AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1462290


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1462290 MtrunA17_Chr1g0184301 83.465 127 1 1 1 107 1 127 1.98e-62 186
Msa1462290 MtrunA17_Chr1g0168091 50.000 112 32 2 16 107 18 125 6.15e-29 101
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1462290 AT3G58170.1 62.698 126 23 2 2 107 1 122 2.38e-47 148
Msa1462290 AT4G14455.1 47.287 129 39 3 2 107 1 123 5.22e-32 109

Find 39 sgRNAs with CRISPR-Local

Find 219 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAGAGCAACTCTGTTGTTTC+GGG 0.248402 tig0042133:+9005 None:intergenic
GTGCATAAGTAAAGGTTCTT+TGG 0.278035 tig0042133:+10420 None:intergenic
TTATTATCTAACTAGGTAAT+TGG 0.282291 tig0042133:-7307 Msa1462290:exon
AAAGAGCAACTCTGTTGTTT+CGG 0.302142 tig0042133:+9004 None:intergenic
CAATGGATGGATTGCAAGAT+AGG 0.310657 tig0042133:-8891 Msa1462290:CDS
TATCATGCTCATCAATTTCA+TGG 0.334184 tig0042133:+8923 None:intergenic
GCATGCTTCATCCTTCAGTT+TGG 0.390901 tig0042133:-7142 Msa1462290:three_prime_UTR
GAAGGATGAAGCATGCATAA+AGG 0.391954 tig0042133:+7149 None:intergenic
TTACTTATGCACAGAACAAC+AGG 0.419198 tig0042133:-10409 Msa1462290:intron
AAGGATGAAGCATGCATAAA+GGG 0.441495 tig0042133:+7150 None:intergenic
GATCGAGTGAATCCGTGATC+TGG 0.450210 tig0042133:-10277 Msa1462290:five_prime_UTR
TTATCATTTATTATCTAACT+AGG 0.454715 tig0042133:-7314 Msa1462290:CDS
AGTGAAGGAGAGATAGAAAG+AGG 0.457757 tig0042133:+10443 None:intergenic
TAACCGCATGCTGGACCATA+TGG 0.468085 tig0042133:-7949 Msa1462290:intron
GAGATATGATGAATTCTAGA+AGG 0.474589 tig0042133:-10244 Msa1462290:intron
CTACCAGTGAGAACATTCTT+CGG 0.488488 tig0042133:+7358 None:intergenic
GTCTGTTTGCAACAGCTGTC+AGG 0.490064 tig0042133:-7999 Msa1462290:intron
GTAAAGGTTCTTTGGAGTGA+AGG 0.497314 tig0042133:+10428 None:intergenic
GTTGTTCTGTGCATAAGTAA+AGG 0.505706 tig0042133:+10412 None:intergenic
TTTGATGGTATTGAGGAGGG+TGG 0.537955 tig0042133:-8982 Msa1462290:CDS
GGATAATCATAACCGCATGC+TGG 0.540508 tig0042133:-7958 Msa1462290:CDS
GATAATGAACAAGCAATGGA+TGG 0.545746 tig0042133:-8904 Msa1462290:CDS
CAATGAATGATAAGAACACT+TGG 0.549968 tig0042133:-7075 Msa1462290:three_prime_UTR
ATCATGCTCATCAATTTCAT+GGG 0.551837 tig0042133:+8924 None:intergenic
GATGAAAGCTTCCAAACTGA+AGG 0.560349 tig0042133:+7131 None:intergenic
AGGTGATATACATGAGGAGG+TGG 0.560404 tig0042133:-7979 Msa1462290:CDS
AATGGATGGATTGCAAGATA+GGG 0.574154 tig0042133:-8890 Msa1462290:CDS
CGAGTGAATCCGTGATCTGG+TGG 0.588577 tig0042133:-10274 Msa1462290:five_prime_UTR
AATCCGTGATCTGGTGGTGG+TGG 0.598793 tig0042133:-10268 Msa1462290:five_prime_UTR
GCTTGATGTTGAATCTGAGA+AGG 0.598861 tig0042133:-7270 Msa1462290:three_prime_UTR
GCATGATAATGAACAAGCAA+TGG 0.600126 tig0042133:-8908 Msa1462290:CDS
GAGCCGAAGAATGTTCTCAC+TGG 0.607304 tig0042133:-7361 Msa1462290:CDS
GTGAATCCGTGATCTGGTGG+TGG 0.622641 tig0042133:-10271 Msa1462290:five_prime_UTR
TCACCACCACCACCAGATCA+CGG 0.632812 tig0042133:+10265 None:intergenic
AATTTCATGGGAAGAAGCTG+AGG 0.635387 tig0042133:+8936 None:intergenic
ATCTTTATACAGACACACAA+CGG 0.649000 tig0042133:+7200 None:intergenic
GTCAGGTGATATACATGAGG+AGG 0.657694 tig0042133:-7982 Msa1462290:CDS
ACACCATATGGTCCAGCATG+CGG 0.665472 tig0042133:+7946 None:intergenic
GCTGTCAGGTGATATACATG+AGG 0.690650 tig0042133:-7985 Msa1462290:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAACATATTAATTAGAAA+AGG + tig0042133:7340-7359 None:intergenic 10.0%
!! TGTAATTAATAATCAATAAT+AGG - tig0042133:8020-8039 Msa1462290:intron 10.0%
!! ATAGATATTATAATTATAGT+AGG + tig0042133:9349-9368 None:intergenic 10.0%
!! CTATAATTATAATATCTATT+TGG - tig0042133:9350-9369 Msa1462290:intron 10.0%
!!! TAATATGTTATTTCATATTC+TGG - tig0042133:7348-7367 Msa1462290:CDS 15.0%
!! TTATCATTTATTATCTAACT+AGG - tig0042133:10209-10228 Msa1462290:intron 15.0%
!!! TTTTGATATGTGTGATTTAT+TGG - tig0042133:7490-7509 Msa1462290:intron 20.0%
!! CAACTTGTATTTAAATACTA+TGG - tig0042133:7885-7904 Msa1462290:intron 20.0%
!! AACAAAAATGAATAGAGAAA+AGG - tig0042133:7950-7969 Msa1462290:CDS 20.0%
!!! CTTGATATTTTATGCAATTA+TGG - tig0042133:8357-8376 Msa1462290:intron 20.0%
!! GAAACAATATCATATAAACA+AGG + tig0042133:8826-8845 None:intergenic 20.0%
!!! TTATATGATATTGTTTCTGT+TGG - tig0042133:8829-8848 Msa1462290:intron 20.0%
!!! TATATGATATTGTTTCTGTT+GGG - tig0042133:8830-8849 Msa1462290:intron 20.0%
!! ATTCAGAAATATTGTTAGAA+AGG - tig0042133:9078-9097 Msa1462290:intron 20.0%
!! AAATATTGTTAGAAAGGATT+AGG - tig0042133:9084-9103 Msa1462290:intron 20.0%
!! AGTGTATTATTGAATGTAAA+TGG + tig0042133:9197-9216 None:intergenic 20.0%
!! TAAATAGTCTACAGAAAAAA+GGG + tig0042133:9385-9404 None:intergenic 20.0%
!! TTAAATAGTCTACAGAAAAA+AGG + tig0042133:9386-9405 None:intergenic 20.0%
!! AGTATCTAAGAAAAACTAAT+TGG + tig0042133:10009-10028 None:intergenic 20.0%
!! ATTAAATATTTGAACTTGAG+AGG + tig0042133:10103-10122 None:intergenic 20.0%
!! TTATTATCTAACTAGGTAAT+TGG - tig0042133:10216-10235 Msa1462290:intron 20.0%
!!! TTGAGGTTTTGTTTTCATTT+TGG - tig0042133:7524-7543 Msa1462290:intron 25.0%
!!! GTTTTGTTTTCATTTTGGAA+TGG - tig0042133:7529-7548 Msa1462290:intron 25.0%
! ACAAATTTGTCACAAATATG+AGG - tig0042133:8120-8139 Msa1462290:intron 25.0%
! TCAAATAAACCTTAATGACA+TGG + tig0042133:8259-8278 None:intergenic 25.0%
! ATTAATCAGAGAGATATCTT+AGG + tig0042133:8333-8352 None:intergenic 25.0%
! GAAAATAGTAAAATCCAATG+TGG + tig0042133:8464-8483 None:intergenic 25.0%
!!! TCGTTTTTGGTTTATTAGAA+TGG - tig0042133:8884-8903 Msa1462290:CDS 25.0%
! ATAGTACAGAATAAGATCAT+GGG + tig0042133:9302-9321 None:intergenic 25.0%
! AATAGTACAGAATAAGATCA+TGG + tig0042133:9303-9322 None:intergenic 25.0%
! AACTATGGACAAATTCAAAA+TGG - tig0042133:9723-9742 Msa1462290:intron 25.0%
!!! ATGTTTATATGACGGATTTT+TGG - tig0042133:9886-9905 Msa1462290:intron 25.0%
! GATAAGAAAAATCACAACAA+AGG + tig0042133:10194-10213 None:intergenic 25.0%
ACAGATCTGAAGAAATGAAA+CGG + tig0042133:7159-7178 None:intergenic 30.0%
GAGATATGATGAATTCTAGA+AGG - tig0042133:7279-7298 Msa1462290:three_prime_UTR 30.0%
! TGAATTCTAGAAGGTTAGTA+AGG - tig0042133:7288-7307 Msa1462290:three_prime_UTR 30.0%
TATTGGTGAATTTCTCTTTG+AGG - tig0042133:7507-7526 Msa1462290:intron 30.0%
GAAATTGTTAGAACAACAAC+TGG - tig0042133:7716-7735 Msa1462290:intron 30.0%
CTTCACTTCCTTTGTATTAT+CGG - tig0042133:7838-7857 Msa1462290:intron 30.0%
ATCTTTCACCGATAATACAA+AGG + tig0042133:7849-7868 None:intergenic 30.0%
TGTATTATCGGTGAAAGATT+AGG - tig0042133:7850-7869 Msa1462290:intron 30.0%
GTATTATCGGTGAAAGATTA+GGG - tig0042133:7851-7870 Msa1462290:intron 30.0%
AATGAATAGAGAAAAGGAGA+AGG - tig0042133:7956-7975 Msa1462290:CDS 30.0%
AAAGGAGAAGGATTAAACAA+AGG - tig0042133:7968-7987 Msa1462290:CDS 30.0%
AAGGAGAAGGATTAAACAAA+GGG - tig0042133:7969-7988 Msa1462290:CDS 30.0%
ATTACATTGAGTATATGAGC+AGG - tig0042133:8054-8073 Msa1462290:intron 30.0%
ATGATTTAATGACACGTACA+AGG + tig0042133:8175-8194 None:intergenic 30.0%
AACACGAATAATACACTGAA+TGG + tig0042133:8206-8225 None:intergenic 30.0%
ATCATGCTCATCAATTTCAT+GGG + tig0042133:8602-8621 None:intergenic 30.0%
TATCATGCTCATCAATTTCA+TGG + tig0042133:8603-8622 None:intergenic 30.0%
CACATAAGTTATCTTTGTAC+AGG + tig0042133:8730-8749 None:intergenic 30.0%
!! CGTCATTTTGTTTCAACTAT+TGG - tig0042133:8764-8783 Msa1462290:intron 30.0%
AGTAAAGGATAACTTACTTC+AGG - tig0042133:8854-8873 Msa1462290:intron 30.0%
AAAATTATACCATGTCCATC+TGG - tig0042133:8947-8966 Msa1462290:CDS 30.0%
GGAAATTGTGTTAGTGAATA+GGG + tig0042133:9005-9024 None:intergenic 30.0%
TGGAAATTGTGTTAGTGAAT+AGG + tig0042133:9006-9025 None:intergenic 30.0%
! ATTTGGAGTTCATTAAACTC+TGG - tig0042133:9120-9139 Msa1462290:intron 30.0%
! ATGGTGGAAAATCAGAAAAA+CGG + tig0042133:9154-9173 None:intergenic 30.0%
! TCTACAGAAAAAAGGGTTTT+AGG + tig0042133:9378-9397 None:intergenic 30.0%
! TAAACTCTGCAATTTTGTGA+TGG - tig0042133:9459-9478 Msa1462290:intron 30.0%
!! TCAGCTAGAAACAGTTTTAA+TGG - tig0042133:9501-9520 Msa1462290:intron 30.0%
!! CAGCTAGAAACAGTTTTAAT+GGG - tig0042133:9502-9521 Msa1462290:intron 30.0%
GCAATATATTACACACCATA+TGG + tig0042133:9592-9611 None:intergenic 30.0%
TGTCTGTTGGTATTTATGTA+GGG - tig0042133:9664-9683 Msa1462290:intron 30.0%
ATTTATGTAGGGCAATGATA+TGG - tig0042133:9675-9694 Msa1462290:intron 30.0%
CAATGATATGGATTCTTCAA+GGG - tig0042133:9687-9706 Msa1462290:intron 30.0%
AATGATATGGATTCTTCAAG+GGG - tig0042133:9688-9707 Msa1462290:intron 30.0%
! TTTGGTCTTCTTCCATATTA+TGG - tig0042133:9904-9923 Msa1462290:intron 30.0%
! CTTAAGAGGGCATATATATA+AGG + tig0042133:9978-9997 None:intergenic 30.0%
CTTATATATATGCCCTCTTA+AGG - tig0042133:9976-9995 Msa1462290:intron 30.0%
!!! TTTTGCTTTCCTTTGTTGTT+TGG - tig0042133:10036-10055 Msa1462290:intron 30.0%
!! TTTGCTTTCCTTTGTTGTTT+GGG - tig0042133:10037-10056 Msa1462290:intron 30.0%
! TTTCTGTATGATGATGTTTC+AGG - tig0042133:10123-10142 Msa1462290:intron 30.0%
ATCTTTATACAGACACACAA+CGG + tig0042133:10326-10345 None:intergenic 30.0%
CAATGAATGATAAGAACACT+TGG - tig0042133:10448-10467 Msa1462290:five_prime_UTR 30.0%
GTGCATAAGTAAAGGTTCTT+TGG + tig0042133:7106-7125 None:intergenic 35.0%
GTTGTTCTGTGCATAAGTAA+AGG + tig0042133:7114-7133 None:intergenic 35.0%
TTACTTATGCACAGAACAAC+AGG - tig0042133:7114-7133 Msa1462290:three_prime_UTR 35.0%
CGAATTGAATAACAACCGAT+AGG + tig0042133:7385-7404 None:intergenic 35.0%
!!! AACCACTTTTTAACGATCAC+TGG - tig0042133:7632-7651 Msa1462290:intron 35.0%
ACATTGCACGTTCTTTGTTA+GGG + tig0042133:7768-7787 None:intergenic 35.0%
AACATTGCACGTTCTTTGTT+AGG + tig0042133:7769-7788 None:intergenic 35.0%
AACAAAGAACGTGCAATGTT+TGG - tig0042133:7769-7788 Msa1462290:intron 35.0%
! CAATGTTTGGTGACAAAGTT+CGG - tig0042133:7782-7801 Msa1462290:intron 35.0%
AGGAGAAGGATTAAACAAAG+GGG - tig0042133:7970-7989 Msa1462290:CDS 35.0%
TTTGTCACAAATATGAGGCA+AGG - tig0042133:8125-8144 Msa1462290:intron 35.0%
GATAGACAAGGAAAAACTGA+AGG + tig0042133:8237-8256 None:intergenic 35.0%
CTTAATGACATGGATAGACA+AGG + tig0042133:8249-8268 None:intergenic 35.0%
CTTGTCTATCCATGTCATTA+AGG - tig0042133:8247-8266 Msa1462290:intron 35.0%
TGTTTATTACCTGACCACAT+TGG - tig0042133:8447-8466 Msa1462290:intron 35.0%
TAGTAAAATCCAATGTGGTC+AGG + tig0042133:8459-8478 None:intergenic 35.0%
! AAAGAGCAACTCTGTTGTTT+CGG + tig0042133:8522-8541 None:intergenic 35.0%
! AACAGAGTTGCTCTTTTTGA+TGG - tig0042133:8526-8545 Msa1462290:intron 35.0%
!! TGCTCTTTTTGATGGTATTG+AGG - tig0042133:8534-8553 Msa1462290:intron 35.0%
!! TCTTTTTGATGGTATTGAGG+AGG - tig0042133:8537-8556 Msa1462290:intron 35.0%
!! CTTTTTGATGGTATTGAGGA+GGG - tig0042133:8538-8557 Msa1462290:intron 35.0%
! GCATGATAATGAACAAGCAA+TGG - tig0042133:8615-8634 Msa1462290:intron 35.0%
GATAATGAACAAGCAATGGA+TGG - tig0042133:8619-8638 Msa1462290:intron 35.0%
!! AATGGATGGATTGCAAGATA+GGG - tig0042133:8633-8652 Msa1462290:intron 35.0%
TATCTTTGTACAGGATAGCT+AGG + tig0042133:8721-8740 None:intergenic 35.0%
!! TTGTTTCTGTTGGGAAGTAA+AGG - tig0042133:8839-8858 Msa1462290:intron 35.0%
!!! TTCAGGAATTGTGTCGTTTT+TGG - tig0042133:8871-8890 Msa1462290:intron 35.0%
ATTGTGTTAGTGAATAGGGA+GGG + tig0042133:9001-9020 None:intergenic 35.0%
AATTGTGTTAGTGAATAGGG+AGG + tig0042133:9002-9021 None:intergenic 35.0%
TGGAAAATCAGAAAAACGGT+AGG + tig0042133:9150-9169 None:intergenic 35.0%
!! AACTGTTTCTAGCTGATACA+GGG + tig0042133:9497-9516 None:intergenic 35.0%
!! AAACTGTTTCTAGCTGATAC+AGG + tig0042133:9498-9517 None:intergenic 35.0%
TTTCTGCTTTAACTGTCTGT+TGG - tig0042133:9651-9670 Msa1462290:intron 35.0%
CTGTCTGTTGGTATTTATGT+AGG - tig0042133:9663-9682 Msa1462290:intron 35.0%
GCAATGATATGGATTCTTCA+AGG - tig0042133:9686-9705 Msa1462290:intron 35.0%
! ATTGTTCCAGTGCTGTTAAA+CGG - tig0042133:9756-9775 Msa1462290:intron 35.0%
GTCATATAAACATGCCATTG+CGG + tig0042133:9879-9898 None:intergenic 35.0%
GCAATGGCATGTTTATATGA+CGG - tig0042133:9878-9897 Msa1462290:intron 35.0%
GAACTATCCAATGTTGTTGA+TGG + tig0042133:9939-9958 None:intergenic 35.0%
!! ATTGGCATTGATCCTTAAGA+GGG + tig0042133:9991-10010 None:intergenic 35.0%
!! AATTGGCATTGATCCTTAAG+AGG + tig0042133:9992-10011 None:intergenic 35.0%
GAGAATGACAACACATTGAT+GGG - tig0042133:10059-10078 Msa1462290:intron 35.0%
AGAATGACAACACATTGATG+GGG - tig0042133:10060-10079 Msa1462290:intron 35.0%
AAGGATGAAGCATGCATAAA+GGG + tig0042133:10376-10395 None:intergenic 35.0%
AGTGAAGGAGAGATAGAAAG+AGG + tig0042133:7083-7102 None:intergenic 40.0%
!! GTAAAGGTTCTTTGGAGTGA+AGG + tig0042133:7098-7117 None:intergenic 40.0%
CTGGAAATTCGTGTTCCTAT+CGG - tig0042133:7367-7386 Msa1462290:CDS 40.0%
TAATACTTGCTTCAGATCCG+TGG - tig0042133:7424-7443 Msa1462290:intron 40.0%
TTGCGTGTGTTAAGAGTTGA+AGG - tig0042133:7561-7580 Msa1462290:intron 40.0%
TGCCAGTGATCGTTAAAAAG+TGG + tig0042133:7637-7656 None:intergenic 40.0%
GAAGGGGTAAAGTTGTAATC+TGG + tig0042133:7912-7931 None:intergenic 40.0%
GAAGGATTAAACAAAGGGGA+AGG - tig0042133:7974-7993 Msa1462290:CDS 40.0%
AGAATCTACATGCATGCATG+AGG + tig0042133:8096-8115 None:intergenic 40.0%
GTGGTCAGGTAATAAACACA+AGG + tig0042133:8445-8464 None:intergenic 40.0%
!! AAGAGCAACTCTGTTGTTTC+GGG + tig0042133:8521-8540 None:intergenic 40.0%
AATTTCATGGGAAGAAGCTG+AGG + tig0042133:8590-8609 None:intergenic 40.0%
!! CAATGGATGGATTGCAAGAT+AGG - tig0042133:8632-8651 Msa1462290:intron 40.0%
GTCTATGGCATGTCAAGTAA+CGG + tig0042133:8693-8712 None:intergenic 40.0%
CTATCAGGTTCATATCCAGA+TGG + tig0042133:8965-8984 None:intergenic 40.0%
CATCTGGATATGAACCTGAT+AGG - tig0042133:8963-8982 Msa1462290:CDS 40.0%
CCTCTGCTACTACAATCTTA+TGG + tig0042133:9026-9045 None:intergenic 40.0%
CCATAAGATTGTAGTAGCAG+AGG - tig0042133:9023-9042 Msa1462290:intron 40.0%
TAGCAGAGGAAATAGAAGAG+AGG - tig0042133:9037-9056 Msa1462290:intron 40.0%
AGCAGAGGAAATAGAAGAGA+GGG - tig0042133:9038-9057 Msa1462290:intron 40.0%
AGGAAATAGAAGAGAGGGAA+GGG - tig0042133:9043-9062 Msa1462290:intron 40.0%
TTAGAAAGGATTAGGAGCTC+TGG - tig0042133:9092-9111 Msa1462290:intron 40.0%
TGAGCTCAAAGCTCTTACAA+TGG + tig0042133:9173-9192 None:intergenic 40.0%
ACTTCGCTTGCTTAAATTCC+TGG - tig0042133:9214-9233 Msa1462290:intron 40.0%
CTTCGCTTGCTTAAATTCCT+GGG - tig0042133:9215-9234 Msa1462290:intron 40.0%
TCTGAATTCTGATAGAACCC+AGG + tig0042133:9235-9254 None:intergenic 40.0%
TGAAAGATGTGATGCAGACA+TGG + tig0042133:9264-9283 None:intergenic 40.0%
!! ACTGTTTCTAGCTGATACAG+GGG + tig0042133:9496-9515 None:intergenic 40.0%
ATTTGTCCATAGTTCCTGAG+AGG + tig0042133:9717-9736 None:intergenic 40.0%
! ATTTTTGACAACTGCCCCAT+AGG - tig0042133:9814-9833 Msa1462290:intron 40.0%
TCCCTTCACAAATTGCCTAT+GGG + tig0042133:9832-9851 None:intergenic 40.0%
ATCCCTTCACAAATTGCCTA+TGG + tig0042133:9833-9852 None:intergenic 40.0%
! CTATCCAATGTTGTTGATGG+CGG + tig0042133:9936-9955 None:intergenic 40.0%
GTCATTCTCCCAAACAACAA+AGG + tig0042133:10048-10067 None:intergenic 40.0%
GGAGAATGACAACACATTGA+TGG - tig0042133:10058-10077 Msa1462290:intron 40.0%
CTACCAGTGAGAACATTCTT+CGG + tig0042133:10168-10187 None:intergenic 40.0%
GCTTGATGTTGAATCTGAGA+AGG - tig0042133:10253-10272 Msa1462290:exon 40.0%
GAAGGATGAAGCATGCATAA+AGG + tig0042133:10377-10396 None:intergenic 40.0%
GATGAAAGCTTCCAAACTGA+AGG + tig0042133:10395-10414 None:intergenic 40.0%
CGTCTACTACACAGTATCCA+CGG + tig0042133:7444-7463 None:intergenic 45.0%
CGTGGATACTGTGTAGTAGA+CGG - tig0042133:7442-7461 Msa1462290:intron 45.0%
GTGGATACTGTGTAGTAGAC+GGG - tig0042133:7443-7462 Msa1462290:intron 45.0%
CGTGTGTTAAGAGTTGAAGG+TGG - tig0042133:7564-7583 Msa1462290:intron 45.0%
GAGTTGAAGGTGGTGAATTG+TGG - tig0042133:7574-7593 Msa1462290:intron 45.0%
GAAGGTGGTGAATTGTGGAT+AGG - tig0042133:7579-7598 Msa1462290:intron 45.0%
CTATGACGTCAAGTAGGAAG+GGG + tig0042133:7928-7947 None:intergenic 45.0%
CCTATGACGTCAAGTAGGAA+GGG + tig0042133:7929-7948 None:intergenic 45.0%
TGTTGCCTATGACGTCAAGT+AGG + tig0042133:7934-7953 None:intergenic 45.0%
AGGTGCATGCTAGTGTTCAT+TGG - tig0042133:7994-8013 Msa1462290:intron 45.0%
! TTTGATGGTATTGAGGAGGG+TGG - tig0042133:8541-8560 Msa1462290:intron 45.0%
GATAGCTAGGTGGTAGTCTA+TGG + tig0042133:8708-8727 None:intergenic 45.0%
CTTTGTACAGGATAGCTAGG+TGG + tig0042133:8718-8737 None:intergenic 45.0%
GGTTCATATCCAGATGGACA+TGG + tig0042133:8959-8978 None:intergenic 45.0%
ATGAACCTGATAGGACACCA+AGG - tig0042133:8972-8991 Msa1462290:CDS 45.0%
GAGGAAATAGAAGAGAGGGA+AGG - tig0042133:9042-9061 Msa1462290:intron 45.0%
GCTCAAAGCTCTTACAATGG+TGG + tig0042133:9170-9189 None:intergenic 45.0%
AAGATGTGATGCAGACATGG+AGG + tig0042133:9261-9280 None:intergenic 45.0%
GCTGTCAGGTGATATACATG+AGG - tig0042133:9538-9557 Msa1462290:intron 45.0%
GTCAGGTGATATACATGAGG+AGG - tig0042133:9541-9560 Msa1462290:intron 45.0%
AGGTGATATACATGAGGAGG+TGG - tig0042133:9544-9563 Msa1462290:intron 45.0%
GGATAATCATAACCGCATGC+TGG - tig0042133:9565-9584 Msa1462290:intron 45.0%
! TGACGTGCCATTATGACATG+TGG + tig0042133:9793-9812 None:intergenic 45.0%
CCCTTCACAAATTGCCTATG+GGG + tig0042133:9831-9850 None:intergenic 45.0%
CCCCATAGGCAATTTGTGAA+GGG - tig0042133:9828-9847 Msa1462290:intron 45.0%
ATGACAACACATTGATGGGG+TGG - tig0042133:10063-10082 Msa1462290:intron 45.0%
GCATGCTTCATCCTTCAGTT+TGG - tig0042133:10381-10400 Msa1462290:intron 45.0%
!!! AATTAATTTTTTATTTGATT+AGG - tig0042133:7217-7236 Msa1462290:three_prime_UTR 5.0%
GATCGAGTGAATCCGTGATC+TGG - tig0042133:7246-7265 Msa1462290:three_prime_UTR 50.0%
CCCTTCCTACTTGACGTCAT+AGG - tig0042133:7926-7945 Msa1462290:intron 50.0%
GCCTATGACGTCAAGTAGGA+AGG + tig0042133:7930-7949 None:intergenic 50.0%
! AAGGATTAGGAGCTCTGGTC+TGG - tig0042133:9097-9116 Msa1462290:intron 50.0%
! TAGGAGCTCTGGTCTGGATT+TGG - tig0042133:9103-9122 Msa1462290:intron 50.0%
GTCTGTTTGCAACAGCTGTC+AGG - tig0042133:9524-9543 Msa1462290:intron 50.0%
TAACCGCATGCTGGACCATA+TGG - tig0042133:9574-9593 Msa1462290:intron 50.0%
ACACCATATGGTCCAGCATG+CGG + tig0042133:9580-9599 None:intergenic 50.0%
CATTATGACATGTGGCGCCA+TGG + tig0042133:9785-9804 None:intergenic 50.0%
CATGGCGCCACATGTCATAA+TGG - tig0042133:9783-9802 Msa1462290:intron 50.0%
GCCCCATAGGCAATTTGTGA+AGG - tig0042133:9827-9846 Msa1462290:intron 50.0%
TTGTGAAGGGATGTCTGCCT+TGG - tig0042133:9841-9860 Msa1462290:intron 50.0%
!! CCAATGTTGTTGATGGCGGA+GGG + tig0042133:9932-9951 None:intergenic 50.0%
!! TCCAATGTTGTTGATGGCGG+AGG + tig0042133:9933-9952 None:intergenic 50.0%
AACACATTGATGGGGTGGAG+TGG - tig0042133:10068-10087 Msa1462290:intron 50.0%
GAGCCGAAGAATGTTCTCAC+TGG - tig0042133:10162-10181 Msa1462290:intron 50.0%
CGAGTGAATCCGTGATCTGG+TGG - tig0042133:7249-7268 Msa1462290:three_prime_UTR 55.0%
GTGAATCCGTGATCTGGTGG+TGG - tig0042133:7252-7271 Msa1462290:three_prime_UTR 55.0%
!! AATCCGTGATCTGGTGGTGG+TGG - tig0042133:7255-7274 Msa1462290:three_prime_UTR 55.0%
TCACCACCACCACCAGATCA+CGG + tig0042133:7261-7280 None:intergenic 55.0%
AGGAAGTGAAGCTGCTCTGC+AGG + tig0042133:7829-7848 None:intergenic 55.0%
AGAAGAGAGGGAAGGGAGTG+AGG - tig0042133:9050-9069 Msa1462290:intron 55.0%
TCTTCAAGGGGAGTCCTCTC+AGG - tig0042133:9700-9719 Msa1462290:intron 55.0%
GGGAGTCCTCTCAGGAACTA+TGG - tig0042133:9708-9727 Msa1462290:intron 55.0%
TGGACGCCGTTTAACAGCAC+TGG + tig0042133:9765-9784 None:intergenic 55.0%
! GTGCTGTTAAACGGCGTCCA+TGG - tig0042133:9765-9784 Msa1462290:intron 55.0%
!! TGGCGGAGGGTGCCATAATA+TGG + tig0042133:9919-9938 None:intergenic 55.0%
CCCTCCGCCATCAACAACAT+TGG - tig0042133:9929-9948 Msa1462290:intron 55.0%
TGCTCTGCAGGCAGAGACGT+AGG + tig0042133:7817-7836 None:intergenic 60.0%
!! GGCGACCTTGGTGTCCTATC+AGG + tig0042133:8980-8999 None:intergenic 60.0%
GTGAATAGGGAGGGCGACCT+TGG + tig0042133:8992-9011 None:intergenic 60.0%
TGCGGCTTATGACAGCGCCA+AGG + tig0042133:9861-9880 None:intergenic 60.0%
GGCGCTGTCATAAGCCGCAA+TGG - tig0042133:9862-9881 Msa1462290:intron 60.0%
Chromosome Type Strat End Strand Name
tig0042133 gene 7067 10478 7067 ID=Msa1462290;Name=Msa1462290
tig0042133 mRNA 7067 10478 7067 ID=Msa1462290-mRNA-1;Parent=Msa1462290;Name=Msa1462290-mRNA-1;_AED=0.21;_eAED=0.21;_QI=114|0.75|1|1|0.5|0.4|5|244|107
tig0042133 exon 7067 7400 7067 ID=Msa1462290-mRNA-1:exon:23600;Parent=Msa1462290-mRNA-1
tig0042133 exon 7950 8006 7950 ID=Msa1462290-mRNA-1:exon:23599;Parent=Msa1462290-mRNA-1
tig0042133 exon 8873 9032 8873 ID=Msa1462290-mRNA-1:exon:23598;Parent=Msa1462290-mRNA-1
tig0042133 exon 10245 10306 10245 ID=Msa1462290-mRNA-1:exon:23597;Parent=Msa1462290-mRNA-1
tig0042133 exon 10410 10478 10410 ID=Msa1462290-mRNA-1:exon:23596;Parent=Msa1462290-mRNA-1
tig0042133 five_prime_UTR 10410 10478 10410 ID=Msa1462290-mRNA-1:five_prime_utr;Parent=Msa1462290-mRNA-1
tig0042133 five_prime_UTR 10262 10306 10262 ID=Msa1462290-mRNA-1:five_prime_utr;Parent=Msa1462290-mRNA-1
tig0042133 CDS 10245 10261 10245 ID=Msa1462290-mRNA-1:cds;Parent=Msa1462290-mRNA-1
tig0042133 CDS 8873 9032 8873 ID=Msa1462290-mRNA-1:cds;Parent=Msa1462290-mRNA-1
tig0042133 CDS 7950 8006 7950 ID=Msa1462290-mRNA-1:cds;Parent=Msa1462290-mRNA-1
tig0042133 CDS 7311 7400 7311 ID=Msa1462290-mRNA-1:cds;Parent=Msa1462290-mRNA-1
tig0042133 three_prime_UTR 7067 7310 7067 ID=Msa1462290-mRNA-1:three_prime_utr;Parent=Msa1462290-mRNA-1
Gene Sequence

>Msa1462290

ATGATGAATTCTAGAAGAGACACCCGAAACAACAGAGTTGCTCTTTTTGATGGTATTGAGGAGGGTGGAATCAGAGCATCATCTATGTACTCCTCAGCTTCTTCCCATGAAATTGATGAGCATGATAATGAACAAGCAATGGATGGATTGCAAGATAGGGTTAATCTGCTGAAAAGACTGTCAGGTGATATACATGAGGAGGTGGATAATCATAACCGCATGCTGGACCATATGGTATTTGAGACAAAATCGAGCCGAAGAATGTTCTCACTGGTAGCATCCTTTGTTGTGATTTTTCTTATCATTTATTATCTAACTAGGTAA

Protein sequence

>Msa1462290

MMNSRRDTRNNRVALFDGIEEGGIRASSMYSSASSHEIDEHDNEQAMDGLQDRVNLLKRLSGDIHEEVDNHNRMLDHMVFETKSSRRMFSLVASFVVIFLIIYYLTR*