Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1336120 | XP_003625812.1 | 96.667 | 360 | 11 | 1 | 1 | 360 | 1 | 359 | 0.0 | 705 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1336120 | sp|O82533|FTZ21_ARATH | 71.910 | 356 | 79 | 5 | 8 | 360 | 5 | 342 | 6.37e-153 | 442 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1336120 | G7L633 | 96.667 | 360 | 11 | 1 | 1 | 360 | 1 | 359 | 0.0 | 705 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0007480 | Msa1336120 | 0.811127 | 8.178654e-51 | -8.615850e-47 |
| Msa0016670 | Msa1336120 | 0.802006 | 6.885267e-49 | -8.615850e-47 |
| Msa0029710 | Msa1336120 | 0.807331 | 5.326223e-50 | -8.615850e-47 |
| Msa0067280 | Msa1336120 | 0.828502 | 8.676283e-55 | -8.615850e-47 |
| Msa0095900 | Msa1336120 | 0.839286 | 1.735516e-57 | -8.615850e-47 |
| Msa0110970 | Msa1336120 | 0.822668 | 2.094013e-53 | -8.615850e-47 |
| Msa0115160 | Msa1336120 | 0.800283 | 1.549673e-48 | -8.615850e-47 |
| Msa0118570 | Msa1336120 | 0.800399 | 1.467665e-48 | -8.615850e-47 |
| Msa0609450 | Msa1336120 | 0.804150 | 2.480448e-49 | -8.615850e-47 |
| Msa0625630 | Msa1336120 | 0.803382 | 3.580517e-49 | -8.615850e-47 |
| Msa0650090 | Msa1336120 | 0.800992 | 1.110891e-48 | -8.615850e-47 |
| Msa0660310 | Msa1336120 | 0.805390 | 1.365920e-49 | -8.615850e-47 |
| Msa0663300 | Msa1336120 | 0.814695 | 1.351256e-51 | -8.615850e-47 |
| Msa0664060 | Msa1336120 | 0.816742 | 4.727754e-52 | -8.615850e-47 |
| Msa0711970 | Msa1336120 | 0.801089 | 1.061399e-48 | -8.615850e-47 |
| Msa0718550 | Msa1336120 | 0.803207 | 3.891317e-49 | -8.615850e-47 |
| Msa0749740 | Msa1336120 | 0.817042 | 4.047329e-52 | -8.615850e-47 |
| Msa0750090 | Msa1336120 | 0.813326 | 2.709063e-51 | -8.615850e-47 |
| Msa0754520 | Msa1336120 | 0.835726 | 1.418683e-56 | -8.615850e-47 |
| Msa0759650 | Msa1336120 | 0.823214 | 1.562630e-53 | -8.615850e-47 |
| Msa0801210 | Msa1336120 | 0.851900 | 6.563660e-61 | -8.615850e-47 |
| Msa0825020 | Msa1336120 | 0.813429 | 2.571146e-51 | -8.615850e-47 |
| Msa0829800 | Msa1336120 | 0.810269 | 1.253485e-50 | -8.615850e-47 |
| Msa0833220 | Msa1336120 | 0.830139 | 3.474245e-55 | -8.615850e-47 |
| Msa0839560 | Msa1336120 | 0.831601 | 1.522282e-55 | -8.615850e-47 |
| Msa0134610 | Msa1336120 | 0.820660 | 6.098458e-53 | -8.615850e-47 |
| Msa0197230 | Msa1336120 | 0.804105 | 2.533740e-49 | -8.615850e-47 |
| Msa0197420 | Msa1336120 | 0.816242 | 6.116107e-52 | -8.615850e-47 |
| Msa0232690 | Msa1336120 | 0.808299 | 3.315195e-50 | -8.615850e-47 |
| Msa1232710 | Msa1336120 | 0.837583 | 4.771644e-57 | -8.615850e-47 |
| Msa1252190 | Msa1336120 | 0.821161 | 4.678013e-53 | -8.615850e-47 |
| Msa1253310 | Msa1336120 | 0.807876 | 4.079983e-50 | -8.615850e-47 |
| Msa1268670 | Msa1336120 | 0.804230 | 2.386784e-49 | -8.615850e-47 |
| Msa1306740 | Msa1336120 | 0.806333 | 8.656834e-50 | -8.615850e-47 |
| Msa1307570 | Msa1336120 | 0.839361 | 1.658888e-57 | -8.615850e-47 |
| Msa1313300 | Msa1336120 | 0.840956 | 6.361485e-58 | -8.615850e-47 |
| Msa1336120 | Msa1374550 | 0.801529 | 8.626514e-49 | -8.615850e-47 |
| Msa1336120 | Msa1388820 | 0.804304 | 2.303243e-49 | -8.615850e-47 |
| Msa1336120 | Msa1389950 | 0.821249 | 4.463880e-53 | -8.615850e-47 |
| Msa1336120 | Msa1412350 | 0.829823 | 4.148053e-55 | -8.615850e-47 |
| Msa1336120 | Msa1440590 | 0.801151 | 1.030999e-48 | -8.615850e-47 |
| Msa1336120 | Msa1459380 | 0.805997 | 1.018802e-49 | -8.615850e-47 |
| Msa0410500 | Msa1336120 | 0.817060 | 4.010576e-52 | -8.615850e-47 |
| Msa0422850 | Msa1336120 | 0.803876 | 2.827597e-49 | -8.615850e-47 |
| Msa0422930 | Msa1336120 | 0.800824 | 1.202035e-48 | -8.615850e-47 |
| Msa0475790 | Msa1336120 | 0.829069 | 6.326879e-55 | -8.615850e-47 |
| Msa1010730 | Msa1336120 | 0.803923 | 2.765234e-49 | -8.615850e-47 |
| Msa1012810 | Msa1336120 | 0.812841 | 3.461260e-51 | -8.615850e-47 |
| Msa1030990 | Msa1336120 | 0.819526 | 1.109195e-52 | -8.615850e-47 |
| Msa1031040 | Msa1336120 | 0.826417 | 2.744361e-54 | -8.615850e-47 |
| Msa1037640 | Msa1336120 | 0.807137 | 5.854056e-50 | -8.615850e-47 |
| Msa1037920 | Msa1336120 | 0.804263 | 2.349822e-49 | -8.615850e-47 |
| Msa1063950 | Msa1336120 | 0.812212 | 4.748575e-51 | -8.615850e-47 |
| Msa0239190 | Msa1336120 | 0.817750 | 2.803832e-52 | -8.615850e-47 |
| Msa0239570 | Msa1336120 | 0.805258 | 1.456180e-49 | -8.615850e-47 |
| Msa0267110 | Msa1336120 | 0.810308 | 1.229481e-50 | -8.615850e-47 |
| Msa0274680 | Msa1336120 | 0.814731 | 1.326609e-51 | -8.615850e-47 |
| Msa0289890 | Msa1336120 | 0.800183 | 1.623897e-48 | -8.615850e-47 |
| Msa0292400 | Msa1336120 | 0.809492 | 1.841972e-50 | -8.615850e-47 |
| Msa0318700 | Msa1336120 | 0.825976 | 3.494521e-54 | -8.615850e-47 |
| Msa0349710 | Msa1336120 | 0.814173 | 1.762610e-51 | -8.615850e-47 |
| Msa1129980 | Msa1336120 | 0.814502 | 1.491472e-51 | -8.615850e-47 |
| Msa1164660 | Msa1336120 | 0.818189 | 2.232361e-52 | -8.615850e-47 |
| Msa1173330 | Msa1336120 | 0.821707 | 3.498225e-53 | -8.615850e-47 |
| Msa1200370 | Msa1336120 | 0.809337 | 1.989237e-50 | -8.615850e-47 |
| Msa0527860 | Msa1336120 | 0.815376 | 9.542980e-52 | -8.615850e-47 |
| Msa0564030 | Msa1336120 | 0.838723 | 2.427816e-57 | -8.615850e-47 |
| Msa0574890 | Msa1336120 | 0.828616 | 8.143335e-55 | -8.615850e-47 |
| Msa0576690 | Msa1336120 | 0.809566 | 1.775848e-50 | -8.615850e-47 |
| Msa0577390 | Msa1336120 | 0.820763 | 5.776236e-53 | -8.615850e-47 |
| Msa0582450 | Msa1336120 | 0.825811 | 3.824461e-54 | -8.615850e-47 |
| Msa0586190 | Msa1336120 | 0.824430 | 8.107960e-54 | -8.615850e-47 |
| Msa0909230 | Msa1336120 | 0.807513 | 4.873395e-50 | -8.615850e-47 |
| Msa0930780 | Msa1336120 | 0.831417 | 1.689575e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1336120 | MtrunA17_Chr7g0266231 | 96.667 | 360 | 11 | 1 | 1 | 360 | 1 | 359 | 0.0 | 705 |
| Msa1336120 | MtrunA17_Chr1g0178661 | 74.095 | 359 | 74 | 6 | 8 | 360 | 1 | 346 | 1.74e-152 | 439 |
| Msa1336120 | MtrunA17_Chr3g0100581 | 63.717 | 226 | 80 | 1 | 135 | 360 | 54 | 277 | 3.56e-77 | 244 |
| Msa1336120 | MtrunA17_Chr5g0445051 | 61.611 | 211 | 78 | 2 | 151 | 360 | 74 | 282 | 1.32e-75 | 240 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1336120 | AT2G36250.2 | 71.910 | 356 | 79 | 5 | 8 | 360 | 5 | 342 | 6.47e-154 | 442 |
| Msa1336120 | AT2G36250.3 | 71.910 | 356 | 79 | 5 | 8 | 360 | 5 | 342 | 6.47e-154 | 442 |
| Msa1336120 | AT2G36250.1 | 71.910 | 356 | 79 | 5 | 8 | 360 | 5 | 342 | 6.47e-154 | 442 |
| Msa1336120 | AT3G52750.4 | 67.218 | 363 | 97 | 7 | 8 | 369 | 5 | 346 | 6.68e-146 | 417 |
| Msa1336120 | AT3G52750.3 | 68.644 | 354 | 90 | 6 | 8 | 360 | 5 | 338 | 1.67e-144 | 418 |
| Msa1336120 | AT3G52750.2 | 68.644 | 354 | 90 | 6 | 8 | 360 | 5 | 338 | 1.67e-144 | 418 |
| Msa1336120 | AT3G52750.1 | 68.644 | 354 | 90 | 6 | 8 | 360 | 5 | 338 | 1.67e-144 | 418 |
| Msa1336120 | AT2G36250.4 | 85.985 | 264 | 34 | 1 | 97 | 360 | 1 | 261 | 1.87e-141 | 408 |
| Msa1336120 | AT5G55280.1 | 57.736 | 265 | 100 | 4 | 95 | 359 | 42 | 294 | 3.06e-75 | 239 |
Find 129 sgRNAs with CRISPR-Local
Find 242 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAGGTTTCAGAAATATTATT+TGG | 0.197410 | tig0000801:+386 | None:intergenic |
| TCAATACAAGAGGCGGTTTA+TGG | 0.232431 | tig0000801:-2539 | Msa1336120:CDS |
| TAATGCAGGTTCTTCACTTA+TGG | 0.232861 | tig0000801:-490 | Msa1336120:CDS |
| GGACCAACACTGTGCGAATT+TGG | 0.235876 | tig0000801:+2965 | None:intergenic |
| AAAATTAATGAAAATAAGTT+TGG | 0.239550 | tig0000801:-3046 | Msa1336120:CDS |
| GCAGGGGTGCTTGCTGTTAA+TGG | 0.239998 | tig0000801:-3121 | Msa1336120:CDS |
| AAGCACCCCTGCTGAATTTC+TGG | 0.255111 | tig0000801:+3132 | None:intergenic |
| TGTCATTTGGAATAACTATC+AGG | 0.257169 | tig0000801:+1050 | None:intergenic |
| AGATTGAATGCTTCAGTTAC+AGG | 0.271861 | tig0000801:+998 | None:intergenic |
| GTTATTGGTGTGGGTGGTGG+TGG | 0.281129 | tig0000801:-2761 | Msa1336120:CDS |
| CCTGAGATTTCGATGCTTAG+AGG | 0.292393 | tig0000801:-2905 | Msa1336120:CDS |
| CGATGAATGGTGTGGAGTTT+TGG | 0.299318 | tig0000801:-2706 | Msa1336120:CDS |
| GAAGCAAAGATTAAGGTTAT+TGG | 0.303876 | tig0000801:-2776 | Msa1336120:CDS |
| TTATAATGAAGCAAAGATTA+AGG | 0.307633 | tig0000801:-2783 | Msa1336120:CDS |
| GGCGGTTTATGGAGCTGATA+TGG | 0.325227 | tig0000801:-2528 | Msa1336120:CDS |
| GATTGTTAATACTGATGTTC+AGG | 0.330888 | tig0000801:-2684 | Msa1336120:CDS |
| TGCCGATGTTAGAGCTATAA+TGG | 0.340769 | tig0000801:-514 | Msa1336120:CDS |
| AAGGTTATTGGTGTGGGTGG+TGG | 0.356161 | tig0000801:-2764 | Msa1336120:CDS |
| AATGCAGGTTCTTCACTTAT+GGG | 0.360231 | tig0000801:-489 | Msa1336120:CDS |
| GCTGGAATGGGTGGAGGAAC+TGG | 0.363731 | tig0000801:-1223 | Msa1336120:CDS |
| TATGCATGCAAACTGCTATT+GGG | 0.365159 | tig0000801:-448 | Msa1336120:CDS |
| CAAAGTGTGGAAGATGCAAT+TGG | 0.365810 | tig0000801:+3246 | None:intergenic |
| TGGCATTTCTGATATTATTA+CGG | 0.367696 | tig0000801:-945 | Msa1336120:intron |
| GCAGTAAGCAACTTGTCATT+TGG | 0.370958 | tig0000801:+1037 | None:intergenic |
| CATGCACACTTCAAAATTCA+TGG | 0.371959 | tig0000801:-140 | Msa1336120:three_prime_UTR |
| ACAACCCCTTTCTCGTTTGA+AGG | 0.376860 | tig0000801:-1133 | Msa1336120:CDS |
| GGAATTCGCAGGTGCAAAAC+AGG | 0.392685 | tig0000801:+3153 | None:intergenic |
| GTATGCATGCAAACTGCTAT+TGG | 0.393236 | tig0000801:-449 | Msa1336120:CDS |
| GTGATACTCAAATTATATAT+AGG | 0.400748 | tig0000801:-330 | Msa1336120:three_prime_UTR |
| GGTGCAGCTCCGGTTATTGC+TGG | 0.401104 | tig0000801:-1196 | Msa1336120:CDS |
| TTTGGGTCAAATAGAAGATC+TGG | 0.401877 | tig0000801:+404 | None:intergenic |
| ATGGATTGAAGACGATGTAT+TGG | 0.409763 | tig0000801:+3509 | None:intergenic |
| GGTATCAACATTGTCTCTTA+AGG | 0.417783 | tig0000801:+1072 | None:intergenic |
| CGTGTAAGCTCTTGACCAAT+TGG | 0.419230 | tig0000801:+2623 | None:intergenic |
| TGGATTGAAGACGATGTATT+GGG | 0.426517 | tig0000801:+3510 | None:intergenic |
| CGCCTGTCAATTCTGAGAAC+CGG | 0.428266 | tig0000801:-2649 | Msa1336120:CDS |
| TGCTGGTATCACAAAGTCAA+TGG | 0.432173 | tig0000801:-1179 | Msa1336120:CDS |
| AACTGGCACTGGTGCAGCTC+CGG | 0.436776 | tig0000801:-1206 | Msa1336120:CDS |
| GAGTTTCGATACTGTAAGAA+TGG | 0.438083 | tig0000801:-3179 | Msa1336120:CDS |
| AGGTTTCAGAAATATTATTT+GGG | 0.439352 | tig0000801:+387 | None:intergenic |
| TGATACGCTAATATAACATT+TGG | 0.444718 | tig0000801:+303 | None:intergenic |
| GCCGTCCTTCAAACGAGAAA+GGG | 0.446918 | tig0000801:+1128 | None:intergenic |
| TTGTTTCAAGTGAAGTCGAC+AGG | 0.449273 | tig0000801:-2992 | Msa1336120:CDS |
| CAAGAGCTTACACGAGGTCT+TGG | 0.455364 | tig0000801:-2614 | Msa1336120:CDS |
| ATGGGTGGAGGAACTGGCAC+TGG | 0.457183 | tig0000801:-1217 | Msa1336120:CDS |
| CAACTCTACGCGTCCGAGAA+AGG | 0.457651 | tig0000801:-2861 | Msa1336120:CDS |
| TCTTGGTGCTGGTGGTAATC+CGG | 0.460691 | tig0000801:-2597 | Msa1336120:CDS |
| CCACCGGACATATCCTTTCT+CGG | 0.465397 | tig0000801:+2848 | None:intergenic |
| TCTGAGAACCGGTTGCCAAT+TGG | 0.466227 | tig0000801:-2638 | Msa1336120:CDS |
| GGGTCTTTGCTATGATGATA+AGG | 0.472830 | tig0000801:+2944 | None:intergenic |
| CGCCGTCCTTCAAACGAGAA+AGG | 0.476604 | tig0000801:+1127 | None:intergenic |
| TCTCGTTTGAAGGACGGCGG+AGG | 0.481078 | tig0000801:-1123 | Msa1336120:CDS |
| GCTCTTGACCAATTGGCAAC+CGG | 0.487109 | tig0000801:+2630 | None:intergenic |
| TTATTGGTGTGGGTGGTGGT+GGG | 0.491634 | tig0000801:-2760 | Msa1336120:CDS |
| GCTATCCTCTAAAACAACTT+TGG | 0.491966 | tig0000801:+244 | None:intergenic |
| TGTTATATTAGCGTATCATA+TGG | 0.492609 | tig0000801:-298 | Msa1336120:three_prime_UTR |
| TCGTCTTCAATCCATTCCTC+AGG | 0.492978 | tig0000801:-3501 | Msa1336120:intron |
| GATTGAATGCTTCAGTTACA+GGG | 0.493075 | tig0000801:+999 | None:intergenic |
| ATGGGGATAGGAACTGCAAC+TGG | 0.495317 | tig0000801:-471 | Msa1336120:CDS |
| CCCCTTTCTCGTTTGAAGGA+CGG | 0.496549 | tig0000801:-1129 | Msa1336120:CDS |
| CCTCTAAGCATCGAAATCTC+AGG | 0.496744 | tig0000801:+2905 | None:intergenic |
| TTTGTGATACCAGCAATAAC+CGG | 0.498131 | tig0000801:+1187 | None:intergenic |
| CTTAGAGGTGAAGGAAGTAG+TGG | 0.499966 | tig0000801:-2890 | Msa1336120:CDS |
| GCAGCATTCATACCAATCTC+CGG | 0.506208 | tig0000801:+2578 | None:intergenic |
| GCTGAATTTCTGGAATTCGC+AGG | 0.506414 | tig0000801:+3142 | None:intergenic |
| CTCGTTTGAAGGACGGCGGA+GGG | 0.507764 | tig0000801:-1122 | Msa1336120:CDS |
| TGTAACTGAAGCATTCAATC+TGG | 0.508474 | tig0000801:-996 | Msa1336120:CDS |
| TTGTAGGCTGGAATGGGTGG+AGG | 0.510444 | tig0000801:-1229 | Msa1336120:intron |
| AGTGAGTGAGTGAAGGAAAA+CGG | 0.514283 | tig0000801:+3556 | None:intergenic |
| AAAGATTAAGGTTATTGGTG+TGG | 0.515818 | tig0000801:-2771 | Msa1336120:CDS |
| TGGTGGAACCAAAGAAAATG+AGG | 0.520580 | tig0000801:+3586 | None:intergenic |
| GGTTCTTCACTTATGGGGAT+AGG | 0.522575 | tig0000801:-483 | Msa1336120:CDS |
| GCGAATTCCAGAAATTCAGC+AGG | 0.523863 | tig0000801:-3139 | Msa1336120:CDS |
| TCCGGTGGAGATGTGGTCGA+AGG | 0.524405 | tig0000801:-2833 | Msa1336120:CDS |
| TGAAGGAAAACGGTGATAGA+TGG | 0.525094 | tig0000801:+3566 | None:intergenic |
| AAGATTAAGGTTATTGGTGT+GGG | 0.526325 | tig0000801:-2770 | Msa1336120:CDS |
| ATTTCGATGCTTAGAGGTGA+AGG | 0.527070 | tig0000801:-2899 | Msa1336120:CDS |
| GCTGGTATCACAAAGTCAAT+GGG | 0.528789 | tig0000801:-1178 | Msa1336120:CDS |
| TGGAGAAGCACACATGTTGA+TGG | 0.536681 | tig0000801:-120 | Msa1336120:three_prime_UTR |
| TGGAGATGTGGTCGAAGGGT+TGG | 0.537479 | tig0000801:-2828 | Msa1336120:CDS |
| GTTATTTAAATGCAGATACC+CGG | 0.548808 | tig0000801:-555 | Msa1336120:intron |
| ATTCTGCGACAAGGTGTTCG+TGG | 0.550129 | tig0000801:-965 | Msa1336120:CDS |
| GTATTATGTAAGCGAACTGT+AGG | 0.550713 | tig0000801:+367 | None:intergenic |
| TTTGCTTCATTATAATTACT+CGG | 0.555041 | tig0000801:+2791 | None:intergenic |
| AAAATGAGAAATTCAAAGTG+TGG | 0.559812 | tig0000801:+3233 | None:intergenic |
| GGAAGAAAGAACCTGAGGAA+TGG | 0.563392 | tig0000801:+3490 | None:intergenic |
| AACCGGTTCTCAGAATTGAC+AGG | 0.563659 | tig0000801:+2647 | None:intergenic |
| GTCATTTGGAATAACTATCA+GGG | 0.565686 | tig0000801:+1051 | None:intergenic |
| CGTCCGAGAAAGGATATGTC+CGG | 0.566891 | tig0000801:-2851 | Msa1336120:CDS |
| CATTTCGTTATCAAGAACAA+TGG | 0.570737 | tig0000801:-3643 | Msa1336120:five_prime_UTR |
| AAAGTGTGGAAGATGCAATT+GGG | 0.571201 | tig0000801:+3247 | None:intergenic |
| CCCTTCGACCACATCTCCAC+CGG | 0.573793 | tig0000801:+2832 | None:intergenic |
| CTTACACGAGGTCTTGGTGC+TGG | 0.574946 | tig0000801:-2608 | Msa1336120:CDS |
| GGATATGTCCGGTGGAGATG+TGG | 0.576767 | tig0000801:-2840 | Msa1336120:CDS |
| GCTGGTGGTAATCCGGAGAT+TGG | 0.577631 | tig0000801:-2590 | Msa1336120:CDS |
| TTAAATGCAGATACCCGGGT+TGG | 0.583340 | tig0000801:-550 | Msa1336120:intron |
| CAAATAGAAGATCTGGACTC+AGG | 0.586716 | tig0000801:+411 | None:intergenic |
| AGAGCTATAATGGCTAATGC+AGG | 0.588135 | tig0000801:-504 | Msa1336120:CDS |
| ACACGAGGTCTTGGTGCTGG+TGG | 0.589485 | tig0000801:-2605 | Msa1336120:CDS |
| ATGCAGGTTCTTCACTTATG+GGG | 0.590064 | tig0000801:-488 | Msa1336120:CDS |
| ATTAAGGTTATTGGTGTGGG+TGG | 0.596357 | tig0000801:-2767 | Msa1336120:CDS |
| AGCCATTATAGCTCTAACAT+CGG | 0.596517 | tig0000801:+512 | None:intergenic |
| AAGTAAAGAGTCAATACAAG+AGG | 0.601747 | tig0000801:-2549 | Msa1336120:CDS |
| TTACCAAATTCGCACAGTGT+TGG | 0.602529 | tig0000801:-2968 | Msa1336120:CDS |
| TCAATGGGTATACTAACTGT+TGG | 0.603720 | tig0000801:-1163 | Msa1336120:CDS |
| TCGAGTGAGTGAGTGAGTGA+AGG | 0.608469 | tig0000801:+3549 | None:intergenic |
| GGTGTTAACAACAGAAAGTG+TGG | 0.611534 | tig0000801:-3016 | Msa1336120:CDS |
| TAAAGAGTCAATACAAGAGG+CGG | 0.618334 | tig0000801:-2546 | Msa1336120:CDS |
| AGGGCAGTTCAAGCACAAGA+AGG | 0.618926 | tig0000801:-1103 | Msa1336120:CDS |
| AAAGTCGACATTCACCAACC+CGG | 0.625860 | tig0000801:+536 | None:intergenic |
| ATGATTGAGAGTTCGATGAA+TGG | 0.627081 | tig0000801:-2719 | Msa1336120:CDS |
| CTTTCTCGTTTGAAGGACGG+CGG | 0.630792 | tig0000801:-1126 | Msa1336120:CDS |
| TTATTTAAATGCAGATACCC+GGG | 0.634762 | tig0000801:-554 | Msa1336120:intron |
| CCGGTGGAGATGTGGTCGAA+GGG | 0.635066 | tig0000801:-2832 | Msa1336120:CDS |
| CCGTCCTTCAAACGAGAAAG+GGG | 0.635157 | tig0000801:+1129 | None:intergenic |
| AAGTCGACATTCACCAACCC+GGG | 0.639911 | tig0000801:+537 | None:intergenic |
| CGAATTCCAGAAATTCAGCA+GGG | 0.647094 | tig0000801:-3138 | Msa1336120:CDS |
| ATGCATGCAAACTGCTATTG+GGG | 0.647436 | tig0000801:-447 | Msa1336120:CDS |
| CCGAGAAAGGATATGTCCGG+TGG | 0.651747 | tig0000801:-2848 | Msa1336120:CDS |
| GGTGGAACCAAAGAAAATGA+GGG | 0.652627 | tig0000801:+3587 | None:intergenic |
| TGTTTCAAGTGAAGTCGACA+GGG | 0.654076 | tig0000801:-2991 | Msa1336120:CDS |
| TGAGAGTTCGATGAATGGTG+TGG | 0.654606 | tig0000801:-2714 | Msa1336120:CDS |
| AGGAAAACGGTGATAGATGG+TGG | 0.657617 | tig0000801:+3569 | None:intergenic |
| GGGGTGCTTGCTGTTAATGG+AGG | 0.662779 | tig0000801:-3118 | Msa1336120:CDS |
| GTGTGCATGTCTGTAACTGA+AGG | 0.667543 | tig0000801:-276 | Msa1336120:three_prime_UTR |
| ATTGAATGCTTCAGTTACAG+GGG | 0.680898 | tig0000801:+1000 | None:intergenic |
| GAATTCCAGAAATTCAGCAG+GGG | 0.694289 | tig0000801:-3137 | Msa1336120:CDS |
| GCTGATGATATTCTGCGACA+AGG | 0.719167 | tig0000801:-974 | Msa1336120:CDS |
| ATTGGTCAAGAGCTTACACG+AGG | 0.768210 | tig0000801:-2620 | Msa1336120:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAATTGAGATATTATTTA+GGG | + | tig0000801:384-403 | None:intergenic | 10.0% |
| !! | TAATAATTGAGATATTATTT+AGG | + | tig0000801:385-404 | None:intergenic | 10.0% |
| !!! | TTATTATTATTTTCATTAAC+AGG | - | tig0000801:408-427 | Msa1336120:exon | 10.0% |
| !! | AAAATTAATGAAAATAAGTT+TGG | - | tig0000801:643-662 | Msa1336120:intron | 10.0% |
| !!! | ATTTTTAAATTAGTTTTATG+TGG | - | tig0000801:2258-2277 | Msa1336120:intron | 10.0% |
| !! | ATTTAAATAACATAATTAAC+AGG | + | tig0000801:3125-3144 | None:intergenic | 10.0% |
| !! | AAACTAATTTAAAAATGCAT+AGG | + | tig0000801:2254-2273 | None:intergenic | 15.0% |
| !!! | AAATCAAAACTTATTTTTGT+AGG | - | tig0000801:2444-2463 | Msa1336120:intron | 15.0% |
| !! | TTAGTTAATACAAAAACTAA+TGG | + | tig0000801:2982-3001 | None:intergenic | 15.0% |
| !! | ATCCAAAAAAAACAATTTAA+AGG | - | tig0000801:3503-3522 | Msa1336120:five_prime_UTR | 15.0% |
| !!! | AACCTTTAAATTGTTTTTTT+TGG | + | tig0000801:3508-3527 | None:intergenic | 15.0% |
| !! | ATTAAAGCGAATTAATTGTA+GGG | + | tig0000801:322-341 | None:intergenic | 20.0% |
| !! | TAATTAAGTAACTAACTAAC+TGG | + | tig0000801:350-369 | None:intergenic | 20.0% |
| !!! | TGAAAATAAGTTTGGATTTT+CGG | - | tig0000801:651-670 | Msa1336120:intron | 20.0% |
| !! | TTTGCTTCATTATAATTACT+CGG | + | tig0000801:901-920 | None:intergenic | 20.0% |
| !! | TTATAATGAAGCAAAGATTA+AGG | - | tig0000801:906-925 | Msa1336120:intron | 20.0% |
| !!! | CTACATTACAGTTTTATATT+TGG | - | tig0000801:1230-1249 | Msa1336120:intron | 20.0% |
| !! | TTAAATAATACTAGACTGTT+GGG | - | tig0000801:1668-1687 | Msa1336120:intron | 20.0% |
| !! | TTTATTTAAGTGAAGAAGTT+TGG | + | tig0000801:1785-1804 | None:intergenic | 20.0% |
| !!! | TTCTTCTTCTAAAATTCAAA+AGG | + | tig0000801:2288-2307 | None:intergenic | 20.0% |
| !! | AGGTTTCAGAAATATTATTT+GGG | + | tig0000801:3305-3324 | None:intergenic | 20.0% |
| !! | TAGGTTTCAGAAATATTATT+TGG | + | tig0000801:3306-3325 | None:intergenic | 20.0% |
| !! | GTGATACTCAAATTATATAT+AGG | - | tig0000801:3359-3378 | Msa1336120:intron | 20.0% |
| ! | GATTAAAGCGAATTAATTGT+AGG | + | tig0000801:323-342 | None:intergenic | 25.0% |
| ! | AAAATGAGAAATTCAAAGTG+TGG | + | tig0000801:459-478 | None:intergenic | 25.0% |
| !! | GAAAATAAGTTTGGATTTTC+GGG | - | tig0000801:652-671 | Msa1336120:intron | 25.0% |
| ! | ATATAAATCATGTCTACACA+TGG | + | tig0000801:1280-1299 | None:intergenic | 25.0% |
| ! | AGAATAGAGTAATACATGAT+TGG | - | tig0000801:1353-1372 | Msa1336120:intron | 25.0% |
| ! | CTTAAATAATACTAGACTGT+TGG | - | tig0000801:1667-1686 | Msa1336120:intron | 25.0% |
| ! | ACAAACGTATCATTAATATC+AGG | - | tig0000801:1747-1766 | Msa1336120:intron | 25.0% |
| ! | TCACTTAAATAAAATCAACC+CGG | - | tig0000801:1792-1811 | Msa1336120:intron | 25.0% |
| !! | CGAAGTTGTTGTATATTTTA+AGG | + | tig0000801:1875-1894 | None:intergenic | 25.0% |
| !! | GAAGCTCATTTTATGTTAAA+AGG | - | tig0000801:1989-2008 | Msa1336120:intron | 25.0% |
| !! | TAATTTAAAGTGACATCCTA+GGG | + | tig0000801:2123-2142 | None:intergenic | 25.0% |
| !! | ATAATTTAAAGTGACATCCT+AGG | + | tig0000801:2124-2143 | None:intergenic | 25.0% |
| !!! | TATGTGGATTTTTCAGAATT+GGG | - | tig0000801:2364-2383 | Msa1336120:intron | 25.0% |
| ! | TGGCATTTCTGATATTATTA+CGG | - | tig0000801:2744-2763 | Msa1336120:CDS | 25.0% |
| ! | TTTCTGATATTATTACGGTA+TGG | - | tig0000801:2749-2768 | Msa1336120:CDS | 25.0% |
| ! | AACTAAACAAAGCAACAAAA+GGG | + | tig0000801:2809-2828 | None:intergenic | 25.0% |
| ! | AAACTAAACAAAGCAACAAA+AGG | + | tig0000801:2810-2829 | None:intergenic | 25.0% |
| ! | TCTGATTGTATAGTAGTAAA+AGG | - | tig0000801:2843-2862 | Msa1336120:CDS | 25.0% |
| ! | AACGAATAAAGACACAATTA+TGG | + | tig0000801:2884-2903 | None:intergenic | 25.0% |
| !!! | TTTATTCGTTTTGACATATC+CGG | - | tig0000801:2894-2913 | Msa1336120:CDS | 25.0% |
| !!! | TTTTTTATCAGTTCTAGATG+CGG | - | tig0000801:3012-3031 | Msa1336120:CDS | 25.0% |
| ! | TGATACGCTAATATAACATT+TGG | + | tig0000801:3389-3408 | None:intergenic | 25.0% |
| ! | TGTTATATTAGCGTATCATA+TGG | - | tig0000801:3391-3410 | Msa1336120:intron | 25.0% |
| CATTTCGTTATCAAGAACAA+TGG | - | tig0000801:46-65 | Msa1336120:three_prime_UTR | 30.0% | |
| ! | AACAAAACCCTCATTTTCTT+TGG | - | tig0000801:95-114 | Msa1336120:three_prime_UTR | 30.0% |
| GAAGCAAAGATTAAGGTTAT+TGG | - | tig0000801:913-932 | Msa1336120:intron | 30.0% | |
| AAAGATTAAGGTTATTGGTG+TGG | - | tig0000801:918-937 | Msa1336120:intron | 30.0% | |
| AAGATTAAGGTTATTGGTGT+GGG | - | tig0000801:919-938 | Msa1336120:intron | 30.0% | |
| GATTGTTAATACTGATGTTC+AGG | - | tig0000801:1005-1024 | Msa1336120:CDS | 30.0% | |
| AAGTAAAGAGTCAATACAAG+AGG | - | tig0000801:1140-1159 | Msa1336120:CDS | 30.0% | |
| TAGAGTAATACATGATTGGT+AGG | - | tig0000801:1357-1376 | Msa1336120:intron | 30.0% | |
| TAATACATGATTGGTAGGAA+AGG | - | tig0000801:1362-1381 | Msa1336120:intron | 30.0% | |
| CAATGCATGATAGAGTATAA+AGG | + | tig0000801:1526-1545 | None:intergenic | 30.0% | |
| CACTTAAATAAAATCAACCC+GGG | - | tig0000801:1793-1812 | Msa1336120:intron | 30.0% | |
| TTCGACAAATAAATGAGTGA+AGG | + | tig0000801:2023-2042 | None:intergenic | 30.0% | |
| TTTCGAAATATCATTTCCCT+AGG | - | tig0000801:2104-2123 | Msa1336120:intron | 30.0% | |
| TGCAATTTCAAATACTGTGA+TGG | - | tig0000801:2177-2196 | Msa1336120:intron | 30.0% | |
| !! | ATTTTAAGTCAATGCCTATG+TGG | - | tig0000801:2348-2367 | Msa1336120:intron | 30.0% |
| ! | CAATTCTGAAAAATCCACAT+AGG | + | tig0000801:2365-2384 | None:intergenic | 30.0% |
| !! | CTATGTGGATTTTTCAGAAT+TGG | - | tig0000801:2363-2382 | Msa1336120:intron | 30.0% |
| AATTCCAAATTGTTAGTCGT+TGG | - | tig0000801:2402-2421 | Msa1336120:intron | 30.0% | |
| TATACCAACGACTAACAATT+TGG | + | tig0000801:2409-2428 | None:intergenic | 30.0% | |
| !!! | CAAAACTTATTTTTGTAGGC+TGG | - | tig0000801:2448-2467 | Msa1336120:intron | 30.0% |
| !!! | TTATTTTTGTAGGCTGGAAT+GGG | - | tig0000801:2454-2473 | Msa1336120:intron | 30.0% |
| ! | GTCATTTGGAATAACTATCA+GGG | + | tig0000801:2641-2660 | None:intergenic | 30.0% |
| ! | TGTCATTTGGAATAACTATC+AGG | + | tig0000801:2642-2661 | None:intergenic | 30.0% |
| AAAAACTCAACAACCAAATG+TGG | + | tig0000801:2932-2951 | None:intergenic | 30.0% | |
| GTTATTTAAATGCAGATACC+CGG | - | tig0000801:3134-3153 | Msa1336120:CDS | 30.0% | |
| TTATTTAAATGCAGATACCC+GGG | - | tig0000801:3135-3154 | Msa1336120:CDS | 30.0% | |
| !!! | ATGAGGGTTTTGTTACTTCA+CGG | + | tig0000801:89-108 | None:intergenic | 35.0% |
| TGGATTGAAGACGATGTATT+GGG | + | tig0000801:182-201 | None:intergenic | 35.0% | |
| ! | ATGGATTGAAGACGATGTAT+TGG | + | tig0000801:183-202 | None:intergenic | 35.0% |
| AAAGTGTGGAAGATGCAATT+GGG | + | tig0000801:445-464 | None:intergenic | 35.0% | |
| GAGTTTCGATACTGTAAGAA+TGG | - | tig0000801:510-529 | Msa1336120:CDS | 35.0% | |
| !!! | TCATAGCAAAGACCCTTTTT+TGG | - | tig0000801:753-772 | Msa1336120:intron | 35.0% |
| CAGGATGAAGATCCAAAAAA+GGG | + | tig0000801:768-787 | None:intergenic | 35.0% | |
| TCAGGATGAAGATCCAAAAA+AGG | + | tig0000801:769-788 | None:intergenic | 35.0% | |
| ATGATTGAGAGTTCGATGAA+TGG | - | tig0000801:970-989 | Msa1336120:CDS | 35.0% | |
| TAAAGAGTCAATACAAGAGG+CGG | - | tig0000801:1143-1162 | Msa1336120:CDS | 35.0% | |
| TTGGTAGGAAAGGTAATCTA+TGG | - | tig0000801:1372-1391 | Msa1336120:intron | 35.0% | |
| CTTGAATACTACCATACCAA+AGG | + | tig0000801:1482-1501 | None:intergenic | 35.0% | |
| !!! | ACTGTTGGGTTTTTTGTTGA+GGG | - | tig0000801:1682-1701 | Msa1336120:intron | 35.0% |
| AAATGAGCTTCCAATTGAAG+TGG | + | tig0000801:1980-1999 | None:intergenic | 35.0% | |
| TTCAGAATTGGGAATAGACA+CGG | - | tig0000801:2375-2394 | Msa1336120:intron | 35.0% | |
| !!! | CTTATTTTTGTAGGCTGGAA+TGG | - | tig0000801:2453-2472 | Msa1336120:intron | 35.0% |
| TTTGTGATACCAGCAATAAC+CGG | + | tig0000801:2505-2524 | None:intergenic | 35.0% | |
| TCAATGGGTATACTAACTGT+TGG | - | tig0000801:2526-2545 | Msa1336120:CDS | 35.0% | |
| GGTATCAACATTGTCTCTTA+AGG | + | tig0000801:2620-2639 | None:intergenic | 35.0% | |
| ATTGAATGCTTCAGTTACAG+GGG | + | tig0000801:2692-2711 | None:intergenic | 35.0% | |
| GATTGAATGCTTCAGTTACA+GGG | + | tig0000801:2693-2712 | None:intergenic | 35.0% | |
| AGATTGAATGCTTCAGTTAC+AGG | + | tig0000801:2694-2713 | None:intergenic | 35.0% | |
| ! | TGTAACTGAAGCATTCAATC+TGG | - | tig0000801:2693-2712 | Msa1336120:CDS | 35.0% |
| TAAACAAAGCAACAAAAGGG+AGG | + | tig0000801:2806-2825 | None:intergenic | 35.0% | |
| !! | AGCCATTATAGCTCTAACAT+CGG | + | tig0000801:3180-3199 | None:intergenic | 35.0% |
| TAATGCAGGTTCTTCACTTA+TGG | - | tig0000801:3199-3218 | Msa1336120:exon | 35.0% | |
| AATGCAGGTTCTTCACTTAT+GGG | - | tig0000801:3200-3219 | Msa1336120:exon | 35.0% | |
| TATGCATGCAAACTGCTATT+GGG | - | tig0000801:3241-3260 | Msa1336120:five_prime_UTR | 35.0% | |
| TTTGGGTCAAATAGAAGATC+TGG | + | tig0000801:3288-3307 | None:intergenic | 35.0% | |
| GTATTATGTAAGCGAACTGT+AGG | + | tig0000801:3325-3344 | None:intergenic | 35.0% | |
| !!! | TACAGCCAAAGTTGTTTTAG+AGG | - | tig0000801:3440-3459 | Msa1336120:intron | 35.0% |
| !! | GCTATCCTCTAAAACAACTT+TGG | + | tig0000801:3448-3467 | None:intergenic | 35.0% |
| !!! | AAGTTGTTTTAGAGGATAGC+TGG | - | tig0000801:3448-3467 | Msa1336120:intron | 35.0% |
| CATGCACACTTCAAAATTCA+TGG | - | tig0000801:3549-3568 | Msa1336120:five_prime_UTR | 35.0% | |
| GGTGGAACCAAAGAAAATGA+GGG | + | tig0000801:105-124 | None:intergenic | 40.0% | |
| TGGTGGAACCAAAGAAAATG+AGG | + | tig0000801:106-125 | None:intergenic | 40.0% | |
| TGAAGGAAAACGGTGATAGA+TGG | + | tig0000801:126-145 | None:intergenic | 40.0% | |
| AGTGAGTGAGTGAAGGAAAA+CGG | + | tig0000801:136-155 | None:intergenic | 40.0% | |
| GAAGCGTAATGAGAATTGAG+AGG | + | tig0000801:223-242 | None:intergenic | 40.0% | |
| CAAAGTGTGGAAGATGCAAT+TGG | + | tig0000801:446-465 | None:intergenic | 40.0% | |
| CGAATTCCAGAAATTCAGCA+GGG | - | tig0000801:551-570 | Msa1336120:intron | 40.0% | |
| GAATTCCAGAAATTCAGCAG+GGG | - | tig0000801:552-571 | Msa1336120:intron | 40.0% | |
| GGTGTTAACAACAGAAAGTG+TGG | - | tig0000801:673-692 | Msa1336120:intron | 40.0% | |
| ! | TTGTTTCAAGTGAAGTCGAC+AGG | - | tig0000801:697-716 | Msa1336120:intron | 40.0% |
| ! | TGTTTCAAGTGAAGTCGACA+GGG | - | tig0000801:698-717 | Msa1336120:intron | 40.0% |
| TTACCAAATTCGCACAGTGT+TGG | - | tig0000801:721-740 | Msa1336120:intron | 40.0% | |
| ! | GGGTCTTTGCTATGATGATA+AGG | + | tig0000801:748-767 | None:intergenic | 40.0% |
| ATTTCGATGCTTAGAGGTGA+AGG | - | tig0000801:790-809 | Msa1336120:intron | 40.0% | |
| ATTAAGGTTATTGGTGTGGG+TGG | - | tig0000801:922-941 | Msa1336120:intron | 40.0% | |
| TCAATACAAGAGGCGGTTTA+TGG | - | tig0000801:1150-1169 | Msa1336120:CDS | 40.0% | |
| CAACCACTTTCCTTCAAACA+TGG | - | tig0000801:1202-1221 | Msa1336120:CDS | 40.0% | |
| TGTAGAACAGCCATGTTTGA+AGG | + | tig0000801:1215-1234 | None:intergenic | 40.0% | |
| ! | GTCTACACATGGTAATGTTC+AGG | + | tig0000801:1269-1288 | None:intergenic | 40.0% |
| GTAATCTATGGTGTAGTGTG+AGG | - | tig0000801:1384-1403 | Msa1336120:intron | 40.0% | |
| TAGGCCTCAATATTCCACAA+AGG | - | tig0000801:1412-1431 | Msa1336120:intron | 40.0% | |
| AGGCCTCAATATTCCACAAA+GGG | - | tig0000801:1413-1432 | Msa1336120:intron | 40.0% | |
| CAACCCTTTGTGGAATATTG+AGG | + | tig0000801:1419-1438 | None:intergenic | 40.0% | |
| TCCACAAAGGGTTGTCTATT+TGG | - | tig0000801:1425-1444 | Msa1336120:intron | 40.0% | |
| ! | TTTTCTGCATGCCTTTGGTA+TGG | - | tig0000801:1468-1487 | Msa1336120:intron | 40.0% |
| !!! | GACTGTTGGGTTTTTTGTTG+AGG | - | tig0000801:1681-1700 | Msa1336120:intron | 40.0% |
| !!! | CTGTTGGGTTTTTTGTTGAG+GGG | - | tig0000801:1683-1702 | Msa1336120:intron | 40.0% |
| !!! | TGTTGGGTTTTTTGTTGAGG+GGG | - | tig0000801:1684-1703 | Msa1336120:intron | 40.0% |
| TGTTGAGGGGGGTAATTAAT+AGG | - | tig0000801:1696-1715 | Msa1336120:intron | 40.0% | |
| GTTGAGGGGGGTAATTAATA+GGG | - | tig0000801:1697-1716 | Msa1336120:intron | 40.0% | |
| TTGAGGGGGGTAATTAATAG+GGG | - | tig0000801:1698-1717 | Msa1336120:intron | 40.0% | |
| TGCTGGTATCACAAAGTCAA+TGG | - | tig0000801:2510-2529 | Msa1336120:intron | 40.0% | |
| GCTGGTATCACAAAGTCAAT+GGG | - | tig0000801:2511-2530 | Msa1336120:intron | 40.0% | |
| GCAGTAAGCAACTTGTCATT+TGG | + | tig0000801:2655-2674 | None:intergenic | 40.0% | |
| TCAACAACCAAATGTGGATC+CGG | + | tig0000801:2926-2945 | None:intergenic | 40.0% | |
| !! | ACCTTAAGCTTTGAACCGTA+CGG | + | tig0000801:3080-3099 | None:intergenic | 40.0% |
| TGCCGATGTTAGAGCTATAA+TGG | - | tig0000801:3175-3194 | Msa1336120:CDS | 40.0% | |
| AGAGCTATAATGGCTAATGC+AGG | - | tig0000801:3185-3204 | Msa1336120:exon | 40.0% | |
| ATGCAGGTTCTTCACTTATG+GGG | - | tig0000801:3201-3220 | Msa1336120:exon | 40.0% | |
| GTATGCATGCAAACTGCTAT+TGG | - | tig0000801:3240-3259 | Msa1336120:five_prime_UTR | 40.0% | |
| ATGCATGCAAACTGCTATTG+GGG | - | tig0000801:3242-3261 | Msa1336120:five_prime_UTR | 40.0% | |
| CAAATAGAAGATCTGGACTC+AGG | + | tig0000801:3281-3300 | None:intergenic | 40.0% | |
| AGGAAAACGGTGATAGATGG+TGG | + | tig0000801:123-142 | None:intergenic | 45.0% | |
| TCGTCTTCAATCCATTCCTC+AGG | - | tig0000801:188-207 | Msa1336120:three_prime_UTR | 45.0% | |
| GGAAGAAAGAACCTGAGGAA+TGG | + | tig0000801:202-221 | None:intergenic | 45.0% | |
| TGAGAGGAAGAAAGAACCTG+AGG | + | tig0000801:207-226 | None:intergenic | 45.0% | |
| !! | GCTGAATTTCTGGAATTCGC+AGG | + | tig0000801:550-569 | None:intergenic | 45.0% |
| GCGAATTCCAGAAATTCAGC+AGG | - | tig0000801:550-569 | Msa1336120:intron | 45.0% | |
| !! | CCTCTAAGCATCGAAATCTC+AGG | + | tig0000801:787-806 | None:intergenic | 45.0% |
| CCTGAGATTTCGATGCTTAG+AGG | - | tig0000801:784-803 | Msa1336120:intron | 45.0% | |
| CTTAGAGGTGAAGGAAGTAG+TGG | - | tig0000801:799-818 | Msa1336120:intron | 45.0% | |
| TGAGAGTTCGATGAATGGTG+TGG | - | tig0000801:975-994 | Msa1336120:CDS | 45.0% | |
| ! | CGATGAATGGTGTGGAGTTT+TGG | - | tig0000801:983-1002 | Msa1336120:CDS | 45.0% |
| ! | AACCGGTTCTCAGAATTGAC+AGG | + | tig0000801:1045-1064 | None:intergenic | 45.0% |
| CGTGTAAGCTCTTGACCAAT+TGG | + | tig0000801:1069-1088 | None:intergenic | 45.0% | |
| ATTGGTCAAGAGCTTACACG+AGG | - | tig0000801:1069-1088 | Msa1336120:CDS | 45.0% | |
| GCAGCATTCATACCAATCTC+CGG | + | tig0000801:1114-1133 | None:intergenic | 45.0% | |
| CAGCCATGTTTGAAGGAAAG+TGG | + | tig0000801:1208-1227 | None:intergenic | 45.0% | |
| GGTGTAGTGTGAGGAGAAAT+AGG | - | tig0000801:1393-1412 | Msa1336120:intron | 45.0% | |
| GCCAAATAGACAACCCTTTG+TGG | + | tig0000801:1429-1448 | None:intergenic | 45.0% | |
| AAGGCATGCAGAAAAGAGCA+CGG | + | tig0000801:1463-1482 | None:intergenic | 45.0% | |
| ! | TGCTCTTTTCTGCATGCCTT+TGG | - | tig0000801:1463-1482 | Msa1336120:intron | 45.0% |
| !!! | GTTGGGTTTTTTGTTGAGGG+GGG | - | tig0000801:1685-1704 | Msa1336120:intron | 45.0% |
| TGAGGGGGGTAATTAATAGG+GGG | - | tig0000801:1699-1718 | Msa1336120:intron | 45.0% | |
| TGCATACATAAGCATGTGCC+CGG | + | tig0000801:1814-1833 | None:intergenic | 45.0% | |
| ! | TTTTTGTAGGCTGGAATGGG+TGG | - | tig0000801:2457-2476 | Msa1336120:intron | 45.0% |
| ACAACCCCTTTCTCGTTTGA+AGG | - | tig0000801:2556-2575 | Msa1336120:CDS | 45.0% | |
| GCTGATGATATTCTGCGACA+AGG | - | tig0000801:2715-2734 | Msa1336120:CDS | 45.0% | |
| AACAACCAAATGTGGATCCG+GGG | + | tig0000801:2924-2943 | None:intergenic | 45.0% | |
| CAACAACCAAATGTGGATCC+GGG | + | tig0000801:2925-2944 | None:intergenic | 45.0% | |
| !! | CGTACGGGGAAAGTATTATC+GGG | + | tig0000801:3064-3083 | None:intergenic | 45.0% |
| !! | CCGTACGGGGAAAGTATTAT+CGG | + | tig0000801:3065-3084 | None:intergenic | 45.0% |
| CCGATAATACTTTCCCCGTA+CGG | - | tig0000801:3062-3081 | Msa1336120:CDS | 45.0% | |
| !! | CTTAAGCTTTGAACCGTACG+GGG | + | tig0000801:3078-3097 | None:intergenic | 45.0% |
| !! | CCTTAAGCTTTGAACCGTAC+GGG | + | tig0000801:3079-3098 | None:intergenic | 45.0% |
| TTAAATGCAGATACCCGGGT+TGG | - | tig0000801:3139-3158 | Msa1336120:CDS | 45.0% | |
| AAAGTCGACATTCACCAACC+CGG | + | tig0000801:3156-3175 | None:intergenic | 45.0% | |
| GGTTCTTCACTTATGGGGAT+AGG | - | tig0000801:3206-3225 | Msa1336120:five_prime_UTR | 45.0% | |
| GTGTGCATGTCTGTAACTGA+AGG | - | tig0000801:3413-3432 | Msa1336120:intron | 45.0% | |
| ! | TGGAGAAGCACACATGTTGA+TGG | - | tig0000801:3569-3588 | Msa1336120:five_prime_UTR | 45.0% |
| !!! | AATTTTTTTCATATTAATTT+AGG | - | tig0000801:1321-1340 | Msa1336120:intron | 5.0% |
| TCGAGTGAGTGAGTGAGTGA+AGG | + | tig0000801:143-162 | None:intergenic | 50.0% | |
| GGAATTCGCAGGTGCAAAAC+AGG | + | tig0000801:539-558 | None:intergenic | 50.0% | |
| AAGCACCCCTGCTGAATTTC+TGG | + | tig0000801:560-579 | None:intergenic | 50.0% | |
| GGACCAACACTGTGCGAATT+TGG | + | tig0000801:727-746 | None:intergenic | 50.0% | |
| CGTCCGAGAAAGGATATGTC+CGG | - | tig0000801:838-857 | Msa1336120:intron | 50.0% | |
| CCACCGGACATATCCTTTCT+CGG | + | tig0000801:844-863 | None:intergenic | 50.0% | |
| AAGGTTATTGGTGTGGGTGG+TGG | - | tig0000801:925-944 | Msa1336120:intron | 50.0% | |
| ! | TTATTGGTGTGGGTGGTGGT+GGG | - | tig0000801:929-948 | Msa1336120:intron | 50.0% |
| ! | CGCCTGTCAATTCTGAGAAC+CGG | - | tig0000801:1040-1059 | Msa1336120:CDS | 50.0% |
| TCTGAGAACCGGTTGCCAAT+TGG | - | tig0000801:1051-1070 | Msa1336120:CDS | 50.0% | |
| GCTCTTGACCAATTGGCAAC+CGG | + | tig0000801:1062-1081 | None:intergenic | 50.0% | |
| CAAGAGCTTACACGAGGTCT+TGG | - | tig0000801:1075-1094 | Msa1336120:CDS | 50.0% | |
| !! | TCTTGGTGCTGGTGGTAATC+CGG | - | tig0000801:1092-1111 | Msa1336120:CDS | 50.0% |
| GGCGGTTTATGGAGCTGATA+TGG | - | tig0000801:1161-1180 | Msa1336120:CDS | 50.0% | |
| GCATACATAAGCATGTGCCC+GGG | + | tig0000801:1813-1832 | None:intergenic | 50.0% | |
| CGTATGGGGACTGATGTACA+AGG | + | tig0000801:1939-1958 | None:intergenic | 50.0% | |
| ACATCAGTCCCCATACGACT+AGG | - | tig0000801:1942-1961 | Msa1336120:intron | 50.0% | |
| TGCCAGCAACCTAGTCGTAT+GGG | + | tig0000801:1954-1973 | None:intergenic | 50.0% | |
| ATGCCAGCAACCTAGTCGTA+TGG | + | tig0000801:1955-1974 | None:intergenic | 50.0% | |
| GCTGGCATCTCCACTTCAAT+TGG | - | tig0000801:1967-1986 | Msa1336120:intron | 50.0% | |
| CCGTCCTTCAAACGAGAAAG+GGG | + | tig0000801:2563-2582 | None:intergenic | 50.0% | |
| CCCCTTTCTCGTTTGAAGGA+CGG | - | tig0000801:2560-2579 | Msa1336120:CDS | 50.0% | |
| GCCGTCCTTCAAACGAGAAA+GGG | + | tig0000801:2564-2583 | None:intergenic | 50.0% | |
| CTTTCTCGTTTGAAGGACGG+CGG | - | tig0000801:2563-2582 | Msa1336120:CDS | 50.0% | |
| AGGGCAGTTCAAGCACAAGA+AGG | - | tig0000801:2586-2605 | Msa1336120:CDS | 50.0% | |
| ! | ATTCTGCGACAAGGTGTTCG+TGG | - | tig0000801:2724-2743 | Msa1336120:CDS | 50.0% |
| TTGACATATCCGGTAGTCCC+CGG | - | tig0000801:2904-2923 | Msa1336120:CDS | 50.0% | |
| CCCGTACGGTTCAAAGCTTA+AGG | - | tig0000801:3076-3095 | Msa1336120:CDS | 50.0% | |
| AAGTCGACATTCACCAACCC+GGG | + | tig0000801:3155-3174 | None:intergenic | 50.0% | |
| ATGGGGATAGGAACTGCAAC+TGG | - | tig0000801:3218-3237 | Msa1336120:five_prime_UTR | 50.0% | |
| !! | GCAGGGGTGCTTGCTGTTAA+TGG | - | tig0000801:568-587 | Msa1336120:intron | 55.0% |
| !! | GGGGTGCTTGCTGTTAATGG+AGG | - | tig0000801:571-590 | Msa1336120:intron | 55.0% |
| CAACTCTACGCGTCCGAGAA+AGG | - | tig0000801:828-847 | Msa1336120:intron | 55.0% | |
| CCGAGAAAGGATATGTCCGG+TGG | - | tig0000801:841-860 | Msa1336120:intron | 55.0% | |
| GGATATGTCCGGTGGAGATG+TGG | - | tig0000801:849-868 | Msa1336120:intron | 55.0% | |
| TGGAGATGTGGTCGAAGGGT+TGG | - | tig0000801:861-880 | Msa1336120:intron | 55.0% | |
| ! | GTTATTGGTGTGGGTGGTGG+TGG | - | tig0000801:928-947 | Msa1336120:intron | 55.0% |
| ! | CTTACACGAGGTCTTGGTGC+TGG | - | tig0000801:1081-1100 | Msa1336120:CDS | 55.0% |
| GCTGGTGGTAATCCGGAGAT+TGG | - | tig0000801:1099-1118 | Msa1336120:CDS | 55.0% | |
| TCCCCATACGACTAGGTTGC+TGG | - | tig0000801:1949-1968 | Msa1336120:intron | 55.0% | |
| GCCAGCAACCTAGTCGTATG+GGG | + | tig0000801:1953-1972 | None:intergenic | 55.0% | |
| TTGTAGGCTGGAATGGGTGG+AGG | - | tig0000801:2460-2479 | Msa1336120:intron | 55.0% | |
| CGCCGTCCTTCAAACGAGAA+AGG | + | tig0000801:2565-2584 | None:intergenic | 55.0% | |
| AATGTGGATCCGGGGACTAC+CGG | + | tig0000801:2916-2935 | None:intergenic | 55.0% | |
| GTAGTCCCCGGATCCACATT+TGG | - | tig0000801:2916-2935 | Msa1336120:CDS | 55.0% | |
| TCCGGTGGAGATGTGGTCGA+AGG | - | tig0000801:856-875 | Msa1336120:intron | 60.0% | |
| CCCTTCGACCACATCTCCAC+CGG | + | tig0000801:860-879 | None:intergenic | 60.0% | |
| CCGGTGGAGATGTGGTCGAA+GGG | - | tig0000801:857-876 | Msa1336120:intron | 60.0% | |
| !! | ACACGAGGTCTTGGTGCTGG+TGG | - | tig0000801:1084-1103 | Msa1336120:CDS | 60.0% |
| GCTGGAATGGGTGGAGGAAC+TGG | - | tig0000801:2466-2485 | Msa1336120:intron | 60.0% | |
| ATGGGTGGAGGAACTGGCAC+TGG | - | tig0000801:2472-2491 | Msa1336120:intron | 60.0% | |
| !! | AACTGGCACTGGTGCAGCTC+CGG | - | tig0000801:2483-2502 | Msa1336120:intron | 60.0% |
| GGTGCAGCTCCGGTTATTGC+TGG | - | tig0000801:2493-2512 | Msa1336120:intron | 60.0% | |
| TCTCGTTTGAAGGACGGCGG+AGG | - | tig0000801:2566-2585 | Msa1336120:CDS | 60.0% | |
| CTCGTTTGAAGGACGGCGGA+GGG | - | tig0000801:2567-2586 | Msa1336120:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0000801 | gene | 41 | 3670 | 41 | ID=Msa1336120;Name=Msa1336120 |
| tig0000801 | mRNA | 41 | 3670 | 41 | ID=Msa1336120-mRNA-1;Parent=Msa1336120;Name=Msa1336120-mRNA-1;_AED=0.00;_eAED=0.00;_QI=247|1|1|1|0.66|0.5|4|369|379 |
| tig0000801 | exon | 41 | 562 | 41 | ID=Msa1336120-mRNA-1:exon:607;Parent=Msa1336120-mRNA-1 |
| tig0000801 | exon | 946 | 1245 | 946 | ID=Msa1336120-mRNA-1:exon:606;Parent=Msa1336120-mRNA-1 |
| tig0000801 | exon | 2517 | 3281 | 2517 | ID=Msa1336120-mRNA-1:exon:605;Parent=Msa1336120-mRNA-1 |
| tig0000801 | exon | 3502 | 3670 | 3502 | ID=Msa1336120-mRNA-1:exon:604;Parent=Msa1336120-mRNA-1 |
| tig0000801 | five_prime_UTR | 3502 | 3670 | 3502 | ID=Msa1336120-mRNA-1:five_prime_utr;Parent=Msa1336120-mRNA-1 |
| tig0000801 | five_prime_UTR | 3204 | 3281 | 3204 | ID=Msa1336120-mRNA-1:five_prime_utr;Parent=Msa1336120-mRNA-1 |
| tig0000801 | CDS | 2517 | 3203 | 2517 | ID=Msa1336120-mRNA-1:cds;Parent=Msa1336120-mRNA-1 |
| tig0000801 | CDS | 946 | 1245 | 946 | ID=Msa1336120-mRNA-1:cds;Parent=Msa1336120-mRNA-1 |
| tig0000801 | CDS | 410 | 562 | 410 | ID=Msa1336120-mRNA-1:cds;Parent=Msa1336120-mRNA-1 |
| tig0000801 | three_prime_UTR | 41 | 409 | 41 | ID=Msa1336120-mRNA-1:three_prime_utr;Parent=Msa1336120-mRNA-1 |
| Gene Sequence |
| Protein sequence |
