AlfalfaGEDB | Msa0720710

M. sativa cultivar zhongmu-4 / Msa0720710

KEGG: -
GO: GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
PFAM: -

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0720710	AES95894.1	94.531	128	7	0	1	128	2	129	2.24e-73	224

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0720710	sp\|Q9LSK9\|Y5566_ARATH	58.268	127	51	2	2	128	1	125	2.92e-43	141

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0720710	G7KF59	94.531	128	7	0	1	128	2	129	1.07e-73	224

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0076640	Msa0720710	0.823178	1.592664e-53	-8.615850e-47
Msa0099090	Msa0720710	-0.800886	1.167953e-48	-8.615850e-47
Msa0617470	Msa0720710	-0.812137	4.932642e-51	-8.615850e-47
Msa0651870	Msa0720710	0.804591	2.007472e-49	-8.615850e-47
Msa0651890	Msa0720710	0.802116	6.536567e-49	-8.615850e-47
Msa0700250	Msa0720710	-0.806044	9.956812e-50	-8.615850e-47
Msa0720710	Msa0750490	-0.802342	5.870511e-49	-8.615850e-47
Msa0720710	Msa0761280	0.827844	1.249797e-54	-8.615850e-47
Msa0720710	Msa0947420	0.807761	4.316365e-50	-8.615850e-47
Msa0720710	Msa1202710	-0.800039	1.737138e-48	-8.615850e-47
Msa0720710	Msa1251500	0.819797	9.618868e-53	-8.615850e-47
Msa0720710	Msa1260240	-0.800240	1.581275e-48	-8.615850e-47
Msa0720710	Msa1292140	0.802088	6.622883e-49	-8.615850e-47
Msa0720710	Msa1345390	0.807495	4.916563e-50	-8.615850e-47
Msa0720710	Msa1363280	-0.802147	6.438964e-49	-8.615850e-47
Msa0720710	Msa1371540	-0.809240	2.086781e-50	-8.615850e-47
Msa0720710	Msa1375640	0.803744	3.011336e-49	-8.615850e-47
Msa0720710	Msa1382100	-0.815220	1.033355e-51	-8.615850e-47
Msa0720710	Msa1408990	0.811049	8.501977e-51	-8.615850e-47
Msa0138340	Msa0720710	-0.812062	5.121835e-51	-8.615850e-47
Msa0147960	Msa0720710	-0.812311	4.519550e-51	-8.615850e-47
Msa0186400	Msa0720710	-0.803934	2.750308e-49	-8.615850e-47
Msa0236690	Msa0720710	-0.811968	5.369293e-51	-8.615850e-47
Msa0238140	Msa0720710	0.820254	7.558299e-53	-8.615850e-47
Msa0368620	Msa0720710	0.805010	1.640857e-49	-8.615850e-47
Msa0390590	Msa0720710	-0.801360	9.343350e-49	-8.615850e-47
Msa0269660	Msa0720710	-0.819679	1.023271e-52	-8.615850e-47
Msa0508160	Msa0720710	0.808826	2.559532e-50	-8.615850e-47
Msa0526490	Msa0720710	-0.829530	4.889494e-55	-8.615850e-47
Msa0526500	Msa0720710	-0.816720	4.781853e-52	-8.615850e-47
Msa0527210	Msa0720710	-0.806629	7.497941e-50	-8.615850e-47
Msa0538050	Msa0720710	-0.805267	1.449948e-49	-8.615850e-47
Msa0563440	Msa0720710	0.810319	1.223167e-50	-8.615850e-47
Msa0585720	Msa0720710	-0.803452	3.462409e-49	-8.615850e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0720710	MtrunA17_Chr5g0411511	94.531	128	7	0	1	128	2	129	2.06e-77	224
Msa0720710	MtrunA17_Chr8g0366891	63.478	115	37	3	8	122	7	116	9.10e-46	144
Msa0720710	MtrunA17_Chr7g0249111	77.612	67	4	1	1	67	1	56	5.08e-20	77.4
Msa0720710	MtrunA17_Chr5g0428121	36.364	110	67	2	16	122	9	118	8.14e-12	58.2

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0720710	AT5G65660.1	58.268	127	51	2	2	128	1	125	2.97e-44	141

Find 83 sgRNAs with CRISPR-Local

Find 206 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
GAAAGATTAACTATAACTTA+TGG	0.276882	5_1:-16865103	None:intergenic
GGACTTGGAAGGTGGGGATT+GGG	0.296152	5_1:-16865429	None:intergenic
AATGGTGATCACGGTGGTTT+GGG	0.312224	5_1:-16865886	None:intergenic
TGGACTTGGAAGGTGGGGAT+TGG	0.315598	5_1:-16865430	None:intergenic
CAATGGTGATCACGGTGGTT+TGG	0.334209	5_1:-16865887	None:intergenic
TATTACCCTGGAGTGAGGTT+TGG	0.380467	5_1:-16865450	None:intergenic
AAAGATTAACTATAACTTAT+GGG	0.381144	5_1:-16865102	None:intergenic
CTCATCATCTTCAGCTTAAG+TGG	0.396808	5_1:+16865323	Msa0720710:CDS
TGTAGTTGGTGAAGTGTTGC+GGG	0.397253	5_1:-16865011	None:intergenic
GTGTGTAGTTGAGGAAATTA+AGG	0.403752	5_1:-16865125	None:intergenic
CTTGCCCGTGTCAGCATTCG+CGG	0.412175	5_1:+16865827	Msa0720710:CDS
ACTTGAGGTGGTGAAAGATC+TGG	0.413310	5_1:-16865248	None:intergenic
GATCACGGTGGTTTGGGCGG+TGG	0.414427	5_1:-16865880	None:intergenic
ATGTGCGGGCACTTGTACAA+TGG	0.420703	5_1:+16866237	Msa0720710:three_prime_UTR
GCTTGTTCTGATGTTGGTGT+TGG	0.430240	5_1:-16865184	None:intergenic
TAACTTGCTTGTTCTGATGT+TGG	0.439383	5_1:-16865190	None:intergenic
TTGGTGAAGTGTTGCGGGAA+AGG	0.442491	5_1:-16865006	None:intergenic
TCTTCTCATGTTGCTACCAC+TGG	0.447898	5_1:+16865348	Msa0720710:CDS
TAGAAAGGGTGGCAAGCAAA+TGG	0.454100	5_1:-16865048	None:intergenic
TAGAATGAAGTGAAATAGAA+AGG	0.457772	5_1:-16865063	None:intergenic
GAGGTTTGGACTTGGAAGGT+GGG	0.459370	5_1:-16865436	None:intergenic
TGAGGTTTGGACTTGGAAGG+TGG	0.462623	5_1:-16865437	None:intergenic
CTTCCTATTGTCTCATGTGC+GGG	0.469223	5_1:+16866223	Msa0720710:three_prime_UTR
CCTGGAGTGAGGTTTGGACT+TGG	0.474511	5_1:-16865444	None:intergenic
GAAAGAAAGGATTGTGTAGT+TGG	0.475803	5_1:-16865025	None:intergenic
CCGTCCCTCGGTTTCCCACT+AGG	0.481711	5_1:+16865284	Msa0720710:CDS
GTGCCCGCACATGAGACAAT+AGG	0.486780	5_1:-16866226	None:intergenic
TGTGCGGGCACTTGTACAAT+GGG	0.499636	5_1:+16866238	Msa0720710:three_prime_UTR
GTATCAATACAAACAATTAG+TGG	0.499726	5_1:-16865985	None:intergenic
CCAAGTCCAAACCTCACTCC+AGG	0.502297	5_1:+16865444	Msa0720710:CDS
GTGTTGCGGGAAAGGATAGT+AGG	0.502510	5_1:-16864998	None:intergenic
AACTTTGGTACCTCATCCCC+TGG	0.505169	5_1:-16865793	None:intergenic
AGAAAGGGTGGCAAGCAAAT+GGG	0.506384	5_1:-16865047	None:intergenic
CAAGGCATGGCTATAAACTT+TGG	0.507163	5_1:-16865808	None:intergenic
TATCAAAGGTATATGATGAT+GGG	0.511408	5_1:+16865221	Msa0720710:exon
TAAGGGATTATGCAGATGGC+AGG	0.513647	5_1:+16866150	Msa0720710:three_prime_UTR
GGCAAGCAAATGGGAAAGAA+AGG	0.515211	5_1:-16865038	None:intergenic
ATGCTGACACGGGCAAGGCA+TGG	0.518272	5_1:-16865821	None:intergenic
TTATCAAAGGTATATGATGA+TGG	0.518317	5_1:+16865220	Msa0720710:exon
GTGTAGTTGGTGAAGTGTTG+CGG	0.522503	5_1:-16865012	None:intergenic
TCAATCTCTCTCTCATCTTG+AGG	0.522920	5_1:+16865391	Msa0720710:CDS
AGTGTTGATGCCAGGGGATG+AGG	0.523209	5_1:+16865783	Msa0720710:CDS
CATTAATTCTTCTATACACA+TGG	0.525345	5_1:-16865947	None:intergenic
GAGTGAGGTTTGGACTTGGA+AGG	0.526857	5_1:-16865440	None:intergenic
CTTGAGGTGGTGAAAGATCT+GGG	0.527529	5_1:-16865247	None:intergenic
CGCGAATGCTGACACGGGCA+AGG	0.530171	5_1:-16865826	None:intergenic
AGTGTGACAGTGTTGATGCC+AGG	0.532871	5_1:+16865775	Msa0720710:CDS
AGCTGAAGATGATGAGCAAG+AGG	0.534577	5_1:-16865316	None:intergenic
AGAGGAGAGCAGTGCCTAGT+GGG	0.536628	5_1:-16865298	None:intergenic
TCTAGCCGCGAATGCTGACA+CGG	0.546125	5_1:-16865832	None:intergenic
CTTCTCATGTTGCTACCACT+GGG	0.549662	5_1:+16865349	Msa0720710:CDS
GATACATCTCGACCGTCCCT+CGG	0.553382	5_1:+16865272	Msa0720710:CDS
ATACTAAGGGATTATGCAGA+TGG	0.556384	5_1:+16866146	Msa0720710:three_prime_UTR
GGTGATCACGGTGGTTTGGG+CGG	0.561792	5_1:-16865883	None:intergenic
AGGTTTGGACTTGGAAGGTG+GGG	0.562235	5_1:-16865435	None:intergenic
AGAATGAAGTGAAATAGAAA+GGG	0.563062	5_1:-16865062	None:intergenic
ATGAAGTGAAATAGAAAGGG+TGG	0.570081	5_1:-16865059	None:intergenic
TGTTGGTGGATAGGAAATGG+AGG	0.574633	5_1:+16865735	Msa0720710:intron
TCTTCCTATTGTCTCATGTG+CGG	0.578753	5_1:+16866222	Msa0720710:three_prime_UTR
ACATGCTACAATGGTGATCA+CGG	0.589068	5_1:-16865895	None:intergenic
GCGGGAAAGGATAGTAGGCG+TGG	0.589351	5_1:-16864993	None:intergenic
GTTGGTGGATAGGAAATGGA+GGG	0.592995	5_1:+16865736	Msa0720710:intron
GGTCGAGATGTATCTACTTG+AGG	0.597640	5_1:-16865263	None:intergenic
CAATAATTAACATGCTACAA+TGG	0.602901	5_1:-16865904	None:intergenic
AAAATTATTACCCTGGAGTG+AGG	0.603461	5_1:-16865455	None:intergenic
TGTATGTGTGTGTGTAGTTG+AGG	0.603525	5_1:-16865134	None:intergenic
AAGGGATTATGCAGATGGCA+GGG	0.605632	5_1:+16866151	Msa0720710:three_prime_UTR
CTAGCCGCGAATGCTGACAC+GGG	0.608171	5_1:-16865831	None:intergenic
CAGTGCCTAGTGGGAAACCG+AGG	0.610817	5_1:-16865289	None:intergenic
CAAGTCCAAACCTCACTCCA+GGG	0.613631	5_1:+16865445	Msa0720710:CDS
GTGTGACAGTGTTGATGCCA+GGG	0.615539	5_1:+16865776	Msa0720710:CDS
ATCAAAGGTATATGATGATG+GGG	0.616811	5_1:+16865222	Msa0720710:exon
CGGGAAAGGATAGTAGGCGT+GGG	0.622962	5_1:-16864992	None:intergenic
AAGTTATAAGAGCTTATCAA+AGG	0.623107	5_1:+16865207	Msa0720710:five_prime_UTR
AAGAGGAGAGCAGTGCCTAG+TGG	0.632457	5_1:-16865299	None:intergenic
CGAGATGTATCTACTTGAGG+TGG	0.635100	5_1:-16865260	None:intergenic
AGTGCCTAGTGGGAAACCGA+GGG	0.658274	5_1:-16865288	None:intergenic
TGGTGGATAGGAAATGGAGG+GGG	0.658677	5_1:+16865738	Msa0720710:intron
CCTAGTGGGAAACCGAGGGA+CGG	0.663157	5_1:-16865284	None:intergenic
TTGGTGGATAGGAAATGGAG+GGG	0.673145	5_1:+16865737	Msa0720710:intron
CAATGTGTTTGTCAGAAACG+TGG	0.674141	5_1:+16866021	Msa0720710:three_prime_UTR
TGTGACAGTGTTGATGCCAG+GGG	0.746992	5_1:+16865777	Msa0720710:CDS
TGCTACAATGGTGATCACGG+TGG	0.756673	5_1:-16865892	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	AAAGATTAACTATAACTTAT+GGG	-	chr5_1:16865105-16865124	None:intergenic	15.0%
!!!	AATTGATTATAATTTTCTCT+TGG	-	chr5_1:16865585-16865604	None:intergenic	15.0%
!!	AATAGATTGTAAAAATACTA+AGG	+	chr5_1:16866132-16866151	Msa0720710:three_prime_UTR	15.0%
!!	ATAGATTGTAAAAATACTAA+GGG	+	chr5_1:16866133-16866152	Msa0720710:three_prime_UTR	15.0%
!!	AAAGATTAACTATAACTTAT+GGG	-	chr5_1:16865105-16865124	None:intergenic	15.0%
!!!	AATTGATTATAATTTTCTCT+TGG	-	chr5_1:16865585-16865604	None:intergenic	15.0%
!!	AATAGATTGTAAAAATACTA+AGG	+	chr5_1:16866132-16866151	Msa0720710:three_prime_UTR	15.0%
!!	ATAGATTGTAAAAATACTAA+GGG	+	chr5_1:16866133-16866152	Msa0720710:three_prime_UTR	15.0%
!!	GAAAGATTAACTATAACTTA+TGG	-	chr5_1:16865106-16865125	None:intergenic	20.0%
!!!	CTATGCATATGTAAATATTT+TGG	+	chr5_1:16865554-16865573	Msa0720710:intron	20.0%
!!!	GAATTTACAATTTTGTTTGT+TGG	+	chr5_1:16865718-16865737	Msa0720710:intron	20.0%
!!!	TCGTAATTTTACTGTAATTT+TGG	-	chr5_1:16866068-16866087	None:intergenic	20.0%
!!	GAAAGATTAACTATAACTTA+TGG	-	chr5_1:16865106-16865125	None:intergenic	20.0%
!!!	CTATGCATATGTAAATATTT+TGG	+	chr5_1:16865554-16865573	Msa0720710:intron	20.0%
!!!	GAATTTACAATTTTGTTTGT+TGG	+	chr5_1:16865718-16865737	Msa0720710:intron	20.0%
!!!	TCGTAATTTTACTGTAATTT+TGG	-	chr5_1:16866068-16866087	None:intergenic	20.0%
!	AGAATGAAGTGAAATAGAAA+GGG	-	chr5_1:16865065-16865084	None:intergenic	25.0%
!	TAGAATGAAGTGAAATAGAA+AGG	-	chr5_1:16865066-16865085	None:intergenic	25.0%
!	AAGTTATAAGAGCTTATCAA+AGG	+	chr5_1:16865207-16865226	Msa0720710:five_prime_UTR	25.0%
!!	TTATCAAAGGTATATGATGA+TGG	+	chr5_1:16865220-16865239	Msa0720710:exon	25.0%
!!	TATCAAAGGTATATGATGAT+GGG	+	chr5_1:16865221-16865240	Msa0720710:exon	25.0%
!	AAAGAGTAAAATTATTACCC+TGG	-	chr5_1:16865465-16865484	None:intergenic	25.0%
!!!	TTTACAATTTTGTTTGTTGG+TGG	+	chr5_1:16865721-16865740	Msa0720710:intron	25.0%
!	CAATAATTAACATGCTACAA+TGG	-	chr5_1:16865907-16865926	None:intergenic	25.0%
!	CATTAATTCTTCTATACACA+TGG	-	chr5_1:16865950-16865969	None:intergenic	25.0%
!	GTATCAATACAAACAATTAG+TGG	-	chr5_1:16865988-16866007	None:intergenic	25.0%
!!!	CTGTAATTTTGGTAGAATTA+CGG	-	chr5_1:16866057-16866076	None:intergenic	25.0%
!!	TTACAATCTATTGTTTTCGT+CGG	-	chr5_1:16866124-16866143	None:intergenic	25.0%
!	AGAATGAAGTGAAATAGAAA+GGG	-	chr5_1:16865065-16865084	None:intergenic	25.0%
!	TAGAATGAAGTGAAATAGAA+AGG	-	chr5_1:16865066-16865085	None:intergenic	25.0%
!	AAGTTATAAGAGCTTATCAA+AGG	+	chr5_1:16865207-16865226	Msa0720710:five_prime_UTR	25.0%
!!	TTATCAAAGGTATATGATGA+TGG	+	chr5_1:16865220-16865239	Msa0720710:exon	25.0%
!!	TATCAAAGGTATATGATGAT+GGG	+	chr5_1:16865221-16865240	Msa0720710:exon	25.0%
!	AAAGAGTAAAATTATTACCC+TGG	-	chr5_1:16865465-16865484	None:intergenic	25.0%
!!!	TTTACAATTTTGTTTGTTGG+TGG	+	chr5_1:16865721-16865740	Msa0720710:intron	25.0%
!	CAATAATTAACATGCTACAA+TGG	-	chr5_1:16865907-16865926	None:intergenic	25.0%
!	CATTAATTCTTCTATACACA+TGG	-	chr5_1:16865950-16865969	None:intergenic	25.0%
!	GTATCAATACAAACAATTAG+TGG	-	chr5_1:16865988-16866007	None:intergenic	25.0%
!!!	CTGTAATTTTGGTAGAATTA+CGG	-	chr5_1:16866057-16866076	None:intergenic	25.0%
!!	TTACAATCTATTGTTTTCGT+CGG	-	chr5_1:16866124-16866143	None:intergenic	25.0%
!	ATCAAAGGTATATGATGATG+GGG	+	chr5_1:16865222-16865241	Msa0720710:exon	30.0%
	AGGATCATACAGTTGTAAAA+TGG	-	chr5_1:16865624-16865643	None:intergenic	30.0%
	TTGACGTTGTAAGACAAAAA+AGG	-	chr5_1:16865644-16865663	None:intergenic	30.0%
!!	AATTTTGTTTGTTGGTGGAT+AGG	+	chr5_1:16865726-16865745	Msa0720710:intron	30.0%
!	TACAATCTATTGTTTTCGTC+GGG	-	chr5_1:16866123-16866142	None:intergenic	30.0%
!	ATCAAAGGTATATGATGATG+GGG	+	chr5_1:16865222-16865241	Msa0720710:exon	30.0%
	AGGATCATACAGTTGTAAAA+TGG	-	chr5_1:16865624-16865643	None:intergenic	30.0%
	TTGACGTTGTAAGACAAAAA+AGG	-	chr5_1:16865644-16865663	None:intergenic	30.0%
!!	AATTTTGTTTGTTGGTGGAT+AGG	+	chr5_1:16865726-16865745	Msa0720710:intron	30.0%
!	TACAATCTATTGTTTTCGTC+GGG	-	chr5_1:16866123-16866142	None:intergenic	30.0%
	GAAAGAAAGGATTGTGTAGT+TGG	-	chr5_1:16865028-16865047	None:intergenic	35.0%
	ATGAAGTGAAATAGAAAGGG+TGG	-	chr5_1:16865062-16865081	None:intergenic	35.0%
	GTGTGTAGTTGAGGAAATTA+AGG	-	chr5_1:16865128-16865147	None:intergenic	35.0%
!!	TAACTTGCTTGTTCTGATGT+TGG	-	chr5_1:16865193-16865212	None:intergenic	35.0%
	AAAATTATTACCCTGGAGTG+AGG	-	chr5_1:16865458-16865477	None:intergenic	35.0%
	ATACTAAGGGATTATGCAGA+TGG	+	chr5_1:16866146-16866165	Msa0720710:three_prime_UTR	35.0%
	GAAAGAAAGGATTGTGTAGT+TGG	-	chr5_1:16865028-16865047	None:intergenic	35.0%
	ATGAAGTGAAATAGAAAGGG+TGG	-	chr5_1:16865062-16865081	None:intergenic	35.0%
	GTGTGTAGTTGAGGAAATTA+AGG	-	chr5_1:16865128-16865147	None:intergenic	35.0%
!!	TAACTTGCTTGTTCTGATGT+TGG	-	chr5_1:16865193-16865212	None:intergenic	35.0%
	AAAATTATTACCCTGGAGTG+AGG	-	chr5_1:16865458-16865477	None:intergenic	35.0%
	ATACTAAGGGATTATGCAGA+TGG	+	chr5_1:16866146-16866165	Msa0720710:three_prime_UTR	35.0%
	TGTATGTGTGTGTGTAGTTG+AGG	-	chr5_1:16865137-16865156	None:intergenic	40.0%
	CTCATCATCTTCAGCTTAAG+TGG	+	chr5_1:16865323-16865342	Msa0720710:CDS	40.0%
	TCAATCTCTCTCTCATCTTG+AGG	+	chr5_1:16865391-16865410	Msa0720710:CDS	40.0%
!	GTTTGTTGGTGGATAGGAAA+TGG	+	chr5_1:16865732-16865751	Msa0720710:intron	40.0%
	CAAGGCATGGCTATAAACTT+TGG	-	chr5_1:16865811-16865830	None:intergenic	40.0%
	ACATGCTACAATGGTGATCA+CGG	-	chr5_1:16865898-16865917	None:intergenic	40.0%
	CAATGTGTTTGTCAGAAACG+TGG	+	chr5_1:16866021-16866040	Msa0720710:three_prime_UTR	40.0%
	TCTTCCTATTGTCTCATGTG+CGG	+	chr5_1:16866222-16866241	Msa0720710:three_prime_UTR	40.0%
	TGTATGTGTGTGTGTAGTTG+AGG	-	chr5_1:16865137-16865156	None:intergenic	40.0%
	CTCATCATCTTCAGCTTAAG+TGG	+	chr5_1:16865323-16865342	Msa0720710:CDS	40.0%
	TCAATCTCTCTCTCATCTTG+AGG	+	chr5_1:16865391-16865410	Msa0720710:CDS	40.0%
!	GTTTGTTGGTGGATAGGAAA+TGG	+	chr5_1:16865732-16865751	Msa0720710:intron	40.0%
	CAAGGCATGGCTATAAACTT+TGG	-	chr5_1:16865811-16865830	None:intergenic	40.0%
	ACATGCTACAATGGTGATCA+CGG	-	chr5_1:16865898-16865917	None:intergenic	40.0%
	CAATGTGTTTGTCAGAAACG+TGG	+	chr5_1:16866021-16866040	Msa0720710:three_prime_UTR	40.0%
	TCTTCCTATTGTCTCATGTG+CGG	+	chr5_1:16866222-16866241	Msa0720710:three_prime_UTR	40.0%
!!	TGTAGTTGGTGAAGTGTTGC+GGG	-	chr5_1:16865014-16865033	None:intergenic	45.0%
!!	GTGTAGTTGGTGAAGTGTTG+CGG	-	chr5_1:16865015-16865034	None:intergenic	45.0%
	GGCAAGCAAATGGGAAAGAA+AGG	-	chr5_1:16865041-16865060	None:intergenic	45.0%
	AGAAAGGGTGGCAAGCAAAT+GGG	-	chr5_1:16865050-16865069	None:intergenic	45.0%
	TAGAAAGGGTGGCAAGCAAA+TGG	-	chr5_1:16865051-16865070	None:intergenic	45.0%
	GCTTGTTCTGATGTTGGTGT+TGG	-	chr5_1:16865187-16865206	None:intergenic	45.0%
	CTTGAGGTGGTGAAAGATCT+GGG	-	chr5_1:16865250-16865269	None:intergenic	45.0%
	ACTTGAGGTGGTGAAAGATC+TGG	-	chr5_1:16865251-16865270	None:intergenic	45.0%
	CGAGATGTATCTACTTGAGG+TGG	-	chr5_1:16865263-16865282	None:intergenic	45.0%
	GGTCGAGATGTATCTACTTG+AGG	-	chr5_1:16865266-16865285	None:intergenic	45.0%
	AGCTGAAGATGATGAGCAAG+AGG	-	chr5_1:16865319-16865338	None:intergenic	45.0%
	TCTTCTCATGTTGCTACCAC+TGG	+	chr5_1:16865348-16865367	Msa0720710:CDS	45.0%
	CTTCTCATGTTGCTACCACT+GGG	+	chr5_1:16865349-16865368	Msa0720710:CDS	45.0%
!	GTGAACGAAACTTTTCCCAG+TGG	-	chr5_1:16865367-16865386	None:intergenic	45.0%
	TATTACCCTGGAGTGAGGTT+TGG	-	chr5_1:16865453-16865472	None:intergenic	45.0%
!	TGTTGGTGGATAGGAAATGG+AGG	+	chr5_1:16865735-16865754	Msa0720710:intron	45.0%
!	GTTGGTGGATAGGAAATGGA+GGG	+	chr5_1:16865736-16865755	Msa0720710:intron	45.0%
!	TTGGTGGATAGGAAATGGAG+GGG	+	chr5_1:16865737-16865756	Msa0720710:intron	45.0%
	GAAATGGAGGGGGAAAAGAA+GGG	+	chr5_1:16865748-16865767	Msa0720710:CDS	45.0%
	AAATGGAGGGGGAAAAGAAG+GGG	+	chr5_1:16865749-16865768	Msa0720710:CDS	45.0%
	AATGGTGATCACGGTGGTTT+GGG	-	chr5_1:16865889-16865908	None:intergenic	45.0%
	TAAGGGATTATGCAGATGGC+AGG	+	chr5_1:16866150-16866169	Msa0720710:three_prime_UTR	45.0%
	AAGGGATTATGCAGATGGCA+GGG	+	chr5_1:16866151-16866170	Msa0720710:three_prime_UTR	45.0%
	CTTCCTATTGTCTCATGTGC+GGG	+	chr5_1:16866223-16866242	Msa0720710:three_prime_UTR	45.0%
!!	TGTAGTTGGTGAAGTGTTGC+GGG	-	chr5_1:16865014-16865033	None:intergenic	45.0%
!!	GTGTAGTTGGTGAAGTGTTG+CGG	-	chr5_1:16865015-16865034	None:intergenic	45.0%
	GGCAAGCAAATGGGAAAGAA+AGG	-	chr5_1:16865041-16865060	None:intergenic	45.0%
	AGAAAGGGTGGCAAGCAAAT+GGG	-	chr5_1:16865050-16865069	None:intergenic	45.0%
	TAGAAAGGGTGGCAAGCAAA+TGG	-	chr5_1:16865051-16865070	None:intergenic	45.0%
	GCTTGTTCTGATGTTGGTGT+TGG	-	chr5_1:16865187-16865206	None:intergenic	45.0%
	CTTGAGGTGGTGAAAGATCT+GGG	-	chr5_1:16865250-16865269	None:intergenic	45.0%
	ACTTGAGGTGGTGAAAGATC+TGG	-	chr5_1:16865251-16865270	None:intergenic	45.0%
	CGAGATGTATCTACTTGAGG+TGG	-	chr5_1:16865263-16865282	None:intergenic	45.0%
	GGTCGAGATGTATCTACTTG+AGG	-	chr5_1:16865266-16865285	None:intergenic	45.0%
	AGCTGAAGATGATGAGCAAG+AGG	-	chr5_1:16865319-16865338	None:intergenic	45.0%
	TCTTCTCATGTTGCTACCAC+TGG	+	chr5_1:16865348-16865367	Msa0720710:CDS	45.0%
	CTTCTCATGTTGCTACCACT+GGG	+	chr5_1:16865349-16865368	Msa0720710:CDS	45.0%
!	GTGAACGAAACTTTTCCCAG+TGG	-	chr5_1:16865367-16865386	None:intergenic	45.0%
	TATTACCCTGGAGTGAGGTT+TGG	-	chr5_1:16865453-16865472	None:intergenic	45.0%
!	TGTTGGTGGATAGGAAATGG+AGG	+	chr5_1:16865735-16865754	Msa0720710:intron	45.0%
!	GTTGGTGGATAGGAAATGGA+GGG	+	chr5_1:16865736-16865755	Msa0720710:intron	45.0%
!	TTGGTGGATAGGAAATGGAG+GGG	+	chr5_1:16865737-16865756	Msa0720710:intron	45.0%
	GAAATGGAGGGGGAAAAGAA+GGG	+	chr5_1:16865748-16865767	Msa0720710:CDS	45.0%
	AAATGGAGGGGGAAAAGAAG+GGG	+	chr5_1:16865749-16865768	Msa0720710:CDS	45.0%
	AATGGTGATCACGGTGGTTT+GGG	-	chr5_1:16865889-16865908	None:intergenic	45.0%
	TAAGGGATTATGCAGATGGC+AGG	+	chr5_1:16866150-16866169	Msa0720710:three_prime_UTR	45.0%
	AAGGGATTATGCAGATGGCA+GGG	+	chr5_1:16866151-16866170	Msa0720710:three_prime_UTR	45.0%
	CTTCCTATTGTCTCATGTGC+GGG	+	chr5_1:16866223-16866242	Msa0720710:three_prime_UTR	45.0%
!!!	ATAATTTGAAATTATAAAAT+TGG	+	chr5_1:16865527-16865546	Msa0720710:intron	5.0%
!!!	ATAATTTGAAATTATAAAAT+TGG	+	chr5_1:16865527-16865546	Msa0720710:intron	5.0%
	GTGTTGCGGGAAAGGATAGT+AGG	-	chr5_1:16865001-16865020	None:intergenic	50.0%
!!	TTGGTGAAGTGTTGCGGGAA+AGG	-	chr5_1:16865009-16865028	None:intergenic	50.0%
	AGGTTTGGACTTGGAAGGTG+GGG	-	chr5_1:16865438-16865457	None:intergenic	50.0%
	GAGGTTTGGACTTGGAAGGT+GGG	-	chr5_1:16865439-16865458	None:intergenic	50.0%
	TGAGGTTTGGACTTGGAAGG+TGG	-	chr5_1:16865440-16865459	None:intergenic	50.0%
	GAGTGAGGTTTGGACTTGGA+AGG	-	chr5_1:16865443-16865462	None:intergenic	50.0%
	CAAGTCCAAACCTCACTCCA+GGG	+	chr5_1:16865445-16865464	Msa0720710:CDS	50.0%
!	TGGTGGATAGGAAATGGAGG+GGG	+	chr5_1:16865738-16865757	Msa0720710:intron	50.0%
	GGAAATGGAGGGGGAAAAGA+AGG	+	chr5_1:16865747-16865766	Msa0720710:intron	50.0%
!!	AGTGTGACAGTGTTGATGCC+AGG	+	chr5_1:16865775-16865794	Msa0720710:CDS	50.0%
!!	GTGTGACAGTGTTGATGCCA+GGG	+	chr5_1:16865776-16865795	Msa0720710:CDS	50.0%
!!	TGTGACAGTGTTGATGCCAG+GGG	+	chr5_1:16865777-16865796	Msa0720710:CDS	50.0%
	AACTTTGGTACCTCATCCCC+TGG	-	chr5_1:16865796-16865815	None:intergenic	50.0%
	CAATGGTGATCACGGTGGTT+TGG	-	chr5_1:16865890-16865909	None:intergenic	50.0%
	TGCTACAATGGTGATCACGG+TGG	-	chr5_1:16865895-16865914	None:intergenic	50.0%
	ATGTGCGGGCACTTGTACAA+TGG	+	chr5_1:16866237-16866256	Msa0720710:three_prime_UTR	50.0%
	TGTGCGGGCACTTGTACAAT+GGG	+	chr5_1:16866238-16866257	Msa0720710:three_prime_UTR	50.0%
	GTGTTGCGGGAAAGGATAGT+AGG	-	chr5_1:16865001-16865020	None:intergenic	50.0%
!!	TTGGTGAAGTGTTGCGGGAA+AGG	-	chr5_1:16865009-16865028	None:intergenic	50.0%
	AGGTTTGGACTTGGAAGGTG+GGG	-	chr5_1:16865438-16865457	None:intergenic	50.0%
	GAGGTTTGGACTTGGAAGGT+GGG	-	chr5_1:16865439-16865458	None:intergenic	50.0%
	TGAGGTTTGGACTTGGAAGG+TGG	-	chr5_1:16865440-16865459	None:intergenic	50.0%
	GAGTGAGGTTTGGACTTGGA+AGG	-	chr5_1:16865443-16865462	None:intergenic	50.0%
	CAAGTCCAAACCTCACTCCA+GGG	+	chr5_1:16865445-16865464	Msa0720710:CDS	50.0%
!	TGGTGGATAGGAAATGGAGG+GGG	+	chr5_1:16865738-16865757	Msa0720710:intron	50.0%
	GGAAATGGAGGGGGAAAAGA+AGG	+	chr5_1:16865747-16865766	Msa0720710:intron	50.0%
!!	AGTGTGACAGTGTTGATGCC+AGG	+	chr5_1:16865775-16865794	Msa0720710:CDS	50.0%
!!	GTGTGACAGTGTTGATGCCA+GGG	+	chr5_1:16865776-16865795	Msa0720710:CDS	50.0%
!!	TGTGACAGTGTTGATGCCAG+GGG	+	chr5_1:16865777-16865796	Msa0720710:CDS	50.0%
	AACTTTGGTACCTCATCCCC+TGG	-	chr5_1:16865796-16865815	None:intergenic	50.0%
	CAATGGTGATCACGGTGGTT+TGG	-	chr5_1:16865890-16865909	None:intergenic	50.0%
	TGCTACAATGGTGATCACGG+TGG	-	chr5_1:16865895-16865914	None:intergenic	50.0%
	ATGTGCGGGCACTTGTACAA+TGG	+	chr5_1:16866237-16866256	Msa0720710:three_prime_UTR	50.0%
	TGTGCGGGCACTTGTACAAT+GGG	+	chr5_1:16866238-16866257	Msa0720710:three_prime_UTR	50.0%
	CGGGAAAGGATAGTAGGCGT+GGG	-	chr5_1:16864995-16865014	None:intergenic	55.0%
	GATACATCTCGACCGTCCCT+CGG	+	chr5_1:16865272-16865291	Msa0720710:CDS	55.0%
	AGTGCCTAGTGGGAAACCGA+GGG	-	chr5_1:16865291-16865310	None:intergenic	55.0%
	AGAGGAGAGCAGTGCCTAGT+GGG	-	chr5_1:16865301-16865320	None:intergenic	55.0%
	AAGAGGAGAGCAGTGCCTAG+TGG	-	chr5_1:16865302-16865321	None:intergenic	55.0%
	GGACTTGGAAGGTGGGGATT+GGG	-	chr5_1:16865432-16865451	None:intergenic	55.0%
	TGGACTTGGAAGGTGGGGAT+TGG	-	chr5_1:16865433-16865452	None:intergenic	55.0%
	CCTGGAGTGAGGTTTGGACT+TGG	-	chr5_1:16865447-16865466	None:intergenic	55.0%
	CCAAGTCCAAACCTCACTCC+AGG	+	chr5_1:16865444-16865463	Msa0720710:CDS	55.0%
!!	AGTGTTGATGCCAGGGGATG+AGG	+	chr5_1:16865783-16865802	Msa0720710:CDS	55.0%
	TCTAGCCGCGAATGCTGACA+CGG	-	chr5_1:16865835-16865854	None:intergenic	55.0%
	GTGCCCGCACATGAGACAAT+AGG	-	chr5_1:16866229-16866248	None:intergenic	55.0%
	CGGGAAAGGATAGTAGGCGT+GGG	-	chr5_1:16864995-16865014	None:intergenic	55.0%
	GATACATCTCGACCGTCCCT+CGG	+	chr5_1:16865272-16865291	Msa0720710:CDS	55.0%
	AGTGCCTAGTGGGAAACCGA+GGG	-	chr5_1:16865291-16865310	None:intergenic	55.0%
	AGAGGAGAGCAGTGCCTAGT+GGG	-	chr5_1:16865301-16865320	None:intergenic	55.0%
	AAGAGGAGAGCAGTGCCTAG+TGG	-	chr5_1:16865302-16865321	None:intergenic	55.0%
	GGACTTGGAAGGTGGGGATT+GGG	-	chr5_1:16865432-16865451	None:intergenic	55.0%
	TGGACTTGGAAGGTGGGGAT+TGG	-	chr5_1:16865433-16865452	None:intergenic	55.0%
	CCTGGAGTGAGGTTTGGACT+TGG	-	chr5_1:16865447-16865466	None:intergenic	55.0%
	CCAAGTCCAAACCTCACTCC+AGG	+	chr5_1:16865444-16865463	Msa0720710:CDS	55.0%
!!	AGTGTTGATGCCAGGGGATG+AGG	+	chr5_1:16865783-16865802	Msa0720710:CDS	55.0%
	TCTAGCCGCGAATGCTGACA+CGG	-	chr5_1:16865835-16865854	None:intergenic	55.0%
	GTGCCCGCACATGAGACAAT+AGG	-	chr5_1:16866229-16866248	None:intergenic	55.0%
	GCGGGAAAGGATAGTAGGCG+TGG	-	chr5_1:16864996-16865015	None:intergenic	60.0%
	CCTAGTGGGAAACCGAGGGA+CGG	-	chr5_1:16865287-16865306	None:intergenic	60.0%
	CAGTGCCTAGTGGGAAACCG+AGG	-	chr5_1:16865292-16865311	None:intergenic	60.0%
	ATGCTGACACGGGCAAGGCA+TGG	-	chr5_1:16865824-16865843	None:intergenic	60.0%
	CTTGCCCGTGTCAGCATTCG+CGG	+	chr5_1:16865827-16865846	Msa0720710:CDS	60.0%
	CTAGCCGCGAATGCTGACAC+GGG	-	chr5_1:16865834-16865853	None:intergenic	60.0%
!	GGTGATCACGGTGGTTTGGG+CGG	-	chr5_1:16865886-16865905	None:intergenic	60.0%
	GCGGGAAAGGATAGTAGGCG+TGG	-	chr5_1:16864996-16865015	None:intergenic	60.0%
	CCTAGTGGGAAACCGAGGGA+CGG	-	chr5_1:16865287-16865306	None:intergenic	60.0%
	CAGTGCCTAGTGGGAAACCG+AGG	-	chr5_1:16865292-16865311	None:intergenic	60.0%
	ATGCTGACACGGGCAAGGCA+TGG	-	chr5_1:16865824-16865843	None:intergenic	60.0%
	CTTGCCCGTGTCAGCATTCG+CGG	+	chr5_1:16865827-16865846	Msa0720710:CDS	60.0%
	CTAGCCGCGAATGCTGACAC+GGG	-	chr5_1:16865834-16865853	None:intergenic	60.0%
!	GGTGATCACGGTGGTTTGGG+CGG	-	chr5_1:16865886-16865905	None:intergenic	60.0%
	CCGTCCCTCGGTTTCCCACT+AGG	+	chr5_1:16865284-16865303	Msa0720710:CDS	65.0%
	CGCGAATGCTGACACGGGCA+AGG	-	chr5_1:16865829-16865848	None:intergenic	65.0%
!	GATCACGGTGGTTTGGGCGG+TGG	-	chr5_1:16865883-16865902	None:intergenic	65.0%
	CCGTCCCTCGGTTTCCCACT+AGG	+	chr5_1:16865284-16865303	Msa0720710:CDS	65.0%
	CGCGAATGCTGACACGGGCA+AGG	-	chr5_1:16865829-16865848	None:intergenic	65.0%
!	GATCACGGTGGTTTGGGCGG+TGG	-	chr5_1:16865883-16865902	None:intergenic	65.0%

Chromosome	Type	Strat	End	Strand	Name
chr5_1	gene	16864968	16866265	16864968	ID=Msa0720710;Name=Msa0720710
chr5_1	mRNA	16864968	16866265	16864968	ID=Msa0720710-mRNA-1;Parent=Msa0720710;Name=Msa0720710-mRNA-1;_AED=0.00;_eAED=0.00;_QI=265\|1\|1\|1\|1\|1\|2\|365\|128
chr5_1	exon	16864968	16865466	16864968	ID=Msa0720710-mRNA-1:exon:6403;Parent=Msa0720710-mRNA-1
chr5_1	exon	16865748	16866265	16865748	ID=Msa0720710-mRNA-1:exon:6404;Parent=Msa0720710-mRNA-1
chr5_1	five_prime_UTR	16864968	16865232	16864968	ID=Msa0720710-mRNA-1:five_prime_utr;Parent=Msa0720710-mRNA-1
chr5_1	CDS	16865233	16865466	16865233	ID=Msa0720710-mRNA-1:cds;Parent=Msa0720710-mRNA-1
chr5_1	CDS	16865748	16865900	16865748	ID=Msa0720710-mRNA-1:cds;Parent=Msa0720710-mRNA-1
chr5_1	three_prime_UTR	16865901	16866265	16865901	ID=Msa0720710-mRNA-1:three_prime_utr;Parent=Msa0720710-mRNA-1

Gene Sequence

>Msa0720710

ATGATGATGGGGAGCCCAGATCTTTCACCACCTCAAGTAGATACATCTCGACCGTCCCTCGGTTTCCCACTAGGCACTGCTCTCCTCTTGCTCATCATCTTCAGCTTAAGTGGTATCTTCTCATGTTGCTACCACTGGGAAAAGTTTCGTTCACTTCATCAATCTCTCTCTCATCTTGAGGCTGCACAAGCACATACCCAATCCCCACCTTCCAAGTCCAAACCTCACTCCAGGGAAATGGAGGGGGAAAAGAAGGGGCAGAGTGTGACAGTGTTGATGCCAGGGGATGAGGTACCAAAGTTTATAGCCATGCCTTGCCCGTGTCAGCATTCGCGGCTAGAAGAGATTATTGTCAACATCGAGAAGCCACCGCCCAAACCACCGTGA

Protein sequence

>Msa0720710

MMMGSPDLSPPQVDTSRPSLGFPLGTALLLLIIFSLSGIFSCCYHWEKFRSLHQSLSHLEAAQAHTQSPPSKSKPHSREMEGEKKGQSVTVLMPGDEVPKFIAMPCPCQHSRLEEIIVNIEKPPPKPP*