_Chr7g0243931 40.574 488 279 8 7 491 15 494 5.28e-114 346
Msa1428380 MtrunA17_Chr8g0366391 38.182 495 290 8 1 492 1 482 7.13e-114 345
Msa1428380 MtrunA17_Chr4g0044501 38.509 483 278 9 8 487 9 475 1.98e-109 333
Msa1428380 MtrunA17_Chr7g0243631 39.024 492 281 9 7 491 11 490 5.16e-109 333
Msa1428380 MtrunA17_Chr7g0243951 38.697 491 283 10 7 491 9 487 1.96e-107 328
Msa1428380 MtrunA17_Chr7g0243681 37.271 491 286 9 7 491 9 483 7.12e-107 327
Msa1428380 MtrunA17_Chr4g0060511 37.074 499 284 13 7 491 9 491 1.62e-106 326
Msa1428380 MtrunA17_Chr7g0243861 38.730 488 288 8 7 491 12 491 4.55e-106 325
Msa1428380 MtrunA17_Chr5g0401851 37.882 491 290 8 6 491 7 487 4.67e-106 325
Msa1428380 MtrunA17_Chr4g0066261 37.626 497 278 14 7 492 11 486 8.45e-105 322
Msa1428380 MtrunA17_Chr4g0044511 37.728 493 281 13 1 487 32 504 7.27e-104 320
Msa1428380 MtrunA17_Chr7g0235051 37.190 484 260 11 7 486 9 452 2.40e-103 317
Msa1428380 MtrunA17_Chr7g0243871 35.928 501 300 10 1 497 1 484 8.46e-103 316
Msa1428380 MtrunA17_Chr7g0243771 37.525 501 292 11 4 497 1 487 2.37e-102 315
Msa1428380 MtrunA17_Chr4g0066151 37.298 496 274 12 8 493 17 485 6.56e-102 314
Msa1428380 MtrunA17_Chr4g0066221 37.854 494 280 11 7 492 11 485 1.09e-101 313
Msa1428380 MtrunA17_Chr4g0044521 38.589 482 267 12 7 485 9 464 1.74e-100 310
Msa1428380 MtrunA17_Chr7g0243801 37.550 498 290 11 7 497 5 488 5.62e-100 309
Msa1428380 MtrunA17_Chr5g0416741 38.086 491 282 9 8 491 12 487 8.83e-100 309
Msa1428380 MtrunA17_Chr6g0463891 37.275 499 281 10 8 493 11 490 7.32e-99 306
Msa1428380 MtrunA17_Chr4g0066281 37.449 494 261 14 7 489 12 468 1.66e-97 302
Msa1428380 MtrunA17_Chr4g0066131 35.887 496 279 13 8 492 12 479 4.03e-97 301
Msa1428380 MtrunA17_Chr4g0066201 35.516 504 290 13 2 498 11 486 8.68e-97 301
Msa1428380 MtrunA17_Chr7g0243781 36.200 500 289 12 1 491 1 479 1.98e-96 300
Msa1428380 MtrunA17_Chr8g0355221 38.020 505 279 16 8 498 14 498 6.08e-96 299
Msa1428380 MtrunA17_Chr4g0066171 34.469 499 288 13 2 492 14 481 2.26e-95 297
Msa1428380 MtrunA17_Chr6g0463861 35.743 498 278 13 7 492 11 478 1.99e-94 295
Msa1428380 MtrunA17_Chr4g0014061 34.524 504 301 12 1 498 1 481 3.70e-94 294
Msa1428380 MtrunA17_Chr7g0243851 36.566 495 255 14 7 495 9 450 1.22e-92 289
Msa1428380 MtrunA17_Chr4g0044481 40.146 411 210 7 9 418 27 402 3.16e-92 287
Msa1428380 MtrunA17_Chr7g0243761 36.747 498 252 12 8 491 10 458 1.04e-91 287
Msa1428380 MtrunA17_Chr2g0294931 35.758 495 290 12 7 492 11 486 2.72e-91 287
Msa1428380 MtrunA17_Chr6g0463851 36.759 506 282 14 7 498 11 492 2.76e-91 287
Msa1428380 MtrunA17_Chr1g0165701 36.546 498 278 14 8 491 14 487 4.82e-91 286
Msa1428380 MtrunA17_Chr7g0218311 35.944 498 282 13 7 492 16 488 9.46e-91 285
Msa1428380 MtrunA17_Chr2g0294921 35.152 495 293 12 7 492 160 635 2.29e-89 286
Msa1428380 MtrunA17_Chr8g0374931 35.354 495 292 12 7 492 11 486 2.80e-89 281
Msa1428380 MtrunA17_Chr8g0374971 34.615 494 293 13 8 491 11 484 1.52e-88 280
Msa1428380 MtrunA17_Chr8g0374901 33.936 498 293 13 7 493 12 484 3.24e-86 273
Msa1428380 MtrunA17_Chr5g0428081 36.089 496 285 14 7 492 11 484 5.99e-86 273
Msa1428380 MtrunA17_Chr5g0410941 34.949 495 290 13 7 492 23 494 4.87e-85 271
Msa1428380 MtrunA17_Chr5g0416821 36.310 504 266 15 8 493 13 479 3.46e-82 263
Msa1428380 MtrunA17_Chr8g0374941 34.949 495 294 12 7 493 949 1423 4.55e-82 278
Msa1428380 MtrunA17_Chr8g0374941 35.579 475 278 13 7 473 11 465 2.05e-78 267
Msa1428380 MtrunA17_Chr8g0374941 35.456 471 276 14 7 469 476 926 3.24e-72 249
Msa1428380 MtrunA17_Chr8g0350881 34.269 499 292 13 8 493 11 486 4.20e-80 258
Msa1428380 MtrunA17_Chr7g0243811 36.047 430 221 13 21 432 1 394 1.91e-74 240
Msa1428380 MtrunA17_Chr2g0294941 37.883 359 204 7 122 472 17 364 2.15e-70 229
Msa1428380 MtrunA17_Chr5g0440421 30.724 511 313 16 3 490 4 496 1.57e-65 219
Msa1428380 MtrunA17_Chr2g0307961 33.735 498 279 18 5 488 9 469 1.86e-60 206
Msa1428380 MtrunA17_Chr4g0050341 31.400 500 278 15 9 479 19 482 3.54e-60 205
Msa1428380 MtrunA17_Chr7g0243611 38.854 314 169 9 128 438 2 295 1.00e-59 198
Msa1428380 MtrunA17_Chr8g0369341 30.739 501 302 15 7 493 5 474 2.12e-59 203
Msa1428380 MtrunA17_Chr7g0243711 41.129 248 137 6 248 491 78 320 1.42e-58 196
Msa1428380 MtrunA17_Chr7g0217881 31.643 493 294 15 4 488 5 462 1.07e-57 198
Msa1428380 MtrunA17_Chr3g0078841 30.814 516 286 17 7 492 8 482 2.26e-57 197
Msa1428380 MtrunA17_Chr8g0336331 29.880 502 308 14 7 492 8 481 5.71e-56 194
Msa1428380 MtrunA17_Chr5g0420801 28.513 491 316 11 7 493 5 464 1.12e-55 192
Msa1428380 MtrunA17_Chr6g0454181 29.354 511 302 14 7 492 8 484 1.75e-55 192
Msa1428380 MtrunA17_Chr6g0454301 30.545 514 282 17 7 488 261 731 7.25e-55 196
Msa1428380 MtrunA17_Chr6g0454301 35.200 250 136 6 245 490 5 232 6.85e-35 139
Msa1428380 MtrunA17_Chr6g0453951 29.191 507 300 15 7 488 55 527 2.31e-54 191
Msa1428380 MtrunA17_Chr6g0454401 29.921 508 296 15 7 488 8 481 4.80e-54 189
Msa1428380 MtrunA17_Chr6g0454331 29.231 520 301 15 5 494 3 485 5.78e-53 186
Msa1428380 MtrunA17_Chr6g0454141 29.688 512 299 15 7 492 8 484 7.25e-53 186
Msa1428380 MtrunA17_Chr6g0454341 28.008 507 312 14 7 492 8 482 1.15e-52 185
Msa1428380 MtrunA17_Chr8g0361411 29.637 496 298 16 6 492 5 458 2.50e-52 184
Msa1428380 MtrunA17_Chr2g0329111 28.125 512 317 15 7 497 4 485 2.90e-52 184
Msa1428380 MtrunA17_Chr6g0462531 29.792 480 291 15 11 476 6 453 3.28e-52 183
Msa1428380 MtrunA17_Chr5g0431361 28.921 491 288 14 9 487 12 453 5.82e-52 182
Msa1428380 MtrunA17_Chr6g0454191 28.627 517 299 14 7 492 8 485 8.59e-52 182
Msa1428380 MtrunA17_Chr6g0454351 30.350 514 280 18 1 488 4 465 8.73e-52 182
Msa1428380 MtrunA17_Chr6g0454261 29.563 504 314 16 7 494 8 486 1.75e-51 182
Msa1428380 MtrunA17_Chr6g0454151 29.941 511 289 17 7 488 8 478 2.81e-51 181
Msa1428380 MtrunA17_Chr6g0454321 30.120 498 275 15 7 473 8 463 3.93e-51 184
Msa1428380 MtrunA17_Chr6g0462571 29.448 489 278 17 11 476 6 450 4.52e-51 181
Msa1428380 MtrunA17_Chr6g0454361 29.518 498 310 14 7 488 9 481 6.00e-51 181
Msa1428380 MtrunA17_Chr7g0231631 39.286 280 139 6 219 491 8 263 7.78e-51 174
Msa1428380 MtrunA17_Chr2g0278711 28.968 504 309 15 7 492 9 481 7.86e-51 180
Msa1428380 MtrunA17_Chr8g0359821 28.767 511 307 16 7 494 8 484 1.08e-50 180
Msa1428380 MtrunA17_Chr6g0464841 30.165 484 287 18 9 484 11 451 1.21e-50 179
Msa1428380 MtrunA17_Chr6g0464871 30.785 484 284 20 9 484 23 463 2.15e-50 179
Msa1428380 MtrunA17_Chr1g0159551 28.367 490 290 16 14 489 19 461 7.16e-50 177
Msa1428380 MtrunA17_Chr6g0454121 28.599 514 301 13 7 492 8 483 2.49e-49 176
Msa1428380 MtrunA17_Chr6g0453961 28.094 509 306 14 6 488 16 490 2.94e-49 176
Msa1428380 MtrunA17_Chr6g0454201 28.988 514 300 15 7 492 9 485 3.30e-49 176
Msa1428380 MtrunA17_Chr3g0092641 28.169 497 310 14 9 488 12 478 3.80e-49 176
Msa1428380 MtrunA17_Chr8g0373301 30.642 483 257 16 36 476 9 455 3.84e-49 175
Msa1428380 MtrunA17_Chr1g0173121 28.138 494 295 16 11 489 16 464 6.25e-49 174
Msa1428380 MtrunA17_Chr6g0464861 30.928 485 281 20 9 484 11 450 1.40e-48 173
Msa1428380 MtrunA17_Chr5g0431371 29.814 483 291 16 9 487 10 448 2.20e-48 172
Msa1428380 MtrunA17_Chr7g0232391 28.659 492 286 19 8 476 5 454 2.23e-48 173
Msa1428380 MtrunA17_Chr7g0243911 41.837 196 109 3 278 471 22 214 2.37e-48 166
Msa1428380 MtrunA17_Chr6g0454291 29.297 512 297 15 5 488 3 477 4.00e-48 172
Msa1428380 MtrunA17_Chr5g0442541 27.689 502 305 13 7 488 3 466 4.73e-48 172
Msa1428380 MtrunA17_Chr3g0112761 27.689 502 286 13 9 490 8 452 6.22e-48 172
Msa1428380 MtrunA17_Chr5g0426431 29.518 498 302 14 9 488 12 478 7.30e-48 172
Msa1428380 MtrunA17_Chr6g0452771 29.860 499 307 17 7 488 8 480 1.08e-47 172
Msa1428380 MtrunA17_Chr6g0454131 28.600 507 302 15 7 488 8 479 2.09e-47 171
Msa1428380 MtrunA17_Chr5g0448521 27.200 500 312 14 7 488 3 468 2.39e-47 170
Msa1428380 MtrunA17_Chr3g0118671 28.880 509 305 18 4 489 1 475 5.57e-47 169
Msa1428380 MtrunA17_Chr7g0232411 27.888 502 287 21 8 481 5 459 8.40e-47 169
Msa1428380 MtrunA17_Chr5g0423981 28.889 495 284 16 6 488 7 445 8.79e-47 168
Msa1428380 MtrunA17_Chr8g0361371 29.191 507 270 16 7 476 5 459 9.00e-47 169
Msa1428380 MtrunA17_Chr8g0336691 27.146 501 301 17 4 481 8 467 1.27e-46 174
Msa1428380 MtrunA17_Chr8g0336691 28.824 510 296 20 8 494 918 1383 2.09e-46 174
Msa1428380 MtrunA17_Chr8g0336691 28.279 488 276 19 8 481 479 906 8.13e-40 154
Msa1428380 MtrunA17_Chr6g0462521 30.550 491 259 18 11 476 6 439 1.36e-46 168
Msa1428380 MtrunA17_Chr3g0112771 27.273 495 305 16 11 497 14 461 1.48e-46 168
Msa1428380 MtrunA17_Chr8g0382021 29.532 491 292 19 14 489 39 490 2.43e-46 168
Msa1428380 MtrunA17_Chr6g0454211 28.764 518 304 14 5 494 293 773 3.50e-46 172
Msa1428380 MtrunA17_Chr6g0454211 27.660 282 138 11 129 390 1 236 9.75e-20 92.8
Msa1428380 MtrunA17_Chr5g0431401 28.074 488 301 15 5 487 6 448 5.20e-46 166
Msa1428380 MtrunA17_Chr5g0414321 29.142 501 287 20 8 493 10 457 5.32e-46 167
Msa1428380 MtrunA17_Chr7g0275511 28.713 505 289 18 6 482 12 473 1.18e-45 166
Msa1428380 MtrunA17_Chr6g0462541 27.879 495 280 19 11 476 6 452 1.38e-45 166
Msa1428380 MtrunA17_Chr8g0377921 28.543 494 302 16 11 488 6 464 1.46e-45 165
Msa1428380 MtrunA17_Chr5g0431421 29.039 489 297 15 5 488 6 449 1.92e-45 165
Msa1428380 MtrunA17_Chr8g0370941 25.996 527 304 15 9 493 8 490 2.14e-45 166
Msa1428380 MtrunA17_Chr3g0118691 27.701 509 309 13 7 491 13 486 2.25e-45 165
Msa1428380 MtrunA17_Chr8g0336651 28.039 510 302 17 8 494 780 1247 2.66e-45 170
Msa1428380 MtrunA17_Chr8g0336651 25.761 493 306 15 4 476 1 453 1.62e-37 147
Msa1428380 MtrunA17_Chr8g0336651 34.091 264 130 8 220 481 547 768 1.31e-36 144
Msa1428380 MtrunA17_Chr6g0464881 28.427 496 298 17 9 493 11 460 3.08e-45 164
Msa1428380 MtrunA17_Chr5g0431441 27.755 490 303 12 9 488 18 466 4.45e-45 164
Msa1428380 MtrunA17_Chr7g0232341 29.495 495 286 20 20 490 17 472 5.72e-45 164
Msa1428380 MtrunA17_Chr5g0414331 28.916 498 274 20 8 484 12 450 1.32e-44 163
Msa1428380 MtrunA17_Chr8g0335141 28.429 503 287 17 1 476 1 457 3.15e-44 162
Msa1428380 MtrunA17_Chr5g0442561 27.613 507 306 18 7 488 3 473 3.17e-44 162
Msa1428380 MtrunA17_Chr8g0339601 37.455 275 133 8 218 475 66 318 3.62e-44 158
Msa1428380 MtrunA17_Chr5g0442601 28.431 510 302 16 7 488 402 876 3.67e-44 166
Msa1428380 MtrunA17_Chr5g0442601 26.518 313 168 9 121 413 63 333 1.51e-22 101
Msa1428380 MtrunA17_Chr6g0462551 28.629 496 278 18 10 476 5 453 3.78e-44 162
Msa1428380 MtrunA17_Chr8g0339451 36.396 283 141 7 218 483 199 459 4.52e-44 161
Msa1428380 MtrunA17_Chr8g0347271 28.337 487 291 17 11 480 21 466 7.64e-44 161
Msa1428380 MtrunA17_Chr3g0106231 27.291 502 278 16 9 489 18 453 8.07e-44 161
Msa1428380 MtrunA17_Chr7g0232331 28.261 506 297 19 9 490 6 469 9.10e-44 160
Msa1428380 MtrunA17_Chr1g0207981 28.346 508 299 21 4 488 8 473 1.00e-43 160
Msa1428380 MtrunA17_Chr1g0153451 26.386 523 297 20 4 494 1 467 1.01e-43 160
Msa1428380 MtrunA17_Chr8g0339631 34.520 281 146 8 218 483 207 464 1.08e-43 160
Msa1428380 MtrunA17_Chr7g0232401 26.953 512 285 20 8 483 5 463 1.87e-43 160
Msa1428380 MtrunA17_Chr4g0053501 28.350 515 299 21 1 492 1 468 2.06e-43 160
Msa1428380 MtrunA17_Chr8g0357361 40.796 201 112 4 218 418 61 254 2.57e-43 154
Msa1428380 MtrunA17_Chr5g0412131 28.543 494 302 18 9 487 12 469 4.20e-43 159
Msa1428380 MtrunA17_Chr1g0207971 27.953 508 285 21 8 491 7 457 4.24e-43 159
Msa1428380 MtrunA17_Chr6g0449931 28.257 499 289 18 4 476 1 456 5.11e-43 159
Msa1428380 MtrunA17_Chr8g0339461 30.469 384 223 10 119 483 109 467 5.32e-43 159
Msa1428380 MtrunA17_Chr3g0098111 27.470 506 330 14 1 498 1 477 5.58e-43 159
Msa1428380 MtrunA17_Chr8g0380531 28.485 495 297 16 8 489 9 459 7.84e-43 158
Msa1428380 MtrunA17_Chr8g0334831 28.435 524 302 17 4 495 1 483 1.50e-42 157
Msa1428380 MtrunA17_Chr6g0459311 34.962 266 142 6 220 476 217 460 2.27e-42 157
Msa1428380 MtrunA17_Chr4g0066141 42.614 176 87 5 324 492 188 356 3.37e-42 154
Msa1428380 MtrunA17_Chr4g0066141 27.692 195 115 5 39 230 9 180 8.21e-15 75.9
Msa1428380 MtrunA17_Chr8g0347281 27.944 501 275 17 11 480 20 465 3.61e-42 156
Msa1428380 MtrunA17_Chr5g0412111 28.425 489 308 17 9 487 5 461 4.16e-42 156
Msa1428380 MtrunA17_Chr8g0336741 27.655 499 281 17 7 475 11 459 5.15e-42 156
Msa1428380 MtrunA17_Chr5g0429711 26.511 513 297 20 1 487 3 461 6.00e-42 155
Msa1428380 MtrunA17_Chr3g0118701 26.210 496 327 12 7 488 13 483 8.62e-42 155
Msa1428380 MtrunA17_Chr6g0486251 35.448 268 138 7 220 476 210 453 1.46e-41 154
Msa1428380 MtrunA17_Chr6g0486201 35.448 268 138 7 220 476 210 453 1.46e-41 154
Msa1428380 MtrunA17_Chr8g0334861 36.029 272 136 7 220 476 204 452 2.74e-41 154
Msa1428380 MtrunA17_Chr3g0079731 32.526 289 154 6 218 485 210 478 3.00e-41 154
Msa1428380 MtrunA17_Chr5g0442581 26.459 514 307 17 7 488 3 477 3.21e-41 155
Msa1428380 MtrunA17_Chr1g0161351 27.921 505 304 19 8 491 36 501 3.31e-41 154
Msa1428380 MtrunA17_Chr6g0464921 27.699 491 297 19 9 487 11 455 3.43e-41 153
Msa1428380 MtrunA17_Chr3g0118711 27.059 510 305 18 7 488 11 481 3.61e-41 154
Msa1428380 MtrunA17_Chr2g0302991 27.000 500 310 20 7 489 3 464 4.69e-41 153
Msa1428380 MtrunA17_Chr7g0249931 27.439 492 304 16 8 490 39 486 6.14e-41 153
Msa1428380 MtrunA17_Chr7g0250001 27.255 499 298 20 4 488 1 448 6.91e-41 152
Msa1428380 MtrunA17_Chr5g0442491 27.308 509 307 16 7 488 3 475 8.48e-41 152
Msa1428380 MtrunA17_Chr8g0335161 35.766 274 132 8 220 477 211 456 9.22e-41 152
Msa1428380 MtrunA17_Chr7g0232311 31.410 312 168 10 177 476 175 452 9.41e-41 152
Msa1428380 MtrunA17_Chr3g0122001 27.767 515 302 19 2 487 479 952 1.06e-40 156
Msa1428380 MtrunA17_Chr3g0122001 28.608 388 239 11 119 487 105 473 1.53e-39 153
Msa1428380 MtrunA17_Chr8g0377941 29.948 384 224 12 119 489 112 463 2.36e-40 151
Msa1428380 MtrunA17_Chr5g0442521 26.562 512 308 15 7 488 3 476 2.70e-40 151
Msa1428380 MtrunA17_Chr7g0218791 27.992 493 269 21 9 476 5 436 4.25e-40 150
Msa1428380 MtrunA17_Chr5g0412101 29.920 498 291 20 9 487 12 470 8.49e-40 150
Msa1428380 MtrunA17_Chr8g0365811 27.455 499 308 18 7 487 495 957 1.35e-39 153
Msa1428380 MtrunA17_Chr8g0365811 27.626 438 270 15 1 416 1 413 1.08e-32 132
Msa1428380 MtrunA17_Chr5g0442511 34.397 282 154 7 220 487 229 493 1.43e-39 149
Msa1428380 MtrunA17_Chr3g0121991 27.129 505 324 16 2 490 72 548 1.83e-39 150
Msa1428380 MtrunA17_Chr8g0336731 27.237 503 301 17 11 492 34 492 2.24e-39 149
Msa1428380 MtrunA17_Chr3g0118771 27.419 496 321 14 7 488 19 489 3.13e-39 149
Msa1428380 MtrunA17_Chr1g0207861 28.715 498 299 19 9 487 8 468 4.33e-39 148
Msa1428380 MtrunA17_Chr4g0053321 27.660 517 298 21 1 492 18 483 4.50e-39 148
Msa1428380 MtrunA17_Chr8g0339441 35.985 264 129 6 227 476 181 418 6.53e-39 146
Msa1428380 MtrunA17_Chr7g0249981 28.081 495 293 19 7 488 23 467 7.04e-39 147
Msa1428380 MtrunA17_Chr4g0032331 27.530 494 297 18 10 491 9 453 8.22e-39 147
Msa1428380 MtrunA17_Chr7g0218841 26.423 492 286 16 9 484 6 437 9.84e-39 146
Msa1428380 MtrunA17_Chr6g0454221 36.929 241 131 6 248 486 8 229 1.23e-38 142
Msa1428380 MtrunA17_Chr2g0302961 25.703 498 322 18 7 489 3 467 1.48e-38 146
Msa1428380 MtrunA17_Chr7g0218831 27.366 486 288 18 9 484 6 436 1.75e-38 145
Msa1428380 MtrunA17_Chr1g0207951 27.485 513 292 18 1 489 116 572 2.26e-38 149
Msa1428380 MtrunA17_Chr1g0207951 25.889 506 315 18 1 489 648 1110 6.50e-37 145
Msa1428380 MtrunA17_Chr8g0334851 35.231 281 140 8 220 483 210 465 1.43e-37 144
Msa1428380 MtrunA17_Chr1g0207831 26.562 512 306 21 1 489 1 465 1.66e-37 143
Msa1428380 MtrunA17_Chr6g0454251 30.733 423 225 16 5 390 3 394 1.89e-37 142
Msa1428380 MtrunA17_Chr1g0153461 38.605 215 109 6 278 481 4 206 2.72e-37 136
Msa1428380 MtrunA17_Chr6g0454271 33.670 297 159 9 209 494 24 293 3.77e-37 138
Msa1428380 MtrunA17_Chr5g0403641 32.867 286 154 7 220 486 235 501 6.70e-37 142
Msa1428380 MtrunA17_Chr6g0454171 27.473 364 206 10 129 488 1 310 2.54e-36 137
Msa1428380 MtrunA17_Chr3g0106251 30.938 320 178 9 173 489 16 295 2.58e-36 137
Msa1428380 MtrunA17_Chr3g0118661 25.247 507 313 13 7 486 11 478 5.64e-36 139
Msa1428380 MtrunA17_Chr5g0432731 31.752 274 157 7 221 490 52 299 6.60e-36 135
Msa1428380 MtrunA17_Chr8g0355011 29.073 399 189 13 116 493 42 367 8.98e-36 136
Msa1428380 MtrunA17_Chr6g0454371 39.683 189 96 4 300 488 1 171 2.06e-35 130
Msa1428380 MtrunA17_Chr4g0040711 26.130 509 299 17 8 492 7 462 3.27e-35 137
Msa1428380 MtrunA17_Chr4g0072761 33.459 266 144 8 220 485 218 450 4.54e-35 136
Msa1428380 MtrunA17_Chr4g0040691 26.550 516 301 19 1 492 1 462 7.85e-35 135
Msa1428380 MtrunA17_Chr1g0207931 25.720 486 280 13 8 489 91 499 8.78e-35 136
Msa1428380 MtrunA17_Chr5g0409591 27.296 392 222 10 105 450 76 450 8.99e-35 136
Msa1428380 MtrunA17_Chr7g0218821 26.025 488 306 18 9 485 5 448 1.32e-34 135
Msa1428380 MtrunA17_Chr7g0241781 26.509 464 273 20 7 465 7 407 1.42e-34 134
Msa1428380 MtrunA17_Chr5g0429681 25.749 501 315 21 1 484 36 496 2.23e-34 135
Msa1428380 MtrunA17_Chr7g0218811 24.846 487 300 18 9 484 15 446 2.31e-34 134
Msa1428380 MtrunA17_Chr5g0426401 33.091 275 163 7 216 488 56 311 6.87e-34 130
Msa1428380 MtrunA17_Chr5g0401721 26.815 496 307 16 17 492 16 475 8.24e-34 133
Msa1428380 MtrunA17_Chr3g0118751 25.400 500 303 14 4 488 1 445 4.54e-33 130
Msa1428380 MtrunA17_Chr7g0241801 26.526 475 265 20 5 467 4 406 8.93e-33 129
Msa1428380 MtrunA17_Chr3g0118721 30.769 273 169 6 221 491 39 293 9.70e-33 126
Msa1428380 MtrunA17_Chr8g0367221 26.316 475 294 15 8 465 1287 1722 1.23e-32 132
Msa1428380 MtrunA17_Chr8g0367221 27.804 428 256 17 8 415 11 405 3.73e-31 128
Msa1428380 MtrunA17_Chr8g0367221 26.964 471 296 15 8 465 797 1232 8.98e-31 127
Msa1428380 MtrunA17_Chr7g0232351 27.941 408 235 17 8 390 5 378 2.39e-31 124
Msa1428380 MtrunA17_Chr3g0079711 36.082 194 102 4 304 485 3 186 6.76e-31 118
Msa1428380 MtrunA17_Chr5g0393591 24.899 494 285 16 9 489 17 437 1.42e-30 124
Msa1428380 MtrunA17_Chr5g0448551 27.181 493 250 23 6 464 6 423 1.67e-30 123
Msa1428380 MtrunA17_Chr4g0072771 37.788 217 114 6 269 485 268 463 3.80e-30 122
Msa1428380 MtrunA17_Chr6g0464091 29.356 419 232 18 5 398 14 393 1.31e-29 121
Msa1428380 MtrunA17_Chr8g0336321 27.215 474 285 15 8 461 6 439 2.00e-29 120
Msa1428380 MtrunA17_Chr8g0336251 27.215 474 285 15 8 461 6 439 2.20e-29 120
Msa1428380 MtrunA17_Chr1g0196851 27.731 476 282 18 1 461 41 469 4.58e-29 120
Msa1428380 MtrunA17_Chr8g0336261 42.857 147 67 3 300 446 1 130 5.27e-29 111
Msa1428380 MtrunA17_Chr6g0466831 28.506 435 245 20 8 420 17 407 7.91e-29 119
Msa1428380 MtrunA17_Chr4g0029151 27.708 480 268 20 4 461 15 437 8.77e-29 119
Msa1428380 MtrunA17_Chr4g0042891 26.901 513 308 21 5 495 3 470 1.83e-28 117
Msa1428380 MtrunA17_Chr4g0042931 25.889 506 320 19 5 495 3 468 6.60e-28 116
Msa1428380 MtrunA17_Chr2g0278721 27.673 477 287 21 8 464 516 954 9.85e-28 117
Msa1428380 MtrunA17_Chr2g0278721 26.013 469 298 19 8 465 14 444 1.87e-26 113
Msa1428380 MtrunA17_Chr6g0466841 26.744 430 259 19 8 420 17 407 1.93e-27 114
Msa1428380 MtrunA17_Chr4g0069611 26.737 475 282 22 8 465 14 439 2.26e-27 114
Msa1428380 MtrunA17_Chr7g0249961 32.093 215 127 6 276 490 67 262 5.58e-27 109
Msa1428380 MtrunA17_Chr2g0283041 25.658 456 285 15 8 451 6 419 1.58e-26 112
Msa1428380 MtrunA17_Chr4g0029131 26.226 469 289 18 4 461 7 429 2.39e-26 112
Msa1428380 MtrunA17_Chr7g0243921 36.264 182 107 4 7 188 38 210 4.16e-26 106
Msa1428380 MtrunA17_Chr2g0278741 27.463 477 281 21 8 465 96 526 5.30e-26 111
Msa1428380 MtrunA17_Chr7g0243731 56.338 71 31 0 348 418 6 76 1.17e-25 100
Msa1428380 MtrunA17_Chr8g0337381 42.424 132 63 4 350 481 1 119 1.79e-25 101
Msa1428380 MtrunA17_Chr6g0482061 33.333 267 146 10 219 475 223 467 4.47e-25 108
Msa1428380 MtrunA17_Chr2g0319761 25.793 473 291 16 6 462 5 433 4.90e-25 107
Msa1428380 MtrunA17_Chr2g0319801 27.719 469 286 18 8 462 7 436 5.91e-24 104
Msa1428380 MtrunA17_Chr6g0454231 28.676 272 136 6 220 490 7 221 2.64e-23 102
Msa1428380 MtrunA17_Chr2g0319731 25.786 477 285 16 8 462 24 453 1.81e-22 100
Msa1428380 MtrunA17_Chr3g0092031 36.047 172 91 6 280 448 6 161 2.97e-22 94.7
Msa1428380 MtrunA17_Chr5g0431431 29.680 219 118 4 221 438 156 339 5.41e-21 94.4
Msa1428380 MtrunA17_Chr1g0207881 37.063 143 76 5 349 489 256 386 1.28e-20 94.0
Msa1428380 MtrunA17_Chr7g0272701 34.266 143 93 1 85 227 11 152 3.24e-20 87.4
Msa1428380 MtrunA17_Chr2g0302851 27.251 411 238 14 8 398 15 384 3.89e-20 93.2
Msa1428380 MtrunA17_Chr5g0427571 31.429 245 152 6 221 463 45 275 8.36e-20 90.1
Msa1428380 MtrunA17_Chr2g0319791 24.722 449 303 14 6 451 5 421 6.69e-19 89.4
Msa1428380 MtrunA17_Chr2g0319751 26.078 464 290 20 1 451 475 898 1.01e-18 89.7
Msa1428380 MtrunA17_Chr2g0319751 25.435 460 269 21 8 456 7 403 1.41e-16 83.2
Msa1428380 MtrunA17_Chr4g0039881 38.514 148 73 6 275 415 240 376 3.39e-18 87.0
Msa1428380 MtrunA17_Chr7g0243721 41.176 119 66 3 207 323 19 135 7.70e-18 80.5
Msa1428380 MtrunA17_Chr2g0321331 28.372 215 124 6 281 495 87 271 4.68e-16 78.6
Msa1428380 MtrunA17_Chr7g0231651 31.606 193 113 6 8 192 13 194 3.07e-14 72.0
Msa1428380 MtrunA17_Chr7g0265071 58.333 60 24 1 431 489 1 60 1.32e-13 65.9
Msa1428380 MtrunA17_Chr6g0454391 39.241 79 34 1 365 443 11 75 5.58e-13 65.9
Msa1428380 MtrunA17_Chr4g0029161 24.094 469 271 19 4 461 7 401 6.24e-13 70.5
Msa1428380 MtrunA17_Chr6g0453981 28.755 233 152 8 129 351 1 229 7.15e-13 68.2
Msa1428380 MtrunA17_Chr4g0066231 34.615 78 50 1 389 466 1 77 6.03e-12 61.2
Msa1428380 MtrunA17_Chr5g0426411 32.000 150 87 3 7 150 10 150 4.98e-11 61.6
Msa1428380 MtrunA17_Chr6g0453941 31.544 149 91 4 177 324 119 257 5.69e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1428380 AT2G36760.1 53.512 484 221 3 6 489 11 490 0.0 529
Msa1428380 AT2G36770.1 53.768 491 218 6 6 493 11 495 0.0 527
Msa1428380 AT2G36800.1 53.564 491 221 4 2 490 5 490 0.0 526
Msa1428380 AT2G36780.1 53.593 487 218 5 6 490 11 491 0.0 525
Msa1428380 AT2G36750.1 52.567 487 226 3 6 492 7 488 0.0 524
Msa1428380 AT2G36790.1 54.639 485 212 5 8 490 12 490 8.92e-179 511
Msa1428380 AT3G53160.1 49.194 496 233 7 1 489 1 484 1.02e-170 490
Msa1428380 AT3G53150.1 49.091 495 237 7 7 489 20 511 4.48e-165 477
Msa1428380 AT4G34131.1 39.879 494 268 14 5 487 4 479 3.36e-114 346
Msa1428380 AT4G34138.1 41.483 499 253 17 7 491 9 482 1.57e-113 344
Msa1428380 AT2G15480.2 38.153 498 276 11 7 487 8 490 6.37e-113 343
Msa1428380 AT2G15480.1 38.571 490 275 11 7 487 8 480 6.76e-112 340
Msa1428380 AT2G15490.3 40.000 490 268 12 7 487 5 477 4.25e-111 338
Msa1428380 AT2G15490.1 40.162 493 266 14 7 487 5 480 8.85e-110 335
Msa1428380 AT4G34135.1 38.571 490 275 12 7 487 9 481 7.00e-97 301
Msa1428380 AT2G16890.2 33.803 497 283 17 9 492 9 472 7.75e-76 246
Msa1428380 AT5G14860.1 34.911 507 271 18 9 491 8 479 9.55e-75 244
Msa1428380 AT2G16890.3 34.532 417 240 13 9 415 9 402 3.52e-68 225
Msa1428380 AT1G73880.1 32.114 492 292 15 7 490 12 469 7.61e-68 225
Msa1428380 AT1G10400.1 31.400 500 282 19 7 487 5 462 2.63e-65 219
Msa1428380 AT5G12890.1 29.344 518 310 17 1 492 1 488 4.45e-58 200
Msa1428380 AT5G03490.1 31.161 491 285 17 9 490 19 465 6.96e-57 196
Msa1428380 AT1G22360.1 30.800 500 299 17 7 488 8 478 2.00e-55 192
Msa1428380 AT1G22380.1 32.239 518 278 19 7 492 11 487 1.29e-54 191
Msa1428380 AT1G06000.1 30.346 491 261 18 3 480 4 426 1.84e-54 189
Msa1428380 AT1G51210.1 32.282 412 244 11 7 415 18 397 1.91e-54 189
Msa1428380 AT4G34135.2 34.940 332 200 7 7 330 9 332 8.35e-54 184
Msa1428380 AT2G30150.2 29.058 499 281 17 9 490 13 455 6.51e-53 185
Msa1428380 AT1G78270.1 30.444 496 306 14 7 488 11 481 2.06e-52 185
Msa1428380 AT5G05860.1 28.893 488 293 13 8 488 8 448 2.11e-52 184
Msa1428380 AT1G22400.1 31.791 497 281 16 7 479 11 473 5.81e-52 184
Msa1428380 AT3G11340.1 28.600 493 303 12 1 490 1 447 7.27e-52 182
Msa1428380 AT2G30150.1 28.947 494 278 17 14 490 2 439 7.68e-52 182
Msa1428380 AT5G05870.1 27.935 494 310 13 11 497 10 464 3.82e-51 181
Msa1428380 AT1G22360.2 29.800 500 292 17 7 488 8 466 7.01e-51 180
Msa1428380 AT1G07250.1 31.956 363 214 9 135 489 137 474 1.04e-50 180
Msa1428380 AT1G22340.1 28.600 500 311 12 7 488 11 482 9.03e-49 175
Msa1428380 AT1G22370.2 30.261 499 298 19 7 488 11 476 7.50e-48 172
Msa1428380 AT2G29740.1 32.500 360 215 7 133 487 138 474 5.37e-47 170
Msa1428380 AT2G31750.1 29.495 495 293 16 7 489 6 456 7.69e-47 169
Msa1428380 AT3G21760.1 26.953 512 314 16 7 489 2 482 8.41e-47 169
Msa1428380 AT3G46670.1 28.778 483 289 15 11 485 11 446 8.74e-47 169
Msa1428380 AT3G16520.3 34.783 276 147 10 218 486 209 458 1.15e-46 169
Msa1428380 AT2G31750.2 29.697 495 292 17 7 489 6 456 1.78e-46 169
Msa1428380 AT5G05880.1 27.823 496 288 16 8 487 7 448 2.53e-46 167
Msa1428380 AT5G59580.1 28.081 495 300 14 1 487 1 447 3.68e-46 167
Msa1428380 AT3G21800.1 27.395 522 289 21 8 489 6 477 8.73e-46 167
Msa1428380 AT2G30140.1 29.435 496 276 21 9 487 13 451 2.21e-45 165
Msa1428380 AT2G30140.2 29.000 500 272 21 9 487 13 450 2.40e-45 165
Msa1428380 AT4G15550.1 28.715 498 305 15 6 488 12 474 3.06e-45 165
Msa1428380 AT3G50740.1 29.457 516 270 21 7 481 5 467 3.08e-45 165
Msa1428380 AT5G59590.1 28.221 489 292 16 9 487 10 449 3.79e-45 164
Msa1428380 AT3G16520.2 35.249 261 139 9 218 471 209 446 9.80e-45 163
Msa1428380 AT3G16520.1 35.547 256 135 9 218 466 209 441 1.27e-44 163
Msa1428380 AT1G05560.1 28.921 491 293 18 9 487 5 451 1.84e-44 163
Msa1428380 AT4G01070.1 27.902 491 301 13 9 482 8 462 2.22e-44 163
Msa1428380 AT4G14090.1 29.124 491 286 15 9 486 13 454 2.39e-44 162
Msa1428380 AT1G05560.2 28.921 491 293 18 9 487 55 501 2.42e-44 164
Msa1428380 AT2G29730.1 25.352 497 324 14 8 491 4 466 4.91e-44 162
Msa1428380 AT2G31790.1 28.457 499 285 19 7 484 6 453 7.22e-44 161
Msa1428380 AT3G46650.1 27.621 496 285 14 4 490 5 435 7.37e-44 160
Msa1428380 AT4G15480.1 27.984 511 304 17 8 497 18 485 2.25e-43 160
Msa1428380 AT2G43820.1 27.530 494 289 19 9 487 7 446 2.30e-43 159
Msa1428380 AT1G24100.1 29.865 519 275 20 1 489 1 460 4.87e-43 159
Msa1428380 AT5G26310.1 32.646 291 151 8 220 489 203 469 2.26e-42 157
Msa1428380 AT1G01420.2 27.869 488 292 14 9 476 11 458 2.42e-42 157
Msa1428380 AT1G01420.1 27.869 488 292 14 9 476 8 455 2.57e-42 157
Msa1428380 AT2G29710.1 24.750 501 318 15 11 492 7 467 4.41e-42 156
Msa1428380 AT4G15280.1 27.165 508 311 19 7 489 2 475 8.61e-42 155
Msa1428380 AT4G15280.2 27.165 508 311 19 7 489 34 507 1.40e-41 155
Msa1428380 AT1G07240.1 29.589 365 226 9 133 488 134 476 1.93e-41 155
Msa1428380 AT4G36770.1 27.218 496 278 16 7 470 2 446 2.12e-41 154
Msa1428380 AT3G46660.1 27.959 490 290 19 11 487 16 455 2.67e-41 154
Msa1428380 AT5G65550.1 27.706 462 283 14 1 448 1 425 3.25e-41 154
Msa1428380 AT5G66690.1 25.714 525 298 19 7 494 5 474 3.34e-41 154
Msa1428380 AT5G05900.1 27.515 487 300 13 8 487 7 447 3.80e-41 153
Msa1428380 AT4G15260.1 35.106 282 152 9 220 489 94 356 4.31e-41 151
Msa1428380 AT3G21780.1 26.488 521 293 19 7 489 2 470 6.52e-41 153
Msa1428380 AT3G55700.1 27.183 504 287 20 11 492 10 455 1.21e-40 152
Msa1428380 AT3G21790.1 25.725 517 312 18 7 489 2 480 1.45e-40 152
Msa1428380 AT2G18570.1 26.358 497 299 17 9 480 5 459 1.57e-40 152
Msa1428380 AT2G23250.1 28.423 482 280 16 18 487 7 435 1.67e-40 151
Msa1428380 AT3G46680.1 26.176 489 301 14 1 478 1 440 2.11e-40 151
Msa1428380 AT1G05530.1 27.347 490 307 17 9 488 5 455 4.02e-40 150
Msa1428380 AT3G02100.1 26.884 491 297 17 9 484 13 456 5.55e-40 150
Msa1428380 AT1G01390.1 27.570 428 260 12 9 415 8 406 9.77e-40 150
Msa1428380 AT1G01390.2 27.570 428 260 12 9 415 25 423 1.21e-39 150
Msa1428380 AT1G07260.1 30.387 362 224 9 133 488 133 472 1.37e-39 149
Msa1428380 AT1G05675.1 26.069 491 301 14 9 484 6 449 1.57e-39 149
Msa1428380 AT2G29750.1 29.834 362 223 9 133 488 138 474 1.96e-39 149
Msa1428380 AT1G05680.1 26.939 490 300 17 9 485 6 450 4.05e-38 145
Msa1428380 AT3G21560.1 28.144 501 306 21 4 487 9 472 4.57e-38 145
Msa1428380 AT3G46690.1 26.327 490 287 16 7 478 7 440 8.25e-38 144
Msa1428380 AT5G49690.1 26.834 477 275 18 8 462 9 433 9.27e-38 144
Msa1428380 AT4G15490.1 26.772 508 308 21 4 488 1 467 1.33e-37 144
Msa1428380 AT2G23260.1 28.513 491 292 16 9 487 10 453 1.42e-37 144
Msa1428380 AT2G36970.1 26.587 504 306 17 7 487 8 470 1.42e-37 144
Msa1428380 AT2G28080.1 28.884 502 280 20 14 489 23 473 3.76e-37 143
Msa1428380 AT5G05890.1 27.551 490 301 15 8 487 7 452 6.20e-37 142
Msa1428380 AT2G43840.2 26.694 487 302 19 9 487 7 446 1.03e-36 141
Msa1428380 AT2G43840.1 26.694 487 302 19 9 487 7 446 2.16e-36 140
Msa1428380 AT3G46700.1 24.895 478 300 12 7 476 7 433 2.36e-36 140
Msa1428380 AT3G55710.1 28.266 421 253 15 11 415 10 397 5.52e-36 139
Msa1428380 AT2G26480.1 26.829 492 291 17 11 488 10 446 1.11e-35 138
Msa1428380 AT3G21750.1 25.490 510 310 18 7 488 2 469 1.54e-35 138
Msa1428380 AT4G15500.1 25.099 506 314 20 6 492 8 467 1.55e-35 138
Msa1428380 AT2G18560.1 30.216 278 156 7 218 480 115 369 2.15e-35 136
Msa1428380 AT5G38010.1 27.397 511 276 19 7 487 8 453 2.23e-35 137
Msa1428380 AT2G16890.4 31.447 318 191 11 9 316 9 309 4.04e-35 134
Msa1428380 AT2G16890.1 31.447 318 191 11 9 316 9 309 4.04e-35 134
Msa1428380 AT1G64910.1 26.608 451 287 13 8 458 5 411 4.05e-34 134
Msa1428380 AT3G46720.1 26.971 482 285 16 7 478 7 431 1.89e-33 132
Msa1428380 AT5G38040.1 26.749 486 287 18 17 487 18 449 2.24e-33 132
Msa1428380 AT1G22370.1 33.088 272 160 8 220 488 54 306 2.37e-33 129
Msa1428380 AT5G17050.1 25.296 506 306 17 3 490 8 459 2.84e-33 132
Msa1428380 AT1G30530.1 25.904 498 292 19 10 490 16 453 4.87e-33 131
Msa1428380 AT5G17040.2 31.481 270 156 7 221 490 100 340 1.05e-32 127
Msa1428380 AT5G17030.1 30.258 271 160 6 220 490 217 458 1.07e-32 130
Msa1428380 AT5G17040.1 31.481 270 156 7 221 490 202 442 1.94e-32 129
Msa1428380 AT4G27570.1 26.923 416 263 12 7 416 5 385 5.36e-31 125
Msa1428380 AT3G22250.1 25.941 505 262 24 3 463 4 440 1.87e-30 124
Msa1428380 AT4G27560.1 26.506 415 266 11 7 416 5 385 4.35e-30 122
Msa1428380 AT3G29630.1 25.652 460 295 13 7 461 4 421 6.32e-29 119
Msa1428380 AT3G29630.2 25.926 459 269 16 7 461 4 395 2.06e-28 117
Msa1428380 AT5G53990.1 26.338 467 268 17 8 458 5 411 3.73e-27 114
Msa1428380 AT4G09500.1 26.350 463 271 17 4 465 1 394 2.79e-26 111
Msa1428380 AT1G64920.1 26.258 457 287 15 7 458 4 415 5.11e-26 110
Msa1428380 AT1G50580.1 25.478 471 280 16 7 461 4 419 6.46e-26 110
Msa1428380 AT4G09500.2 25.630 476 283 15 4 465 1 419 1.14e-25 109
Msa1428380 AT5G54010.1 24.619 459 294 14 7 458 4 417 1.17e-25 109
Msa1428380 AT2G22930.1 24.587 484 276 17 4 464 1 418 9.44e-24 103
Msa1428380 AT2G15490.2 34.211 190 113 6 7 188 5 190 1.12e-23 100
Msa1428380 AT5G37950.2 27.431 288 182 7 104 390 76 337 4.03e-22 97.8
Msa1428380 AT5G37950.1 27.891 294 179 9 104 390 76 343 4.67e-22 97.8
Msa1428380 AT5G54060.1 24.554 505 308 18 8 490 12 465 1.82e-21 97.4
Msa1428380 AT2G22590.1 33.333 192 116 5 272 462 265 445 2.49e-20 94.0

Find 91 sgRNAs with CRISPR-Local

Find 250 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTACATGCCATTAATATTA+TGG 0.159784 tig0026340:-32429 Msa1428380:CDS
CATGATTTCCATAATATTAA+TGG 0.176093 tig0026340:+32421 None:intergenic
TGGTAGAGGCCTAGTAATTA+AGG 0.254407 tig0026340:-31868 Msa1428380:CDS
CTAGCTATGTGGATTGTATA+TGG 0.276076 tig0026340:+32518 None:intergenic
TTGCTGCAGTAAGTTGCTTC+TGG 0.276341 tig0026340:-32469 Msa1428380:CDS
AACTTTCCATGTAAAGAGTT+TGG 0.286014 tig0026340:-32695 Msa1428380:CDS
GCTTGCTGAGATGGCTAAAA+AGG 0.306382 tig0026340:-31523 Msa1428380:CDS
ACTGCAGCAAAAGAAATTCT+TGG 0.311271 tig0026340:+32482 None:intergenic
AAGAGGAATAGAAGTGTTAA+TGG 0.319780 tig0026340:-31589 Msa1428380:CDS
ACTTAGTAACATTGATGAAT+TGG 0.326831 tig0026340:-32150 Msa1428380:CDS
ATAATACATGTTTCTTCATA+TGG 0.331814 tig0026340:+31416 None:intergenic
AACAACACAAAGTGTAGTTT+TGG 0.332964 tig0026340:+32890 None:intergenic
TCTCTAATAACCCAAATAAA+AGG 0.343882 tig0026340:+31954 None:intergenic
TCTTCCTCACCCCATTGAAT+AGG 0.368762 tig0026340:+31648 None:intergenic
AGATTAGAAATGGCAAAGTT+TGG 0.370943 tig0026340:-32190 Msa1428380:CDS
GGATATACTTGAAGCTGAAA+TGG 0.374963 tig0026340:-32279 Msa1428380:CDS
TCAAGATTCTCACACCCTTC+TGG 0.375312 tig0026340:+32668 None:intergenic
ATCCTCATTAAATTGTTTCA+AGG 0.376454 tig0026340:+32298 None:intergenic
TTGTGGTTGGAATTCTACTA+TGG 0.377974 tig0026340:-31787 Msa1428380:CDS
GTAGCACGTCATGTTGAATC+TGG 0.379621 tig0026340:-32743 Msa1428380:CDS
GAAGCTGAAATGGGTAGTTA+TGG 0.395187 tig0026340:-32269 Msa1428380:CDS
CTTTGTGTTGTTTCCAATGA+TGG 0.396641 tig0026340:-32879 Msa1428380:CDS
TTCAAGTCCCTTACATATGT+TGG 0.399868 tig0026340:+32215 None:intergenic
ATTGAGGAGAGTGGATTTGA+GGG 0.399917 tig0026340:-31900 Msa1428380:CDS
AATGGCAAAGTTTGGTGTAT+AGG 0.404786 tig0026340:-32182 Msa1428380:CDS
TAACATTGATGAATTGGATA+AGG 0.404858 tig0026340:-32144 Msa1428380:CDS
ACCCTAGTCCTGTTTGTGCT+AGG 0.406283 tig0026340:+32339 None:intergenic
GAGAATCTTGACATGCTGCC+TGG 0.426628 tig0026340:-32656 Msa1428380:CDS
ACTAGGGTCAACAAAGGTTA+TGG 0.429662 tig0026340:-32324 Msa1428380:CDS
GATGGACACTGCAAAACTAT+TGG 0.435532 tig0026340:-32834 Msa1428380:CDS
AATGTAAAGAAAGAAGAAAA+AGG 0.439210 tig0026340:-31554 Msa1428380:CDS
AAGCTGAAATGGGTAGTTAT+GGG 0.442213 tig0026340:-32268 Msa1428380:CDS
CATTAATATTATGGAAATCA+TGG 0.448368 tig0026340:-32420 Msa1428380:CDS
CCCTAGTCCTGTTTGTGCTA+GGG 0.460150 tig0026340:+32340 None:intergenic
AGTTAGAGCCAACATATGTA+AGG 0.466189 tig0026340:-32223 Msa1428380:CDS
AGGCCTAGTAATTAAGGGTT+GGG 0.471377 tig0026340:-31862 Msa1428380:CDS
TGATACATTGAAGAAGTTTG+AGG 0.472014 tig0026340:+32622 None:intergenic
TCAGAGATAATACAAGTTGC+TGG 0.475164 tig0026340:+32551 None:intergenic
ATTGAAGAAGTTTGAGGCTA+GGG 0.477454 tig0026340:+32628 None:intergenic
GGATTTGAGGGAAGAATCAA+TGG 0.478326 tig0026340:-31888 Msa1428380:CDS
TCAATGTTACTAAGTGATAC+AGG 0.479291 tig0026340:+32158 None:intergenic
GATTGAGGAGAGTGGATTTG+AGG 0.479965 tig0026340:-31901 Msa1428380:CDS
TATTGAACTTTCTAGCTATG+TGG 0.480031 tig0026340:+32507 None:intergenic
GGGTGAAGAGTCCTATTCAA+TGG 0.480613 tig0026340:-31659 Msa1428380:CDS
GTTGTGCAAATATTGAAAGT+TGG 0.483816 tig0026340:-31693 Msa1428380:CDS
GATATACTTGAAGCTGAAAT+GGG 0.488641 tig0026340:-32278 Msa1428380:CDS
GGGCCCAACCCTTAATTACT+AGG 0.488851 tig0026340:+31859 None:intergenic
GGTGAAGAGTCCTATTCAAT+GGG 0.490401 tig0026340:-31658 Msa1428380:CDS
GAAATGACCCTAGCACAAAC+AGG 0.490631 tig0026340:-32347 Msa1428380:CDS
GAAGTGGCTAAATTCTCATA+AGG 0.494972 tig0026340:-32072 Msa1428380:CDS
GGTAGAGGCCTAGTAATTAA+GGG 0.495542 tig0026340:-31867 Msa1428380:CDS
GGTAATCCAAACTCTTTACA+TGG 0.498013 tig0026340:+32689 None:intergenic
GATTAGAGAGCTTGCTGAGA+TGG 0.498071 tig0026340:-31532 Msa1428380:CDS
CATTGAAGAAGTTTGAGGCT+AGG 0.499517 tig0026340:+32627 None:intergenic
AGTAGAATTCCAACCACAAT+GGG 0.504302 tig0026340:+31791 None:intergenic
ATGTGGCCTTGTGCCATCAT+TGG 0.505701 tig0026340:+32866 None:intergenic
TTGTCACATCCTGCAATTGG+AGG 0.505886 tig0026340:-31822 Msa1428380:CDS
AGCCTTGAAACAATTTAATG+AGG 0.509352 tig0026340:-32300 Msa1428380:CDS
AAGAAAGAAGATGTTGAAAG+AGG 0.515057 tig0026340:-31606 Msa1428380:CDS
CTGGTGTACCAATGGTTACA+TGG 0.522996 tig0026340:-31752 Msa1428380:CDS
TTTGAGGCTAGGGCAAGTCC+AGG 0.535087 tig0026340:+32638 None:intergenic
TTTATTTGGGTTATTAGAGA+GGG 0.535220 tig0026340:-31951 Msa1428380:CDS
TTAGATTACATAAACTTCCA+AGG 0.537093 tig0026340:+32027 None:intergenic
CCACCACAGTTGATAGAGCT+AGG 0.542078 tig0026340:-32002 Msa1428380:CDS
AGTGTTATATATGCAAGCCT+TGG 0.542503 tig0026340:-32044 Msa1428380:CDS
ACCCTAGCACAAACAGGACT+AGG 0.553952 tig0026340:-32341 Msa1428380:CDS
GAGGCCTAGTAATTAAGGGT+TGG 0.554653 tig0026340:-31863 Msa1428380:CDS
GAGGGAAGAATCAATGGTAG+AGG 0.568339 tig0026340:-31882 Msa1428380:CDS
TGTCCATCATGGGGATCATG+TGG 0.573417 tig0026340:+32849 None:intergenic
AAAGAGTTTGGATTACCAGA+AGG 0.576750 tig0026340:-32683 Msa1428380:CDS
AAGAGTTTGGATTACCAGAA+GGG 0.580939 tig0026340:-32682 Msa1428380:CDS
AAAAGTGGCCATGTAACCAT+TGG 0.583630 tig0026340:+31744 None:intergenic
AGGCCACATGATCCCCATGA+TGG 0.587737 tig0026340:-32852 Msa1428380:CDS
GTGACAAAATCAATAACTGA+GGG 0.594967 tig0026340:+31838 None:intergenic
GAGTCCTATTCAATGGGGTG+AGG 0.601106 tig0026340:-31652 Msa1428380:CDS
ACTATGGAAGCAATATGTGC+TGG 0.603877 tig0026340:-31771 Msa1428380:CDS
CCCTAGCACAAACAGGACTA+GGG 0.604808 tig0026340:-32340 Msa1428380:CDS
TAGTAGAATTCCAACCACAA+TGG 0.612775 tig0026340:+31790 None:intergenic
GTTAGAGCCAACATATGTAA+GGG 0.620691 tig0026340:-32222 Msa1428380:CDS
CACCACAGTTGATAGAGCTA+GGG 0.621125 tig0026340:-32001 Msa1428380:CDS
CCTAGCTCTATCAACTGTGG+TGG 0.636929 tig0026340:+32002 None:intergenic
TGTGACAAAATCAATAACTG+AGG 0.652684 tig0026340:+31837 None:intergenic
ATGAATGGAAGCACTTGAAG+TGG 0.663535 tig0026340:-32088 Msa1428380:CDS
AATATGTGCTGGTGTACCAA+TGG 0.675229 tig0026340:-31760 Msa1428380:CDS
GAATTGGATAAGGTTCAAAG+AGG 0.679282 tig0026340:-32134 Msa1428380:CDS
TTGTTTCCAATGATGGCACA+AGG 0.685173 tig0026340:-32872 Msa1428380:CDS
AACCCTAGCTCTATCAACTG+TGG 0.685229 tig0026340:+31999 None:intergenic
GAGATAATACAAGTTGCTGG+TGG 0.692094 tig0026340:+32554 None:intergenic
AACAGGACTAGGGTCAACAA+AGG 0.692624 tig0026340:-32330 Msa1428380:CDS
GTGAAGAGTCCTATTCAATG+GGG 0.739095 tig0026340:-31657 Msa1428380:CDS
TGACAAAATCAATAACTGAG+GGG 0.739385 tig0026340:+31839 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTACATGCCATTAATATTA+TGG - tig0026340:31907-31926 Msa1428380:CDS 20.0%
!! CATGATTTCCATAATATTAA+TGG + tig0026340:31918-31937 None:intergenic 20.0%
!! CATTAATATTATGGAAATCA+TGG - tig0026340:31916-31935 Msa1428380:CDS 20.0%
!!! AACAAAAAGACCTTTTATTT+GGG - tig0026340:32372-32391 Msa1428380:CDS 20.0%
!! AATGTAAAGAAAGAAGAAAA+AGG - tig0026340:32782-32801 Msa1428380:CDS 20.0%
!!! TTTTTATCTTCATGATATCT+TGG + tig0026340:32885-32904 None:intergenic 20.0%
!! TTTACATGCCATTAATATTA+TGG - tig0026340:31907-31926 Msa1428380:CDS 20.0%
!! CATGATTTCCATAATATTAA+TGG + tig0026340:31918-31937 None:intergenic 20.0%
!! CATTAATATTATGGAAATCA+TGG - tig0026340:31916-31935 Msa1428380:CDS 20.0%
!!! AACAAAAAGACCTTTTATTT+GGG - tig0026340:32372-32391 Msa1428380:CDS 20.0%
!! AATGTAAAGAAAGAAGAAAA+AGG - tig0026340:32782-32801 Msa1428380:CDS 20.0%
!!! TTTTTATCTTCATGATATCT+TGG + tig0026340:32885-32904 None:intergenic 20.0%
!! ATATCTTTTCAACTTCTTGT+TGG + tig0026340:31748-31767 None:intergenic 25.0%
! ATCCTCATTAAATTGTTTCA+AGG + tig0026340:32041-32060 None:intergenic 25.0%
!! GATAATCACAAATTCTTTTG+AGG - tig0026340:32090-32109 Msa1428380:CDS 25.0%
! GACTTGAAAAAGATTAGAAA+TGG - tig0026340:32136-32155 Msa1428380:CDS 25.0%
! ACTTAGTAACATTGATGAAT+TGG - tig0026340:32186-32205 Msa1428380:CDS 25.0%
! TAACATTGATGAATTGGATA+AGG - tig0026340:32192-32211 Msa1428380:CDS 25.0%
!!! ACAAAGTTTTAGTTGATGAA+TGG - tig0026340:32233-32252 Msa1428380:CDS 25.0%
! TTAGATTACATAAACTTCCA+AGG + tig0026340:32312-32331 None:intergenic 25.0%
!! CAACAAAAAGACCTTTTATT+TGG - tig0026340:32371-32390 Msa1428380:CDS 25.0%
! TCTCTAATAACCCAAATAAA+AGG + tig0026340:32385-32404 None:intergenic 25.0%
!!! TTTTATTTGGGTTATTAGAG+AGG - tig0026340:32384-32403 Msa1428380:CDS 25.0%
!! TTTATTTGGGTTATTAGAGA+GGG - tig0026340:32385-32404 Msa1428380:CDS 25.0%
! AGTTAGAAGAGTTGAAAAAA+TGG - tig0026340:32413-32432 Msa1428380:CDS 25.0%
! AAAAATTGATCAGCAAAAAG+TGG + tig0026340:32610-32629 None:intergenic 25.0%
!!! TTGAAAGTTGGTGTAAAAAT+TGG - tig0026340:32655-32674 Msa1428380:CDS 25.0%
!!! TGAAAGTTGGTGTAAAAATT+GGG - tig0026340:32656-32675 Msa1428380:CDS 25.0%
!! ATATCTTTTCAACTTCTTGT+TGG + tig0026340:31748-31767 None:intergenic 25.0%
! ATCCTCATTAAATTGTTTCA+AGG + tig0026340:32041-32060 None:intergenic 25.0%
!! GATAATCACAAATTCTTTTG+AGG - tig0026340:32090-32109 Msa1428380:CDS 25.0%
! GACTTGAAAAAGATTAGAAA+TGG - tig0026340:32136-32155 Msa1428380:CDS 25.0%
! ACTTAGTAACATTGATGAAT+TGG - tig0026340:32186-32205 Msa1428380:CDS 25.0%
! TAACATTGATGAATTGGATA+AGG - tig0026340:32192-32211 Msa1428380:CDS 25.0%
!!! ACAAAGTTTTAGTTGATGAA+TGG - tig0026340:32233-32252 Msa1428380:CDS 25.0%
! TTAGATTACATAAACTTCCA+AGG + tig0026340:32312-32331 None:intergenic 25.0%
!! CAACAAAAAGACCTTTTATT+TGG - tig0026340:32371-32390 Msa1428380:CDS 25.0%
! TCTCTAATAACCCAAATAAA+AGG + tig0026340:32385-32404 None:intergenic 25.0%
!!! TTTTATTTGGGTTATTAGAG+AGG - tig0026340:32384-32403 Msa1428380:CDS 25.0%
!! TTTATTTGGGTTATTAGAGA+GGG - tig0026340:32385-32404 Msa1428380:CDS 25.0%
! AGTTAGAAGAGTTGAAAAAA+TGG - tig0026340:32413-32432 Msa1428380:CDS 25.0%
! AAAAATTGATCAGCAAAAAG+TGG + tig0026340:32610-32629 None:intergenic 25.0%
!!! TTGAAAGTTGGTGTAAAAAT+TGG - tig0026340:32655-32674 Msa1428380:CDS 25.0%
!!! TGAAAGTTGGTGTAAAAATT+GGG - tig0026340:32656-32675 Msa1428380:CDS 25.0%
!!! AAAGTGTAGTTTTGGATCTA+GGG + tig0026340:31441-31460 None:intergenic 30.0%
! AACAACACAAAGTGTAGTTT+TGG + tig0026340:31449-31468 None:intergenic 30.0%
!!! TGAACCTAGATGCATTTTTT+GGG + tig0026340:31565-31584 None:intergenic 30.0%
AACTTTCCATGTAAAGAGTT+TGG - tig0026340:31641-31660 Msa1428380:CDS 30.0%
TGATACATTGAAGAAGTTTG+AGG + tig0026340:31717-31736 None:intergenic 30.0%
!! TATTGAACTTTCTAGCTATG+TGG + tig0026340:31832-31851 None:intergenic 30.0%
AGCCTTGAAACAATTTAATG+AGG - tig0026340:32036-32055 Msa1428380:CDS 30.0%
GATATACTTGAAGCTGAAAT+GGG - tig0026340:32058-32077 Msa1428380:CDS 30.0%
AGATTAGAAATGGCAAAGTT+TGG - tig0026340:32146-32165 Msa1428380:CDS 30.0%
TCAATGTTACTAAGTGATAC+AGG + tig0026340:32181-32200 None:intergenic 30.0%
!! AGAGTTGAAAAAATGGATTG+AGG - tig0026340:32420-32439 Msa1428380:CDS 30.0%
TGACAAAATCAATAACTGAG+GGG + tig0026340:32500-32519 None:intergenic 30.0%
GTGACAAAATCAATAACTGA+GGG + tig0026340:32501-32520 None:intergenic 30.0%
TGTGACAAAATCAATAACTG+AGG + tig0026340:32502-32521 None:intergenic 30.0%
GTTGTGCAAATATTGAAAGT+TGG - tig0026340:32643-32662 Msa1428380:CDS 30.0%
!! GAAAGTTGGTGTAAAAATTG+GGG - tig0026340:32657-32676 Msa1428380:CDS 30.0%
AAGAAAGAAGATGTTGAAAG+AGG - tig0026340:32730-32749 Msa1428380:CDS 30.0%
!! AAGAGGAATAGAAGTGTTAA+TGG - tig0026340:32747-32766 Msa1428380:CDS 30.0%
!!! AAAGTGTAGTTTTGGATCTA+GGG + tig0026340:31441-31460 None:intergenic 30.0%
! AACAACACAAAGTGTAGTTT+TGG + tig0026340:31449-31468 None:intergenic 30.0%
!!! TGAACCTAGATGCATTTTTT+GGG + tig0026340:31565-31584 None:intergenic 30.0%
AACTTTCCATGTAAAGAGTT+TGG - tig0026340:31641-31660 Msa1428380:CDS 30.0%
TGATACATTGAAGAAGTTTG+AGG + tig0026340:31717-31736 None:intergenic 30.0%
!! TATTGAACTTTCTAGCTATG+TGG + tig0026340:31832-31851 None:intergenic 30.0%
AGCCTTGAAACAATTTAATG+AGG - tig0026340:32036-32055 Msa1428380:CDS 30.0%
GATATACTTGAAGCTGAAAT+GGG - tig0026340:32058-32077 Msa1428380:CDS 30.0%
AGATTAGAAATGGCAAAGTT+TGG - tig0026340:32146-32165 Msa1428380:CDS 30.0%
TCAATGTTACTAAGTGATAC+AGG + tig0026340:32181-32200 None:intergenic 30.0%
!! AGAGTTGAAAAAATGGATTG+AGG - tig0026340:32420-32439 Msa1428380:CDS 30.0%
TGACAAAATCAATAACTGAG+GGG + tig0026340:32500-32519 None:intergenic 30.0%
GTGACAAAATCAATAACTGA+GGG + tig0026340:32501-32520 None:intergenic 30.0%
TGTGACAAAATCAATAACTG+AGG + tig0026340:32502-32521 None:intergenic 30.0%
GTTGTGCAAATATTGAAAGT+TGG - tig0026340:32643-32662 Msa1428380:CDS 30.0%
!! GAAAGTTGGTGTAAAAATTG+GGG - tig0026340:32657-32676 Msa1428380:CDS 30.0%
AAGAAAGAAGATGTTGAAAG+AGG - tig0026340:32730-32749 Msa1428380:CDS 30.0%
!! AAGAGGAATAGAAGTGTTAA+TGG - tig0026340:32747-32766 Msa1428380:CDS 30.0%
!!! CAAAGTGTAGTTTTGGATCT+AGG + tig0026340:31442-31461 None:intergenic 35.0%
!! CTTTGTGTTGTTTCCAATGA+TGG - tig0026340:31457-31476 Msa1428380:CDS 35.0%
!!! GAACCTAGATGCATTTTTTG+GGG + tig0026340:31564-31583 None:intergenic 35.0%
!!! GTGAACCTAGATGCATTTTT+TGG + tig0026340:31566-31585 None:intergenic 35.0%
GGTAATCCAAACTCTTTACA+TGG + tig0026340:31650-31669 None:intergenic 35.0%
AAAGAGTTTGGATTACCAGA+AGG - tig0026340:31653-31672 Msa1428380:CDS 35.0%
AAGAGTTTGGATTACCAGAA+GGG - tig0026340:31654-31673 Msa1428380:CDS 35.0%
! ATTGAAGAAGTTTGAGGCTA+GGG + tig0026340:31711-31730 None:intergenic 35.0%
TCAGAGATAATACAAGTTGC+TGG + tig0026340:31788-31807 None:intergenic 35.0%
! CTAGCTATGTGGATTGTATA+TGG + tig0026340:31821-31840 None:intergenic 35.0%
ACTGCAGCAAAAGAAATTCT+TGG + tig0026340:31857-31876 None:intergenic 35.0%
! TCAATTTTGTCAGGGATATC+AGG + tig0026340:31971-31990 None:intergenic 35.0%
! GGGTCATTTCAATTTTGTCA+GGG + tig0026340:31979-31998 None:intergenic 35.0%
! AGGGTCATTTCAATTTTGTC+AGG + tig0026340:31980-31999 None:intergenic 35.0%
GGATATACTTGAAGCTGAAA+TGG - tig0026340:32057-32076 Msa1428380:CDS 35.0%
AAGCTGAAATGGGTAGTTAT+GGG - tig0026340:32068-32087 Msa1428380:CDS 35.0%
AGTTAGAGCCAACATATGTA+AGG - tig0026340:32113-32132 Msa1428380:CDS 35.0%
GTTAGAGCCAACATATGTAA+GGG - tig0026340:32114-32133 Msa1428380:CDS 35.0%
TTCAAGTCCCTTACATATGT+TGG + tig0026340:32124-32143 None:intergenic 35.0%
!! AATGGCAAAGTTTGGTGTAT+AGG - tig0026340:32154-32173 Msa1428380:CDS 35.0%
GAATTGGATAAGGTTCAAAG+AGG - tig0026340:32202-32221 Msa1428380:CDS 35.0%
GAAGTGGCTAAATTCTCATA+AGG - tig0026340:32264-32283 Msa1428380:CDS 35.0%
AGTGTTATATATGCAAGCCT+TGG - tig0026340:32292-32311 Msa1428380:CDS 35.0%
!! AAAAAATGGATTGAGGAGAG+TGG - tig0026340:32427-32446 Msa1428380:CDS 35.0%
! ATTTTGTCACATCCTGCAAT+TGG - tig0026340:32511-32530 Msa1428380:CDS 35.0%
AGTAGAATTCCAACCACAAT+GGG + tig0026340:32548-32567 None:intergenic 35.0%
TAGTAGAATTCCAACCACAA+TGG + tig0026340:32549-32568 None:intergenic 35.0%
TTGTGGTTGGAATTCTACTA+TGG - tig0026340:32549-32568 Msa1428380:CDS 35.0%
GCTAAAAAGGCTGTAGAAAA+AGG - tig0026340:32826-32845 Msa1428380:CDS 35.0%
AAAAAGGCTGTAGAAAAAGG+TGG - tig0026340:32829-32848 Msa1428380:CDS 35.0%
!!! CAAAGTGTAGTTTTGGATCT+AGG + tig0026340:31442-31461 None:intergenic 35.0%
!! CTTTGTGTTGTTTCCAATGA+TGG - tig0026340:31457-31476 Msa1428380:CDS 35.0%
!!! GAACCTAGATGCATTTTTTG+GGG + tig0026340:31564-31583 None:intergenic 35.0%
!!! GTGAACCTAGATGCATTTTT+TGG + tig0026340:31566-31585 None:intergenic 35.0%
GGTAATCCAAACTCTTTACA+TGG + tig0026340:31650-31669 None:intergenic 35.0%
AAAGAGTTTGGATTACCAGA+AGG - tig0026340:31653-31672 Msa1428380:CDS 35.0%
AAGAGTTTGGATTACCAGAA+GGG - tig0026340:31654-31673 Msa1428380:CDS 35.0%
! ATTGAAGAAGTTTGAGGCTA+GGG + tig0026340:31711-31730 None:intergenic 35.0%
TCAGAGATAATACAAGTTGC+TGG + tig0026340:31788-31807 None:intergenic 35.0%
! CTAGCTATGTGGATTGTATA+TGG + tig0026340:31821-31840 None:intergenic 35.0%
ACTGCAGCAAAAGAAATTCT+TGG + tig0026340:31857-31876 None:intergenic 35.0%
! TCAATTTTGTCAGGGATATC+AGG + tig0026340:31971-31990 None:intergenic 35.0%
! GGGTCATTTCAATTTTGTCA+GGG + tig0026340:31979-31998 None:intergenic 35.0%
! AGGGTCATTTCAATTTTGTC+AGG + tig0026340:31980-31999 None:intergenic 35.0%
GGATATACTTGAAGCTGAAA+TGG - tig0026340:32057-32076 Msa1428380:CDS 35.0%
AAGCTGAAATGGGTAGTTAT+GGG - tig0026340:32068-32087 Msa1428380:CDS 35.0%
AGTTAGAGCCAACATATGTA+AGG - tig0026340:32113-32132 Msa1428380:CDS 35.0%
GTTAGAGCCAACATATGTAA+GGG - tig0026340:32114-32133 Msa1428380:CDS 35.0%
TTCAAGTCCCTTACATATGT+TGG + tig0026340:32124-32143 None:intergenic 35.0%
!! AATGGCAAAGTTTGGTGTAT+AGG - tig0026340:32154-32173 Msa1428380:CDS 35.0%
GAATTGGATAAGGTTCAAAG+AGG - tig0026340:32202-32221 Msa1428380:CDS 35.0%
GAAGTGGCTAAATTCTCATA+AGG - tig0026340:32264-32283 Msa1428380:CDS 35.0%
AGTGTTATATATGCAAGCCT+TGG - tig0026340:32292-32311 Msa1428380:CDS 35.0%
!! AAAAAATGGATTGAGGAGAG+TGG - tig0026340:32427-32446 Msa1428380:CDS 35.0%
! ATTTTGTCACATCCTGCAAT+TGG - tig0026340:32511-32530 Msa1428380:CDS 35.0%
AGTAGAATTCCAACCACAAT+GGG + tig0026340:32548-32567 None:intergenic 35.0%
TAGTAGAATTCCAACCACAA+TGG + tig0026340:32549-32568 None:intergenic 35.0%
TTGTGGTTGGAATTCTACTA+TGG - tig0026340:32549-32568 Msa1428380:CDS 35.0%
GCTAAAAAGGCTGTAGAAAA+AGG - tig0026340:32826-32845 Msa1428380:CDS 35.0%
AAAAAGGCTGTAGAAAAAGG+TGG - tig0026340:32829-32848 Msa1428380:CDS 35.0%
TTGTTTCCAATGATGGCACA+AGG - tig0026340:31464-31483 Msa1428380:CDS 40.0%
! AGTTTTGCAGTGTCCATCAT+GGG + tig0026340:31500-31519 None:intergenic 40.0%
!! TAGTTTTGCAGTGTCCATCA+TGG + tig0026340:31501-31520 None:intergenic 40.0%
GATGGACACTGCAAAACTAT+TGG - tig0026340:31502-31521 Msa1428380:CDS 40.0%
CAACCCCAAAAAATGCATCT+AGG - tig0026340:31558-31577 Msa1428380:CDS 40.0%
! CATTGAAGAAGTTTGAGGCT+AGG + tig0026340:31712-31731 None:intergenic 40.0%
GAGATAATACAAGTTGCTGG+TGG + tig0026340:31785-31804 None:intergenic 40.0%
ACTAGGGTCAACAAAGGTTA+TGG - tig0026340:32012-32031 Msa1428380:CDS 40.0%
GAAGCTGAAATGGGTAGTTA+TGG - tig0026340:32067-32086 Msa1428380:CDS 40.0%
!! ATGAATGGAAGCACTTGAAG+TGG - tig0026340:32248-32267 Msa1428380:CDS 40.0%
! ATTGAGGAGAGTGGATTTGA+GGG - tig0026340:32436-32455 Msa1428380:CDS 40.0%
GGATTTGAGGGAAGAATCAA+TGG - tig0026340:32448-32467 Msa1428380:CDS 40.0%
TGGTAGAGGCCTAGTAATTA+AGG - tig0026340:32468-32487 Msa1428380:CDS 40.0%
GGTAGAGGCCTAGTAATTAA+GGG - tig0026340:32469-32488 Msa1428380:CDS 40.0%
AGGCCTAGTAATTAAGGGTT+GGG - tig0026340:32474-32493 Msa1428380:CDS 40.0%
GTCAAAAATCCTCCAATTGC+AGG + tig0026340:32526-32545 None:intergenic 40.0%
! GATTTTTGACCCATTGTGGT+TGG - tig0026340:32536-32555 Msa1428380:CDS 40.0%
ACTATGGAAGCAATATGTGC+TGG - tig0026340:32565-32584 Msa1428380:CDS 40.0%
! AATATGTGCTGGTGTACCAA+TGG - tig0026340:32576-32595 Msa1428380:CDS 40.0%
AAAAGTGGCCATGTAACCAT+TGG + tig0026340:32595-32614 None:intergenic 40.0%
GGTGAAGAGTCCTATTCAAT+GGG - tig0026340:32678-32697 Msa1428380:CDS 40.0%
GTGAAGAGTCCTATTCAATG+GGG - tig0026340:32679-32698 Msa1428380:CDS 40.0%
GGAAGAAAAAAGTGGTGTGT+TGG - tig0026340:32705-32724 Msa1428380:CDS 40.0%
TTGTTTCCAATGATGGCACA+AGG - tig0026340:31464-31483 Msa1428380:CDS 40.0%
! AGTTTTGCAGTGTCCATCAT+GGG + tig0026340:31500-31519 None:intergenic 40.0%
!! TAGTTTTGCAGTGTCCATCA+TGG + tig0026340:31501-31520 None:intergenic 40.0%
GATGGACACTGCAAAACTAT+TGG - tig0026340:31502-31521 Msa1428380:CDS 40.0%
CAACCCCAAAAAATGCATCT+AGG - tig0026340:31558-31577 Msa1428380:CDS 40.0%
! CATTGAAGAAGTTTGAGGCT+AGG + tig0026340:31712-31731 None:intergenic 40.0%
GAGATAATACAAGTTGCTGG+TGG + tig0026340:31785-31804 None:intergenic 40.0%
ACTAGGGTCAACAAAGGTTA+TGG - tig0026340:32012-32031 Msa1428380:CDS 40.0%
GAAGCTGAAATGGGTAGTTA+TGG - tig0026340:32067-32086 Msa1428380:CDS 40.0%
!! ATGAATGGAAGCACTTGAAG+TGG - tig0026340:32248-32267 Msa1428380:CDS 40.0%
! ATTGAGGAGAGTGGATTTGA+GGG - tig0026340:32436-32455 Msa1428380:CDS 40.0%
GGATTTGAGGGAAGAATCAA+TGG - tig0026340:32448-32467 Msa1428380:CDS 40.0%
TGGTAGAGGCCTAGTAATTA+AGG - tig0026340:32468-32487 Msa1428380:CDS 40.0%
GGTAGAGGCCTAGTAATTAA+GGG - tig0026340:32469-32488 Msa1428380:CDS 40.0%
AGGCCTAGTAATTAAGGGTT+GGG - tig0026340:32474-32493 Msa1428380:CDS 40.0%
GTCAAAAATCCTCCAATTGC+AGG + tig0026340:32526-32545 None:intergenic 40.0%
! GATTTTTGACCCATTGTGGT+TGG - tig0026340:32536-32555 Msa1428380:CDS 40.0%
ACTATGGAAGCAATATGTGC+TGG - tig0026340:32565-32584 Msa1428380:CDS 40.0%
! AATATGTGCTGGTGTACCAA+TGG - tig0026340:32576-32595 Msa1428380:CDS 40.0%
AAAAGTGGCCATGTAACCAT+TGG + tig0026340:32595-32614 None:intergenic 40.0%
GGTGAAGAGTCCTATTCAAT+GGG - tig0026340:32678-32697 Msa1428380:CDS 40.0%
GTGAAGAGTCCTATTCAATG+GGG - tig0026340:32679-32698 Msa1428380:CDS 40.0%
GGAAGAAAAAAGTGGTGTGT+TGG - tig0026340:32705-32724 Msa1428380:CDS 40.0%
! GTTTTGCAGTGTCCATCATG+GGG + tig0026340:31499-31518 None:intergenic 45.0%
GTAGCACGTCATGTTGAATC+TGG - tig0026340:31593-31612 Msa1428380:CDS 45.0%
TCAAGATTCTCACACCCTTC+TGG + tig0026340:31671-31690 None:intergenic 45.0%
TTGCTGCAGTAAGTTGCTTC+TGG - tig0026340:31867-31886 Msa1428380:CDS 45.0%
GAAATGACCCTAGCACAAAC+AGG - tig0026340:31989-32008 Msa1428380:CDS 45.0%
AACAGGACTAGGGTCAACAA+AGG - tig0026340:32006-32025 Msa1428380:CDS 45.0%
!! CACCACAGTTGATAGAGCTA+GGG - tig0026340:32335-32354 Msa1428380:CDS 45.0%
!! AACCCTAGCTCTATCAACTG+TGG + tig0026340:32340-32359 None:intergenic 45.0%
! GATTGAGGAGAGTGGATTTG+AGG - tig0026340:32435-32454 Msa1428380:CDS 45.0%
GAGGGAAGAATCAATGGTAG+AGG - tig0026340:32454-32473 Msa1428380:CDS 45.0%
GAGGCCTAGTAATTAAGGGT+TGG - tig0026340:32473-32492 Msa1428380:CDS 45.0%
TTGTCACATCCTGCAATTGG+AGG - tig0026340:32514-32533 Msa1428380:CDS 45.0%
! GGAGGATTTTTGACCCATTG+TGG - tig0026340:32532-32551 Msa1428380:CDS 45.0%
CTGGTGTACCAATGGTTACA+TGG - tig0026340:32584-32603 Msa1428380:CDS 45.0%
GGGTGAAGAGTCCTATTCAA+TGG - tig0026340:32677-32696 Msa1428380:CDS 45.0%
TCTTCCTCACCCCATTGAAT+AGG + tig0026340:32691-32710 None:intergenic 45.0%
TGGGGTGAGGAAGAAAAAAG+TGG - tig0026340:32697-32716 Msa1428380:CDS 45.0%
!! GATTAGAGAGCTTGCTGAGA+TGG - tig0026340:32804-32823 Msa1428380:CDS 45.0%
! GCTTGCTGAGATGGCTAAAA+AGG - tig0026340:32813-32832 Msa1428380:CDS 45.0%
! GTTTTGCAGTGTCCATCATG+GGG + tig0026340:31499-31518 None:intergenic 45.0%
GTAGCACGTCATGTTGAATC+TGG - tig0026340:31593-31612 Msa1428380:CDS 45.0%
TCAAGATTCTCACACCCTTC+TGG + tig0026340:31671-31690 None:intergenic 45.0%
TTGCTGCAGTAAGTTGCTTC+TGG - tig0026340:31867-31886 Msa1428380:CDS 45.0%
GAAATGACCCTAGCACAAAC+AGG - tig0026340:31989-32008 Msa1428380:CDS 45.0%
AACAGGACTAGGGTCAACAA+AGG - tig0026340:32006-32025 Msa1428380:CDS 45.0%
!! CACCACAGTTGATAGAGCTA+GGG - tig0026340:32335-32354 Msa1428380:CDS 45.0%
!! AACCCTAGCTCTATCAACTG+TGG + tig0026340:32340-32359 None:intergenic 45.0%
! GATTGAGGAGAGTGGATTTG+AGG - tig0026340:32435-32454 Msa1428380:CDS 45.0%
GAGGGAAGAATCAATGGTAG+AGG - tig0026340:32454-32473 Msa1428380:CDS 45.0%
GAGGCCTAGTAATTAAGGGT+TGG - tig0026340:32473-32492 Msa1428380:CDS 45.0%
TTGTCACATCCTGCAATTGG+AGG - tig0026340:32514-32533 Msa1428380:CDS 45.0%
! GGAGGATTTTTGACCCATTG+TGG - tig0026340:32532-32551 Msa1428380:CDS 45.0%
CTGGTGTACCAATGGTTACA+TGG - tig0026340:32584-32603 Msa1428380:CDS 45.0%
GGGTGAAGAGTCCTATTCAA+TGG - tig0026340:32677-32696 Msa1428380:CDS 45.0%
TCTTCCTCACCCCATTGAAT+AGG + tig0026340:32691-32710 None:intergenic 45.0%
TGGGGTGAGGAAGAAAAAAG+TGG - tig0026340:32697-32716 Msa1428380:CDS 45.0%
!! GATTAGAGAGCTTGCTGAGA+TGG - tig0026340:32804-32823 Msa1428380:CDS 45.0%
! GCTTGCTGAGATGGCTAAAA+AGG - tig0026340:32813-32832 Msa1428380:CDS 45.0%
!! ATGTGGCCTTGTGCCATCAT+TGG + tig0026340:31473-31492 None:intergenic 50.0%
TGTCCATCATGGGGATCATG+TGG + tig0026340:31490-31509 None:intergenic 50.0%
GAGAATCTTGACATGCTGCC+TGG - tig0026340:31680-31699 Msa1428380:CDS 50.0%
ACCCTAGCACAAACAGGACT+AGG - tig0026340:31995-32014 Msa1428380:CDS 50.0%
CCCTAGTCCTGTTTGTGCTA+GGG + tig0026340:31999-32018 None:intergenic 50.0%
CCCTAGCACAAACAGGACTA+GGG - tig0026340:31996-32015 Msa1428380:CDS 50.0%
ACCCTAGTCCTGTTTGTGCT+AGG + tig0026340:32000-32019 None:intergenic 50.0%
!! CCTAGCTCTATCAACTGTGG+TGG + tig0026340:32337-32356 None:intergenic 50.0%
!! CCACCACAGTTGATAGAGCT+AGG - tig0026340:32334-32353 Msa1428380:CDS 50.0%
GGGCCCAACCCTTAATTACT+AGG + tig0026340:32480-32499 None:intergenic 50.0%
GAGTCCTATTCAATGGGGTG+AGG - tig0026340:32684-32703 Msa1428380:CDS 50.0%
!! ATGTGGCCTTGTGCCATCAT+TGG + tig0026340:31473-31492 None:intergenic 50.0%
TGTCCATCATGGGGATCATG+TGG + tig0026340:31490-31509 None:intergenic 50.0%
GAGAATCTTGACATGCTGCC+TGG - tig0026340:31680-31699 Msa1428380:CDS 50.0%
ACCCTAGCACAAACAGGACT+AGG - tig0026340:31995-32014 Msa1428380:CDS 50.0%
CCCTAGTCCTGTTTGTGCTA+GGG + tig0026340:31999-32018 None:intergenic 50.0%
CCCTAGCACAAACAGGACTA+GGG - tig0026340:31996-32015 Msa1428380:CDS 50.0%
ACCCTAGTCCTGTTTGTGCT+AGG + tig0026340:32000-32019 None:intergenic 50.0%
!! CCTAGCTCTATCAACTGTGG+TGG + tig0026340:32337-32356 None:intergenic 50.0%
!! CCACCACAGTTGATAGAGCT+AGG - tig0026340:32334-32353 Msa1428380:CDS 50.0%
GGGCCCAACCCTTAATTACT+AGG + tig0026340:32480-32499 None:intergenic 50.0%
GAGTCCTATTCAATGGGGTG+AGG - tig0026340:32684-32703 Msa1428380:CDS 50.0%
AGGCCACATGATCCCCATGA+TGG - tig0026340:31484-31503 Msa1428380:CDS 55.0%
! TTTGAGGCTAGGGCAAGTCC+AGG + tig0026340:31701-31720 None:intergenic 55.0%
AGGCCACATGATCCCCATGA+TGG - tig0026340:31484-31503 Msa1428380:CDS 55.0%
! TTTGAGGCTAGGGCAAGTCC+AGG + tig0026340:31701-31720 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
tig0026340 gene 31431 32927 31431 ID=Msa1428380;Name=Msa1428380
tig0026340 mRNA 31431 32927 31431 ID=Msa1428380-mRNA-1;Parent=Msa1428380;Name=Msa1428380-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|498
tig0026340 exon 31431 32927 31431 ID=Msa1428380-mRNA-1:exon:5945;Parent=Msa1428380-mRNA-1
tig0026340 CDS 31431 32927 31431 ID=Msa1428380-mRNA-1:cds;Parent=Msa1428380-mRNA-1
Gene Sequence

>Msa1428380

ATGGCAACCCTAGATCCAAAACTACACTTTGTGTTGTTTCCAATGATGGCACAAGGCCACATGATCCCCATGATGGACACTGCAAAACTATTGGCACATCATGAAAATGTTGTAGTTACAATAGTAACAACCCCAAAAAATGCATCTAGGTTCACATCATTTGTAGCACGTCATGTTGAATCTGGTCTTCACATTCAATTCATCAAACTCAACTTTCCATGTAAAGAGTTTGGATTACCAGAAGGGTGTGAGAATCTTGACATGCTGCCTGGACTTGCCCTAGCCTCAAACTTCTTCAATGTATCAAAACTTCTCCAACAAGAAGTTGAAAAGATATTTGAAGAGTTAACACCACCAGCAACTTGTATTATCTCTGATACGATTTTGCCATATACAATCCACATAGCTAGAAAGTTCAATATTCCAAGAATTTCTTTTGCTGCAGTAAGTTGCTTCTGGCTCTACAATATACATAATTTACATGCCATTAATATTATGGAAATCATGGCTAATAAAGAATCTGAATACTTTGATTTGCCTGATATCCCTGACAAAATTGAAATGACCCTAGCACAAACAGGACTAGGGTCAACAAAGGTTATGGAAGCCTTGAAACAATTTAATGAGGATATACTTGAAGCTGAAATGGGTAGTTATGGGATAATCACAAATTCTTTTGAGGAGTTAGAGCCAACATATGTAAGGGACTTGAAAAAGATTAGAAATGGCAAAGTTTGGTGTATAGGACCTGTATCACTTAGTAACATTGATGAATTGGATAAGGTTCAAAGAGGTAATAGTAACAAAGTTTTAGTTGATGAATGGAAGCACTTGAAGTGGCTAAATTCTCATAAGGATGAGAGTGTTATATATGCAAGCCTTGGAAGTTTATGTAATCTAACACCACCACAGTTGATAGAGCTAGGGTTAGCATTAGAAGCAACAAAAAGACCTTTTATTTGGGTTATTAGAGAGGGAAATCAGTTAGAAGAGTTGAAAAAATGGATTGAGGAGAGTGGATTTGAGGGAAGAATCAATGGTAGAGGCCTAGTAATTAAGGGTTGGGCCCCTCAGTTATTGATTTTGTCACATCCTGCAATTGGAGGATTTTTGACCCATTGTGGTTGGAATTCTACTATGGAAGCAATATGTGCTGGTGTACCAATGGTTACATGGCCACTTTTTGCTGATCAATTTTTTAATGAATGTTTAGTTGTGCAAATATTGAAAGTTGGTGTAAAAATTGGGGTGAAGAGTCCTATTCAATGGGGTGAGGAAGAAAAAAGTGGTGTGTTGGTGAAGAAAGAAGATGTTGAAAGAGGAATAGAAGTGTTAATGGATGAGACAGATGAATGTAAAGAAAGAAGAAAAAGGATTAGAGAGCTTGCTGAGATGGCTAAAAAGGCTGTAGAAAAAGGTGGATCTTCTCACTCTAATGTTGCTTTGTTCATCCAAGATATCATGAAGATAAAAAATAAAGTTACAAAAACCATATGA

Protein sequence

>Msa1428380

MATLDPKLHFVLFPMMAQGHMIPMMDTAKLLAHHENVVVTIVTTPKNASRFTSFVARHVESGLHIQFIKLNFPCKEFGLPEGCENLDMLPGLALASNFFNVSKLLQQEVEKIFEELTPPATCIISDTILPYTIHIARKFNIPRISFAAVSCFWLYNIHNLHAINIMEIMANKESEYFDLPDIPDKIEMTLAQTGLGSTKVMEALKQFNEDILEAEMGSYGIITNSFEELEPTYVRDLKKIRNGKVWCIGPVSLSNIDELDKVQRGNSNKVLVDEWKHLKWLNSHKDESVIYASLGSLCNLTPPQLIELGLALEATKRPFIWVIREGNQLEELKKWIEESGFEGRINGRGLVIKGWAPQLLILSHPAIGGFLTHCGWNSTMEAICAGVPMVTWPLFADQFFNECLVVQILKVGVKIGVKSPIQWGEEEKSGVLVKKEDVERGIEVLMDETDECKERRKRIRELAEMAKKAVEKGGSSHSNVALFIQDIMKIKNKVTKTI*