AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0715770


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0715770 MtrunA17_Chr5g0403141 97.386 153 4 0 1 153 1 153 1.25e-105 298
Msa0715770 MtrunA17_Chr8g0373951 69.079 152 47 0 2 153 1 152 1.54e-72 214
Msa0715770 MtrunA17_Chr4g0034251 61.842 152 58 0 2 153 15 166 1.45e-52 164
Msa0715770 MtrunA17_Chr4g0009521 39.744 156 90 2 1 153 1 155 2.27e-26 97.4
Msa0715770 MtrunA17_Chr1g0186591 39.735 151 87 3 2 150 1 149 4.14e-26 96.7
Msa0715770 MtrunA17_Chr1g0186551 38.158 152 92 2 2 152 1 151 1.76e-25 95.1
Msa0715770 MtrunA17_Chr4g0028981 36.424 151 95 1 2 152 35 184 4.52e-24 92.4
Msa0715770 MtrunA17_Chr1g0167831 35.821 134 84 2 2 134 1 133 1.54e-12 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0715770 AT3G50810.3 53.947 152 70 0 2 153 1 152 1.73e-53 166
Msa0715770 AT3G50810.2 53.947 152 70 0 2 153 1 152 1.73e-53 166
Msa0715770 AT3G50810.1 53.947 152 70 0 2 153 1 152 1.73e-53 166
Msa0715770 AT4G37235.1 57.143 154 59 2 2 153 1 149 9.58e-52 162
Msa0715770 AT1G49405.1 52.632 133 60 3 2 133 1 131 2.57e-32 112
Msa0715770 AT3G23200.1 36.842 152 94 2 2 152 1 151 3.04e-24 92.0
Msa0715770 AT2G28370.1 39.073 151 91 1 2 152 29 178 4.86e-24 92.4
Msa0715770 AT3G53850.1 35.484 155 96 2 2 153 1 154 4.20e-21 84.0
Msa0715770 AT3G53850.2 35.484 155 96 2 2 153 1 154 4.20e-21 84.0
Msa0715770 AT5G02060.1 37.086 151 93 1 2 150 1 151 5.31e-20 81.3
Msa0715770 AT2G37200.1 34.899 149 95 1 2 150 31 177 6.58e-19 79.0
Msa0715770 AT2G37200.2 34.899 149 95 1 2 150 60 206 1.32e-18 79.0
Msa0715770 AT3G53850.3 34.815 135 82 3 22 153 10 141 5.64e-15 67.8
Msa0715770 AT3G23200.2 35.780 109 68 2 45 152 17 124 9.87e-12 58.9

Find 37 sgRNAs with CRISPR-Local

Find 246 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAAGAGGAATGGAAATAATT+TGG 0.185538 5_1:-8919955 None:intergenic
GCTCATATTGATAATTGTTT+TGG 0.223338 5_1:+8923000 Msa0715770:CDS
AAGAGGAATGGAAATAATTT+GGG 0.230436 5_1:-8919954 None:intergenic
TTCTCTTTGTTTCATGTGTT+TGG 0.236848 5_1:+8920177 Msa0715770:CDS
CGCTAGCTTAACTCTTCGTC+TGG 0.266802 5_1:+8920132 Msa0715770:CDS
TTGATAATTGAAATAATATA+AGG 0.276056 5_1:+8920043 Msa0715770:five_prime_UTR
CTGCTATGGCATTCTTGTCT+TGG 0.339474 5_1:+8923249 Msa0715770:CDS
GCTATGATGGAGGAACTTCC+AGG 0.360514 5_1:+8920094 Msa0715770:exon
TATCTACCACATAACTTTGC+CGG 0.366897 5_1:-8923215 None:intergenic
ATGGAGCATAACATTGTTCA+TGG 0.382260 5_1:+8922931 Msa0715770:CDS
GAGGAACTTCCAGGAGCGTT+TGG 0.389602 5_1:+8920103 Msa0715770:CDS
TGTATGATGTATCAATAATC+AGG 0.410193 5_1:-8923340 None:intergenic
TTTGATCGACGTTACTAGAA+AGG 0.417194 5_1:+8919994 Msa0715770:five_prime_UTR
GCGCTTGTTCCAAACGCTCC+TGG 0.430262 5_1:-8920112 None:intergenic
TTTGGTAACAGTCATGGGTT+TGG 0.442937 5_1:+8922901 Msa0715770:CDS
ATACATGTACATGAATGAAA+AGG 0.446369 5_1:+8923358 Msa0715770:three_prime_UTR
GTCATGTCATATCTCTCATT+AGG 0.446801 5_1:+8923131 Msa0715770:CDS
ATATCAGTTGTCTGCTGCTA+TGG 0.456970 5_1:+8923235 Msa0715770:CDS
TGTTTCATGTGTTTGGATGT+TGG 0.458236 5_1:+8920184 Msa0715770:CDS
ATTATTATGCTATGCTATGA+TGG 0.470554 5_1:+8920081 Msa0715770:exon
ATCTACCACATAACTTTGCC+GGG 0.481165 5_1:-8923214 None:intergenic
ATCAATGAATGAATGAAAAG+AGG 0.496415 5_1:-8919971 None:intergenic
AGCTGGTAAATCACATTGCC+CGG 0.500518 5_1:+8923196 Msa0715770:CDS
TACATGTACATGAATGAAAA+GGG 0.507629 5_1:+8923359 Msa0715770:three_prime_UTR
TCATGGGTTTGGCAATTCCA+TGG 0.530541 5_1:+8922912 Msa0715770:CDS
AATATGAGCCGTCTTTGAAT+CGG 0.530743 5_1:-8922986 None:intergenic
ATAGATCTTCTGCATGAAGC+TGG 0.531990 5_1:+8923179 Msa0715770:CDS
TGAATGAATGAAAAGAGGAA+TGG 0.535182 5_1:-8919966 None:intergenic
CATTGCCCGGCAAAGTTATG+TGG 0.544949 5_1:+8923209 Msa0715770:CDS
ATGAACAATGTTATGCTCCA+TGG 0.546574 5_1:-8922929 None:intergenic
CGGTAAACATTGTATGAAGA+CGG 0.580199 5_1:-8922966 None:intergenic
ATAGTGTATGTTTACACAGA+AGG 0.582496 5_1:-8923314 None:intergenic
AATGTTTACCGATTCAAAGA+CGG 0.612615 5_1:+8922978 Msa0715770:CDS
AGAGGAATGGAAATAATTTG+GGG 0.624783 5_1:-8919953 None:intergenic
GCTAGCTTAACTCTTCGTCT+GGG 0.631417 5_1:+8920133 Msa0715770:CDS
AAGATCTATAACACTTGCTG+CGG 0.668935 5_1:-8923165 None:intergenic
ATTATGCTATGCTATGATGG+AGG 0.673339 5_1:+8920084 Msa0715770:exon

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTGATAATTGAAATAATATA+AGG + chr5_1:8920043-8920062 Msa0715770:five_prime_UTR 10.0%
!! AAATAATATAAGGATAAAAA+AGG + chr5_1:8920053-8920072 Msa0715770:five_prime_UTR 10.0%
!! CATTAAATAATTTATGTATT+TGG + chr5_1:8920616-8920635 Msa0715770:intron 10.0%
!! AACTATATAAATTTAATCTA+AGG - chr5_1:8920971-8920990 None:intergenic 10.0%
!! AATTTATATAGTTATTTAAC+CGG + chr5_1:8920978-8920997 Msa0715770:intron 10.0%
!!! ATAATTTATGTATTTGGTTT+AGG + chr5_1:8920622-8920641 Msa0715770:intron 15.0%
!!! AGTTTTTATCTTATTTTACA+GGG - chr5_1:8921057-8921076 None:intergenic 15.0%
!!! TAGTTTTTATCTTATTTTAC+AGG - chr5_1:8921058-8921077 None:intergenic 15.0%
!!! TTTTTGAATTTTTATAACTG+GGG - chr5_1:8921221-8921240 None:intergenic 15.0%
!!! CTTTTTGAATTTTTATAACT+GGG - chr5_1:8921222-8921241 None:intergenic 15.0%
!!! TCTTTTTGAATTTTTATAAC+TGG - chr5_1:8921223-8921242 None:intergenic 15.0%
!! AAATGTATTTGATTCAAATT+TGG + chr5_1:8921757-8921776 Msa0715770:intron 15.0%
!!! GATTTTTGTAAGTTTTATTA+GGG - chr5_1:8922254-8922273 None:intergenic 15.0%
!!! TGATTTTTGTAAGTTTTATT+AGG - chr5_1:8922255-8922274 None:intergenic 15.0%
!!! ACATAACATATTTTTTCTTT+CGG + chr5_1:8922478-8922497 Msa0715770:intron 15.0%
!!! ATGTTATTACATTGTATTTT+TGG - chr5_1:8923476-8923495 None:intergenic 15.0%
!!! TTGATGACTTTAATTTGTTA+AGG + chr5_1:8920344-8920363 Msa0715770:intron 20.0%
!!! TGATGACTTTAATTTGTTAA+GGG + chr5_1:8920345-8920364 Msa0715770:intron 20.0%
!!! CTATAGATTTCATTTTCATT+AGG + chr5_1:8920427-8920446 Msa0715770:intron 20.0%
!! TGATTATTTACTCAATTGTT+CGG + chr5_1:8920784-8920803 Msa0715770:intron 20.0%
!!! GTTTTTATCTTATTTTACAG+GGG - chr5_1:8921056-8921075 None:intergenic 20.0%
!! TCCAACAATAATAATTTCAT+AGG + chr5_1:8921078-8921097 Msa0715770:intron 20.0%
!!! TCATAACTCAAAATACATTT+TGG + chr5_1:8921126-8921145 Msa0715770:intron 20.0%
!!! AATTGGAATCATACTTTTTT+GGG - chr5_1:8921172-8921191 None:intergenic 20.0%
!! ATCAATAACATTTAATTCCA+AGG + chr5_1:8921278-8921297 Msa0715770:intron 20.0%
!! TATATATAGAGAAAAGTCAA+AGG - chr5_1:8921791-8921810 None:intergenic 20.0%
!! ATAAACACTTAATACAAAGT+TGG - chr5_1:8922349-8922368 None:intergenic 20.0%
!! TTAACTATGAATATGCTATA+TGG - chr5_1:8922796-8922815 None:intergenic 20.0%
!!! CTCATATTGATAATTGTTTT+GGG + chr5_1:8923001-8923020 Msa0715770:CDS 20.0%
!!! CTTCTTGTCTTTTTAATTTT+TGG + chr5_1:8923285-8923304 Msa0715770:CDS 20.0%
! AAGAGGAATGGAAATAATTT+GGG - chr5_1:8919957-8919976 None:intergenic 25.0%
! AAAGAGGAATGGAAATAATT+TGG - chr5_1:8919958-8919977 None:intergenic 25.0%
! ATCAATGAATGAATGAAAAG+AGG - chr5_1:8919974-8919993 None:intergenic 25.0%
! ATTATTATGCTATGCTATGA+TGG + chr5_1:8920081-8920100 Msa0715770:exon 25.0%
! GAATTAAACAAGAAAGTGAA+AGG - chr5_1:8920241-8920260 None:intergenic 25.0%
! AATGAATAGAATCAAGAAAC+AGG - chr5_1:8920304-8920323 None:intergenic 25.0%
! GCTATAGCTATAAACTAATT+GGG - chr5_1:8920377-8920396 None:intergenic 25.0%
! TGCTATAGCTATAAACTAAT+TGG - chr5_1:8920378-8920397 None:intergenic 25.0%
! TCTTACAATTGACTATTATG+AGG - chr5_1:8920492-8920511 None:intergenic 25.0%
!! TTGTTTCTTGTAAATAGAAC+CGG - chr5_1:8920581-8920600 None:intergenic 25.0%
! GTCAACTTTCTCTTATAAAT+AGG + chr5_1:8920685-8920704 Msa0715770:intron 25.0%
! GATTATTTACTCAATTGTTC+GGG + chr5_1:8920785-8920804 Msa0715770:intron 25.0%
! GCCTATGAAATTATTATTGT+TGG - chr5_1:8921082-8921101 None:intergenic 25.0%
!!! ATACTTTTTTGGGATCTATT+TGG - chr5_1:8921162-8921181 None:intergenic 25.0%
!!! GAATTGGAATCATACTTTTT+TGG - chr5_1:8921173-8921192 None:intergenic 25.0%
! ACTTGAATTTATGTTGGAAT+TGG - chr5_1:8921189-8921208 None:intergenic 25.0%
! TCTCTTACTTGAATTTATGT+TGG - chr5_1:8921195-8921214 None:intergenic 25.0%
! TGTTGGAATTATACTTTCTT+GGG - chr5_1:8921247-8921266 None:intergenic 25.0%
!! ATTGATGATAATACTTGTGT+TGG - chr5_1:8921264-8921283 None:intergenic 25.0%
! TGACTAAATACAATAGCAAA+GGG - chr5_1:8921569-8921588 None:intergenic 25.0%
!! CTTTTCTCTATATATAAGAC+CGG + chr5_1:8921795-8921814 Msa0715770:intron 25.0%
! TTAAGGTTTCAACAAAATTC+CGG + chr5_1:8921980-8921999 Msa0715770:intron 25.0%
! CTAGTACTTAAAAGTAAGTT+TGG - chr5_1:8922041-8922060 None:intergenic 25.0%
!! GAAATCAGTATTTTTCTCTA+TGG + chr5_1:8922118-8922137 Msa0715770:intron 25.0%
! TATTAAGTGTTTATTGAGTC+TGG + chr5_1:8922355-8922374 Msa0715770:intron 25.0%
! TATTAGTCATGGTTATTGAA+AGG - chr5_1:8922514-8922533 None:intergenic 25.0%
!! ATTACACTTTGAAAACGAAA+TGG - chr5_1:8922650-8922669 None:intergenic 25.0%
! TCTTATTCTGACATGATATT+TGG + chr5_1:8922730-8922749 Msa0715770:intron 25.0%
!!! GCTCATATTGATAATTGTTT+TGG + chr5_1:8923000-8923019 Msa0715770:CDS 25.0%
! TGTATGATGTATCAATAATC+AGG - chr5_1:8923343-8923362 None:intergenic 25.0%
! ATACATGTACATGAATGAAA+AGG + chr5_1:8923358-8923377 Msa0715770:three_prime_UTR 25.0%
! TACATGTACATGAATGAAAA+GGG + chr5_1:8923359-8923378 Msa0715770:three_prime_UTR 25.0%
AGAGGAATGGAAATAATTTG+GGG - chr5_1:8919956-8919975 None:intergenic 30.0%
TGAATGAATGAAAAGAGGAA+TGG - chr5_1:8919969-8919988 None:intergenic 30.0%
AGAAAGGAAAAAAGAAAAGC+TGG + chr5_1:8920010-8920029 Msa0715770:five_prime_UTR 30.0%
GAAAGGAAAAAAGAAAAGCT+GGG + chr5_1:8920011-8920030 Msa0715770:five_prime_UTR 30.0%
! TTCTCTTTGTTTCATGTGTT+TGG + chr5_1:8920177-8920196 Msa0715770:CDS 30.0%
!! TGACTTTAATTTGTTAAGGG+AGG + chr5_1:8920348-8920367 Msa0715770:intron 30.0%
AATTAGATTAATACTCCCTC+CGG + chr5_1:8920559-8920578 Msa0715770:intron 30.0%
CTTTCTCTTATAAATAGGAC+CGG + chr5_1:8920690-8920709 Msa0715770:intron 30.0%
GTTATTTAACCGGATTAACT+CGG + chr5_1:8920988-8921007 Msa0715770:intron 30.0%
GTGTTGGAATTATACTTTCT+TGG - chr5_1:8921248-8921267 None:intergenic 30.0%
CTTTCAGTTAAGCAAAAAAC+CGG + chr5_1:8921338-8921357 Msa0715770:intron 30.0%
!! AGTACAACAACTGATTTGAA+CGG - chr5_1:8921543-8921562 None:intergenic 30.0%
CTGACTAAATACAATAGCAA+AGG - chr5_1:8921570-8921589 None:intergenic 30.0%
!! AGTTTTAACCAAAATCACAG+CGG - chr5_1:8921702-8921721 None:intergenic 30.0%
GGTTAAAACTATACTTCCTT+CGG + chr5_1:8921712-8921731 Msa0715770:intron 30.0%
TTGCTTATATATAAGACCGA+AGG - chr5_1:8921731-8921750 None:intergenic 30.0%
!! AGAGAAAAGTCAAAGGTATT+TGG - chr5_1:8921784-8921803 None:intergenic 30.0%
TGAACAATGAAGTATATGTC+TGG - chr5_1:8921884-8921903 None:intergenic 30.0%
! TTGGCTAAAGCTACATTTTA+AGG + chr5_1:8921963-8921982 Msa0715770:intron 30.0%
! TGTAATTTTGTTGAAACTGC+CGG - chr5_1:8922002-8922021 None:intergenic 30.0%
!! TAGAAATTTGGTGGACATTT+TGG + chr5_1:8922431-8922450 Msa0715770:intron 30.0%
TTGGAACAATAGTAGGATTA+AGG + chr5_1:8922450-8922469 Msa0715770:intron 30.0%
ACAATAGTAGGATTAAGGAA+AGG + chr5_1:8922455-8922474 Msa0715770:intron 30.0%
AACCATGACTAATACAAAGT+TGG + chr5_1:8922520-8922539 Msa0715770:intron 30.0%
AGAATCTAGATTAAACACAG+TGG - chr5_1:8922627-8922646 None:intergenic 30.0%
! CGTTTTCAAAGTGTAATTGT+TGG + chr5_1:8922653-8922672 Msa0715770:intron 30.0%
AAGTGTAATTGTTGGTATGA+TGG + chr5_1:8922661-8922680 Msa0715770:intron 30.0%
CATAGTTAAAAATTCGCAGA+AGG + chr5_1:8922807-8922826 Msa0715770:intron 30.0%
!! AATGTTTACCGATTCAAAGA+CGG + chr5_1:8922978-8922997 Msa0715770:CDS 30.0%
!!! TTTTTTTCCAAGACCAAGTT+AGG + chr5_1:8923057-8923076 Msa0715770:intron 30.0%
TGATATAATTTCCGTATTCC+AGG + chr5_1:8923109-8923128 Msa0715770:intron 30.0%
ATAGTGTATGTTTACACAGA+AGG - chr5_1:8923317-8923336 None:intergenic 30.0%
!! TGACAAAGTCATTTTCTCTT+TGG + chr5_1:8923388-8923407 Msa0715770:three_prime_UTR 30.0%
TTTGATCGACGTTACTAGAA+AGG + chr5_1:8919994-8920013 Msa0715770:five_prime_UTR 35.0%
ATTATGCTATGCTATGATGG+AGG + chr5_1:8920084-8920103 Msa0715770:exon 35.0%
TGTTTCATGTGTTTGGATGT+TGG + chr5_1:8920184-8920203 Msa0715770:CDS 35.0%
AATCAACTAATCATCATCGC+AGG - chr5_1:8920401-8920420 None:intergenic 35.0%
AGAAGAAAGAGACATATACG+TGG - chr5_1:8920453-8920472 None:intergenic 35.0%
TTCTTGTAAATAGAACCGGA+GGG - chr5_1:8920577-8920596 None:intergenic 35.0%
TTTCTTGTAAATAGAACCGG+AGG - chr5_1:8920578-8920597 None:intergenic 35.0%
ATGATATGATATACTCCCTC+CGG - chr5_1:8920712-8920731 None:intergenic 35.0%
!! GATGACTCGGTTAAATAACT+CGG + chr5_1:8920944-8920963 Msa0715770:intron 35.0%
!! CAACTGATTTGAACGGTTAA+AGG - chr5_1:8921536-8921555 None:intergenic 35.0%
TTGACTGAACGAAATTAAGC+TGG - chr5_1:8921599-8921618 None:intergenic 35.0%
! GCACTAAGTTGGCTATATAA+AGG - chr5_1:8921639-8921658 None:intergenic 35.0%
AATCCAAACATGCACTAAGT+TGG - chr5_1:8921650-8921669 None:intergenic 35.0%
AACTTAGTGCATGTTTGGAT+TGG + chr5_1:8921649-8921668 Msa0715770:intron 35.0%
TTACTGGCAAAGTGTATGTT+TGG - chr5_1:8921908-8921927 None:intergenic 35.0%
! GATTTTGCCAAACTCATTAC+TGG - chr5_1:8921924-8921943 None:intergenic 35.0%
! AGCTTTAGCCAAAGTTATAG+TGG - chr5_1:8921955-8921974 None:intergenic 35.0%
TACCATAGCAGAGAAAATGA+GGG - chr5_1:8922305-8922324 None:intergenic 35.0%
!! ACCAAATTTCTAGAGCTTTG+AGG - chr5_1:8922423-8922442 None:intergenic 35.0%
!! TCAAAGCTCTAGAAATTTGG+TGG + chr5_1:8922422-8922441 Msa0715770:intron 35.0%
!!! GGACATTTTGGAACAATAGT+AGG + chr5_1:8922443-8922462 Msa0715770:intron 35.0%
CTCCAACTTTGTATTAGTCA+TGG - chr5_1:8922525-8922544 None:intergenic 35.0%
!! AGTTGGAGTTTTAACGTGTT+TGG + chr5_1:8922537-8922556 Msa0715770:intron 35.0%
TCACAGTATGATACACTTTG+AGG + chr5_1:8922582-8922601 Msa0715770:intron 35.0%
AATTGTTGGTATGATGGCAA+AGG + chr5_1:8922667-8922686 Msa0715770:intron 35.0%
ATTGTTGGTATGATGGCAAA+GGG + chr5_1:8922668-8922687 Msa0715770:intron 35.0%
GTTAAAAATTCGCAGAAGGA+CGG + chr5_1:8922811-8922830 Msa0715770:intron 35.0%
!!! AGGTTTTTGGTAACAGTCAT+GGG + chr5_1:8922896-8922915 Msa0715770:intron 35.0%
ATGAACAATGTTATGCTCCA+TGG - chr5_1:8922932-8922951 None:intergenic 35.0%
ATGGAGCATAACATTGTTCA+TGG + chr5_1:8922931-8922950 Msa0715770:CDS 35.0%
CGGTAAACATTGTATGAAGA+CGG - chr5_1:8922969-8922988 None:intergenic 35.0%
AATATGAGCCGTCTTTGAAT+CGG - chr5_1:8922989-8923008 None:intergenic 35.0%
!!! GATAATTGTTTTGGGAGACA+TGG + chr5_1:8923009-8923028 Msa0715770:CDS 35.0%
ATATGACATGACCTGGAATA+CGG - chr5_1:8923123-8923142 None:intergenic 35.0%
GTCATGTCATATCTCTCATT+AGG + chr5_1:8923131-8923150 Msa0715770:CDS 35.0%
! AAGATCTATAACACTTGCTG+CGG - chr5_1:8923168-8923187 None:intergenic 35.0%
TATCTACCACATAACTTTGC+CGG - chr5_1:8923218-8923237 None:intergenic 35.0%
ATGTCTCTTTCTTCTTGCCT+TGG + chr5_1:8920458-8920477 Msa0715770:intron 40.0%
TGTCTCTTTCTTCTTGCCTT+GGG + chr5_1:8920459-8920478 Msa0715770:intron 40.0%
TTTCTTCTTGCCTTGGGATA+TGG + chr5_1:8920465-8920484 Msa0715770:intron 40.0%
TTCTTCTTGCCTTGGGATAT+GGG + chr5_1:8920466-8920485 Msa0715770:intron 40.0%
TCTCTTATAAATAGGACCGG+AGG + chr5_1:8920693-8920712 Msa0715770:intron 40.0%
CTCTTATAAATAGGACCGGA+GGG + chr5_1:8920694-8920713 Msa0715770:intron 40.0%
AAAACTATGGTTCGAGGTCA+TGG - chr5_1:8920819-8920838 None:intergenic 40.0%
AGTCTGAAAACTATGGTTCG+AGG - chr5_1:8920825-8920844 None:intergenic 40.0%
! CGAACCATAGTTTTCAGACT+CGG + chr5_1:8920825-8920844 Msa0715770:intron 40.0%
CGATTCAATCCGAGTTAATC+CGG - chr5_1:8921000-8921019 None:intergenic 40.0%
CGGATTAACTCGGATTGAAT+CGG + chr5_1:8920998-8921017 Msa0715770:intron 40.0%
CTCAATCAATCTTGACTCCT+TGG - chr5_1:8921298-8921317 None:intergenic 40.0%
ATTTCGTTCAGTCAACGATC+TGG + chr5_1:8921604-8921623 Msa0715770:intron 40.0%
TTTCGTTCAGTCAACGATCT+GGG + chr5_1:8921605-8921624 Msa0715770:intron 40.0%
TAGCCAACTTAGTGCATGTT+TGG + chr5_1:8921644-8921663 Msa0715770:intron 40.0%
!! AAGCAAAAAAGCACTCTCTC+CGG - chr5_1:8921817-8921836 None:intergenic 40.0%
!!! GCTTTTTTGCTTCAACACCA+CGG + chr5_1:8921825-8921844 Msa0715770:intron 40.0%
GAAGTATATGTCTGGATGAG+CGG - chr5_1:8921876-8921895 None:intergenic 40.0%
CACTTTGCCAGTAATGAGTT+TGG + chr5_1:8921914-8921933 Msa0715770:intron 40.0%
! ACGTTGTGCCACTATAACTT+TGG + chr5_1:8921944-8921963 Msa0715770:intron 40.0%
ACCATAGCAGAGAAAATGAG+GGG - chr5_1:8922304-8922323 None:intergenic 40.0%
CTACCATAGCAGAGAAAATG+AGG - chr5_1:8922306-8922325 None:intergenic 40.0%
! TTTGAGGCAAGTGATTTGGA+TGG - chr5_1:8922407-8922426 None:intergenic 40.0%
!! GCCTCAAAGCTCTAGAAATT+TGG + chr5_1:8922419-8922438 Msa0715770:intron 40.0%
TTGAGGCTTCAACAAAGTCA+CGG + chr5_1:8922599-8922618 Msa0715770:intron 40.0%
!! CTTTACACTTGCTATTCCAC+AGG + chr5_1:8922876-8922895 Msa0715770:intron 40.0%
!!! CTTGCTATTCCACAGGTTTT+TGG + chr5_1:8922883-8922902 Msa0715770:intron 40.0%
TGACTGTTACCAAAAACCTG+TGG - chr5_1:8922895-8922914 None:intergenic 40.0%
!!! CAGGTTTTTGGTAACAGTCA+TGG + chr5_1:8922895-8922914 Msa0715770:intron 40.0%
! TTTGGTAACAGTCATGGGTT+TGG + chr5_1:8922901-8922920 Msa0715770:CDS 40.0%
AGTAACAGCATGAAACGATG+AGG - chr5_1:8923083-8923102 None:intergenic 40.0%
ATGAGAGATATGACATGACC+TGG - chr5_1:8923130-8923149 None:intergenic 40.0%
ATAGATCTTCTGCATGAAGC+TGG + chr5_1:8923179-8923198 Msa0715770:CDS 40.0%
ATCTACCACATAACTTTGCC+GGG - chr5_1:8923217-8923236 None:intergenic 40.0%
ATATCAGTTGTCTGCTGCTA+TGG + chr5_1:8923235-8923254 Msa0715770:CDS 40.0%
! GCTAGCTTAACTCTTCGTCT+GGG + chr5_1:8920133-8920152 Msa0715770:CDS 45.0%
ATTATGAGGCCCATATCCCA+AGG - chr5_1:8920478-8920497 None:intergenic 45.0%
! CATAGTTTTCAGACTCGGCT+CGG + chr5_1:8920830-8920849 Msa0715770:intron 45.0%
ATTTAACCGAGTCATCCGAG+TGG - chr5_1:8920940-8920959 None:intergenic 45.0%
CGGTCAAAACCGGTAAAAAC+CGG - chr5_1:8921389-8921408 None:intergenic 45.0%
!!! CGGTTTTTACCGGTTTTGAC+CGG + chr5_1:8921387-8921406 Msa0715770:intron 45.0%
!!! GGTTTTTACCGGTTTTGACC+GGG + chr5_1:8921388-8921407 Msa0715770:intron 45.0%
GTTTGACCGAGTTAACTGCA+TGG + chr5_1:8921410-8921429 Msa0715770:intron 45.0%
GTTCGAGCCAACATTTGGAT+CGG - chr5_1:8921436-8921455 None:intergenic 45.0%
!! ATCCAAATGTTGGCTCGAAC+CGG + chr5_1:8921436-8921455 Msa0715770:intron 45.0%
! CATAGTTTTCAGACTCGGCT+CGG - chr5_1:8920830-8920849 None:intergenic 45.0%
! CGAGGCATAGTTTTCAGACT+CGG - chr5_1:8921509-8921528 None:intergenic 45.0%
TGAACGGTTAAAGGAGTTCG+AGG - chr5_1:8921527-8921546 None:intergenic 45.0%
! AAGATGAGCCGCTGTGATTT+TGG + chr5_1:8921691-8921710 Msa0715770:intron 45.0%
CGGTGAGATTGGCAAAATCA+CGG - chr5_1:8921856-8921875 None:intergenic 45.0%
! ACCCCTCATTTTCTCTGCTA+TGG + chr5_1:8922300-8922319 Msa0715770:intron 45.0%
!! GAGCTTTGAGGCAAGTGATT+TGG - chr5_1:8922411-8922430 None:intergenic 45.0%
TTCGCAGAAGGACGGAAAAA+AGG + chr5_1:8922819-8922838 Msa0715770:intron 45.0%
GAAGGACGGAAAAAAGGCTT+AGG + chr5_1:8922825-8922844 Msa0715770:intron 45.0%
TCATGGGTTTGGCAATTCCA+TGG + chr5_1:8922912-8922931 Msa0715770:CDS 45.0%
TGAAACGATGAGGCCTAACT+TGG - chr5_1:8923073-8923092 None:intergenic 45.0%
AGCTGGTAAATCACATTGCC+CGG + chr5_1:8923196-8923215 Msa0715770:CDS 45.0%
CTGCTATGGCATTCTTGTCT+TGG + chr5_1:8923249-8923268 Msa0715770:CDS 45.0%
! GCTATGATGGAGGAACTTCC+AGG + chr5_1:8920094-8920113 Msa0715770:exon 50.0%
! CGCTAGCTTAACTCTTCGTC+TGG + chr5_1:8920132-8920151 Msa0715770:CDS 50.0%
! CAGGTGCTGTGTGAATTGAG+AGG - chr5_1:8920285-8920304 None:intergenic 50.0%
CGAGCCGAGTCTGAAAACTA+TGG - chr5_1:8921502-8921521 None:intergenic 50.0%
GTCGAACCTCATGACTGAAC+CGG + chr5_1:8920912-8920931 Msa0715770:intron 50.0%
ATGACTGAACCGGAACCACT+CGG + chr5_1:8920922-8920941 Msa0715770:intron 50.0%
CTCGGATTGAATCGGTGACT+CGG + chr5_1:8921006-8921025 Msa0715770:intron 50.0%
ACCGGTAAAAACCGGTGACT+CGG - chr5_1:8921381-8921400 None:intergenic 50.0%
GCAGTTAACTCGGTCAAACC+CGG - chr5_1:8921409-8921428 None:intergenic 50.0%
GATCGGCCATGCAGTTAACT+CGG - chr5_1:8921419-8921438 None:intergenic 50.0%
TGCATGGCCGATCCAAATGT+TGG + chr5_1:8921426-8921445 Msa0715770:intron 50.0%
GATGAGGCCTAACTTGGTCT+TGG - chr5_1:8923067-8923086 None:intergenic 50.0%
CATTGCCCGGCAAAGTTATG+TGG + chr5_1:8923209-8923228 Msa0715770:CDS 50.0%
!! GAGGAACTTCCAGGAGCGTT+TGG + chr5_1:8920103-8920122 Msa0715770:CDS 55.0%
GTACTGGGTCACTGGGTCAA+TGG + chr5_1:8920870-8920889 Msa0715770:intron 55.0%
TGGGTCAATGGTCGAACCAC+TGG + chr5_1:8920882-8920901 Msa0715770:intron 55.0%
GGGTCAATGGTCGAACCACT+GGG + chr5_1:8920883-8920902 Msa0715770:intron 55.0%
GTGGTTCCGGTTCAGTCATG+AGG - chr5_1:8920921-8920940 None:intergenic 55.0%
AACCGGTCTGACCCATGACT+CGG + chr5_1:8921355-8921374 Msa0715770:intron 55.0%
!!! GCCGAGTCACCGGTTTTTAC+CGG + chr5_1:8921377-8921396 Msa0715770:intron 55.0%
CGGTCAAACCCGGTCAAAAC+CGG - chr5_1:8921399-8921418 None:intergenic 55.0%
!! AGCCGGTTCGAGCCAACATT+TGG - chr5_1:8921441-8921460 None:intergenic 55.0%
!!! TTTTCAGACTCGGCTCGGAC+CGG - chr5_1:8921499-8921518 None:intergenic 55.0%
GCAAAATCACGGTAGCACCG+TGG - chr5_1:8921845-8921864 None:intergenic 55.0%
GTCTGGATGAGCGGTGAGAT+TGG - chr5_1:8921867-8921886 None:intergenic 55.0%
GCGCTTGTTCCAAACGCTCC+TGG - chr5_1:8920115-8920134 None:intergenic 60.0%
!! ACTCGGCTCGGTCATCGACT+CGG + chr5_1:8920842-8920861 Msa0715770:intron 60.0%
TGGTCGAACCACTGGGTCGT+TGG + chr5_1:8920890-8920909 Msa0715770:intron 60.0%
AGGTTCGACCAACGACCCAG+TGG - chr5_1:8920901-8920920 None:intergenic 60.0%
CCGAGTCATCCGAGTGGTTC+CGG - chr5_1:8920934-8920953 None:intergenic 60.0%
CCGGAACCACTCGGATGACT+CGG + chr5_1:8920931-8920950 Msa0715770:intron 60.0%
!! ATCGACTCGGCGGGGGTACT+GGG + chr5_1:8920855-8920874 Msa0715770:intron 65.0%
GGCCGAGTCATGGGTCAGAC+CGG - chr5_1:8921360-8921379 None:intergenic 65.0%
! CGGTGACTCGGCCGAGTCAT+GGG - chr5_1:8921369-8921388 None:intergenic 65.0%
! CCATGACTCGGCCGAGTCAC+CGG + chr5_1:8921367-8921386 Msa0715770:intron 65.0%
! GCTCGAACCGGCTTACCCAC+CGG + chr5_1:8921448-8921467 Msa0715770:intron 65.0%
CCGTGAACCGGTGGGTAAGC+CGG - chr5_1:8921458-8921477 None:intergenic 65.0%
!! CCGGCTTACCCACCGGTTCA+CGG + chr5_1:8921455-8921474 Msa0715770:intron 65.0%
!! CGGCTCGGTCATCGACTCGG+CGG + chr5_1:8920845-8920864 Msa0715770:intron 70.0%
!! GGCTCGGTCATCGACTCGGC+GGG + chr5_1:8920846-8920865 Msa0715770:intron 70.0%
!! GCTCGGTCATCGACTCGGCG+GGG + chr5_1:8920847-8920866 Msa0715770:intron 70.0%
!! CTCGGTCATCGACTCGGCGG+GGG + chr5_1:8920848-8920867 Msa0715770:intron 70.0%
!! CATCGACTCGGCGGGGGTAC+TGG + chr5_1:8920854-8920873 Msa0715770:intron 70.0%
!! GGCGGGGGTACTGGGTCACT+GGG + chr5_1:8920863-8920882 Msa0715770:intron 70.0%
! CCGGTGACTCGGCCGAGTCA+TGG - chr5_1:8921370-8921389 None:intergenic 70.0%
CGGTCGGACCGTGAACCGGT+GGG - chr5_1:8921466-8921485 None:intergenic 70.0%
!! CCACCGGTTCACGGTCCGAC+CGG + chr5_1:8921464-8921483 Msa0715770:intron 70.0%
GGACCGGTCGGACCGTGAAC+CGG - chr5_1:8921470-8921489 None:intergenic 70.0%
!! CGGCGGGGGTACTGGGTCAC+TGG + chr5_1:8920862-8920881 Msa0715770:intron 75.0%
CCGGTCGGACCGTGAACCGG+TGG - chr5_1:8921467-8921486 None:intergenic 75.0%
CACGGTCCGACCGGTCCGAC+CGG + chr5_1:8921473-8921492 Msa0715770:intron 75.0%
!! CAGACTCGGCTCGGACCGGC+CGG - chr5_1:8921495-8921514 None:intergenic 75.0%
! GTCCGACCGGTCCGACCGGC+CGG + chr5_1:8921477-8921496 Msa0715770:intron 80.0%
! GACCGGCCGGTCGGACCGGT+CGG - chr5_1:8921482-8921501 None:intergenic 80.0%
! CTCGGACCGGCCGGTCGGAC+CGG - chr5_1:8921486-8921505 None:intergenic 80.0%
!!! CTCGGCTCGGACCGGCCGGT+CGG - chr5_1:8921491-8921510 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 8919944 8923500 8919944 ID=Msa0715770;Name=Msa0715770
chr5_1 mRNA 8919944 8923500 8919944 ID=Msa0715770-mRNA-1;Parent=Msa0715770;Name=Msa0715770-mRNA-1;_AED=0.26;_eAED=0.26;_QI=153|1|1|1|1|1|3|175|153
chr5_1 exon 8919944 8920230 8919944 ID=Msa0715770-mRNA-1:exon:3657;Parent=Msa0715770-mRNA-1
chr5_1 exon 8922898 8923030 8922898 ID=Msa0715770-mRNA-1:exon:3658;Parent=Msa0715770-mRNA-1
chr5_1 exon 8923131 8923500 8923131 ID=Msa0715770-mRNA-1:exon:3659;Parent=Msa0715770-mRNA-1
chr5_1 five_prime_UTR 8919944 8920096 8919944 ID=Msa0715770-mRNA-1:five_prime_utr;Parent=Msa0715770-mRNA-1
chr5_1 CDS 8920097 8920230 8920097 ID=Msa0715770-mRNA-1:cds;Parent=Msa0715770-mRNA-1
chr5_1 CDS 8922898 8923030 8922898 ID=Msa0715770-mRNA-1:cds;Parent=Msa0715770-mRNA-1
chr5_1 CDS 8923131 8923325 8923131 ID=Msa0715770-mRNA-1:cds;Parent=Msa0715770-mRNA-1
chr5_1 three_prime_UTR 8923326 8923500 8923326 ID=Msa0715770-mRNA-1:three_prime_utr;Parent=Msa0715770-mRNA-1
Gene Sequence

>Msa0715770

ATGATGGAGGAACTTCCAGGAGCGTTTGGAACAAGCGCTAGCTTAACTCTTCGTCTGGGTCAAATTGTTTTCTCATCTGCTTCTCTTTGTTTCATGTGTTTGGATGTTGGTTTCTACTCATACACTTCTTTCTCGTTTTTGGTAACAGTCATGGGTTTGGCAATTCCATGGAGCATAACATTGTTCATGGTAGATGCTTACTCCGTCTTCATACAATGTTTACCGATTCAAAGACGGCTCATATTGATAATTGTTTTGGGAGACATGGTCATGTCATATCTCTCATTAGGTGCAGCATGTTCCGCAGCAAGTGTTATAGATCTTCTGCATGAAGCTGGTAAATCACATTGCCCGGCAAAGTTATGTGGTAGATATCAGTTGTCTGCTGCTATGGCATTCTTGTCTTGGTTTCTTTCATCAGCTTCTTGTCTTTTTAATTTTTGGATTTTACCTTCTGTGTAA

Protein sequence

>Msa0715770

MMEELPGAFGTSASLTLRLGQIVFSSASLCFMCLDVGFYSYTSFSFLVTVMGLAIPWSITLFMVDAYSVFIQCLPIQRRLILIIVLGDMVMSYLSLGAACSAASVIDLLHEAGKSHCPAKLCGRYQLSAAMAFLSWFLSSASCLFNFWILPSV*