AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1131940


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1131940 MtrunA17_Chr7g0235941 100.000 215 0 0 1 215 1 215 1.50e-159 439
Msa1131940 MtrunA17_Chr8g0379591 72.558 215 59 0 1 215 1 215 6.80e-111 316
Msa1131940 MtrunA17_Chr4g0038571 34.061 229 130 8 2 215 47 269 6.54e-33 119
Msa1131940 MtrunA17_Chr3g0142691 34.498 229 129 8 2 215 47 269 3.39e-32 117
Msa1131940 MtrunA17_Chr8g0339351 33.480 227 128 5 2 211 47 267 4.19e-27 104
Msa1131940 MtrunA17_Chr8g0339421 35.714 196 110 4 30 212 65 257 2.20e-23 94.4
Msa1131940 MtrunA17_Chr8g0339401 32.911 158 89 6 60 203 6 160 1.03e-17 77.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1131940 AT3G25040.1 87.442 215 27 0 1 215 1 215 1.12e-141 394
Msa1131940 AT1G29330.1 72.558 215 59 0 1 215 1 215 1.39e-117 333
Msa1131940 AT1G29330.2 70.588 153 45 0 63 215 1 153 4.40e-79 234
Msa1131940 AT4G38790.1 35.088 228 129 8 2 215 48 270 5.09e-33 120
Msa1131940 AT1G19970.1 35.683 227 129 7 2 215 47 269 5.48e-33 120
Msa1131940 AT1G75760.1 34.061 229 130 8 2 215 47 269 4.63e-32 117
Msa1131940 AT3G25160.1 33.784 222 129 6 2 209 48 265 6.36e-32 117
Msa1131940 AT2G21190.1 33.188 229 132 8 2 215 44 266 4.66e-31 115
Msa1131940 AT1G75760.2 33.796 216 123 7 2 203 47 256 2.60e-30 112
Msa1131940 AT1G19970.2 36.257 171 102 4 2 169 47 213 2.46e-27 104
Msa1131940 AT1G75760.3 34.104 173 103 5 2 169 47 213 2.18e-26 102

Find 66 sgRNAs with CRISPR-Local

Find 364 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAATGAGAAATTCACATTTA+AGG 0.174751 7_3:+84740378 Msa1131940:CDS
ACCAAACACGGTTTAAAATA+AGG 0.204711 7_3:-84742094 None:intergenic
TGTTATGAAGTTGATATTCT+TGG 0.275463 7_3:+84740228 Msa1131940:CDS
GGACAATATGTCTTTCTTCT+TGG 0.280895 7_3:+84740632 Msa1131940:CDS
AGTATTGCCCTGCTTATTGT+TGG 0.324545 7_3:+84740345 Msa1131940:CDS
TGTGATGGAATATTCTAAAC+AGG 0.333538 7_3:+84742044 Msa1131940:three_prime_UTR
TCCAACACATTCCACTTCTA+TGG 0.336732 7_3:+84742004 Msa1131940:three_prime_UTR
AGAAACATTGACAATTTAAC+AGG 0.337581 7_3:+84740611 Msa1131940:CDS
GACAATATGTCTTTCTTCTT+GGG 0.345288 7_3:+84740633 Msa1131940:CDS
GAGCACTATACATTCTCAAC+TGG 0.354642 7_3:+84741371 Msa1131940:CDS
TGATCATTATTAGACAATAA+AGG 0.367335 7_3:-84742168 None:intergenic
AGTTAGAGAAAGTCGATTTG+AGG 0.391350 7_3:+84742137 Msa1131940:three_prime_UTR
GGAATATTCTAAACAGGGAT+TGG 0.398604 7_3:+84742050 Msa1131940:three_prime_UTR
TGAATTTCTCATTGATAAGT+AGG 0.405613 7_3:-84740369 None:intergenic
CAGTACCAGTTGAGGAAGTA+TGG 0.407791 7_3:-84740576 None:intergenic
TGGCAACAGCTTCCAAATAC+AGG 0.408291 7_3:-84740556 None:intergenic
CCAAACACGGTTTAAAATAA+GGG 0.414519 7_3:-84742093 None:intergenic
GAACGAGGACACTGGCCAAA+TGG 0.420498 7_3:-84736267 None:intergenic
GTTATGAAGTTGATATTCTT+GGG 0.424245 7_3:+84740229 Msa1131940:CDS
GATACCAGCGCAGGATTTGA+TGG 0.424641 7_3:-84736308 None:intergenic
AGCTGGTGATATGACCCATT+TGG 0.445184 7_3:+84736252 Msa1131940:CDS
TTCTTCGCTTTGATTAGATC+TGG 0.445613 7_3:-84736206 None:intergenic
TGTTGCCATACTTCCTCAAC+TGG 0.450840 7_3:+84740571 Msa1131940:CDS
CCGAGCCCCACTTTGTCCAT+TGG 0.453725 7_3:+84741410 Msa1131940:CDS
GAATATTCTAAACAGGGATT+GGG 0.465825 7_3:+84742051 Msa1131940:three_prime_UTR
ACGATTTCGATTCTTGCAAT+CGG 0.473043 7_3:+84736171 Msa1131940:five_prime_UTR
ACCATAGAAGTGGAATGTGT+TGG 0.473931 7_3:-84742005 None:intergenic
AACGAGGACACTGGCCAAAT+GGG 0.475671 7_3:-84736266 None:intergenic
TACTTTCTTTACCATAGAAG+TGG 0.486296 7_3:-84742015 None:intergenic
ATGCTGGCAAATGAAGCTTC+TGG 0.490077 7_3:-84741735 None:intergenic
AAGTAGGGCCAACAATAAGC+AGG 0.512666 7_3:-84740353 None:intergenic
TAGATCATATGACAAAGATC+AGG 0.514146 7_3:+84740300 Msa1131940:CDS
CAGCGCAGGATTTGATGGTA+TGG 0.515458 7_3:-84736303 None:intergenic
CCAATGGACAAAGTGGGGCT+CGG 0.529481 7_3:-84741410 None:intergenic
TACTTATCCAATGGACAAAG+TGG 0.529817 7_3:-84741417 None:intergenic
CATTAGTACAGTAGTATTCG+AGG 0.530012 7_3:-84741896 None:intergenic
AAAACTTCTATTGTTTGTGA+CGG 0.537304 7_3:+84741940 Msa1131940:three_prime_UTR
TATGGAGAATTACACTATGC+TGG 0.546192 7_3:-84741751 None:intergenic
CTTTGTAGCAGTACCAGTTG+AGG 0.551696 7_3:-84740584 None:intergenic
TTTCTATTGTATGGTACATG+AGG 0.554169 7_3:+84740260 Msa1131940:CDS
TCTTCTACTACTATTTCCAA+AGG 0.567268 7_3:+84741611 Msa1131940:CDS
AAGAAAGTAAGTAATTGTGA+TGG 0.573154 7_3:+84742029 Msa1131940:three_prime_UTR
TGAGAAATTCACATTTAAGG+AGG 0.576216 7_3:+84740381 Msa1131940:CDS
CATACCATCAAATCCTGCGC+TGG 0.578849 7_3:+84736304 Msa1131940:CDS
GAATTTCTCATTGATAAGTA+GGG 0.579233 7_3:-84740368 None:intergenic
ACTTATCCAATGGACAAAGT+GGG 0.585109 7_3:-84741416 None:intergenic
GAGAAGAAGAACGAGGACAC+TGG 0.592249 7_3:-84736275 None:intergenic
TACTAGAAAATAGTGACGGA+AGG 0.599670 7_3:-84740326 None:intergenic
ACAGAATTATACTTATCCAA+TGG 0.602023 7_3:-84741426 None:intergenic
ATTAGTACAGTAGTATTCGA+GGG 0.602763 7_3:-84741895 None:intergenic
ACATGACATGAGAACCACCT+TGG 0.615100 7_3:-84741782 None:intergenic
AAGTATATCTGTCTAGACAA+TGG 0.631594 7_3:+84741835 Msa1131940:three_prime_UTR
GGCAACAGCTTCCAAATACA+GGG 0.635959 7_3:-84740555 None:intergenic
CTTATCCAATGGACAAAGTG+GGG 0.636328 7_3:-84741415 None:intergenic
TCTCACTATAAAACCAAACA+CGG 0.639754 7_3:-84742106 None:intergenic
AAGGTGGTTCTCATGTCATG+TGG 0.644690 7_3:+84741784 Msa1131940:three_prime_UTR
GTGATGGAATATTCTAAACA+GGG 0.646247 7_3:+84742045 Msa1131940:three_prime_UTR
TATACATGGAATAGGTGATG+TGG 0.652075 7_3:+84740525 Msa1131940:intron
AGCACTATACATTCTCAACT+GGG 0.652774 7_3:+84741372 Msa1131940:CDS
GCAATACTAGAAAATAGTGA+CGG 0.652982 7_3:-84740330 None:intergenic
ATGATCTACGAACAATCTTG+TGG 0.654874 7_3:-84740285 None:intergenic
AGTAGGGCCAACAATAAGCA+GGG 0.670399 7_3:-84740352 None:intergenic
AACTACTAGTACTATAGACG+AGG 0.682146 7_3:-84736136 None:intergenic
TTCTCCATACTCGAAAACCA+AGG 0.687479 7_3:+84741765 Msa1131940:three_prime_UTR
TCCATACTCGAAAACCAAGG+TGG 0.724800 7_3:+84741768 Msa1131940:three_prime_UTR
GGATCTTGAGAAGAAGAACG+AGG 0.760931 7_3:-84736282 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTATTTCTTAATGTAATAA+AGG - chr7_3:84738243-84738262 None:intergenic 10.0%
!!! ATCTAATATAAATTTTATAG+CGG - chr7_3:84738300-84738319 None:intergenic 10.0%
!! AATTTATATTAGATAATTCT+AGG + chr7_3:84738306-84738325 Msa1131940:intron 10.0%
!! GATTATTAACATAAATAAAA+TGG - chr7_3:84741659-84741678 None:intergenic 10.0%
!!! TTCATAGAAAAAGTATTTAT+AGG + chr7_3:84736519-84736538 Msa1131940:intron 15.0%
!!! ATTGTATTTTTCATTAATGT+AGG - chr7_3:84737234-84737253 None:intergenic 15.0%
!!! ATACAATTTATTTTAACTAG+TGG + chr7_3:84737247-84737266 Msa1131940:intron 15.0%
!! AGCTATAAAATTTATATTCT+AGG + chr7_3:84738098-84738117 Msa1131940:intron 15.0%
!! ATAGTTTAGAAATTTCTTAA+TGG - chr7_3:84738269-84738288 None:intergenic 15.0%
!! CAAATAAAGAACATAAAAAT+TGG + chr7_3:84739039-84739058 Msa1131940:intron 15.0%
!! AGTATATTCTTAAGTAATAT+AGG - chr7_3:84739508-84739527 None:intergenic 15.0%
!! ATGCAAATATATAATGTTAA+AGG - chr7_3:84740670-84740689 None:intergenic 15.0%
!! CTATAATAAAAAATAAGCAA+TGG + chr7_3:84741237-84741256 Msa1131940:intron 15.0%
!!! ATTTTGAAACTGTTAATGTT+AGG + chr7_3:84736396-84736415 Msa1131940:intron 20.0%
!! TTGTTATATAGTCTATGAAA+TGG + chr7_3:84736603-84736622 Msa1131940:intron 20.0%
!!! AAAGCTACAATATTCTTTTT+GGG - chr7_3:84737281-84737300 None:intergenic 20.0%
!! CAAATATAGATAAACATCAA+CGG + chr7_3:84737462-84737481 Msa1131940:intron 20.0%
!!! ATTATCCTTTTTGATACATT+AGG - chr7_3:84737505-84737524 None:intergenic 20.0%
!!! TAAATCAAACTTTGAAATCA+TGG + chr7_3:84737531-84737550 Msa1131940:intron 20.0%
!!! ATTTTGACTTTGTTGTTAAT+TGG - chr7_3:84737563-84737582 None:intergenic 20.0%
!! TAAATATATTGAGTTCAACA+TGG - chr7_3:84737707-84737726 None:intergenic 20.0%
!! AATAAAACTAGTTAGAAAAG+AGG + chr7_3:84737742-84737761 Msa1131940:intron 20.0%
!!! AACGGTTTATTATTTCTTAA+CGG - chr7_3:84738143-84738162 None:intergenic 20.0%
!! ATAGCTTAGAAATTTCTTAA+CGG - chr7_3:84738161-84738180 None:intergenic 20.0%
!!! AAAACAACATTTTAACAATC+TGG + chr7_3:84738386-84738405 Msa1131940:intron 20.0%
!! AAAAACAGGAATAAAAGAAT+AGG + chr7_3:84738580-84738599 Msa1131940:intron 20.0%
!! ATAAAAGAATAGGAATAAGA+TGG + chr7_3:84738590-84738609 Msa1131940:intron 20.0%
!! ATAGTTAAAATCACATTTGT+TGG + chr7_3:84738625-84738644 Msa1131940:intron 20.0%
!! TAGTTAAAATCACATTTGTT+GGG + chr7_3:84738626-84738645 Msa1131940:intron 20.0%
!! TATTTATAATACTCCATGAT+AGG + chr7_3:84738748-84738767 Msa1131940:intron 20.0%
!! ATTTATAATACTCCATGATA+GGG + chr7_3:84738749-84738768 Msa1131940:intron 20.0%
!!! TAAGTTTTGTTTTCTTTCTT+TGG - chr7_3:84738881-84738900 None:intergenic 20.0%
!! AAGAAAGAAAACAAAACTTA+TGG + chr7_3:84738881-84738900 Msa1131940:intron 20.0%
!! GTACATAAAATTTCTTTCTT+TGG - chr7_3:84738977-84738996 None:intergenic 20.0%
!!! TGTTACTTTATATACTTTTC+AGG - chr7_3:84739005-84739024 None:intergenic 20.0%
!!! GTTTCCTTTGAAAATTTTAT+GGG - chr7_3:84739086-84739105 None:intergenic 20.0%
!! AATTTCTCTCAATTGTTTAA+TGG - chr7_3:84739223-84739242 None:intergenic 20.0%
!! CTTAAGTAATATAGGATAAA+CGG - chr7_3:84739500-84739519 None:intergenic 20.0%
!! AGGTAATTATATTAAGAAAC+TGG - chr7_3:84739778-84739797 None:intergenic 20.0%
!! ATAATGCTCAAAAAATGAAA+AGG - chr7_3:84740031-84740050 None:intergenic 20.0%
!! TAAAAACATTCAAACATGTA+TGG - chr7_3:84740452-84740471 None:intergenic 20.0%
!! CTAGATAAATTATAGCTAAT+GGG + chr7_3:84740990-84741009 Msa1131940:intron 20.0%
!! TAGATAAATTATAGCTAATG+GGG + chr7_3:84740991-84741010 Msa1131940:intron 20.0%
!!! AGTTGAAAGTTTTTATTTGT+TGG + chr7_3:84741124-84741143 Msa1131940:intron 20.0%
!!! TCTTGTTTAATTGTTATCAT+TGG + chr7_3:84741450-84741469 Msa1131940:intron 20.0%
!! ATGAATATTTTCAGATTAGC+TGG + chr7_3:84736235-84736254 Msa1131940:CDS 25.0%
! ATAAATAACGTTGAGAAGAA+AGG - chr7_3:84736343-84736362 None:intergenic 25.0%
! AGTCTAATCTCAATTCTTAT+TGG - chr7_3:84736424-84736443 None:intergenic 25.0%
! TAAGAATTGAGATTAGACTA+AGG + chr7_3:84736425-84736444 Msa1131940:intron 25.0%
!! GTTACATTTTGTTAAAGTAG+AGG + chr7_3:84736696-84736715 Msa1131940:intron 25.0%
! AAGATATCACGTTTATTGAA+TGG - chr7_3:84736765-84736784 None:intergenic 25.0%
! AACATTCTCAAACTAATTCA+AGG - chr7_3:84736789-84736808 None:intergenic 25.0%
! CCTTTATGTTATTAAACTCT+TGG - chr7_3:84736956-84736975 None:intergenic 25.0%
! CCAAGAGTTTAATAACATAA+AGG + chr7_3:84736953-84736972 Msa1131940:intron 25.0%
!! GAAAGCTACAATATTCTTTT+TGG - chr7_3:84737282-84737301 None:intergenic 25.0%
!!! TTTTGATACATTAGGTTGTT+AGG - chr7_3:84737497-84737516 None:intergenic 25.0%
! AACAACCTAATGTATCAAAA+AGG + chr7_3:84737497-84737516 Msa1131940:intron 25.0%
!!! ACTTTGTTGTTAATTGGATT+TGG - chr7_3:84737557-84737576 None:intergenic 25.0%
! ATAATTAAGAATCTCTACTG+TGG + chr7_3:84737663-84737682 Msa1131940:intron 25.0%
! TATTTCGTTTAAACTTACTG+TGG - chr7_3:84737793-84737812 None:intergenic 25.0%
! TTATTCTGACCGAAATAATA+TGG - chr7_3:84737843-84737862 None:intergenic 25.0%
! TATAAGCTATTGATATCACA+GGG - chr7_3:84738012-84738031 None:intergenic 25.0%
! ATATAAGCTATTGATATCAC+AGG - chr7_3:84738013-84738032 None:intergenic 25.0%
!! TTGTGAAACTACTTGATTTT+GGG - chr7_3:84738350-84738369 None:intergenic 25.0%
!! TTTGTGAAACTACTTGATTT+TGG - chr7_3:84738351-84738370 None:intergenic 25.0%
! AGTAGTTTCACAAATGATAT+TGG + chr7_3:84738357-84738376 Msa1131940:intron 25.0%
! GTAGTTTCACAAATGATATT+GGG + chr7_3:84738358-84738377 Msa1131940:intron 25.0%
!! TTCTAAAGAATTGCATAAAG+AGG + chr7_3:84738546-84738565 Msa1131940:intron 25.0%
! AGGAAGAACAAAAAAAAAAC+AGG + chr7_3:84738566-84738585 Msa1131940:intron 25.0%
! TATTATAAATAGATGCCAGA+CGG - chr7_3:84738739-84738758 None:intergenic 25.0%
!!! ATAAAGTAACAGATTTTGAC+AGG + chr7_3:84739014-84739033 Msa1131940:intron 25.0%
!! CAATCCCATAAAATTTTCAA+AGG + chr7_3:84739079-84739098 Msa1131940:intron 25.0%
!!! GGTTTCCTTTGAAAATTTTA+TGG - chr7_3:84739087-84739106 None:intergenic 25.0%
! ACAATTGAGAGAAATTGAAA+CGG + chr7_3:84739227-84739246 Msa1131940:intron 25.0%
!! TTTTGCTTCAGATTTATGTT+AGG + chr7_3:84739527-84739546 Msa1131940:intron 25.0%
! TTCAGATTTATGTTAGGTAT+CGG + chr7_3:84739533-84739552 Msa1131940:intron 25.0%
!!! ATTCTGTTTCTCTTGATTTT+GGG - chr7_3:84739607-84739626 None:intergenic 25.0%
!!! TATTCTGTTTCTCTTGATTT+TGG - chr7_3:84739608-84739627 None:intergenic 25.0%
! TCTATTTCCAGTCAATAATA+TGG - chr7_3:84739631-84739650 None:intergenic 25.0%
! TGTTAGAAATCTTATGGTTT+GGG - chr7_3:84739725-84739744 None:intergenic 25.0%
! TTACTCTGTTAGAAATCTTA+TGG - chr7_3:84739731-84739750 None:intergenic 25.0%
!! AAAACGAAAGACAAAGTATT+AGG - chr7_3:84739888-84739907 None:intergenic 25.0%
! CTATCATTTAACCAATAATG+AGG - chr7_3:84739939-84739958 None:intergenic 25.0%
! GAAGGTGATTAAGAATATAA+AGG + chr7_3:84739965-84739984 Msa1131940:intron 25.0%
!! GATGTATCTTATTTATATGC+AGG + chr7_3:84740115-84740134 Msa1131940:intron 25.0%
!!! TGTTATGAAGTTGATATTCT+TGG + chr7_3:84740228-84740247 Msa1131940:CDS 25.0%
!!! GTTATGAAGTTGATATTCTT+GGG + chr7_3:84740229-84740248 Msa1131940:CDS 25.0%
! GAATTTCTCATTGATAAGTA+GGG - chr7_3:84740371-84740390 None:intergenic 25.0%
! TGAATTTCTCATTGATAAGT+AGG - chr7_3:84740372-84740391 None:intergenic 25.0%
! CAATGAGAAATTCACATTTA+AGG + chr7_3:84740378-84740397 Msa1131940:CDS 25.0%
! AGAAACATTGACAATTTAAC+AGG + chr7_3:84740611-84740630 Msa1131940:CDS 25.0%
! ATATATTTGCATGATTTCTG+TGG + chr7_3:84740678-84740697 Msa1131940:intron 25.0%
! AATTAGCAGCTATTATATTC+TGG + chr7_3:84740722-84740741 Msa1131940:intron 25.0%
! TTTCATGTAACATGTTGTAT+AGG + chr7_3:84740942-84740961 Msa1131940:intron 25.0%
! TATAATTTATCTAGGTGAGT+TGG - chr7_3:84740984-84741003 None:intergenic 25.0%
! CCATTAGCTATAATTTATCT+AGG - chr7_3:84740992-84741011 None:intergenic 25.0%
! CCTAGATAAATTATAGCTAA+TGG + chr7_3:84740989-84741008 Msa1131940:intron 25.0%
! AAGCTAAAACAAGTTCAAAT+GGG - chr7_3:84741284-84741303 None:intergenic 25.0%
! AAAGCTAAAACAAGTTCAAA+TGG - chr7_3:84741285-84741304 None:intergenic 25.0%
!!! TTGAACTTGTTTTAGCTTTT+AGG + chr7_3:84741286-84741305 Msa1131940:intron 25.0%
! ACAGAATTATACTTATCCAA+TGG - chr7_3:84741429-84741448 None:intergenic 25.0%
! ACTGTAATGTTTAACAATGA+TGG - chr7_3:84741504-84741523 None:intergenic 25.0%
! ATCATTGTTAAACATTACAG+TGG + chr7_3:84741503-84741522 Msa1131940:intron 25.0%
! TACTATTTCCAAAGGTAAAT+TGG + chr7_3:84741619-84741638 Msa1131940:intron 25.0%
! AAAACTTCTATTGTTTGTGA+CGG + chr7_3:84741940-84741959 Msa1131940:three_prime_UTR 25.0%
! AAGAAAGTAAGTAATTGTGA+TGG + chr7_3:84742029-84742048 Msa1131940:three_prime_UTR 25.0%
! GAGATTAGACTAAGGTTTTA+AGG + chr7_3:84736433-84736452 Msa1131940:intron 30.0%
CATTGTTATGAAATTTCACC+TGG + chr7_3:84736485-84736504 Msa1131940:intron 30.0%
ATTGAATGTAACTATGCTGT+TGG + chr7_3:84736636-84736655 Msa1131940:intron 30.0%
TGTTAAAGTAGAGGAAATTG+TGG + chr7_3:84736705-84736724 Msa1131940:intron 30.0%
TTATCTTTGTGACTTAGAAG+TGG + chr7_3:84736827-84736846 Msa1131940:intron 30.0%
GGTAAGTTTAGAAAGTTACA+TGG + chr7_3:84736848-84736867 Msa1131940:intron 30.0%
AAGTTTAGAAAGTTACATGG+TGG + chr7_3:84736851-84736870 Msa1131940:intron 30.0%
!! CACAAAAGAGTCTCTAAAAT+TGG - chr7_3:84737039-84737058 None:intergenic 30.0%
!! TTTTAGAGACTCTTTTGTGA+CGG + chr7_3:84737040-84737059 Msa1131940:intron 30.0%
TTAATGTAGGTTACCACAAA+TGG - chr7_3:84737221-84737240 None:intergenic 30.0%
!! AAGTAGGAAAGTGTCAATAA+AGG + chr7_3:84737353-84737372 Msa1131940:intron 30.0%
ATAGATAAACATCAACGGAA+AGG + chr7_3:84737467-84737486 Msa1131940:intron 30.0%
TAGATAAACATCAACGGAAA+GGG + chr7_3:84737468-84737487 Msa1131940:intron 30.0%
TAGTTAGAAAAGAGGCAATA+GGG + chr7_3:84737750-84737769 Msa1131940:intron 30.0%
ATAAGCTATTGATATCACAG+GGG - chr7_3:84738011-84738030 None:intergenic 30.0%
TCAAATCCTTAGATTATGGA+TGG - chr7_3:84738060-84738079 None:intergenic 30.0%
ACGGAATTATCTAAGCATAA+AGG - chr7_3:84738124-84738143 None:intergenic 30.0%
! TGTGAAACTACTTGATTTTG+GGG - chr7_3:84738349-84738368 None:intergenic 30.0%
ATGGGTAGAATAAAGAAACA+TGG + chr7_3:84738484-84738503 Msa1131940:intron 30.0%
TGTTGGGATATTATGATCTT+TGG + chr7_3:84738642-84738661 Msa1131940:intron 30.0%
ACCACATTGAACAAAACTTA+TGG + chr7_3:84738785-84738804 Msa1131940:intron 30.0%
!!! ACCATAAGTTTTGTTCAATG+TGG - chr7_3:84738789-84738808 None:intergenic 30.0%
GACAATTGCATCTGAAAATT+CGG + chr7_3:84739134-84739153 Msa1131940:intron 30.0%
CAATTGAGAGAAATTGAAAC+GGG + chr7_3:84739228-84739247 Msa1131940:intron 30.0%
AGACTATAACAATCAAAGCA+TGG - chr7_3:84739445-84739464 None:intergenic 30.0%
TCAGATTTATGTTAGGTATC+GGG + chr7_3:84739534-84739553 Msa1131940:intron 30.0%
TTGCATCTTAGACTAACAAA+TGG + chr7_3:84739558-84739577 Msa1131940:intron 30.0%
CAGAATACCATATTATTGAC+TGG + chr7_3:84739621-84739640 Msa1131940:intron 30.0%
CTGTTAGAAATCTTATGGTT+TGG - chr7_3:84739726-84739745 None:intergenic 30.0%
TATTAAGAAACTGGTAGCAA+GGG - chr7_3:84739769-84739788 None:intergenic 30.0%
ATATTAAGAAACTGGTAGCA+AGG - chr7_3:84739770-84739789 None:intergenic 30.0%
TAATTACCTTTCCTCTCTAA+CGG + chr7_3:84739789-84739808 Msa1131940:intron 30.0%
! AAGACAAAGTATTAGGTACT+GGG - chr7_3:84739881-84739900 None:intergenic 30.0%
! AAAGACAAAGTATTAGGTAC+TGG - chr7_3:84739882-84739901 None:intergenic 30.0%
AGACTTTGTTCATCCATAAA+CGG - chr7_3:84739911-84739930 None:intergenic 30.0%
! AAGTCTGTTTTCCTCATTAT+TGG + chr7_3:84739925-84739944 Msa1131940:intron 30.0%
GTTAAATGATAGAAGAGTGA+AGG + chr7_3:84739947-84739966 Msa1131940:intron 30.0%
! TTTGTGTTTTTCTCTGACTT+TGG + chr7_3:84740093-84740112 Msa1131940:intron 30.0%
! GAAGCTCATTTTCTATTGTA+TGG + chr7_3:84740251-84740270 Msa1131940:CDS 30.0%
TTTCTATTGTATGGTACATG+AGG + chr7_3:84740260-84740279 Msa1131940:CDS 30.0%
TAGATCATATGACAAAGATC+AGG + chr7_3:84740300-84740319 Msa1131940:CDS 30.0%
GCAATACTAGAAAATAGTGA+CGG - chr7_3:84740333-84740352 None:intergenic 30.0%
TGAGAAATTCACATTTAAGG+AGG + chr7_3:84740381-84740400 Msa1131940:CDS 30.0%
! TTCCATGTATAAGCAGTTTT+GGG - chr7_3:84740516-84740535 None:intergenic 30.0%
! ATTCCATGTATAAGCAGTTT+TGG - chr7_3:84740517-84740536 None:intergenic 30.0%
AAACTGCTTATACATGGAAT+AGG + chr7_3:84740517-84740536 Msa1131940:intron 30.0%
GACAATATGTCTTTCTTCTT+GGG + chr7_3:84740633-84740652 Msa1131940:CDS 30.0%
CAACTCAAGATCATAATAGA+AGG - chr7_3:84741109-84741128 None:intergenic 30.0%
! TTTATTTGTTGGAACGAAAC+TGG + chr7_3:84741135-84741154 Msa1131940:intron 30.0%
AACCTTAATAAGCAGAACTT+TGG - chr7_3:84741182-84741201 None:intergenic 30.0%
ATGGTAACTTTGTATATCAG+AGG + chr7_3:84741256-84741275 Msa1131940:intron 30.0%
TCTTCTACTACTATTTCCAA+AGG + chr7_3:84741611-84741630 Msa1131940:CDS 30.0%
TGAAAATATTGCCTTGTAGT+TGG + chr7_3:84741704-84741723 Msa1131940:intron 30.0%
AAGTATATCTGTCTAGACAA+TGG + chr7_3:84741835-84741854 Msa1131940:three_prime_UTR 30.0%
ATTAGTACAGTAGTATTCGA+GGG - chr7_3:84741898-84741917 None:intergenic 30.0%
TACTTTCTTTACCATAGAAG+TGG - chr7_3:84742018-84742037 None:intergenic 30.0%
! TGTGATGGAATATTCTAAAC+AGG + chr7_3:84742044-84742063 Msa1131940:three_prime_UTR 30.0%
! GTGATGGAATATTCTAAACA+GGG + chr7_3:84742045-84742064 Msa1131940:three_prime_UTR 30.0%
GAATATTCTAAACAGGGATT+GGG + chr7_3:84742051-84742070 Msa1131940:three_prime_UTR 30.0%
! CCAAACACGGTTTAAAATAA+GGG - chr7_3:84742096-84742115 None:intergenic 30.0%
! ACCAAACACGGTTTAAAATA+AGG - chr7_3:84742097-84742116 None:intergenic 30.0%
TCTCACTATAAAACCAAACA+CGG - chr7_3:84742109-84742128 None:intergenic 30.0%
AACTACTAGTACTATAGACG+AGG - chr7_3:84736139-84736158 None:intergenic 35.0%
! CAAGAATCGAAATCGTTTTC+AGG - chr7_3:84736167-84736186 None:intergenic 35.0%
ACGATTTCGATTCTTGCAAT+CGG + chr7_3:84736171-84736190 Msa1131940:five_prime_UTR 35.0%
TTCTTCGCTTTGATTAGATC+TGG - chr7_3:84736209-84736228 None:intergenic 35.0%
AAAAAAATAGATACCAGCGC+AGG - chr7_3:84736320-84736339 None:intergenic 35.0%
GTTATGAAATTTCACCTGGT+AGG + chr7_3:84736489-84736508 Msa1131940:intron 35.0%
CTATGAATAACAATCCTACC+AGG - chr7_3:84736506-84736525 None:intergenic 35.0%
CTACAGATAGATTCAGTTAC+TGG + chr7_3:84736550-84736569 Msa1131940:intron 35.0%
TAACACACACTTCAGATTGA+AGG - chr7_3:84736680-84736699 None:intergenic 35.0%
! ATTGTGGTGTTCATTTTCCT+TGG + chr7_3:84736721-84736740 Msa1131940:intron 35.0%
CAGACATTGTACAAATTCCA+AGG - chr7_3:84736741-84736760 None:intergenic 35.0%
AGTTACATGGTGGTAGAATT+TGG + chr7_3:84736861-84736880 Msa1131940:intron 35.0%
GTTACATGGTGGTAGAATTT+GGG + chr7_3:84736862-84736881 Msa1131940:intron 35.0%
! ACCATTTGAAACATGCTCAA+TGG + chr7_3:84737079-84737098 Msa1131940:intron 35.0%
TCCATTGAGCATGTTTCAAA+TGG - chr7_3:84737083-84737102 None:intergenic 35.0%
ACATAAGAAACTGTGTGAGT+AGG + chr7_3:84737113-84737132 Msa1131940:intron 35.0%
! CAGCAGCAAAAAGTATATTC+TGG + chr7_3:84737148-84737167 Msa1131940:intron 35.0%
!! CACAAATGGAATAGCTCTAA+GGG - chr7_3:84737207-84737226 None:intergenic 35.0%
AGATAAACATCAACGGAAAG+GGG + chr7_3:84737469-84737488 Msa1131940:intron 35.0%
CTAGTTAGAAAAGAGGCAAT+AGG + chr7_3:84737749-84737768 Msa1131940:intron 35.0%
! CACAGTTAAGATGAGTTTTC+AGG + chr7_3:84737813-84737832 Msa1131940:intron 35.0%
TCAGGCACACCATATTATTT+CGG + chr7_3:84737831-84737850 Msa1131940:intron 35.0%
! AGAATAACCATCCAAGGTTT+TGG + chr7_3:84737856-84737875 Msa1131940:intron 35.0%
TAGAATTTCCGCATTCTAGA+TGG - chr7_3:84737959-84737978 None:intergenic 35.0%
CAGCTCAAATCCTTAGATTA+TGG - chr7_3:84738064-84738083 None:intergenic 35.0%
CTACTATGCATACAAGCTAT+GGG + chr7_3:84738466-84738485 Msa1131940:intron 35.0%
AACTTTACCAAGAGTTCATG+TGG + chr7_3:84738516-84738535 Msa1131940:intron 35.0%
AGAATAGGAATAAGATGGAG+AGG + chr7_3:84738595-84738614 Msa1131940:intron 35.0%
ATTGAATGCTCCAGATTGAT+TGG + chr7_3:84738694-84738713 Msa1131940:intron 35.0%
TTGAATGCTCCAGATTGATT+GGG + chr7_3:84738695-84738714 Msa1131940:intron 35.0%
! TTTTCAGATGCAATTGTCTC+CGG - chr7_3:84739132-84739151 None:intergenic 35.0%
AATTGCATCTGAAAATTCGG+TGG + chr7_3:84739137-84739156 Msa1131940:intron 35.0%
!! TCTGAAAATTCGGTGGATTA+TGG + chr7_3:84739144-84739163 Msa1131940:intron 35.0%
GTTTAATGGCTTCTTTCAAG+TGG - chr7_3:84739209-84739228 None:intergenic 35.0%
GAAATTGAAACGGGCAAAAA+TGG + chr7_3:84739237-84739256 Msa1131940:intron 35.0%
CTTTGATTGTTATAGTCTCG+TGG + chr7_3:84739447-84739466 Msa1131940:intron 35.0%
AGAATTGTCTCTTCTCCTAA+AGG - chr7_3:84739695-84739714 None:intergenic 35.0%
ATTAAGAAACTGGTAGCAAG+GGG - chr7_3:84739768-84739787 None:intergenic 35.0%
TTGTAGCCAATTCTCCTATT+TGG + chr7_3:84739830-84739849 Msa1131940:intron 35.0%
AATGAGCCAAATAGGAGAAT+TGG - chr7_3:84739839-84739858 None:intergenic 35.0%
!!! CTCCTATTTGGCTCATTTTT+TGG + chr7_3:84739842-84739861 Msa1131940:intron 35.0%
GACCAAAAAATGAGCCAAAT+AGG - chr7_3:84739847-84739866 None:intergenic 35.0%
!!! TTGGCTCATTTTTTGGTCTA+AGG + chr7_3:84739849-84739868 Msa1131940:intron 35.0%
!! AAGTATTAGGTACTGGGTTT+GGG - chr7_3:84739875-84739894 None:intergenic 35.0%
!! AAAGTATTAGGTACTGGGTT+TGG - chr7_3:84739876-84739895 None:intergenic 35.0%
! TGTCTTTCGTTTTCCGTTTA+TGG + chr7_3:84739895-84739914 Msa1131940:intron 35.0%
ATGATCTACGAACAATCTTG+TGG - chr7_3:84740288-84740307 None:intergenic 35.0%
! TACTAGAAAATAGTGACGGA+AGG - chr7_3:84740329-84740348 None:intergenic 35.0%
TATACATGGAATAGGTGATG+TGG + chr7_3:84740525-84740544 Msa1131940:intron 35.0%
GGACAATATGTCTTTCTTCT+TGG + chr7_3:84740632-84740651 Msa1131940:CDS 35.0%
TTTCAATGAAGCCAACAAAC+AGG - chr7_3:84741069-84741088 None:intergenic 35.0%
TTGAAACTGATCAATGAGAC+TGG + chr7_3:84741083-84741102 Msa1131940:intron 35.0%
GGCTTCAAGATCATAATAGA+AGG - chr7_3:84741161-84741180 None:intergenic 35.0%
AGCCAAAGTTCTGCTTATTA+AGG + chr7_3:84741177-84741196 Msa1131940:intron 35.0%
AGCACTATACATTCTCAACT+GGG + chr7_3:84741372-84741391 Msa1131940:CDS 35.0%
ACTTATCCAATGGACAAAGT+GGG - chr7_3:84741419-84741438 None:intergenic 35.0%
TACTTATCCAATGGACAAAG+TGG - chr7_3:84741420-84741439 None:intergenic 35.0%
TTGGTTTATGCTCTTTAGAC+TGG + chr7_3:84741469-84741488 Msa1131940:intron 35.0%
! CATTACTTCTTTTGCAGCAT+GGG + chr7_3:84741552-84741571 Msa1131940:intron 35.0%
ATAAAATGGACCTGACAAGT+AGG - chr7_3:84741645-84741664 None:intergenic 35.0%
TATGGAGAATTACACTATGC+TGG - chr7_3:84741754-84741773 None:intergenic 35.0%
GGAGCAAAAACGAACAAATA+TGG - chr7_3:84741877-84741896 None:intergenic 35.0%
CATTAGTACAGTAGTATTCG+AGG - chr7_3:84741899-84741918 None:intergenic 35.0%
GGAATATTCTAAACAGGGAT+TGG + chr7_3:84742050-84742069 Msa1131940:three_prime_UTR 35.0%
!!! CCCTTATTTTAAACCGTGTT+TGG + chr7_3:84742093-84742112 Msa1131940:three_prime_UTR 35.0%
!!! GTGTTTGGTTTTATAGTGAG+AGG + chr7_3:84742108-84742127 Msa1131940:three_prime_UTR 35.0%
!! AGTTAGAGAAAGTCGATTTG+AGG + chr7_3:84742137-84742156 Msa1131940:three_prime_UTR 35.0%
!! CTATAGACGAGGTGTTTTTG+TGG - chr7_3:84736128-84736147 None:intergenic 40.0%
TGACAGATCAGATTTGTGCA+TGG - chr7_3:84736929-84736948 None:intergenic 40.0%
! CCACAAATGGAATAGCTCTA+AGG - chr7_3:84737208-84737227 None:intergenic 40.0%
CCTTAGAGCTATTCCATTTG+TGG + chr7_3:84737205-84737224 Msa1131940:intron 40.0%
TGTTGATACCATGCTGAAGT+AGG + chr7_3:84737337-84737356 Msa1131940:intron 40.0%
TTAGAAAAGAGGCAATAGGG+AGG + chr7_3:84737753-84737772 Msa1131940:intron 40.0%
TCATGTGATTGCCAAAACCT+TGG - chr7_3:84737870-84737889 None:intergenic 40.0%
ATACACACAGGATTTGTCTC+AGG - chr7_3:84737932-84737951 None:intergenic 40.0%
! GTATCAAGCCATCTAGAATG+CGG + chr7_3:84737948-84737967 Msa1131940:intron 40.0%
ATTGCAAACCTGATCCAAGA+AGG + chr7_3:84738034-84738053 Msa1131940:intron 40.0%
TAGATTATGGATGGCCTTCT+TGG - chr7_3:84738051-84738070 None:intergenic 40.0%
AGAAGGCCATCCATAATCTA+AGG + chr7_3:84738051-84738070 Msa1131940:intron 40.0%
GCTTGTATGCATAGTAGCTA+CGG - chr7_3:84738463-84738482 None:intergenic 40.0%
GCTACTATGCATACAAGCTA+TGG + chr7_3:84738465-84738484 Msa1131940:intron 40.0%
! TGTGTTGTTCCCAATCAATC+TGG - chr7_3:84738707-84738726 None:intergenic 40.0%
TATAAATAGATGCCAGACGG+TGG - chr7_3:84738736-84738755 None:intergenic 40.0%
TACTCCATGATAGGGCAAAA+TGG + chr7_3:84738757-84738776 Msa1131940:intron 40.0%
! TGTACCATTTTGCCCTATCA+TGG - chr7_3:84738764-84738783 None:intergenic 40.0%
!! TTCTGAAGTATTACCGCGTA+GGG + chr7_3:84738939-84738958 Msa1131940:intron 40.0%
TTTCAGATGCAATTGTCTCC+GGG - chr7_3:84739131-84739150 None:intergenic 40.0%
TGGAGATGGACAGTAAAAAG+TGG + chr7_3:84739257-84739276 Msa1131940:intron 40.0%
GTTCCTATCAATTCTCTGGT+TGG - chr7_3:84739585-84739604 None:intergenic 40.0%
TTGGGTTCCTATCAATTCTC+TGG - chr7_3:84739589-84739608 None:intergenic 40.0%
GTAGAAACCTGCTTATCTGT+TGG + chr7_3:84740001-84740020 Msa1131940:intron 40.0%
AGGAAAACCAACAGATAAGC+AGG - chr7_3:84740011-84740030 None:intergenic 40.0%
AGTATTGCCCTGCTTATTGT+TGG + chr7_3:84740345-84740364 Msa1131940:CDS 40.0%
GTCCCAAAACTGCTTATACA+TGG + chr7_3:84740511-84740530 Msa1131940:intron 40.0%
! GTGGACATTTTCCCTGTATT+TGG + chr7_3:84740544-84740563 Msa1131940:CDS 40.0%
CTTTCTTCTTGGGTAAGCTA+TGG + chr7_3:84740643-84740662 Msa1131940:intron 40.0%
CTGATCAACAGCCAAATAAC+TGG + chr7_3:84740759-84740778 Msa1131940:intron 40.0%
TCAACAGCCAAATAACTGGA+AGG + chr7_3:84740763-84740782 Msa1131940:intron 40.0%
AGACCAACCTTCCAGTTATT+TGG - chr7_3:84740773-84740792 None:intergenic 40.0%
! GTGAGTTGGATTGACAACTT+TGG - chr7_3:84740970-84740989 None:intergenic 40.0%
TAGCTAATGGGGACAACAAA+AGG + chr7_3:84741002-84741021 Msa1131940:intron 40.0%
CTTTGTCTGTGAAATGCAGT+GGG + chr7_3:84741344-84741363 Msa1131940:intron 40.0%
GAGCACTATACATTCTCAAC+TGG + chr7_3:84741371-84741390 Msa1131940:CDS 40.0%
CTTATCCAATGGACAAAGTG+GGG - chr7_3:84741418-84741437 None:intergenic 40.0%
AATGGAAGGAAGTCAGAACA+AGG - chr7_3:84741536-84741555 None:intergenic 40.0%
! GCTGCAAAAGAAGTAATGGA+AGG - chr7_3:84741550-84741569 None:intergenic 40.0%
CCATGCTGCAAAAGAAGTAA+TGG - chr7_3:84741554-84741573 None:intergenic 40.0%
! CCATTACTTCTTTTGCAGCA+TGG + chr7_3:84741551-84741570 Msa1131940:intron 40.0%
CAAGTAGGCCAATTTACCTT+TGG - chr7_3:84741630-84741649 None:intergenic 40.0%
GCTCAAAACTAAGACGAACA+AGG - chr7_3:84741681-84741700 None:intergenic 40.0%
TGGTTGTTCTTCCAACTACA+AGG - chr7_3:84741718-84741737 None:intergenic 40.0%
TTCTCCATACTCGAAAACCA+AGG + chr7_3:84741765-84741784 Msa1131940:three_prime_UTR 40.0%
TCCAACACATTCCACTTCTA+TGG + chr7_3:84742004-84742023 Msa1131940:three_prime_UTR 40.0%
ACCATAGAAGTGGAATGTGT+TGG - chr7_3:84742008-84742027 None:intergenic 40.0%
AGCTGGTGATATGACCCATT+TGG + chr7_3:84736252-84736271 Msa1131940:CDS 45.0%
GGATCTTGAGAAGAAGAACG+AGG - chr7_3:84736285-84736304 None:intergenic 45.0%
CTGTCTACTGATGCATTCTC+TGG + chr7_3:84736577-84736596 Msa1131940:intron 45.0%
ATCAGATTTGTGCATGGCAC+AGG - chr7_3:84736923-84736942 None:intergenic 45.0%
! GTATATTCTGGCTGCATTGC+TGG + chr7_3:84737160-84737179 Msa1131940:intron 45.0%
!! GCTCTAAGGGTTGATGGATA+TGG - chr7_3:84737194-84737213 None:intergenic 45.0%
!! GGAATAGCTCTAAGGGTTGA+TGG - chr7_3:84737200-84737219 None:intergenic 45.0%
GACACTTTCCTACTTCAGCA+TGG - chr7_3:84737348-84737367 None:intergenic 45.0%
TCGGTCAGAATAACCATCCA+AGG + chr7_3:84737850-84737869 Msa1131940:intron 45.0%
GTGATTGCCAAAACCTTGGA+TGG - chr7_3:84737866-84737885 None:intergenic 45.0%
CTAGATGGCTTGATACACAC+AGG - chr7_3:84737944-84737963 None:intergenic 45.0%
TTGGGGCTGAGTAGTTTAGA+GGG - chr7_3:84738332-84738351 None:intergenic 45.0%
! TTTGGGGCTGAGTAGTTTAG+AGG - chr7_3:84738333-84738352 None:intergenic 45.0%
TACCAAGAGTTCATGTGGTC+TGG + chr7_3:84738521-84738540 Msa1131940:intron 45.0%
! TCCTGAAGTATTACCGCGTA+GGG + chr7_3:84738843-84738862 Msa1131940:intron 45.0%
ACGCGGTAATACTTCAGAAC+TGG - chr7_3:84738938-84738957 None:intergenic 45.0%
!! GTTCTGAAGTATTACCGCGT+AGG + chr7_3:84738938-84738957 Msa1131940:intron 45.0%
! TCTGAAGTATTACCGCGTAG+GGG + chr7_3:84738940-84738959 Msa1131940:intron 45.0%
TTCAGATGCAATTGTCTCCG+GGG - chr7_3:84739130-84739149 None:intergenic 45.0%
GAAACGGGCAAAAATGGAGA+TGG + chr7_3:84739243-84739262 Msa1131940:intron 45.0%
!!! CTGCTAGTCTTTTGTCAGTG+CGG + chr7_3:84739341-84739360 Msa1131940:intron 45.0%
!!! TGCTAGTCTTTTGTCAGTGC+GGG + chr7_3:84739342-84739361 Msa1131940:intron 45.0%
GGACCAACCAGAGAATTGAT+AGG + chr7_3:84739579-84739598 Msa1131940:intron 45.0%
CACAGAGCAAAAGCTCCTTT+AGG + chr7_3:84739677-84739696 Msa1131940:intron 45.0%
GCAAATCCGTTAGAGAGGAA+AGG - chr7_3:84739798-84739817 None:intergenic 45.0%
TTGGCTACAATTTGCGTACG+TGG - chr7_3:84739820-84739839 None:intergenic 45.0%
AGCAGGTTTCTACTCGTCTA+AGG - chr7_3:84739994-84740013 None:intergenic 45.0%
AGTAGGGCCAACAATAAGCA+GGG - chr7_3:84740355-84740374 None:intergenic 45.0%
AAGTAGGGCCAACAATAAGC+AGG - chr7_3:84740356-84740375 None:intergenic 45.0%
GGCAACAGCTTCCAAATACA+GGG - chr7_3:84740558-84740577 None:intergenic 45.0%
TGGCAACAGCTTCCAAATAC+AGG - chr7_3:84740559-84740578 None:intergenic 45.0%
TGTTGCCATACTTCCTCAAC+TGG + chr7_3:84740571-84740590 Msa1131940:CDS 45.0%
CAGTACCAGTTGAGGAAGTA+TGG - chr7_3:84740579-84740598 None:intergenic 45.0%
CTTTGTAGCAGTACCAGTTG+AGG - chr7_3:84740587-84740606 None:intergenic 45.0%
CAGCCAAATAACTGGAAGGT+TGG + chr7_3:84740767-84740786 Msa1131940:intron 45.0%
GCATAGAACGAGCTTAGTAG+TGG + chr7_3:84740811-84740830 Msa1131940:intron 45.0%
GCTTTGTCTGTGAAATGCAG+TGG + chr7_3:84741343-84741362 Msa1131940:intron 45.0%
! TCTTTTGCAGCATGGGTTTC+TGG + chr7_3:84741559-84741578 Msa1131940:intron 45.0%
! CTTTTGCAGCATGGGTTTCT+GGG + chr7_3:84741560-84741579 Msa1131940:intron 45.0%
! GGTAAATTGGCCTACTTGTC+AGG + chr7_3:84741632-84741651 Msa1131940:intron 45.0%
ATGCTGGCAAATGAAGCTTC+TGG - chr7_3:84741738-84741757 None:intergenic 45.0%
TCCATACTCGAAAACCAAGG+TGG + chr7_3:84741768-84741787 Msa1131940:three_prime_UTR 45.0%
!!! ACCACCTTGGTTTTCGAGTA+TGG - chr7_3:84741772-84741791 None:intergenic 45.0%
ACATGACATGAGAACCACCT+TGG - chr7_3:84741785-84741804 None:intergenic 45.0%
AAGGTGGTTCTCATGTCATG+TGG + chr7_3:84741784-84741803 Msa1131940:three_prime_UTR 45.0%
!! AAACAATTAAAAATTAAAAT+TGG + chr7_3:84736461-84736480 Msa1131940:intron 5.0%
AACGAGGACACTGGCCAAAT+GGG - chr7_3:84736269-84736288 None:intergenic 50.0%
GAGAAGAAGAACGAGGACAC+TGG - chr7_3:84736278-84736297 None:intergenic 50.0%
! CAGCGCAGGATTTGATGGTA+TGG - chr7_3:84736306-84736325 None:intergenic 50.0%
CATACCATCAAATCCTGCGC+TGG + chr7_3:84736304-84736323 Msa1131940:CDS 50.0%
GATACCAGCGCAGGATTTGA+TGG - chr7_3:84736311-84736330 None:intergenic 50.0%
! CTTCAGATTGAAGGCGTGTG+AGG - chr7_3:84736671-84736690 None:intergenic 50.0%
CGGACACTAGTATGGCTACA+TGG - chr7_3:84736899-84736918 None:intergenic 50.0%
GATTTGTGCATGGCACAGGT+CGG - chr7_3:84736919-84736938 None:intergenic 50.0%
ATGGATGGCCTTCTTGGATC+AGG - chr7_3:84738045-84738064 None:intergenic 50.0%
GTCCAGACCACATGAACTCT+TGG - chr7_3:84738526-84738545 None:intergenic 50.0%
AAATAGATGCCAGACGGTGG+TGG - chr7_3:84738733-84738752 None:intergenic 50.0%
ACGCGGTAATACTTCAGGAC+TGG - chr7_3:84738842-84738861 None:intergenic 50.0%
! GTCCTGAAGTATTACCGCGT+AGG + chr7_3:84738842-84738861 Msa1131940:intron 50.0%
! CCTGAAGTATTACCGCGTAG+GGG + chr7_3:84738844-84738863 Msa1131940:intron 50.0%
! CTGAAGTATTACCGCGTAGG+GGG + chr7_3:84738845-84738864 Msa1131940:intron 50.0%
! CTGAAGTATTACCGCGTAGG+GGG + chr7_3:84738845-84738864 Msa1131940:intron 50.0%
TCAGATGCAATTGTCTCCGG+GGG - chr7_3:84739129-84739148 None:intergenic 50.0%
! TAGTCTTTTGTCAGTGCGGG+AGG + chr7_3:84739345-84739364 Msa1131940:intron 50.0%
ACGTGGCAAATCCGTTAGAG+AGG - chr7_3:84739803-84739822 None:intergenic 50.0%
GAACGAGGACACTGGCCAAA+TGG - chr7_3:84736270-84736289 None:intergenic 55.0%
GCACAGGTCGGACACTAGTA+TGG - chr7_3:84736907-84736926 None:intergenic 55.0%
CCCCTACGCGGTAATACTTC+AGG - chr7_3:84738847-84738866 None:intergenic 55.0%
TGTCAGTGCGGGAGGAATCT+TGG + chr7_3:84739353-84739372 Msa1131940:intron 55.0%
GTCAGTGCGGGAGGAATCTT+GGG + chr7_3:84739354-84739373 Msa1131940:intron 55.0%
TCAGTGCGGGAGGAATCTTG+GGG + chr7_3:84739355-84739374 Msa1131940:intron 55.0%
GAAACTGGTAGCAAGGGGAG+AGG - chr7_3:84739763-84739782 None:intergenic 55.0%
CCAATGGACAAAGTGGGGCT+CGG - chr7_3:84741413-84741432 None:intergenic 55.0%
AACACACCTCCACCACCGTC+TGG + chr7_3:84738721-84738740 Msa1131940:intron 60.0%
! TAGATGCCAGACGGTGGTGG+AGG - chr7_3:84738730-84738749 None:intergenic 60.0%
GTAGTCAGACTCCCCCTACG+CGG - chr7_3:84738859-84738878 None:intergenic 60.0%
GTAGTCAGACTCCCCCTACG+CGG - chr7_3:84738859-84738878 None:intergenic 60.0%
GGCGGCTGCGTTCAATGCAA+AGG - chr7_3:84739108-84739127 None:intergenic 60.0%
GATGCAATTGTCTCCGGGGG+CGG - chr7_3:84739126-84739145 None:intergenic 60.0%
!! GGAATCTTGGGGTGCTGCTC+AGG + chr7_3:84739366-84739385 Msa1131940:intron 60.0%
CCGAGCCCCACTTTGTCCAT+TGG + chr7_3:84741410-84741429 Msa1131940:CDS 60.0%
GCATTGAACGCAGCCGCCCC+CGG + chr7_3:84739110-84739129 Msa1131940:intron 70.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 84736058 84742179 84736058 ID=Msa1131940;Name=Msa1131940
chr7_3 mRNA 84736058 84742179 84736058 ID=Msa1131940-mRNA-1;Parent=Msa1131940;Name=Msa1131940-mRNA-1;_AED=0.12;_eAED=0.12;_QI=177|1|1|1|0.6|0.66|6|420|215
chr7_3 exon 84736058 84736325 84736058 ID=Msa1131940-mRNA-1:exon:25218;Parent=Msa1131940-mRNA-1
chr7_3 exon 84740137 84740402 84740137 ID=Msa1131940-mRNA-1:exon:25219;Parent=Msa1131940-mRNA-1
chr7_3 exon 84740539 84740654 84740539 ID=Msa1131940-mRNA-1:exon:25220;Parent=Msa1131940-mRNA-1
chr7_3 exon 84741363 84741436 84741363 ID=Msa1131940-mRNA-1:exon:25221;Parent=Msa1131940-mRNA-1
chr7_3 exon 84741569 84741632 84741569 ID=Msa1131940-mRNA-1:exon:25222;Parent=Msa1131940-mRNA-1
chr7_3 exon 84741723 84742179 84741723 ID=Msa1131940-mRNA-1:exon:25223;Parent=Msa1131940-mRNA-1
chr7_3 five_prime_UTR 84736058 84736234 84736058 ID=Msa1131940-mRNA-1:five_prime_utr;Parent=Msa1131940-mRNA-1
chr7_3 CDS 84736235 84736325 84736235 ID=Msa1131940-mRNA-1:cds;Parent=Msa1131940-mRNA-1
chr7_3 CDS 84740137 84740402 84740137 ID=Msa1131940-mRNA-1:cds;Parent=Msa1131940-mRNA-1
chr7_3 CDS 84740539 84740654 84740539 ID=Msa1131940-mRNA-1:cds;Parent=Msa1131940-mRNA-1
chr7_3 CDS 84741363 84741436 84741363 ID=Msa1131940-mRNA-1:cds;Parent=Msa1131940-mRNA-1
chr7_3 CDS 84741569 84741632 84741569 ID=Msa1131940-mRNA-1:cds;Parent=Msa1131940-mRNA-1
chr7_3 CDS 84741723 84741759 84741723 ID=Msa1131940-mRNA-1:cds;Parent=Msa1131940-mRNA-1
chr7_3 three_prime_UTR 84741760 84742179 84741760 ID=Msa1131940-mRNA-1:three_prime_utr;Parent=Msa1131940-mRNA-1
Gene Sequence

>Msa1131940

ATGAATATTTTCAGATTAGCTGGTGATATGACCCATTTGGCCAGTGTCCTCGTTCTTCTTCTCAAGATCCATACCATCAAATCCTGCGCTGGTGTCTCGTTGAAAACTCAAGAACTCTACGCACTTGTTTTTGCTGCTCGCTACTTAGATATCTTTACGAATTACGTATCTCTCTATAATACTGTTATGAAGTTGATATTCTTGGGAAGCTCATTTTCTATTGTATGGTACATGAGGTACCACAAGATTGTTCGTAGATCATATGACAAAGATCAGGATACCTTCCGTCACTATTTTCTAGTATTGCCCTGCTTATTGTTGGCCCTACTTATCAATGAGAAATTCACATTTAAGGAGGTGATGTGGACATTTTCCCTGTATTTGGAAGCTGTTGCCATACTTCCTCAACTGGTACTGCTACAAAGAACTAGAAACATTGACAATTTAACAGGACAATATGTCTTTCTTCTTGGTGGGTACAGAGCACTATACATTCTCAACTGGGTCTATCGCTACTTTACCGAGCCCCACTTTGTCCATTGGATAACATGGGTTTCTGGGCTTGTTCAAACACTGCTATATGCTGACTTCTTCTACTACTATTTCCAAAGTTGGAAGAACAACCAGAAGCTTCATTTGCCAGCATAG

Protein sequence

>Msa1131940

MNIFRLAGDMTHLASVLVLLLKIHTIKSCAGVSLKTQELYALVFAARYLDIFTNYVSLYNTVMKLIFLGSSFSIVWYMRYHKIVRRSYDKDQDTFRHYFLVLPCLLLALLINEKFTFKEVMWTFSLYLEAVAILPQLVLLQRTRNIDNLTGQYVFLLGGYRALYILNWVYRYFTEPHFVHWITWVSGLVQTLLYADFFYYYFQSWKNNQKLHLPA*